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111705 Commits

Author SHA1 Message Date
Navid Afkhami
ffa3355458
gnu: Add r-correlation. 
* gnu/packages/cran.scm (r-correlation): New variable.
 2023-08-28 10:39:00 +02:00
Navid Afkhami
47f69a881a
gnu: Add r-statsexpressions. 
* gnu/packages/cran.scm (r-statsexpressions): New variable.
 2023-08-28 10:38:07 +02:00
Navid Afkhami
9892efde37
gnu: Add r-wrs2. 
* gnu/packages/cran.scm (r-wrs2): New variable.
 2023-08-28 10:38:07 +02:00
Navid Afkhami
458832c16e
gnu: Add r-mc2d. 
* gnu/packages/cran.scm (r-mc2d): New variable.
 2023-08-28 10:38:07 +02:00
Ricardo Wurmus
3b92730212
gnu: r-oompadata: Update home page to HTTPS. 
* gnu/packages/cran.scm (r-oompadata)[home-page]: Use HTTPS.
 2023-08-28 10:29:43 +02:00
Navid Afkhami
32cdced051
gnu: Add r-oompabase. 
* gnu/packages/cran.scm (r-oompabase): New variable.

Signed-off-by: Ricardo Wurmus <rekado@elephly.net>
 2023-08-28 10:29:26 +02:00
Navid Afkhami
48d90820e4
gnu: Add r-oompadata. 
* gnu/packages/cran.scm (r-oompadata): New variable.

Signed-off-by: Ricardo Wurmus <rekado@elephly.net>
 2023-08-28 10:25:50 +02:00
Navid Afkhami
cf941786ee
gnu: Add r-mousegastrulationdata. 
* gnu/packages/bioconductor.scm (r-mousegastrulationdata): New variable.

Signed-off-by: Ricardo Wurmus <rekado@elephly.net>
 2023-08-28 10:19:53 +02:00
Navid Afkhami
aa47077a8b
gnu: Add r-bumpymatrix. 
* gnu/packages/bioconductor.scm (r-bumpymatrix): New variable.

Signed-off-by: Ricardo Wurmus <rekado@elephly.net>
 2023-08-28 10:17:27 +02:00
Navid Afkhami
0b0e050415
gnu: Add r-msigdb. 
* gnu/packages/bioconductor.scm (r-msigdb): New variable.

Signed-off-by: Ricardo Wurmus <rekado@elephly.net>
 2023-08-28 10:06:37 +02:00
Navid Afkhami
aaf261cc8c
gnu: Add r-earlywarnings. 
* gnu/packages/cran.scm (r-earlywarnings): New variable.

Signed-off-by: Ricardo Wurmus <rekado@elephly.net>
 2023-08-28 10:01:17 +02:00
Navid Afkhami
432cf5b449
gnu: Add r-tgp. 
* gnu/packages/cran.scm (r-tgp): New variable.

Signed-off-by: Ricardo Wurmus <rekado@elephly.net>
 2023-08-28 09:58:06 +02:00
Navid Afkhami
2dc030f38f
gnu: Add r-maptree. 
* gnu/packages/cran.scm (r-maptree): New variable.

Signed-off-by: Ricardo Wurmus <rekado@elephly.net>
 2023-08-28 09:54:46 +02:00
Navid Afkhami
dd14ee0676
gnu: Add python-scdamandtools. 
* gnu/packages/bioinformatics.scm (python-scdamandtools): New variable.

Signed-off-by: Ricardo Wurmus <rekado@elephly.net>
 2023-08-28 09:50:08 +02:00
Leo Famulari
0aa74bebe3
gnu: linux-libre 6.1: Update to 6.1.47. 
* gnu/packages/linux.scm (linux-libre-6.1-version): Update to 6.1.47.
(linux-libre-6.1-pristine-source): Update hash.
 2023-07-23 22:26:00 -04:00
Leo Famulari
96d89018a0
gnu: linux-libre: Update to 6.4.12. 
* gnu/packages/linux.scm (linux-libre-6.4-version): Update to 6.4.12.
(linux-libre-6.4-pristine-source): Update hash.
 2023-07-23 22:26:00 -04:00
Tobias Geerinckx-Rice
5a2c3352d8
Revert "gnu: system: Add home-directory-permissions field to <user-account>." 
This reverts commit e9a5eebc78, which
as far as I can tell breaks system roll-backs thusly:

[...]
In gnu/build/accounts.scm:
   239:27  3 (_ #<<password-entry> name: "root" password: "x" uid: 0 gid: 0 real-name: "System >)
In unknown file:
           2 (string-join ("root" "x" "0" "0" "System administrator" "/root" #t) ":" #<undefined>)
In ice-9/boot-9.scm:
  1685:16  1 (raise-exception _ #:continuable? _)
  1685:16  0 (raise-exception _ #:continuable? _)

ice-9/boot-9.scm:1685:16: In procedure raise-exception:
In procedure string-append: Wrong type (expecting string): #t
 2023-08-20 02:00:00 +02:00
Greg Hogan
37cca1d87e
gnu: vbz-compression: Update to 1.0.3. 
* gnu/packages/bioinformatics.scm (vbz-compression): Update to 1.0.3.

Signed-off-by: Christopher Baines <mail@cbaines.net>
 2023-08-27 19:16:45 +01:00
Greg Hogan
1ae56be99e
gnu: spdlog: Fix tests. 
* gnu/packages/patches/spdlog-fix-tests.patch: New file.
* gnu/local.mk: Add it.
* gnu/packages/logging.scm (spdlog)[source]: Use patch.

Signed-off-by: Christopher Baines <mail@cbaines.net>
 2023-08-27 19:16:45 +01:00
Greg Hogan
68b3d71806
gnu: catch2: Update to 3.4.0. 
* gnu/packages/check.scm (catch2): Update to 3.4.0.

Signed-off-by: Christopher Baines <mail@cbaines.net>
 2023-08-27 19:16:44 +01:00
Cayetano Santos
e7c7efc296
gnu: emacs-corfu-doc-terminal: Update to 0.9. 
* gnu/packages/emacs-xyz.scm (emacs-corfu-doc-terminal): Update to 0.9.

Signed-off-by: Christopher Baines <mail@cbaines.net>
 2023-08-27 19:11:30 +01:00
Cayetano Santos
35421248b1
gnu: emacs-gptel: Update to 0.4.0. 
* gnu/packages/emacs-xyz.scm (emacs-gptel): Update to 0.4.0.

Signed-off-by: Christopher Baines <mail@cbaines.net>
 2023-08-27 19:11:07 +01:00
Greg Hogan
6482f61a0c
gnu: python-graph-tool: Update to 2.57. 
* gnu/packages/graph.scm (python-graph-tool): Update to 2.57.
[propagated-inputs]: Add python-zstandard.

Signed-off-by: Christopher Baines <mail@cbaines.net>
 2023-08-27 19:10:23 +01:00
Andy Tai
be2786144c
gnu: gemmlowp: Update to 0.1-1.08e4bb3. 
* gnu/packages/machine-learning.scm (gemmlowp): Update to 0.1-1.08e4bb3.

Signed-off-by: Christopher Baines <mail@cbaines.net>
 2023-08-27 19:05:57 +01:00
Hilton Chain
5856e185a3
gnu: Add tree-sitter-cmake. 
* gnu/packages/tree-sitter.scm (tree-sitter-cmake): New variable.
 2023-08-27 12:11:04 +08:00
Hilton Chain
493e9c2f54
gnu: phantomsocks: Update to 0.0.0-20230811053544-53b995bdab83. 
* gnu/packages/networking.scm (phantomsocks): Update to
0.0.0-20230811053544-53b995bdab83.
[propagated-inputs]: Move go-github-com-google-gopacket and
go-github-com-macronut-go-tproxy to...
[inputs]: ...here.
 2023-08-27 12:08:00 +08:00
Hilton Chain
0ba7debb02
gnu: picard: Update to 2.9.1. 
* gnu/packages/music.scm (picard): Update to 2.9.1.
[uri]: Switch mirror.
[#:phases]: Add phase 'set-HOME.
Remove phase 'delete-failing-test.
 2023-08-27 12:05:16 +08:00
Piotr Kwiecinski
e9bea73e2d
gnu: emacs-orderless: Update to 1.0. 
* gnu/packages/emacs-xyz.scm (emacs-orderless): Update to 1.0, previously used
commit was pointing to 0.8.

Signed-off-by: Hilton Chain <hako@ultrarare.space>
 2023-08-27 11:41:11 +08:00
Fabio Natali
262efbf9b1
gnu: emacs-hide-mode-line: Update to 1.0.3. 
* gnu/packages/emacs-xyz.scm (emacs-hide-mode-line): Update to 1.0.3.

Signed-off-by: Hilton Chain <hako@ultrarare.space>
 2023-08-27 11:39:53 +08:00
Cayetano Santos
5476f79e41
gnu: emacs-helpful: Update to 0.21. 
* gnu/packages/emacs-xyz.scm (emacs-helpful): Update to 0.21.

Signed-off-by: Hilton Chain <hako@ultrarare.space>
 2023-08-27 11:33:58 +08:00
Lu Hui
28fdf6cc16
gnu: libsigrokdecode: Update to 0.5.3-0.e6962b3, fix build. 
* gnu/packages/electronics.scm (libsigrokdecode): Update to 0.5.3-0.e6962b3.
[source]: Use git-fetch.  Remove patches.
[native-inputs]: Add libtool.
[arguments]<#:phases>: Remove bootstrap phase.
* gnu/packages/patches/libsigrokdecode-python3.9-fix.patch: Delete file.
* gnu/local.mk (dist_patch_DATA): Unregister it.

Signed-off-by: 宋文武 <iyzsong@member.fsf.org>
 2023-08-27 10:19:34 +08:00
fanquake
cfe55b220a
gnu: libmtp: Update to 1.1.21. 
* gnu/packages/libusb.scm (libmtp): Update to 1.1.21.

Signed-off-by: Christopher Baines <mail@cbaines.net>
 2023-08-26 12:44:03 +01:00
flabbergasted
bdea9adc86
gnu: neomutt: Update to 20230517. 
* gnu/packages/mail.scm (neomutt): Update to 20230517.

Signed-off-by: Christopher Baines <mail@cbaines.net>
 2023-08-26 12:36:28 +01:00
Christopher Baines
5ac265c9f0
gnu: guix-build-coordinator: Update to 0-87.06a4469. 
* gnu/packages/package-management.scm (guix-build-coordinator): Update to
0-87.06a4469.
 2023-08-26 12:21:41 +01:00
Christopher Baines
d823ed25d5
services: nar-herder: Specify a working directory. 
Mostly so that core dumps end up here.

* gnu/services/guix.scm (nar-herder-shepherd-services): Specify a working
directory.
 2023-08-26 12:19:14 +01:00
Christopher Baines
82b5e89d78
services: guix-data-service: Specify a working directory. 
Mostly so that core dumps end up here.

* gnu/services/guix.scm (guix-data-service-shepherd-services): Specify a
working directory.
 2023-08-26 12:18:52 +01:00
Christopher Baines
aba7c73d04
services: guix-build-coordinator: Specify a working directory. 
Mostly so that core dumps end up here.

* gnu/services/guix.scm (guix-build-coordinator-shepherd-services): Specify a
working directory.
 2023-08-26 12:18:08 +01:00
Zheng Junjie
eeb71d778f
gnu: pkgconf: Update to 2.0.2. 
* gnu/packages/pkg-config.scm (pkgconf): Update to 2.0.2.

Signed-off-by: 宋文武 <iyzsong@member.fsf.org>
 2023-08-26 11:30:27 +08:00
kiasoc5
98f9a35f53
gnu: xsecurelock: Update to 1.8.0. 
* gnu/packages/xdisorg.scm (xsecurelock): Update to 1.8.0.

Signed-off-by: 宋文武 <iyzsong@member.fsf.org>
 2023-08-26 11:30:27 +08:00
kiasoc5
428327e6be
gnu: ydotool: Update to 1.0.4. 
* gnu/packages/xdisorg.scm (ydotool): Update to 1.0.4.

Signed-off-by: 宋文武 <iyzsong@member.fsf.org>
 2023-08-26 11:30:27 +08:00
kiasoc5
92f301ffd8
gnu: xlockmore: Update to 5.72. 
* gnu/packages/xdisorg.scm (xlockmore): Update to 5.72.

Signed-off-by: 宋文武 <iyzsong@member.fsf.org>
 2023-08-26 11:30:16 +08:00
kiasoc5
9f1a39ac3d
gnu: autorandr: Update to 1.14. 
* gnu/packages/xdisorg.scm (autorandr): Update to 1.14.

Signed-off-by: 宋文武 <iyzsong@member.fsf.org>
 2023-08-26 11:22:33 +08:00
Bruno Victal
c135d9747e
gnu: mympd: Update to 11.0.4. 
* gnu/packages/mpd.scm (mympd): Update to 11.0.4.

Signed-off-by: 宋文武 <iyzsong@member.fsf.org>
 2023-08-26 11:16:57 +08:00
宋文武
10d4923691
gnu: rizin: Update to 0.6.1. 
* gnu/packages/engineering.scm (rizin): Update to 0.6.1.
[arguments]<#:phases>: Enable a now passing test (analysis_var).
 2023-08-26 11:15:29 +08:00
宋文武
b29aadf602
gnu: freedroidrpg: Update to 1.0. 
* gnu/packages/games.scm (freedroidrpg): Update to 1.0.
 2023-08-26 11:15:10 +08:00
宋文武
4595dfe2cd
gnu: gnubg: Update to 1.07.001. 
* gnu/packages/games.scm (gnubg): Update to 1.07.001.
 2023-08-26 11:14:47 +08:00
Jussi Timperi
c08b6d7056
gnu: tp-smapi-module: Update to 0.44. 
* gnu/packages/linux.scm (tp-smapi-module): Update to 0.44.

Signed-off-by: 宋文武 <iyzsong@member.fsf.org>
 2023-08-26 11:14:36 +08:00
John Kehayias
d17eea7472
gnu: python-canvasapi: Propagate python-arrow. 
The package python-arrow is needed when importing canvasapi.

* gnu/packages/python-web.scm (python-canvasapi)[native-inputs]: Move
python-arrow from here...
[propagated-inputs]: ...to here.
 2023-08-25 18:30:19 -04:00
John Kehayias
375a1a0558
gnu: python-canvasapi: Update to 3.2.0. 
* gnu/packages/python-web.scm (python-canvasapi): Update to 3.2.0.
[build-system]: Switch to pyproject-build-system.
[native-inputs]: Add python-arrow.
 2023-08-25 12:53:23 -04:00
David Thompson
e9a5eebc78
gnu: system: Add home-directory-permissions field to <user-account>. 
* gnu/system/accounts.scm (<user-account>)[home-directory-permissions]: New
field.
(user-account-home-directory-permissions): New accessor.
* gnu/build/activation.scm (activate-users+groups): Use home directory
permission bits from the user account object.
* doc/guix.texi (User Accounts): Document new field.

Signed-off-by: Josselin Poiret <dev@jpoiret.xyz>
 2023-08-25 15:12:54 +02:00