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607732 Commits

Author SHA1 Message Date
Jason W. Bacon 8aad5af0de biology/p5-transdecoder: Update to 5.7.0 
Numerous small fixes and enhancements since 5.4.0
Changes: https://github.com/TransDecoder/TransDecoder/tags

Reported by:    portscout
 2023-01-30 16:30:54 -06:00
Neel Chauhan eb4c38cf12 math/gnome-calculator: Update to 43.0.1 2023-01-30 14:07:00 -08:00
Jason W. Bacon 4512fe6572 biology/vcflib: Update to 1.0.6 
A few minor upstream fixes
Unbundle WFA2-lib, which may be useful outside vcflib
Update some submodules to latest commit (no recent releases available)
 2023-01-30 16:05:19 -06:00
Danilo Egea Gondolfo 3603e131e2 graphics/qiv: Update to 2.3.3 2023-01-30 22:02:51 +00:00
Danilo Egea Gondolfo 72f0bf2acf editors/yudit: Update to 3.0.9 2023-01-30 22:02:51 +00:00
Dries Michiels 1c18ee63f8 net-mgmt/netdata-go: update to 0.50.0 
Changes:	https://github.com/netdata/go.d.plugin/releases/tag/v0.50.0
 2023-01-30 22:46:44 +01:00
Matthias Fechner 3691c737b7 www/gitlab-ce: major upgrade to 15.7.5 
Changelog:
https://about.gitlab.com/releases/2022/12/22/gitlab-15-7-released/
https://about.gitlab.com/releases/2023/01/05/gitlab-15-7-1-released/
https://about.gitlab.com/releases/2023/01/09/security-release-gitlab-15-7-2-released/
https://about.gitlab.com/releases/2023/01/11/gitlab-15-7-3-released/
https://about.gitlab.com/releases/2023/01/17/critical-security-release-gitlab-15-7-5-released/
 2023-01-30 23:25:39 +02:00
Matthias Fechner 11818d4e60 www/gitlab-workhorse: update to 15.7.5 
Required for gitlab-ce 15.7 update
 2023-01-30 23:25:39 +02:00
Matthias Fechner 851d1e3bff net/gitlab-agent: update to 15.8.0 
Required for gitlab-ce 15.7 update
Changelog:
https://gitlab.com/gitlab-org/cluster-integration/gitlab-agent/-/commits/master
 2023-01-30 23:25:39 +02:00
Matthias Fechner 0394cf674e devel/gitlab-shell: update to 14.14.0 
Required for gitlab-ce 15.7 update
Changelog:
https://gitlab.com/gitlab-org/gitlab-shell/-/blob/main/CHANGELOG
 2023-01-30 23:25:39 +02:00
Matthias Fechner 41c8d3d873 devel/gitaly: update to 15.7.5 
Required for gitlab-ce 15.7 update
Changelog:
https://gitlab.com/gitlab-org/gitaly/-/blob/master/CHANGELOG.md
 2023-01-30 23:25:39 +02:00
Matthias Fechner bd7b119c2f www/gitlab-pages: update to 15.7.5 
Required for gitlab-ce 15.7 update
Changelog:
https://gitlab.com/gitlab-org/gitlab-pages/-/blob/master/CHANGELOG.md
 2023-01-30 23:25:39 +02:00
Matthias Fechner c1e0c91630 textproc/rubygem-version_sorter: update to 2.3.0 
Required for gitlab-ce 15.7 update
Changelog:
https://github.com/github/version_sorter/commits/master
 2023-01-30 23:25:38 +02:00
Matthias Fechner 69a62ce4ea security/rubygem-doorkeeper-openid_connect: update to 1.8.3 
Required for gitlab-ce 15.7 update
Changelog:
https://github.com/doorkeeper-gem/doorkeeper-openid_connect/blob/master/CHANGELOG.md
 2023-01-30 23:25:38 +02:00
Matthias Fechner e208423847 devel/rubygem-prometheus-client-mmap: update to 0.18.0 
Required for gitlab-ce 15.7 update
Changelog:
https://gitlab.com/gitlab-org/ruby/gems/prometheus-client-mmap/-/blob/master/CHANGELOG.md
 2023-01-30 23:25:38 +02:00
Matthias Fechner d657508c92 devel/rubygem-i18n_data: update to 0.15.0 
Required for gitlab-ce 15.7 update
Changelog:
https://github.com/grosser/i18n_data/commits/master
 2023-01-30 23:25:38 +02:00
Matthias Fechner 52963a43fd devel/rubygem-gitlab-dangerfiles: update to 3.6.4 
Required for gitlab-ce 15.7 upgrade
Changelog:
https://gitlab.com/gitlab-org/ruby/gems/gitlab-dangerfiles/-/releases
 2023-01-30 23:25:38 +02:00
Matthias Fechner d623e06904 devel/rubygem-countries: update to 4.1.3 
Required for gitlab-ce 15.7 upgrade
Changelog:
https://github.com/countries/countries/blob/master/CHANGELOG.md
 2023-01-30 23:25:38 +02:00
Matthias Fechner 84cdf511ee devel/rubygem-simple_po_parser: new port required for gitlab-ce 15.7 2023-01-30 23:25:38 +02:00
Neel Chauhan 993c11758e sysutils/froxlor: Update to 2.0.10 2023-01-30 13:15:57 -08:00
Ashish SHUKLA 3011e9ace5
devel/soft-serve: Update to 0.4.5 2023-01-30 21:05:02 +00:00
Rainer Hurling 4c64b6485c devel/py-pytoolconfig: Update to 1.2.5 
Changelog: https://github.com/bagel897/pytoolconfig/releases/tag/v1.2.5
 2023-01-30 21:44:46 +01:00
Alex S 6a7bf763cf games/linux-steam-utils: update to 20230130 
Changes: 20221113...20230130

PR:	269089
 2023-01-30 12:42:28 -08:00
Ralf van der Enden e8218ae6e5 sysutils/vagrant: update to 2.3.4 
PR:		269248
Approved by:	joe AT thrallingpenguin DOT com (maintainer)
 2023-01-30 12:41:06 -08:00
Jason W. Bacon 3c080735d4 sysutils/filevercmp: Mark deprecated 
Dependent ports use git submodules now
 2023-01-30 14:37:28 -06:00
Jason W. Bacon 595d0dabcf biology/wfa2-lib: Exact gap-affine algorithm using homology 
The wavefront alignment (WFA) algorithm is an exact gap-affine
algorithm that takes advantage of homologous regions between the
sequences to accelerate the alignment process.  Unlike traditional
dynamic programming algorithms that run in quadratic time, the WFA runs
in time O(ns+s^2), proportional to the sequence length n and the
alignment score s, using O(s^2) memory (or O(s) using the
ultralow/BiWFA mode). Moreover, the WFA algorithm exhibits simple
computational patterns that the modern compilers can automatically
vectorize for different architectures without adapting the code.
 2023-01-30 13:09:02 -06:00
Florian Smeets 02388ae491 sysutils/munin-{master,node}: change cron job install 
Don't rely on directly calling crontab(1) to install the cron job, use
the etc/cron.d directory for which we've had support for a while. This
fixes installing munin-master using pkg -r as crontab(1) installed the
cron job on the host system not in the specified alternative root
otherwise.

Completely remove pkg-install, that also removes the automatic migration
for newsyslog files after src revision r340318 it's been 4 years and a
bit.

Leave the pkg-deinstall script for a while to make sure that the
automatically installed cron jobs via crontab(1) are removed.

PR:		258072
Reported by:	Tassilo Philipp <tphilipp@potion-studios.com>
Tested by:	Tassilo Philipp <tphilipp@potion-studios.com>
 2023-01-30 19:46:33 +01:00
Neel Chauhan 32a94e5a53 editors/gnome-latex: Update to 3.44.0 2023-01-30 10:19:42 -08:00
Neel Chauhan b2a591c3ba editors/gedit: Update to 44.2 2023-01-30 10:19:42 -08:00
Neel Chauhan 08b4733c36 x11-toolkits/tepl6: Update to 6.4.0 2023-01-30 10:19:42 -08:00
Christian Weisgerber 124ad05ebc devel/got: update to 0.83 
User-visible changes:
- got commit editor now shows log messages from backout and cherrypick
- new cherrypick/backout -l option to show recorded log messages
- new cherrypick/backout -X option to discard recorded log messages
 2023-01-30 18:01:27 +00:00
Piotr Kubaj 86bc0033ce sysutils/UEFITool: update to 63 2023-01-30 17:27:36 +00:00
Alexey Dokuchaev e6ba751c77 lang/libhx: update the port to version 4.10 
While here, do not try to append to the previously undefined variable.

Reported by:	portscout
 2023-01-30 16:40:58 +00:00
Po-Chuan Hsieh 0cd372244f
www/Makefile: Hook node18, node19, npm-node19 and yarn-node19 (followup of fa93fdc383) 
Reported by:	antoine
 2023-01-31 00:22:18 +08:00
David O'Rourke 8b5d2b9a9e sysutils/node_exporter: update to 1.5.0 
ChangeLog: https://github.com/prometheus/node_exporter/blob/master/CHANGELOG.md

PR:		269154
Reported by:	dor.bsd@xm0.uk (maintainer)
MFH:		2023Q1 (security fixes)
Security:	CVE-2022-27191 CVE-2022-27664 CVE-2022-46146
 2023-01-30 17:16:39 +01:00
Yuri Victorovich d663cc2f24 science/py-qiskit-optimization: Update 0.4.0-3 → 0.5.0 
Reported by:	portscout
 2023-01-30 07:10:38 -08:00
Jan Beich 6c8d6a7750 x11-servers/xwayland-devel: improve error messages after 96381f9418 
Mainly when the process has disappeared.
 2023-01-30 14:50:46 +00:00
Po-Chuan Hsieh cd84e476b7
www/npm*: Fix build_fs_violation of dependent ports in poudriere (with -t flag) 
- Bump PORTREVISION for package change

from textproc/kibana7 log:
=>> Checking for filesystem violations... done
=>> Error: Filesystem touched during build:
extra: usr/local/lib/node_modules/npm/node_modules/node-gyp/gyp/pylib/gyp/__pycache__/input.cpython-39.pyc
extra: usr/local/lib/node_modules/npm/node_modules/node-gyp/gyp/pylib/gyp/__pycache__/common.cpython-39.pyc
extra: usr/local/lib/node_modules/npm/node_modules/node-gyp/gyp/pylib/gyp/__pycache__/simple_copy.cpython-39.pyc
extra: usr/local/lib/node_modules/npm/node_modules/node-gyp/gyp/pylib/gyp/__pycache__/xcode_emulation.cpython-39.pyc
extra: usr/local/lib/node_modules/npm/node_modules/node-gyp/gyp/pylib/gyp/__pycache__/__init__.cpython-39.pyc
extra: usr/local/lib/node_modules/npm/node_modules/node-gyp/gyp/pylib/gyp/generator/__pycache__/__init__.cpython-39.pyc
extra: usr/local/lib/node_modules/npm/node_modules/node-gyp/gyp/pylib/gyp/generator/__pycache__/make.cpython-39.pyc

from textproc/kibana8 log:
=>> Checking for filesystem violations... done
=>> Error: Filesystem touched during build:
extra: usr/local/lib/node_modules/npm/node_modules/node-gyp/gyp/pylib/gyp/generator/__pycache__/make.cpython-39.pyc
extra: usr/local/lib/node_modules/npm/node_modules/node-gyp/gyp/pylib/gyp/generator/__pycache__/__init__.cpython-39.pyc
extra: usr/local/lib/node_modules/npm/node_modules/node-gyp/gyp/pylib/gyp/__pycache__/xcode_emulation.cpython-39.pyc
extra: usr/local/lib/node_modules/npm/node_modules/node-gyp/gyp/pylib/gyp/__pycache__/input.cpython-39.pyc
extra: usr/local/lib/node_modules/npm/node_modules/node-gyp/gyp/pylib/gyp/__pycache__/__init__.cpython-39.pyc
extra: usr/local/lib/node_modules/npm/node_modules/node-gyp/gyp/pylib/gyp/__pycache__/common.cpython-39.pyc
extra: usr/local/lib/node_modules/npm/node_modules/node-gyp/gyp/pylib/gyp/__pycache__/simple_copy.cpython-39.pyc
 2023-01-30 22:45:11 +08:00
Po-Chuan Hsieh f5f4cf1f8b
UPDATING: Document nodejs changes 2023-01-30 22:45:11 +08:00
Baptiste Daroussin cc9a30d2dc gtk2: remove false dependency on gtk2 2023-01-30 15:43:40 +01:00
Nicola Vitale d7dd628265
audio/py-pyradio: Fix a runtime error (missing icon) 
- When notifications are enabled and the user doesn't have a custom icon
  the program raises a Python Exception, because it doesn't find the default one.
  The patch was provided by Spiros Georgaras (upstream) via email.

- Bump PORTREVISION
 2023-01-30 15:38:18 +01:00
Jan Beich 23b864937c x11-servers/xwayland-devel: update to 21.0.99.1.384 
Changes:	d67383a69...2ef5ef57b
 2023-01-30 14:32:09 +00:00
Jan Beich 96381f9418 x11-servers/xwayland-devel: better support XRes extension 
https://gitlab.freedesktop.org/xorg/xserver/-/commit/1e933665bef2
 2023-01-30 14:32:08 +00:00
Po-Chuan Hsieh ce96861caf
*/py-: Fix MASTER_SITES after CHEESESHOP to PYPI trasition 
With hat:	python
 2023-01-30 22:30:57 +08:00
Po-Chuan Hsieh fa93fdc383
Framework: Rewrite nodejs.mk and reorganize www/{node,npm,yarn} 
The current USES=nodejs has the following issues:
- www/node is not the default version while www/node16 is.
- It also means inconsistent naming of node ports.
- www/npm duplicates with www/npm-node16.
- www/yarn duplicates with www/yarn-node16.

The notable changes are introduced to fix the above issues:
- Rewrite Mk/Uses/nodejs.mk.
- Add new LTS version of nodejs (www/noe18).
- Add new current version of nodejs (www/node19).
- Change default nodejs version from 16 to 18 (latest LTS).
- Use consistent naming for all supported node versions.
- Convert www/node, www/npm and www/yarn to meta ports.

After this commit:
- All supported node versions are named as node{14,16,18,19}
- www/node is a meta port which depends on the default version (e.g. www/node18)
- www/npm is a meta port which depends on the default version (e.g. www/npm-node18)
- www/yarn is a meta port which depends on the default version (e.g. www/yarn-node18)
- Bump PORTREVISION of dependent ports for dependency change (from www/node16 to www/node18)

Discussed with:	jrm, otis, pizzamig
 2023-01-30 22:20:38 +08:00
Po-Chuan Hsieh a58124c5ff
*/py-: Fix MASTER_SITES after CHEESESHOP to PYPI trasition 2023-01-30 22:18:07 +08:00
Baptiste Daroussin e12133330b x11-toolkits/vdk: remove 
Depends on EOLed GTk+2.0 and not depended on in the ports tree
 2023-01-30 14:59:55 +01:00
Baptiste Daroussin fd067017d4 x11-toolkits/gtkmathview: remove 
Depends on EOLed GTk+2.0 and not depended on in the ports tree
 2023-01-30 14:49:55 +01:00
Baptiste Daroussin 1f441152f2 MOVED: add missing | 
Reported by:	Tomoaki AOKI <junchoon@dec.sakura.ne.jp>
 2023-01-30 14:49:54 +01:00
Sergei Vyshenski dd3678c650 security/p5-openxpki{-i18n}: Update to 3.24.1 
ChangeLog:	https://github.com/openxpki/openxpki/compare/v3.22.2...v3.24.1
PR:		269041
 2023-01-30 13:05:30 +00:00