Ricardo Wurmus d0bd632f89 import: Add Bioconductor importer and updater. ...

* guix/import/cran.scm (%bioconductor-updater,
latest-bioconductor-release, bioconductor-package?): New procedures.
(cran->guix-package): Support repositories other than CRAN.
(%bioconductor-url, %bioconductor-svn-url): New variables.
(description->package): Update signature to distinguish between packages
from different repositories.
(latest-release): Rename procedure ...
(latest-cran-release): ... to this.
(cran-package?): Do not assume all R packages are available on CRAN.
* tests/cran.scm: Update tests.
* guix/scripts/import/cran.scm: Add "--archive" option and default to
CRAN.
* guix/scripts/refresh.scm (%updaters): Add "%bioconductor-updater".
* doc/guix.texi: Document Bioconductor importer and updater.

2016-01-20 12:41:28 +01:00

..

base32.scm

base32: Use a custom error condition instead of 'misc-error'.

2015-05-31 22:39:48 +02:00

base64.scm

substitute-binary: Support the Signature field of a narinfo file.

2014-03-30 12:02:10 +02:00

build-utils.scm

tests: Unset 'LOCPATH' before running bootstrap program.

2015-09-24 21:21:02 +02:00

builders.scm

tests: Skip tests that would fail due to the shebang length.

2015-02-24 00:01:34 +01:00

challenge.scm

Add 'guix challenge'.

2015-10-20 00:57:36 +02:00

containers.scm

build: container: Add feature test predicates.

2015-11-03 11:41:04 -05:00

cpan.scm

import: cpan: Update tests for dependency handling.

2015-02-20 16:05:15 -06:00

cpio.scm

Add (guix cpio).

2015-06-24 18:05:03 +02:00

cran.scm

import: Add Bioconductor importer and updater.

2016-01-20 12:41:28 +01:00

cve-sample.xml

Add (guix cve).

2015-11-26 22:35:01 +01:00

cve.scm

Add (guix cve).

2015-11-26 22:35:01 +01:00

derivations.scm

derivations: Add test in keep-going mode.

2016-01-19 21:59:58 +01:00

elpa.scm

tests: Use the right identifier in tests/elpa.scm.

2015-07-08 15:30:49 +02:00

file-systems.scm

file-systems: 'uuid' raises a syntax error for invalid UUIDs.

2015-07-16 09:49:36 +02:00

gem.scm

import: gem: Fix minor bug and add unit test.

2015-09-01 20:00:01 -04:00

gexp.scm

tests: Skip 'program-file' test when shebang is too long.

2015-11-04 11:59:46 +01:00

gnu-maintenance.scm

gnu-maintenance: Add tests for 'release-file?'.

2015-12-07 23:32:01 +01:00

graph.scm

graph: %BAG-WITH-ORIGINS-NODE-TYPE includes the origin's guile.

2016-01-02 22:25:41 +01:00

gremlin.scm

gremlin: Add support for the expansion of $ORIGIN in RUNPATH.

2015-04-23 18:52:40 +02:00

guix-archive.sh

guix archive: Add '--extract'.

2015-10-19 10:10:47 +02:00

guix-authenticate.sh

authenticate: Allow signatures with binary data to be written to stdout.

2014-04-22 11:30:58 +02:00

guix-build.sh

scripts: build: Add --file option.

2015-10-28 08:40:16 -04:00

guix-daemon.sh

store: Add 'query-failed-paths' and 'clear-failed-paths' RPCs.

2015-09-28 22:54:04 +02:00

guix-download.sh

guix download: Fail when more than one URL is passed.

2015-11-23 17:48:35 +01:00

guix-environment-container.sh

environment: Correctly handle abnormal exits.

2015-11-21 22:26:13 +01:00

guix-environment.sh

tests: Set 'SHELL' for 'guix environment'.

2015-11-02 23:42:31 +01:00

guix-gc.sh

guix gc: Error out when extra arguments are passed.

2015-11-11 23:29:20 +01:00

guix-graph.sh

graph: Add '%bag-with-origins-node-type'.

2015-11-23 23:34:15 +01:00

guix-hash.sh

guix hash: Add '--recursive'.

2014-02-21 23:49:52 +01:00

guix-lint.sh

lint: Fix argument parsing when several packages are specified.

2015-01-28 14:00:58 +01:00

guix-package-net.sh

guix package: '--search-paths' can report combined search paths.

2015-11-11 00:37:50 +01:00

guix-package.sh

guix package: Allow multiple '--search' flags.

2016-01-05 00:28:42 +01:00

guix-register.sh

guix-register: Perform deduplication even when --prefix is passed.

2015-06-10 13:47:58 +02:00

guix-system.sh

gexp: 'local-file' resolves relative file names.

2015-12-14 19:57:42 +01:00

hackage.scm

import: hackage: Add new tests.

2015-11-26 18:17:23 +01:00

hash.scm

hash: Add 'open-sha256-input-port', for Guile > 2.0.9.

2014-01-24 00:01:49 +01:00

lint.scm

lint: Do not report already-patched vulnerabilities.

2015-11-28 16:15:31 +01:00

monads.scm

monads: Fix 'liftN' fallback case.

2015-09-04 18:31:06 +02:00

nar.scm

tests: Work around Btrfs handling of nlink for empty directories.

2015-08-26 00:43:36 +02:00

packages.scm

packages: Add 'package-transitive-native-search-paths'.

2015-12-20 22:34:22 +01:00

pk-crypto.scm

authenticate: Allow signatures with binary data to be written to stdout.

2014-04-22 11:30:58 +02:00

pki.scm

pki: Add 'signature-case' macro.

2014-03-31 23:34:20 +02:00

profiles.scm

profiles: Honor search paths of propagated inputs.

2015-12-20 22:34:22 +01:00

publish.scm

tests: Fix 'publish' test for nix-base32 format.

2015-07-18 17:05:28 +03:00

pypi.scm

import: pypi: Use "pypi-uri" instead of building the URL manually.

2015-11-03 21:38:13 +01:00

records.scm

tests: Avoid sequence of zero expressions.

2015-06-11 23:33:32 +02:00

scripts.scm

Add (guix scripts).

2015-09-18 21:42:06 +03:00

services.scm

services: Add 'dmd-service-back-edges'.

2015-10-14 21:39:06 +02:00

sets.scm

Add (guix sets).

2015-01-11 23:50:01 +01:00

signing-key.pub

daemon: Implement signed archive import/export.

2013-12-20 17:17:42 +01:00

signing-key.sec

daemon: Implement signed archive import/export.

2013-12-20 17:17:42 +01:00

size.scm

tests: Adjust tests for new bootstrap Guile.

2015-07-12 01:27:00 +02:00

snix.scm

utils: Remove Nixpkgs helpers.

2015-10-06 23:51:04 +02:00

store.scm

store: Allow clients to request multiple builds.

2015-12-08 23:58:12 +01:00

substitute.scm

substitute: Honor all the specified server URLs.

2015-10-28 12:04:03 +01:00

syscalls.scm

build: container: Add feature test predicates.

2015-11-03 11:41:04 -05:00

test.drv

Add unit test for derivation parsing and output.

2012-04-19 23:09:55 +02:00

ui.scm

ui: Gracefully handle Unicode description strings.

2015-09-24 22:04:51 +02:00

union.scm

tests: Factorize the network reachability test.

2015-02-24 00:01:34 +01:00

utils.scm

utils: Add 'ensure-keyword-arguments'.

2016-01-06 23:08:22 +01:00