19afbea136
* gnu/packages/julia.scm (julia)[inputs]: Replace "gfortran-4.8" with "gfortran". * gnu/packages/machine-learning.scm (randomjungle)[native-inputs]: Likewise. * gnu/packages/maths.scm (arpack-ng, lapack, petsc, superlu) (superlu-dist, openblas, openspecfun, atlas)[inputs]: Likewise. (octave)[native-inputs]: Likewise. (gmsh)[propagated-inputs]: Likewise. * gnu/packages/mpi.scm (openmpi)[inputs]: Likewise. * gnu/packages/python.scm (python-numpy-bootstrap)[native-inputs]: Likewise. * gnu/packages/python.scm (python-scipy)[native-inputs]: Likewise. * gnu/packages/statistics.scm (r)[inputs]: Replace "gfortran-4.9" with "gfortran".
131 lines
5.3 KiB
Scheme
131 lines
5.3 KiB
Scheme
;;; GNU Guix --- Functional package management for GNU
|
|
;;; Copyright © 2014 Eric Bavier <bavier@member.fsf.org>
|
|
;;; Copyright © 2014 Ludovic Courtès <ludo@gnu.org>
|
|
;;; Copyright © 2014 Ian Denhardt <ian@zenhack.net>
|
|
;;;
|
|
;;; This file is part of GNU Guix.
|
|
;;;
|
|
;;; GNU Guix is free software; you can redistribute it and/or modify it
|
|
;;; under the terms of the GNU General Public License as published by
|
|
;;; the Free Software Foundation; either version 3 of the License, or (at
|
|
;;; your option) any later version.
|
|
;;;
|
|
;;; GNU Guix is distributed in the hope that it will be useful, but
|
|
;;; WITHOUT ANY WARRANTY; without even the implied warranty of
|
|
;;; MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the
|
|
;;; GNU General Public License for more details.
|
|
;;;
|
|
;;; You should have received a copy of the GNU General Public License
|
|
;;; along with GNU Guix. If not, see <http://www.gnu.org/licenses/>.
|
|
|
|
(define-module (gnu packages mpi)
|
|
#:use-module (guix packages)
|
|
#:use-module ((guix licenses)
|
|
#:hide (expat))
|
|
#:use-module (guix download)
|
|
#:use-module (guix utils)
|
|
#:use-module (guix build-system gnu)
|
|
#:use-module (gnu packages)
|
|
#:use-module (gnu packages gcc)
|
|
#:use-module (gnu packages linux)
|
|
#:use-module (gnu packages pciutils)
|
|
#:use-module (gnu packages xorg)
|
|
#:use-module (gnu packages gtk)
|
|
#:use-module (gnu packages xml)
|
|
#:use-module (gnu packages ncurses)
|
|
#:use-module (gnu packages pkg-config)
|
|
#:use-module (gnu packages valgrind))
|
|
|
|
(define-public hwloc
|
|
(package
|
|
(name "hwloc")
|
|
(version "1.9")
|
|
(source (origin
|
|
(method url-fetch)
|
|
(uri (string-append "http://www.open-mpi.org/software/hwloc/v"
|
|
version "/downloads/hwloc-"
|
|
version ".tar.bz2"))
|
|
(sha256
|
|
(base32
|
|
"0zjgiili2a8v63s8ly3a8qp8ibxv1jw3zbgm7diic3w1qgqiza14"))))
|
|
(build-system gnu-build-system)
|
|
(arguments
|
|
;; Enable libpci support, which effectively makes hwloc GPLv2+.
|
|
'(#:configure-flags '("--enable-libpci")))
|
|
(inputs
|
|
`(("libx11" ,libx11)
|
|
("cairo" ,cairo)
|
|
("ncurses" ,ncurses)
|
|
("expat" ,expat)))
|
|
(native-inputs
|
|
`(("pkg-config" ,pkg-config)))
|
|
(propagated-inputs
|
|
;; 'hwloc.pc' refers to libpci and libnuma, hence the propagation.
|
|
`(("numactl" ,numactl)
|
|
("pciutils" ,pciutils)))
|
|
(home-page "http://www.open-mpi.org/projects/hwloc/")
|
|
(synopsis "Abstraction of hardware architectures")
|
|
(description
|
|
"hwloc provides a portable abstraction (across OS,
|
|
versions, architectures, ...) of the hierarchical topology of modern
|
|
architectures, including NUMA memory nodes, sockets, shared caches, cores and
|
|
simultaneous multithreading. It also gathers various attributes such as cache
|
|
and memory information. It primarily aims at helping high-performance
|
|
computing applications with gathering information about the hardware so as to
|
|
exploit it accordingly and efficiently.
|
|
|
|
hwloc may display the topology in multiple convenient formats. It also offers
|
|
a powerful programming interface to gather information about the hardware,
|
|
bind processes, and much more.")
|
|
|
|
;; But see above about linking against libpci.
|
|
(license bsd-3)))
|
|
|
|
(define-public openmpi
|
|
(package
|
|
(name "openmpi")
|
|
(version "1.8.1")
|
|
(source
|
|
(origin
|
|
(method url-fetch)
|
|
(uri (string-append "http://www.open-mpi.org/software/ompi/v"
|
|
(version-major+minor version)
|
|
"/downloads/openmpi-" version ".tar.bz2"))
|
|
(sha256
|
|
(base32
|
|
"13z1q69f3qwmmhpglarfjminfy2yw4rfqr9jydjk5507q3mjf50p"))))
|
|
(build-system gnu-build-system)
|
|
(inputs
|
|
`(("hwloc" ,hwloc)
|
|
("gfortran" ,gfortran)
|
|
("valgrind" ,valgrind)))
|
|
(native-inputs
|
|
`(("pkg-config" ,pkg-config)))
|
|
(arguments
|
|
`(#:configure-flags `("--enable-static"
|
|
"--enable-oshmem"
|
|
;; Thread support causes some applications to hang
|
|
;; "--enable-event-thread-support"
|
|
;; "--enable-opal-multi-threads"
|
|
;; "--enable-orte-progress-threads"
|
|
;; "--enable-mpi-thread-multiple"
|
|
"--enable-mpi-ext=all"
|
|
"--with-devel-headers"
|
|
"--enable-debug"
|
|
"--enable-memchecker"
|
|
,(string-append "--with-valgrind="
|
|
(assoc-ref %build-inputs "valgrind"))
|
|
,(string-append "--with-hwloc="
|
|
(assoc-ref %build-inputs "hwloc")))))
|
|
(home-page "http://www.open-mpi.org")
|
|
(synopsis "MPI-2 implementation")
|
|
(description
|
|
"The Open MPI Project is an MPI-2 implementation that is developed and
|
|
maintained by a consortium of academic, research, and industry partners. Open
|
|
MPI is therefore able to combine the expertise, technologies, and resources
|
|
from all across the High Performance Computing community in order to build the
|
|
best MPI library available. Open MPI offers advantages for system and
|
|
software vendors, application developers and computer science researchers.")
|
|
;; See file://LICENSE
|
|
(license bsd-2)))
|