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91546 Commits

Author SHA1 Message Date
Guillaume Le Vaillant
753a88c980
gnu: electron-cash: Update to 4.2.12. 
* gnu/packages/finance.scm (electron-cash): Update to 4.2.12.
 2022-11-25 09:58:51 +01:00
Guillaume Le Vaillant
4777c104be
gnu: xmrig: Update to 6.18.1. 
* gnu/packages/finance.scm (xmrig): Update to 6.18.1.
 2022-11-25 09:54:08 +01:00
Guillaume Le Vaillant
77fe40060d
gnu: p2pool: Update to 2.5. 
* gnu/packages/finance.scm (p2pool): Update to 2.5.
 2022-11-25 09:51:46 +01:00
Nicolas Goaziou
5eb2995c00
gnu: emacs-popon: Update to 0.12. 
* gnu/packages/emacs-xyz.scm (emacs-popon): Update to 0.12.
 2022-11-24 23:47:32 +01:00
Nicolas Goaziou
94907932b8
gnu: emacs-flymake-mypy: Update to 0.3.0. 
* gnu/packages/emacs-xyz.scm (emacs-flymake-mypy): Update to 0.3.0.
 2022-11-24 23:45:05 +01:00
Nicolas Goaziou
d858714ffc
gnu: burgerspace: Update to 1.9.5. 
* gnu/packages/games.scm (burgerspace): Update to 1.9.5.
 2022-11-24 23:36:03 +01:00
Nicolas Goaziou
fa5701964d
gnu: emacs-inspector: Activate tests. 
* gnu/packages/emacs-xyz.scm (emacs-inspector)[arguments]: Add tests.  Skip
failing test.  Fix compatibility with Emacs 28 and older.
 2022-11-24 23:30:57 +01:00
Nicolas Goaziou
84136e95b2
gnu: emacs-inspector: Fix base version. 
* gnu/packages/emacs-xyz.scm (emacs-inspector)[version]: Use "0.8" as base
version, which is the version from "inspector.el" instead of
"tree-inspector.el".
 2022-11-24 23:30:56 +01:00
Maxim Cournoyer
82c43b276d
gnu: linux-libre: Enable building info doc. 
* gnu/packages/patches/linux-libre-infodocs-target.patch: New file.
* gnu/local.mk (dist_patch_DATA): Register it.
* gnu/packages/linux.scm (linux-libre-6.0-source, linux-libre-5.15-source)
(linux-libre-5.10-source): Apply above patch.
(doc-supported?): New procedure.
(make-linux-libre) [DOC-SUPPORTED?]: Add new patch in
the default patches used.  Add a BUILD-DOC? argument.
(make-linux-libre*): Add a BUILD-DOC? argument.  Validate BUILD-DOC? for
supported VERSION.
[arguments]: Conditionally add the build-doc and install-doc phases.
[native-inputs]: Conditionally add fontconfig, graphviz, python-wrapper,
python-sphinx, texinfo and which.
 2022-11-24 16:35:11 -05:00
Ricardo Wurmus
5f8c11d48e
gnu: emacs-s: Do not use full-fledged Emacs to run tests. 
* gnu/packages/emacs-xyz.scm (emacs-s)[arguments]: Use emacs-minimal.
 2022-11-24 22:32:53 +01:00
Efraim Flashner
b3beeaa309
gnu: arm-trusted-firmware: Remove blobs in a snippet. 
* gnu/packages/firmware.scm (make-arm-trusted-firmware)[source]: Add
snippet to remove binary blobs.
[arguments]: Remove related phase.
 2022-11-24 22:22:39 +02:00
Efraim Flashner
255450bed2
gnu: arm-trusted-firmware: Update to 2.8. 
* gnu/packages/firmware.scm (make-arm-trusted-firmware): Update to 2.8.
[arguments]: Remove trailing #t from phases. Clean up regexes.
 2022-11-24 22:22:38 +02:00
Efraim Flashner
564dcaa1fa
gnu: python-brotlicffi: Unbundle brotli. 
* gnu/packages/python-compression.scm (python-brotlicffi)[source]: Add
snippet to delete bundled libbrotli.
[arguments]: Add phase to configure using shared libbrotli.
[inputs]: Add brotli.
 2022-11-24 22:22:32 +02:00
Maxim Cournoyer
4c9e94a453
gnu: Add qt-creator. 
* gnu/packages/qt.scm (qt-creator): New variable.

wip
 2022-11-24 14:55:57 -05:00
Maxim Cournoyer
085831010c
gnu: qttools: Add clang-15 as input. 
* gnu/packages/qt.scm (qttools) [inputs]: Add clang-15, so that the qdoc
command can be built.
[phases] {sanity-check}: New phase, to guard against a problem that proved
difficult to isolate.
 2022-11-24 14:55:57 -05:00
Maxim Cournoyer
d1dc2c47fe
gnu: Add clazy. 
* gnu/packages/qt.scm (clazy): New variable.
 2022-11-24 14:55:57 -05:00
Maxim Cournoyer
9381e14536
gnu: Add qttranslations. 
* gnu/packages/qt.scm (qttranslations): New variable.
 2022-11-24 14:52:56 -05:00
Nicolas Goaziou
8f3e10ae81
gnu: emacs-projectile: Activate tests. 
* gnu/packages/emacs-xyz.scm (emacs-projectile)[source]: Use Git repository
instead of released tarball to get the test file.
[arguments]: Activate tests, and fix a failing one.
 2022-11-24 18:06:33 +01:00
Nicolas Goaziou
b438e1f231
gnu: emacs-projectile: Improve description. 
* gnu/packages/emacs-xyz.scm (emacs-projectile)[description]: Use proper
capitalization, expand some words, add Texinfo markup, remove fancy typography.
 2022-11-24 18:05:41 +01:00
Nicolas Goaziou
826d862eb3
gnu: emacs-projectile: Update to 2.7.0. 
* gnu/packages/emacs-xyz.scm (emacs-projectile): Update to 2.7.0.
 2022-11-24 18:05:41 +01:00
Nicolas Goaziou
071d0cac80
gnu: emacs-kind-icon: Update to 0.1.8. 
* gnu/packages/emacs-xyz.scm (emacs-kind-icon): Update to 0.1.8.
 2022-11-24 18:05:40 +01:00
Nicolas Goaziou
95aa64e9fe
gnu: emacs-vertico: Update to 0.29. 
* gnu/packages/emacs-xyz.scm (emacs-vertico): Update to 0.29.
 2022-11-24 18:05:40 +01:00
Nicolas Goaziou
49cfa7d8bd
gnu: emacs-eldev: Update to 1.3. 
* gnu/packages/emacs-xyz.scm (emacs-eldev): Update to 1.3.
 2022-11-24 18:05:40 +01:00
Nicolas Goaziou
b8eb99f817
gnu: emacs-detached: Update to 0.10.0. 
* gnu/packages/emacs-xyz.scm (emacs-detached): Update to 0.10.0.
 2022-11-24 18:05:39 +01:00
Nicolas Goaziou
3174c4c17d
gnu: emacs-org-modern: Update to 0.6. 
* gnu/packages/emacs-xyz.scm (emacs-org-modern): Update to 0.6.
 2022-11-24 18:05:39 +01:00
Ricardo Wurmus
c29d999a34
gnu: r-ancombc: Update to 2.0.1. 
* gnu/packages/bioconductor.scm (r-ancombc): Update to 2.0.1.
[propagated-inputs]: Remove r-microbiome, r-nlme, and r-phyloseq; add r-cvxr, r-emmeans,
r-lme4, r-lmertest, r-mia, r-rngtools, r-s4vectors,
r-singlecellexperiment, r-summarizedexperiment, and
r-treesummarizedexperiment.
 2022-11-24 18:02:15 +01:00
Ricardo Wurmus
139da51753
gnu: Add r-mia. 
* gnu/packages/bioconductor.scm (r-mia): New variable.
 2022-11-24 18:02:15 +01:00
Ricardo Wurmus
90d8ac279f
gnu: Add r-treesummarizedexperiment. 
* gnu/packages/bioconductor.scm (r-treesummarizedexperiment): New variable.
 2022-11-24 18:02:15 +01:00
Ricardo Wurmus
efb965a4fa
gnu: Add r-cvxr. 
* gnu/packages/cran.scm (r-cvxr): New variable.
 2022-11-24 18:02:15 +01:00
Ricardo Wurmus
bde758150f
gnu: Add r-ecosolver. 
* gnu/packages/cran.scm (r-ecosolver): New variable.
 2022-11-24 18:02:15 +01:00
Ricardo Wurmus
697a0f8ca4
gnu: Add r-scs. 
* gnu/packages/cran.scm (r-scs): New variable.
 2022-11-24 18:02:15 +01:00
Ricardo Wurmus
8b1bee45f7
gnu: Add r-osqp. 
* gnu/packages/cran.scm (r-osqp): New variable.
 2022-11-24 18:02:15 +01:00
Mădălin Ionel Patrașcu
8d3bd8e4b0
gnu: Add r-ancombc. 
* gnu/packages/bioconductor.scm (r-ancombc): New variable.
 2022-11-24 18:02:15 +01:00
Leo Famulari
a8c36bf8c4
gnu: linux-libre 4.19: Update to 4.19.266. 
* gnu/packages/linux.scm (linux-libre-4.19-version): Update to 4.19.266.
(linux-libre-4.19-pristine-source): Update hash.
 2022-11-24 11:25:51 -05:00
Ricardo Wurmus
fa59a22140
gnu: r-aims: Update to 1.30.0. 
* gnu/packages/bioconductor.scm (r-aims): Update to 1.30.0.
 2022-11-24 15:36:18 +01:00
Mădălin Ionel Patrașcu
2e85d26ebb
gnu: Add r-aims. 
* gnu/packages/bioconductor.scm (r-aims): New variable.
 2022-11-24 15:35:38 +01:00
Ricardo Wurmus
6f39e16124
gnu: r-alevinqc: Update to 1.14.0. 
* gnu/packages/bioconductor.scm (r-alevinqc): Update to 1.14.0.
 2022-11-24 15:28:15 +01:00
Mădălin Ionel Patrașcu
5dc82a7f8b
gnu: Add r-alevinqc. 
* gnu/packages/bioconductor.scm (r-alevinqc): New variable.
 2022-11-24 15:22:28 +01:00
Ricardo Wurmus
610616d448
gnu: r-alphabeta: Update to 1.12.0. 
* gnu/packages/bioconductor.scm (r-alphabeta): Update to 1.12.0.
 2022-11-24 15:13:50 +01:00
Mădălin Ionel Patrașcu
6c7f0849c1
gnu: Add r-alphabeta. 
* gnu/packages/bioconductor.scm (r-alphabeta): New variable.
 2022-11-24 15:09:13 +01:00
Ricardo Wurmus
c706a0a2af
gnu: r-asafe: Update to 1.24.0. 
* gnu/packages/bioconductor.scm (r-asafe): Update to 1.24.0.
 2022-11-24 15:02:41 +01:00
Mădălin Ionel Patrașcu
01124e5a10
gnu: Add r-asafe. 
* gnu/packages/bioconductor.scm (r-asafe): New variable.
 2022-11-24 15:02:10 +01:00
Ricardo Wurmus
c2cba91ac9
gnu: r-arrayexpress: Update to 1.57.0. 
* gnu/packages/bioconductor.scm (r-arrayexpress): Update to 1.57.0.
 2022-11-24 14:54:41 +01:00
Mădălin Ionel Patrașcu
13e8930efb
gnu: Add r-arrayexpress. 
* gnu/packages/bioconductor.scm (r-arrayexpress): New variable.
 2022-11-24 14:53:09 +01:00
Ricardo Wurmus
f43a41d196
gnu: r-scuttle: Update to 1.8.1. 
* gnu/packages/bioconductor.scm (r-scuttle): Update to 1.8.1.
 2022-11-24 12:32:11 +01:00
Ricardo Wurmus
a2ad5b53bf
gnu: r-rgreat: Update to 2.0.2. 
* gnu/packages/bioconductor.scm (r-rgreat): Update to 2.0.2.
 2022-11-24 12:32:11 +01:00
Ricardo Wurmus
8bfac375aa
gnu: r-bioccheck: Update to 1.34.2. 
* gnu/packages/bioconductor.scm (r-bioccheck): Update to 1.34.2.
 2022-11-24 12:32:11 +01:00
Ricardo Wurmus
f9747ecc2c
gnu: r-dose: Update to 3.24.2. 
* gnu/packages/bioconductor.scm (r-dose): Update to 3.24.2.
 2022-11-24 12:32:10 +01:00
Ricardo Wurmus
a5ee462b7a
gnu: r-shortread: Update to 1.56.1. 
* gnu/packages/bioconductor.scm (r-shortread): Update to 1.56.1.
 2022-11-24 12:32:10 +01:00
Ricardo Wurmus
3bc54ddeab
gnu: r-chipseeker: Update to 1.34.1. 
* gnu/packages/bioconductor.scm (r-chipseeker): Update to 1.34.1.
 2022-11-24 12:32:10 +01:00
Ricardo Wurmus
d3696e71a9
gnu: r-deconvr: Update to 1.4.2. 
* gnu/packages/bioconductor.scm (r-deconvr): Update to 1.4.2.
 2022-11-24 12:32:10 +01:00
Ricardo Wurmus
04340b27ba
gnu: r-bambu: Update to 3.0.2. 
* gnu/packages/bioconductor.scm (r-bambu): Update to 3.0.2.
 2022-11-24 12:32:10 +01:00
Ricardo Wurmus
4c0449ba8f
gnu: r-minimal: Simplify build phase. 
* gnu/packages/statistics.scm (r-minimal)[arguments]: Simplify phase
"remove-extraneous-references".
 2022-11-24 12:32:10 +01:00
Ricardo Wurmus
a8082fefe0
gnu: r-minimal: Use %store-directory instead of /gnu/store. 
* gnu/packages/statistics.scm (r-minimal)[arguments]: Use %store-directory
instead of hard-coding "/gnu/store" prefix.
 2022-11-24 12:32:10 +01:00
Ricardo Wurmus
eeeca2341d
gnu: r-with-tests: Update to 4.2.2. 
* gnu/packages/statistics.scm (r-with-tests): Update to 4.2.2.
[arguments]: Patch DESCRIPTION file of "tools" package to avoid
non-deterministic line break.
 2022-11-24 12:32:09 +01:00
Ricardo Wurmus
ffe149ccc5
gnu: r-with-tests: Drop labels from input lists. 
* gnu/packages/statistics.scm (r-with-tests)[native-inputs]: Drop input
labels.
[inputs]: Same.
(r-minimal)[arguments]: Remove lookup of "texlive" package.
 2022-11-24 12:32:09 +01:00
Ricardo Wurmus
f3004710fa
gnu: r-ggtern: Update to 3.4.0. 
* gnu/packages/cran.scm (r-ggtern): Update to 3.4.0.
 2022-11-24 12:32:09 +01:00
zimoun
54afdb3de1
gnu: r-phyloseq: Update to 1.42.0. 
* gnu/packages/bioconductor.scm (r-phyloseq): Update to 1.42.0.
 2022-11-24 12:32:09 +01:00
zimoun
9988c60ea3
gnu: r-tximeta: Update to 1.16.0. 
* gnu/packages/bioconductor.scm (r-tximeta): Update to 1.16.0.
 2022-11-24 12:32:09 +01:00
zimoun
5140be4c81
gnu: r-tricycle: Update to 1.6.0. 
* gnu/packages/bioconductor.scm (r-tricycle): Update to 1.6.0.
 2022-11-24 12:32:09 +01:00
zimoun
7a33311bfd
gnu: r-tcgabiolinks: Update to 2.25.3. 
* gnu/packages/bioconductor.scm (r-tcgabiolinks): Update to 2.25.3.
 2022-11-24 12:32:09 +01:00
zimoun
dde0da5a95
gnu: r-biscuiteer: Update to 1.12.0. 
* gnu/packages/bioconductor.scm (r-biscuiteer): Update to 1.12.0.
 2022-11-24 12:32:09 +01:00
zimoun
926fe78f73
gnu: r-omnipathr: Update to 3.5.25. 
* gnu/packages/bioconductor.scm (r-omnipathr): Update to 3.5.25.
[propagated-inputs]: Add r-rmarkdown and r-rvest.
 2022-11-24 12:32:08 +01:00
zimoun
3f58454739
gnu: r-omicade4: Update to 1.38.0. 
* gnu/packages/bioconductor.scm (r-omicade4): Update to 1.38.0.
 2022-11-24 12:32:08 +01:00
zimoun
e524c12e06
gnu: r-dmrseq: Update to 1.18.0. 
* gnu/packages/bioconductor.scm (r-dmrseq): Update to 1.18.0.
 2022-11-24 12:32:08 +01:00
zimoun
95792cda89
gnu: r-dada2: Update to 1.26.0. 
* gnu/packages/bioconductor.scm (r-dada2): Update to 1.26.0.
 2022-11-24 12:32:08 +01:00
zimoun
c2c91d9dfe
gnu: r-bsseq: Update to 1.34.0. 
* gnu/packages/bioconductor.scm (r-bsseq): Update to 1.34.0.
 2022-11-24 12:32:08 +01:00
zimoun
3b8df103f7
gnu: r-biotmle: Update to 1.22.0. 
* gnu/packages/bioconductor.scm (r-biotmle): Update to 1.22.0.
 2022-11-24 12:32:08 +01:00
zimoun
3ed0a63106
gnu: r-biotip: Update to 1.12.0. 
* gnu/packages/bioconductor.scm (r-biotip): Update to 1.12.0.
 2022-11-24 12:32:08 +01:00
zimoun
f230df5f4f
gnu: r-bioqc: Update to 1.26.0. 
* gnu/packages/bioconductor.scm (r-bioqc): Update to 1.26.0.
 2022-11-24 12:32:07 +01:00
zimoun
219b98fee9
gnu: r-bionetstat: Update to 1.18.0. 
* gnu/packages/bioconductor.scm (r-bionetstat): Update to 1.18.0.
 2022-11-24 12:32:07 +01:00
zimoun
01fb7c35e7
gnu: r-bionet: Update to 1.58.0. 
* gnu/packages/bioconductor.scm (r-bionet): Update to 1.58.0.
 2022-11-24 12:32:07 +01:00
zimoun
1118d6e856
gnu: r-bionero: Update to 1.6.0. 
* gnu/packages/bioconductor.scm (r-bionero): Update to 1.6.0.
 2022-11-24 12:32:07 +01:00
zimoun
858d9ccd9b
gnu: r-biomvrcns: Update to 1.38.0. 
* gnu/packages/bioconductor.scm (r-biomvrcns): Update to 1.38.0.
 2022-11-24 12:32:07 +01:00
zimoun
c0412736d8
gnu: r-biomvcclass: Update to 1.66.0. 
* gnu/packages/bioconductor.scm (r-biomvcclass): Update to 1.66.0.
 2022-11-24 12:32:07 +01:00
zimoun
3879ddbdb9
gnu: r-mvcclass: Update to 1.72.0. 
* gnu/packages/bioconductor.scm (r-mvcclass): Update to 1.72.0.
 2022-11-24 12:32:07 +01:00
zimoun
4875f37cb6
gnu: r-biomformat: Update to 1.26.0. 
* gnu/packages/bioconductor.scm (r-biomformat): Update to 1.26.0.
 2022-11-24 12:32:06 +01:00
zimoun
ffd5e53e87
gnu: r-biodb: Update to 1.6.0. 
* gnu/packages/bioconductor.scm (r-biodb): Update to 1.6.0.
 2022-11-24 12:32:06 +01:00
zimoun
efc663040b
gnu: r-biocdockermanager: Update to 1.10.0. 
* gnu/packages/bioconductor.scm (r-biocdockermanager): Update to 1.10.0.
 2022-11-24 12:32:06 +01:00
zimoun
4fcf1f08ec
gnu: r-biocthis: Update to 1.8.1. 
* gnu/packages/bioconductor.scm (r-biocthis): Update to 1.8.1.
 2022-11-24 12:32:06 +01:00
zimoun
3aea2c40d8
gnu: r-basilisk: Update to 1.10.2. 
* gnu/packages/bioconductor.scm (r-basilisk): Update to 1.10.2.
 2022-11-24 12:32:06 +01:00
zimoun
f5a514b605
gnu: r-basilisk-utils: Update to 1.10.0. 
* gnu/packages/bioconductor.scm (r-basilisk-utils): Update to 1.10.0.
 2022-11-24 12:32:06 +01:00
zimoun
925642f837
gnu: r-dir-expiry: Update to 1.6.0. 
* gnu/packages/bioconductor.scm (r-dir-expiry): Update to 1.6.0.
 2022-11-24 12:32:06 +01:00
zimoun
727cd07d1a
gnu: r-genetclassifier: Update to 1.38.0. 
* gnu/packages/bioconductor.scm (r-genetclassifier): Update to 1.38.0.
 2022-11-24 12:32:05 +01:00
zimoun
dbaad2365a
gnu: r-minet: Update to 3.56.0. 
* gnu/packages/bioconductor.scm (r-minet): Update to 3.56.0.
 2022-11-24 12:32:05 +01:00
zimoun
8ba466faff
gnu: r-biobtreer: Update to 1.10.0. 
* gnu/packages/bioconductor.scm (r-biobtreer): Update to 1.10.0.
 2022-11-24 12:32:05 +01:00
zimoun
009ac4e3a9
gnu: r-bgeedb: Update to 2.24.0. 
* gnu/packages/bioconductor.scm (r-bgeedb): Update to 2.24.0.
 2022-11-24 12:32:05 +01:00
zimoun
3912f43996
gnu: r-bgeecall: Update to 1.14.0. 
* gnu/packages/bioconductor.scm (r-bgeecall): Update to 1.14.0.
 2022-11-24 12:32:05 +01:00
zimoun
81cea8424d
gnu: r-beclear: Update to 2.14.0. 
* gnu/packages/bioconductor.scm (r-beclear): Update to 2.14.0.
[propagated-inputs]: Add r-ids.
 2022-11-24 12:32:05 +01:00
zimoun
5604f64c34
gnu: r-megadepth: Update to 1.8.0. 
* gnu/packages/bioconductor.scm (r-megadepth): Update to 1.8.0.
 2022-11-24 12:32:05 +01:00
zimoun
3823aa40a3
gnu: r-ballgown: Update to 2.30.0. 
* gnu/packages/bioconductor.scm (r-ballgown): Update to 2.30.0.
 2022-11-24 12:32:04 +01:00
zimoun
3ca58a4ff3
gnu: r-guitar: Update to 2.14.0. 
* gnu/packages/bioconductor.scm (r-guitar): Update to 2.14.0.
 2022-11-24 12:32:04 +01:00
zimoun
5950a171ba
gnu: r-chromstar: Update to 1.24.0. 
* gnu/packages/bioconductor.scm (r-chromstar): Update to 1.24.0.
 2022-11-24 12:32:04 +01:00
zimoun
1ff0bc4e7b
gnu: r-snpstats: Update to 1.48.0. 
* gnu/packages/bioconductor.scm (r-snpstats): Update to 1.48.0.
 2022-11-24 12:32:04 +01:00
zimoun
ddc7edf0b3
gnu: r-pathview: Update to 1.38.0. 
* gnu/packages/bioconductor.scm (r-pathview): Update to 1.38.0.
 2022-11-24 12:32:04 +01:00
zimoun
1315c532de
gnu: r-ldblock: Update to 1.28.0. 
* gnu/packages/bioconductor.scm (r-ldblock): Update to 1.28.0.
 2022-11-24 12:32:04 +01:00
zimoun
db290bf5b9
gnu: r-kegggraph: Update to 1.58.0. 
* gnu/packages/bioconductor.scm (r-kegggraph): Update to 1.58.0.
 2022-11-24 12:32:04 +01:00
zimoun
b6e56ceeb9
gnu: r-gwascat: Update to 2.30.0. 
* gnu/packages/bioconductor.scm (r-gwascat): Update to 2.30.0.
 2022-11-24 12:32:03 +01:00
zimoun
5f3ff4f884
gnu: r-gviz: Update to 1.42.0. 
* gnu/packages/bioconductor.scm (r-gviz): Update to 1.42.0.
 2022-11-24 12:32:03 +01:00
zimoun
34867ac9cf
gnu: r-ggbio: Update to 1.46.0. 
* gnu/packages/bioconductor.scm (r-ggbio): Update to 1.46.0.
 2022-11-24 12:32:03 +01:00