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guix-play/gnu/packages
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Ricardo Wurmus 1eb852ff06
gnu: r-cghcall: Update to 2.64.0. 
* gnu/packages/bioconductor.scm (r-cghcall): Update to 2.64.0.

Change-Id: Ia1280ca4acbd79f1ab0ee3e902d6aec3d5b1c682
2023-11-03 22:49:18 +01:00
..
aux-files
Revert "gnu: linux-libre@6: Enable Coreboot framebuffer support (again)."
2023-10-29 02:00:00 +02:00
patches
Revert "gnu: lvm2: Remove systemd rule."
2023-10-31 22:15:33 +01:00
abduco.scm
…
abiword.scm
…
accessibility.scm
…
acct.scm
…
acl.scm
…
ada.scm
…
admin.scm
gnu: ansible: Update to 8.5.0.
2023-10-30 11:17:43 +00:00
adns.scm
…
agda.scm
gnu: agda-cubical: Add source file-name.
2023-10-11 08:14:00 +03:00
aidc.scm
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algebra.scm
…
android.scm
…
animation.scm
…
anthy.scm
…
antivirus.scm
…
apl.scm
gnu: Add dzaima-apl.
2023-10-18 22:40:41 +02:00
apparmor.scm
…
apple.scm
gnu: Add apple-bash.
2023-10-05 23:14:54 +02:00
apr.scm
…
arcan.scm
…
aspell.scm
…
assembly.scm
…
astronomy.scm
gnu: python-radio-beam: Update to 0.3.6.
2023-10-31 13:15:25 -04:00
attr.scm
…
audio.scm
gnu: ardour: Use G-expressions.
2023-10-10 09:36:31 +02:00
augeas.scm
…
authentication.scm
…
autogen.scm
…
autotools.scm
…
avahi.scm
…
avr-xyz.scm
gnu: Add lufa.
2023-10-10 00:06:13 -04:00
avr.scm
gnu: make-avr-toolchain: Add a #:xgcc argument.
2023-10-10 00:06:12 -04:00
axoloti.scm
…
backup.scm
…
barrier.scm
…
base.scm
gnu: glibc: Fix CVE-2023-4911.
2023-10-12 06:49:02 +02:00
bash.scm
…
batik.scm
…
bdw-gc.scm
…
benchmark.scm
…
bioconductor.scm
gnu: r-cghcall: Update to 2.64.0.
2023-11-03 22:49:18 +01:00
bioinformatics.scm
gnu: Add r-miamiplot.
2023-11-03 14:10:13 +01:00
bison.scm
…
bittorrent.scm
gnu: transmission: Update to 4.0.4.
2023-10-30 11:17:43 +00:00
books.scm
…
boost.scm
…
bootloaders.scm
gnu: patman: Apply patch for new Change-Id setting.
2023-10-22 16:09:04 -04:00
bootstrap.scm
…
bqn.scm
…
browser-extensions.scm
gnu: passff-host: Fix builder issues.
2023-10-29 15:46:20 +01:00
build-tools.scm
…
busybox.scm
…
c.scm
…
calcurse.scm
…
calendar.scm
…
ccache.scm
…
cdrom.scm
gnu: libcue: Update to 2.3.0 [security fixes].
2023-10-11 21:52:13 -04:00
cedille.scm
…
certs.scm
…
check.scm
gnu: guile-proba: Fix environment vars in Guile Proba's script.
2023-10-14 15:31:28 +02:00
chemistry.scm
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chez.scm
…
chicken.scm
…
chromium.scm
…
ci.scm
gnu: cuirass: Update to 1.2.0.
2023-10-30 00:19:07 +01:00
cinnamon.scm
…
clojure.scm
…
cluster.scm
…
cmake.scm
gnu: cmake-minimal: Remove ‘hidden’ property.
2023-10-24 00:02:14 +02:00
cobol.scm
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code.scm
…
commencement.scm
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compression.scm
…
compton.scm
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configuration-management.scm
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conky.scm
…
connman.scm
gnu: connman: Update to 1.42.
2023-10-15 02:00:00 +02:00
containers.scm
gnu: distrobox: Update to 1.5.0.2.
2023-10-13 17:45:56 +02:00
convmv.scm
…
cook.scm
…
coq.scm
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cpio.scm
…
cpp.scm
gnu: Add static-abseil-cpp.
2023-10-30 12:25:47 +01:00
cppi.scm
…
cran.scm
gnu: Add r-fancova.
2023-11-03 22:49:10 +01:00
crates-graphics.scm
gnu: Add rust-wayland-protocols-wlr-0.1.
2023-10-22 15:03:29 +03:00
crates-gtk.scm
gnu: Add rust-gstreamer-audio-0.18.
2023-10-24 14:39:44 +03:00
crates-io.scm
gnu: rust-cpal-0.13: Accept any version of jack.
2023-10-24 14:53:34 +03:00
cross-base.scm
…
crypto.scm
Revert "build: cargo-build-system: Disable tests by default."
2023-10-18 11:36:31 +03:00
cryptsetup.scm
…
cups.scm
gnu: cups: Fix cross-compiling.
2023-10-26 11:30:01 +02:00
curl.scm
gnu: curlie: Update to 1.7.2.
2023-10-25 11:59:58 +02:00
cvassistant.scm
…
cybersecurity.scm
…
cyrus-sasl.scm
…
darwin.scm
…
databases.scm
gnu: Add aerich.
2023-10-30 11:17:42 +00:00
datamash.scm
…
datastructures.scm
…
dav.scm
…
dbm.scm
…
dc.scm
…
debian.scm
…
debug.scm
…
dejagnu.scm
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dezyne.scm
gnu: dezyne: Update to 2.17.7.
2023-10-30 10:14:37 +01:00
dhall.scm
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dico.scm
…
dictionaries.scm
…
diffoscope.scm
gnu: diffoscope: Update to 251.
2023-10-25 11:59:58 +02:00
digest.scm
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direct-connect.scm
…
disk.scm
…
display-managers.scm
gnu: Add dexy-color-sddm-theme.
2023-10-14 22:41:43 +02:00
distributed.scm
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django.scm
…
djvu.scm
…
dlang.scm
…
dns.scm
…
docbook.scm
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docker.scm
…
documentation.scm
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dunst.scm
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dvtm.scm
…
easyrpg.scm
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ebook.scm
…
ed.scm
…
education.scm
gnu: go-github-com-stretchr-testify: Move to (gnu packages golang-check).
2023-10-22 22:02:56 -04:00
efi.scm
…
electronics.scm
…
elf.scm
…
elixir.scm
…
elm.scm
…
emacs-xyz.scm
gnu: emacs-ox-rss: Update upstream URL.
2023-11-03 09:46:02 +00:00
emacs.scm
gnu: emacs-next-minimal: Apply Guix patches.
2023-10-08 08:40:57 +02:00
embedded.scm
gnu: embedded: Do not use a prefix on the (gnu packages base) module.
2023-10-10 00:06:13 -04:00
emulators.scm
gnu: retroarch: Remove input labels.
2023-10-29 09:33:34 +08:00
enchant.scm
…
engineering.scm
gnu: Remove emacs-poke.
2023-10-21 16:07:58 +02:00
enlightenment.scm
…
entr.scm
…
erlang.scm
…
esolangs.scm
…
fabric-management.scm
…
fcitx5.scm
…
fcitx.scm
…
figlet.scm
…
file-systems.scm
gnu: go-github-com-jacobsa-oglemock: Move to (gnu packages golang-check)
2023-10-22 22:03:04 -04:00
file.scm
…
finance.scm
gnu: bitcoin-core: Update to 25.1.
2023-10-21 16:04:52 +02:00
firmware.scm
gnu: b43-tools: Use make-flags.
2023-10-31 22:32:53 +02:00
flashing-tools.scm
gnu: Add teensy-udev-rules.
2023-10-10 00:06:15 -04:00
flex.scm
…
fltk.scm
…
fonts.scm
gnu: font-terminus: Install the README.
2023-10-15 02:00:00 +02:00
fontutils.scm
gnu: Add psftools.
2023-10-15 02:00:00 +02:00
forth.scm
gnu: Add smithforth.
2023-10-08 23:43:50 +02:00
fpga.scm
…
freedesktop.scm
gnu: maliit-framework: Disable two mimpluginmanager tests.
2023-10-16 11:16:01 -04:00
freeipmi.scm
…
fribidi.scm
…
fsf.scm
…
ftp.scm
…
fvwm.scm
…
game-development.scm
gnu: godot: Update to 4.1.2.
2023-10-28 23:09:19 -04:00
games.scm
gnu: cockatrice: Update to 2.9.0.
2023-10-30 11:17:43 +00:00
gawk.scm
…
gcal.scm
…
gcc.scm
gnu: custom-gcc: Set upstream name.
2023-10-28 22:03:35 +03:00
gd.scm
…
gdb.scm
…
genealogy.scm
…
genimage.scm
…
geo.scm
gnu: python-metpy: Update to 1.5.1.
2023-10-12 21:48:47 -03:00
gettext.scm
…
ghostscript.scm
…
gimp.scm
…
gkrellm.scm
…
gl.scm
gnu: mesa: Fix cross-compiling.
2023-10-15 13:00:24 +03:00
glib.scm
…
gnome-xyz.scm
gnu: Add gnome-shell-extension-night-theme-switcher.
2023-10-07 11:29:47 -04:00
gnome.scm
gnu: mutter: Remove dependency on (guix build syscalls).
2023-10-23 11:56:53 +02:00
gnu-doc.scm
…
gnu-pw-mgr.scm
…
gnucash.scm
…
gnunet.scm
…
gnupg.scm
…
gnustep.scm
…
gnuzilla.scm
gnu: icecat: Update to 115.4.0-guix0-preview1 [security fixes].
2023-10-24 15:56:39 -04:00
gobby.scm
…
golang-check.scm
gnu: go-github-com-alecthomas-assert: Move to (gnu packages golang-check).
2023-10-22 22:17:31 -04:00
golang.scm
gnu: go-github-com-hjson-hjson-go: Update to 4.3.1.
2023-11-03 10:14:06 +00:00
gperf.scm
…
gpodder.scm
…
gps.scm
…
graph.scm
…
graphics.scm
gnu: mmg: Update to 5.7.2.
2023-10-17 10:27:21 +01:00
graphviz.scm
…
groff.scm
…
groovy.scm
…
gsasl.scm
…
gstreamer.scm
…
gtk.scm
gnu: at-spi2-core: Skip tests on powerpc-linux.
2023-10-23 13:11:27 +03:00
guile-wm.scm
…
guile-xyz.scm
gnu: guile-netlink: Update to 1.2.1.
2023-11-03 10:00:41 +00:00
guile.scm
gnu: guile-next: Update to 3.0.9-0.79e836b.
2023-10-13 19:31:22 -04:00
gv.scm
…
gxmessage.scm
…
hardware.scm
…
haskell-apps.scm
…
haskell-check.scm
…
haskell-crypto.scm
…
haskell-web.scm
…
haskell-xyz.scm
…
haskell.scm
…
haxe.scm
…
heads.scm
…
hexedit.scm
…
high-availability.scm
…
hugs.scm
…
hunspell.scm
…
hurd.scm
…
hyperledger.scm
…
i2p.scm
…
ibus.scm
…
icu4c.scm
…
idris.scm
…
idutils.scm
…
image-processing.scm
…
image-viewers.scm
…
image.scm
gnu: exiv2: Get rid of reference to GCC.
2023-10-20 17:45:30 +08:00
imagemagick.scm
…
inklingreader.scm
…
inkscape.scm
…
installers.scm
…
instrumentation.scm
…
ipfs.scm
gnu: go-ipfs: Update to 0.15.0.
2023-10-24 18:06:21 +02:00
irc.scm
gnu: go-github-com-stretchr-testify: Move to (gnu packages golang-check).
2023-10-22 22:02:56 -04:00
irods.scm
…
iso-codes.scm
…
jami.scm
…
java-bootstrap.scm
…
java-compression.scm
…
java-graphics.scm
…
java-maths.scm
…
java-rdf.scm
…
java-xml.scm
…
java.scm
gnu: abcl: Update to 1.9.2.
2023-10-25 10:42:22 +02:00
javascript.scm
…
jemalloc.scm
…
jose.scm
…
julia-jll.scm
…
julia-xyz.scm
…
julia.scm
…
jupyter.scm
gnu: Add python-jupyterlite-sphinx.
2023-10-25 16:58:40 +02:00
kawa.scm
…
kde-frameworks.scm
…
kde-games.scm
…
kde-internet.scm
…
kde-multimedia.scm
…
kde-pim.scm
…
kde-plasma.scm
…
kde-systemtools.scm
…
kde-utils.scm
…
kde.scm
…
kerberos.scm
…
kodi.scm
…
language.scm
…
ld-wrapper.in
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lean.scm
…
lego.scm
…
less.scm
…
lesstif.scm
…
libbsd.scm
…
libcanberra.scm
…
libdaemon.scm
…
libedit.scm
…
libevent.scm
…
libffcall.scm
…
libffi.scm
…
libftdi.scm
…
libidn.scm
…
libphidget.scm
…
libreoffice.scm
…
libsigsegv.scm
…
libunistring.scm
…
libunwind.scm
…
libusb.scm
…
license.scm
…
lighting.scm
…
linphone.scm
…
linux.scm
Revert "gnu: lvm2: Remove systemd rule."
2023-10-31 22:15:33 +01:00
lirc.scm
…
lisp-check.scm
…
lisp-xyz.scm
gnu: cl-slime-swank: Update to 2.28-0.0cc2e73.
2023-10-24 14:38:45 +02:00
lisp.scm
gnu: eisl: Update to 3.50.
2023-10-25 11:05:59 +02:00
llvm.scm
gnu: clang-python-bindings: Embed version string.
2023-10-24 10:45:03 +02:00
logging.scm
…
logo.scm
…
loko.scm
…
lout.scm
…
lsof.scm
…
lua.scm
…
lxde.scm
…
lxqt.scm
…
m4.scm
…
machine-learning.scm
gnu: Add python-ml-collections.
2023-10-30 13:00:56 +01:00
magic-wormhole.scm
…
mail.scm
gnu: msmtp: Update to 1.8.25.
2023-11-03 09:46:02 +00:00
make-bootstrap.scm
…
man.scm
…
markup.scm
gnu: cmark-gfm: Update to 0.29.0.gfm.13.
2023-11-03 10:14:06 +00:00
marst.scm
…
mastodon.scm
gnu: tootle: Deprecate in favor of tuba.
2023-10-15 14:25:29 +03:00
mate.scm
…
maths.scm
gnu: Add popf.
2023-10-27 16:33:32 +02:00
matrix.scm
…
maven-parent-pom.scm
…
maven.scm
…
mc.scm
…
mcrypt.scm
…
medical.scm
…
mercury.scm
…
mes.scm
…
messaging.scm
gnu: weechat-wee-slack: Update to 2.10.1.
2023-10-20 14:08:41 +01:00
microcom.scm
…
minetest.scm
…
mingw.scm
…
moe.scm
…
mold.scm
…
monitoring.scm
…
moreutils.scm
…
motti.scm
…
mp3.scm
…
mpd.scm
gnu: mympd: Update to 12.1.1.
2023-10-25 11:59:58 +02:00
mpi.scm
…
mtools.scm
…
multiprecision.scm
…
music.scm
gnu: strawberry: Update to 1.0.21.
2023-11-03 09:46:02 +00:00
musl.scm
…
myrddin.scm
…
nano.scm
…
ncdu.scm
gnu: ncdu-1: Update to 1.19.
2023-10-20 10:00:04 +03:00
ncurses.scm
gnu: stfl: Fix cross-compiling.
2023-10-12 17:00:50 +03:00
netpbm.scm
…
nettle.scm
…
networking.scm
gnu: libcamera: Disable log_process test on aarch64.
2023-10-16 11:16:01 -04:00
nfs.scm
…
nickle.scm
…
nicotine.scm
…
nim.scm
…
ninja.scm
…
node-xyz.scm
…
node.scm
…
notcurses.scm
…
noweb.scm
…
nss.scm
gnu: nss: Fix cross-compiling.
2023-10-15 13:02:26 +03:00
ntp.scm
…
nutrition.scm
…
nvi.scm
…
ocaml.scm
gnu: unison: Update to 2.53.3.
2023-10-20 00:33:26 +02:00
ocr.scm
…
onc-rpc.scm
gnu: libtirpc: Keep reference to mit-krb5 when cross-compiling.
2023-10-15 13:04:04 +03:00
openbox.scm
…
opencl.scm
…
opencog.scm
…
openkinect.scm
…
openldap.scm
…
openpgp.scm
…
openstack.scm
…
orange.scm
…
orpheus.scm
…
ots.scm
…
package-management.scm
gnu: guix-build-coordinator: Update to 0-90.3446355.
2023-10-17 10:36:22 +01:00
pantheon.scm
…
parallel.scm
gnu: parallel: Update to 20231022.
2023-10-28 16:33:23 +02:00
pascal.scm
…
password-utils.scm
…
patchutils.scm
…
patool.scm
…
pciutils.scm
…
pcre.scm
…
pdf.scm
gnu: mupdf: Update to 1.23.4.
2023-11-03 10:14:06 +00:00
pem.scm
…
pep.scm
…
perl6.scm
…
perl-check.scm
…
perl-compression.scm
…
perl-maths.scm
…
perl-web.scm
…
perl.scm
…
phabricator.scm
…
photo.scm
…
php.scm
…
piet.scm
…
pikchr.scm
…
pkg-config.scm
…
plan9.scm
…
plotutils.scm
…
poedit.scm
…
polkit.scm
gnu: polkit: Remove dependency on (guix build syscalls).
2023-10-23 11:56:53 +02:00
popt.scm
…
potassco.scm
…
presentation.scm
…
pretty-print.scm
…
printers.scm
…
profiling.scm
…
prolog.scm
…
protobuf.scm
…
pth.scm
…
pulseaudio.scm
…
pumpio.scm
…
pure.scm
…
purescript.scm
…
pv.scm
…
pypy.scm
…
python-build.scm
…
python-check.scm
gnu: Add python-assertpy.
2023-10-25 16:58:40 +02:00
python-compression.scm
…
python-crypto.scm
Revert "build: cargo-build-system: Disable tests by default."
2023-10-18 11:36:31 +03:00
python-science.scm
gnu: python-trimesh: Update to 3.23.5.
2023-10-17 10:26:55 +01:00
python-web.scm
gnu: python-flask-restful-swagger: Add missing input.
2023-10-18 11:39:49 +03:00
python-xyz.scm
gnu: python-dm-tree: Use static abseil-cpp.
2023-10-30 12:25:47 +01:00
python.scm
…
qt.scm
gnu: qtwayland-5: Disable tst_surface test on aarch64-linux.
2023-10-16 11:16:01 -04:00
racket.scm
…
radio.scm
gnu: gqrx: Update to 2.17.3.
2023-10-25 11:26:59 +02:00
ragel.scm
…
rails.scm
…
raspberry-pi.scm
…
ratpoison.scm
…
rcm.scm
…
rdesktop.scm
…
rdf.scm
…
re2c.scm
…
readline.scm
…
rednotebook.scm
…
regex.scm
…
robotics.scm
…
rocm.scm
…
rpc.scm
…
rpm.scm
…
rrdtool.scm
…
rsync.scm
…
ruby.scm
…
rush.scm
…
rust-apps.scm
gnu: Add rust-cbindgen-0.26.
2023-10-26 12:04:01 -04:00
rust.scm
gnu: Add rust-1.73.
2023-10-23 09:29:37 +03:00
sagemath.scm
…
samba.scm
gnu: ppp: Update to 2.5.0.
2023-10-15 02:00:00 +02:00
sawfish.scm
…
scanner.scm
…
scheme.scm
…
screen.scm
…
scribus.scm
…
scsi.scm
…
sdl.scm
gnu: Add sdl2-gamecontrollerdb.
2023-10-27 16:33:33 +02:00
search.scm
…
security-token.scm
…
selinux.scm
…
sequoia.scm
Revert "build: cargo-build-system: Disable tests by default."
2023-10-18 11:36:31 +03:00
serialization.scm
gnu: Add python-flatbuffers.
2023-10-22 17:27:42 +02:00
serveez.scm
…
shells.scm
gnu: gash-utils: Fix build.
2023-10-15 12:28:19 +02:00
shellutils.scm
…
simh.scm
…
simulation.scm
…
skarnet.scm
…
skribilo.scm
…
slang.scm
…
smalltalk.scm
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sml.scm
…
solidity.scm
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sourcehut.scm
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speech.scm
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sphinx.scm
gnu: python-sphinx-gallery: Update to 0.14.0.
2023-10-25 16:58:40 +02:00
spice.scm
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spreadsheet.scm
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sqlite.scm
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squirrel.scm
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ssh.scm
gnu: mosh: Prepare for cross-building.
2023-10-15 02:00:00 +02:00
sssd.scm
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statistics.scm
gnu: r-logspline: Update to 2.1.21.
2023-10-31 21:57:59 +01:00
stb.scm
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stenography.scm
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storage.scm
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suckless.scm
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sugar.scm
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swig.scm
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sycl.scm
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sync.scm
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syncthing.scm
gnu: syncthing: Update to 1.25.0.
2023-11-03 10:14:06 +00:00
syndication.scm
Revert "build: cargo-build-system: Disable tests by default."
2023-10-18 11:36:31 +03:00
synergy.scm
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task-management.scm
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task-runners.scm
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tbb.scm
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tcl.scm
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telegram.scm
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telephony.scm
gnu: coturn: Update to 4.6.2.
2023-10-31 09:47:54 +01:00
terminals.scm
gnu: foot: Update to 1.16.2.
2023-11-03 09:59:41 +00:00
terraform.scm
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tex.scm
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texinfo.scm
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texlive.scm
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text-editors.scm
Revert "build: cargo-build-system: Disable tests by default."
2023-10-18 11:36:31 +03:00
textutils.scm
gnu: go-github-com-stretchr-testify: Move to (gnu packages golang-check).
2023-10-22 22:02:56 -04:00
time.scm
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tls.scm
gnu: gnutls@3.8: Do not rely expect ‘PATH_MAX’ definition on GNU/Hurd.
2023-10-24 00:02:14 +02:00
tmux.scm
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toolkits.scm
gnu: imgui@1.86: Adjust make-flags.
2023-10-09 00:05:57 -04:00
tor.scm
gnu: tor: Update to 0.4.8.7.
2023-10-24 18:06:21 +02:00
toys.scm
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tree-sitter.scm
gnu: tree-sitter: Re-indent.
2023-10-20 12:41:05 +04:00
tryton.scm
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tv.scm
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uglifyjs.scm
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uml.scm
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unicode.scm
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unrtf.scm
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upnp.scm
gnu: Add gerbera.
2023-10-28 17:38:13 +02:00
usb-modeswitch.scm
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uucp.scm
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valgrind.scm
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version-control.scm
gnu: go-github-com-stretchr-testify: Move to (gnu packages golang-check).
2023-10-22 22:02:56 -04:00
video.scm
gnu: Add ffmpeg-normalize.
2023-10-30 11:17:42 +00:00
vim.scm
gnu: neovim: Update to 0.9.4.
2023-11-03 10:01:29 +00:00
virtualization.scm
gnu: Sort use-module in (gnu packages virtualization) alphabetically.
2023-10-18 13:46:48 +04:00
vlang.scm
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vnc.scm
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vpn.scm
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vulkan.scm
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w3m.scm
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wdiff.scm
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weather.scm
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web-browsers.scm
gnu: nyxt: Update to 3.9.1.
2023-10-24 14:38:45 +02:00
web.scm
gnu: nghttp2: Replace with 1.57.0.
2023-10-30 00:29:53 +01:00
webkit.scm
gnu: wpewebkit: Update to 2.40.5.
2023-10-14 21:27:02 +03:00
wget.scm
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wine.scm
gnu: wine-minimal: Update to 8.18.
2023-11-03 09:56:01 +00:00
wireservice.scm
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wm.scm
gnu: wlr-randr: Update to 0.3.1.
2023-11-03 09:46:02 +00:00
wordnet.scm
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wv.scm
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wxwidgets.scm
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xdisorg.scm
gnu: mtdev: Fix cross-compiling to aarch64-linux.
2023-10-21 20:24:03 +03:00
xfce.scm
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xfig.scm
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xiph.scm
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xml.scm
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xnee.scm
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xorg.scm
gnu: xcb-util-errors: Fix cross-compiling.
2023-10-15 13:12:16 +03:00
zig-xyz.scm
gnu: Add river.
2023-10-21 00:27:25 +02:00
zig.scm
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zile.scm
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zwave.scm
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