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105221 Commits

Author SHA1 Message Date
Greg Hogan
f7d5722d36
gnu: fish: Update to 3.6.1. 
* gnu/packages/shells.scm (fish): Update to 3.6.1.

Signed-off-by: Efraim Flashner <efraim@flashner.co.il>
 2023-06-01 12:18:31 +03:00
Greg Hogan
247ac4b73f
gnu: fio: Update to 3.35. 
* gnu/packages/benchmark.scm (fio): Update to 3.35.

Signed-off-by: Efraim Flashner <efraim@flashner.co.il>
 2023-06-01 12:15:01 +03:00
Greg Hogan
dc6afa69eb
gnu: atop: Update to 2.9.0. 
* gnu/packages/admin.scm (atop): Update to 2.9.0.

Signed-off-by: Efraim Flashner <efraim@flashner.co.il>
 2023-06-01 12:13:08 +03:00
Efraim Flashner
4abf0af4b1
gnu: openblas: Update make-flags comments and coding style. 
* gnu/packages/maths.scm (openblas)[arguments]: In the make-flags use
the target-* macros. Adjust the wording describing why the different
architectures have the flags they do.
 2023-06-01 11:14:03 +03:00
Efraim Flashner
076688fa1e
gnu: openblas: Update architectures we provide substitutes for. 
* gnu/packages/maths.scm (openblas)[arguments]: Adjust the substitutable?
flag to only not provide substitutes when building for powerpc-linux.
Adjust the comment accordingly.
 2023-06-01 11:14:03 +03:00
Efraim Flashner
872e1434f1
gnu: openblas-ilp64: Add powerpc64le-linux as a supported system. 
* gnu/packages/maths.scm (openblas-ilp64)[supported-systems]: Add
powerpc64le-linux.
 2023-06-01 11:14:03 +03:00
Ricardo Wurmus
93804e978f
gnu: r-mbecs: Fix indentation. 
* gnu/packages/bioconductor.scm (r-mbecs)[arguments]: Adjust indentation and
spelling of comment.
 2023-06-01 09:21:57 +02:00
Ricardo Wurmus
d019053aca
gnu: Add squashfuse. 
* gnu/packages/file-systems.scm (squashfuse): New variable.
 2023-06-01 09:15:26 +02:00
Mădălin Ionel Patrașcu
10d3f8aa7b
gnu: Add r-mbecs. 
* gnu/packages/bioconductor.scm (r-mbecs): New variable.
 2023-06-01 09:15:26 +02:00
Leo Famulari
13e2138c23
gnu: Remove linux-libre 6.2. 
This kernel series is no longer supported upstream.

* gnu/packages/linux.scm (linux-libre-6.2-version, linux-libre-6.2-gnu-revision,
deblob-scripts-6.2, linux-libre-6.2-pristine-source, linux-libre-6.2-source,
linux-libre-headers-6.2, linux-libre-6.2): Remove variables.
* gnu/packages/aux-files/linux-libre/6.2-arm.conf,
gnu/packages/aux-files/linux-libre/6.2-arm64.conf,
gnu/packages/aux-files/linux-libre/6.2-i686.conf,
gnu/packages/aux-files/linux-libre/6.2-x86_64.conf: Delete files.
* Makefile.am (AUX_FILES): Remove them.
 2023-05-31 21:21:25 -04:00
Leo Famulari
35bdf804cb
gnu: linux-libre 4.14: Update to 4.14.316. 
* gnu/packages/linux.scm (linux-libre-4.14-version): Update to 4.14.316.
(linux-libre-4.14-pristine-source): Update hash.
 2023-05-31 21:21:25 -04:00
Leo Famulari
c428ed520d
gnu: linux-libre 4.19: Update to 4.19.284. 
* gnu/packages/linux.scm (linux-libre-4.19-version): Update to 4.19.284.
(linux-libre-4.19-pristine-source): Update hash.
 2023-05-31 21:21:24 -04:00
Leo Famulari
1bd5d06736
gnu: linux-libre 5.4: Update to 5.4.244. 
* gnu/packages/linux.scm (linux-libre-5.4-version): Update to 5.4.244.
(linux-libre-5.4-pristine-source): Update hash.
 2023-05-31 21:21:24 -04:00
Leo Famulari
a939d7cfee
gnu: linux-libre 5.10: Update to 5.10.181. 
* gnu/packages/linux.scm (linux-libre-5.10-version): Update to 5.10.181.
(linux-libre-5.10-pristine-source): Update hash.
 2023-05-31 21:21:24 -04:00
Leo Famulari
9ab028e70e
gnu: linux-libre 5.15: Update to 5.15.114. 
* gnu/packages/linux.scm (linux-libre-5.15-version): Update to 5.15.114.
(linux-libre-5.15-pristine-source): Update hash.
 2023-05-31 21:21:23 -04:00
Leo Famulari
876486476a
gnu: linux-libre 6.1: Update to 6.1.31. 
* gnu/packages/linux.scm (linux-libre-6.1-version): Update to 6.1.31.
(linux-libre-6.1-pristine-source): Update hash.
 2023-05-31 21:21:23 -04:00
Leo Famulari
7576eff1bf
gnu: linux-libre: Update to 6.3.5. 
* gnu/packages/linux.scm (linux-libre-6.3-version): Update to 6.3.5.
(linux-libre-6.3-pristine-source): Update hash.
 2023-05-31 21:21:12 -04:00
Ludovic Courtès
9f7cd1fcaf
gnu: Add updater input properties for R and Python packages. 
* gnu/packages/cran.scm (r-glue, r-xfun, r-vctrs)
(r-lifecycle): Turn comment about r-knitr into 'properties' field.
* gnu/packages/mpi.scm (python-mpi4py)[properties]: New field.
 2023-05-31 23:26:12 +02:00
Ricardo Wurmus
6ea2e1105a
gnu: r-desctools: Update to 0.99.49. 
* gnu/packages/statistics.scm (r-desctools): Update to 0.99.49.
[propagated-inputs]: Add r-withr.
 2023-05-31 18:19:55 +02:00
Ricardo Wurmus
df71989159
gnu: r-rrcov: Update to 1.7-3. 
* gnu/packages/statistics.scm (r-rrcov): Update to 1.7-3.
 2023-05-31 18:19:55 +02:00
Ricardo Wurmus
e2bc0cb1b4
gnu: r-rcpparmadillo: Update to 0.12.4.0.0. 
* gnu/packages/statistics.scm (r-rcpparmadillo): Update to 0.12.4.0.0.
 2023-05-31 18:19:55 +02:00
Ricardo Wurmus
ecae6c08fb
gnu: r-knitr: Update to 1.43. 
* gnu/packages/statistics.scm (r-knitr): Update to 1.43.
 2023-05-31 18:19:55 +02:00
Ricardo Wurmus
ef8d938f7b
gnu: r-markdown: Update to 1.7. 
* gnu/packages/statistics.scm (r-markdown): Update to 1.7.
 2023-05-31 18:19:55 +02:00
Ricardo Wurmus
232b2530b8
gnu: r-matrix: Update to 1.5-4.1. 
* gnu/packages/statistics.scm (r-matrix): Update to 1.5-4.1.
 2023-05-31 18:19:55 +02:00
Ricardo Wurmus
1c2d80a2f9
gnu: r-cartogram: Update to 0.3.0. 
* gnu/packages/cran.scm (r-cartogram): Update to 0.3.0.
 2023-05-31 18:19:55 +02:00
Ricardo Wurmus
112afc5979
gnu: r-zoib: Update to 1.6. 
* gnu/packages/cran.scm (r-zoib): Update to 1.6.
 2023-05-31 18:19:55 +02:00
Ricardo Wurmus
a713d1b90e
gnu: r-crul: Update to 1.4.0. 
* gnu/packages/cran.scm (r-crul): Update to 1.4.0.
 2023-05-31 18:19:55 +02:00
Ricardo Wurmus
4560bd6f51
gnu: r-dismo: Update to 1.3-14. 
* gnu/packages/cran.scm (r-dismo): Update to 1.3-14.
 2023-05-31 18:19:55 +02:00
Ricardo Wurmus
131db17bd5
gnu: r-rgeos: Update to 0.6-3. 
* gnu/packages/cran.scm (r-rgeos): Update to 0.6-3.
 2023-05-31 18:19:55 +02:00
Ricardo Wurmus
0268d10d13
gnu: r-tzdb: Update to 0.4.0. 
* gnu/packages/cran.scm (r-tzdb): Update to 0.4.0.
 2023-05-31 18:19:55 +02:00
Ricardo Wurmus
44f3470a7d
gnu: r-lwgeom: Update to 0.2-13. 
* gnu/packages/cran.scm (r-lwgeom): Update to 0.2-13.
 2023-05-31 18:19:55 +02:00
Ricardo Wurmus
5be4640724
gnu: r-mlr3pipelines: Update to 0.5.0-1. 
* gnu/packages/cran.scm (r-mlr3pipelines): Update to 0.5.0-1.
[native-inputs]: Add r-knitr.
 2023-05-31 18:19:55 +02:00
Ricardo Wurmus
12adca4654
gnu: r-mlr3misc: Update to 0.12.0. 
* gnu/packages/cran.scm (r-mlr3misc): Update to 0.12.0.
 2023-05-31 18:19:55 +02:00
Ricardo Wurmus
75076e408f
gnu: r-scattermore: Update to 1.1. 
* gnu/packages/cran.scm (r-scattermore): Update to 1.1.
 2023-05-31 18:19:55 +02:00
Ricardo Wurmus
d186488fdd
gnu: r-igraph: Update to 1.4.3. 
* gnu/packages/cran.scm (r-igraph): Update to 1.4.3.
 2023-05-31 18:19:55 +02:00
Ricardo Wurmus
49e7043b39
gnu: r-confintr: Update to 1.0.1. 
* gnu/packages/cran.scm (r-confintr): Update to 1.0.1.
 2023-05-31 18:19:55 +02:00
Ricardo Wurmus
73699a2eb5
gnu: r-spatstat: Update to 3.0-6. 
* gnu/packages/cran.scm (r-spatstat): Update to 3.0-6.
 2023-05-31 18:19:55 +02:00
Ricardo Wurmus
33f60fa7b4
gnu: r-spatstat-random: Update to 3.1-5. 
* gnu/packages/cran.scm (r-spatstat-random): Update to 3.1-5.
 2023-05-31 18:19:55 +02:00
Ricardo Wurmus
5ed4c99e4c
gnu: r-spatstat-linnet: Update to 3.1-1. 
* gnu/packages/cran.scm (r-spatstat-linnet): Update to 3.1-1.
 2023-05-31 18:19:55 +02:00
Ricardo Wurmus
7b741bb54a
gnu: r-spatstat-geom: Update to 3.2-1. 
* gnu/packages/cran.scm (r-spatstat-geom): Update to 3.2-1.
 2023-05-31 18:19:55 +02:00
Ricardo Wurmus
3bf5efb933
gnu: r-spatstat-utils: Update to 3.0-3. 
* gnu/packages/cran.scm (r-spatstat-utils): Update to 3.0-3.
 2023-05-31 18:19:55 +02:00
Ricardo Wurmus
6ffbd31b89
gnu: r-spatstat-model: Update to 3.2-4. 
* gnu/packages/cran.scm (r-spatstat-model): Update to 3.2-4.
 2023-05-31 18:19:55 +02:00
Ricardo Wurmus
c3c5aeb666
gnu: r-spatstat-explore: Update to 3.2-1. 
* gnu/packages/cran.scm (r-spatstat-explore): Update to 3.2-1.
 2023-05-31 18:19:55 +02:00
Ricardo Wurmus
11f8669e4d
gnu: r-scatterpie: Update to 0.2.0. 
* gnu/packages/cran.scm (r-scatterpie): Update to 0.2.0.
 2023-05-31 18:19:54 +02:00
Ricardo Wurmus
278ab76489
gnu: r-qgraph: Update to 1.9.5. 
* gnu/packages/cran.scm (r-qgraph): Update to 1.9.5.
 2023-05-31 18:19:54 +02:00
Ricardo Wurmus
a29c730c0e
gnu: r-stanheaders: Update to 2.26.25. 
* gnu/packages/cran.scm (r-stanheaders): Update to 2.26.25.
 2023-05-31 18:19:54 +02:00
Ricardo Wurmus
51f686edd8
gnu: r-quanteda: Update to 3.3.1. 
* gnu/packages/cran.scm (r-quanteda): Update to 3.3.1.
 2023-05-31 18:19:54 +02:00
Ricardo Wurmus
e9dc2ed219
gnu: r-influencer: Update to 0.1.5. 
* gnu/packages/cran.scm (r-influencer): Update to 0.1.5.
 2023-05-31 18:19:54 +02:00
Ricardo Wurmus
29104c1aa0
gnu: r-biclust: Update to 2.0.3.1. 
* gnu/packages/cran.scm (r-biclust): Update to 2.0.3.1.
 2023-05-31 18:19:54 +02:00
Ricardo Wurmus
801c3d999b
gnu: r-imager: Update to 0.45.2. 
* gnu/packages/cran.scm (r-imager): Update to 0.45.2.
 2023-05-31 18:19:54 +02:00