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13787 Commits

Author SHA1 Message Date
Marius Bakke
f07e53fb53
gnu: gflags: Update to 2.2.0. 
* gnu/packages/popt.scm (gflags): Update to 2.2.0.
[source]: Use tarball release.
 2017-01-21 12:44:42 +01:00
Ben Woodcroft
c0dee46c85
gnu: r-vegan: Update to 2.4-2. 
* gnu/packages/bioinformatics.scm (r-vegan): Update to 2.4-2.
 2017-01-21 18:17:16 +10:00
Ben Woodcroft
cda0f9a4a9
gnu: diamond: Update to 0.8.34. 
* gnu/packages/bioinformatics.scm (diamond): Update to 0.8.34.
 2017-01-21 17:28:11 +10:00
Mark H Weaver
5aa0932eaf
gnu: linux-libre: Update to 4.9.5. 
* gnu/packages/linux.scm (%linux-libre-version, %linux-libre-hash)
(linux-libre): Update to 4.9.5.
 2017-01-20 21:56:02 -05:00
Mark H Weaver
523fe6a3ab
gnu: linux-libre@4.4: Update to 4.4.44. 
* gnu/packages/linux.scm (linux-libre-4.4): Update to 4.4.44.
 2017-01-20 21:54:47 -05:00
Mark H Weaver
13c0eccbbb
gnu: linux-libre@4.1: Update to 4.1.38. 
* gnu/packages/linux.scm (linux-libre-4.1): Update to 4.1.38.
 2017-01-20 21:48:43 -05:00
Ludovic Courtès
079f013be2
gnu: gnutls: Add 'guile2.2-gnutls'. 
Suggested by Chris Webber.

* gnu/packages/tls.scm (gnutls/guile-2.2): New variable.
 2017-01-20 21:39:17 +01:00
Ludovic Courtès
be051880c4
services: Reindent vpn.scm. 
This fixes indentation of 'match' forms.

* gnu/services/vpn.scm: Pass through 'indent-code.el'.
 2017-01-20 21:39:17 +01:00
Feng Shu
7386a0481c
gnu: Add fcitx-configtool. 
* gnu/packages/fcitx.scm (fcitx-configtool): New variable.

Signed-off-by: Marius Bakke <mbakke@fastmail.com>
 2017-01-20 19:35:47 +01:00
Marius Bakke
ff99fe6505
gnu: datamash: Update to 1.1.1. 
* gnu/packages/datamash.scm (datamash): Update to 1.1.1.
 2017-01-20 19:35:47 +01:00
Marius Bakke
53b8ee2881
gnu: gd: Fix source URL. 
This is a followup to 3f0603ea65.

* gnu/packages/gd.scm (gd-2.2.4)[source]: Fix URL.
 2017-01-20 19:35:46 +01:00
Leo Famulari
3f0603ea65
gnu: gd: Replace with gd-2.2.4 [fixes CVE-2016-{6912,9317} and others]. 
'CHANGELOG.md' in the development repository lists several fixed bugs with
potential security implications:

https://github.com/libgd/libgd/blob/gd-2.2.4/CHANGELOG.md

* gnu/packages/gd.scm (gd)[replacement]: New field.
(gd-2.2.4): New variable.
 2017-01-20 10:30:08 -05:00
Ricardo Wurmus
2923f3e5b9
gnu: r-msnid: Expand abbreviation in description. 
* gnu/packages/bioinformatics.scm (r-msnid)[description]: Expand "MS/MS"
to "tandem mass spectrometry".
 2017-01-20 15:38:03 +01:00
Ricardo Wurmus
e614d6398a
gnu: r-msnbase: Expand abbreviation in description. 
* gnu/packages/bioinformatics.scm (r-msnbase)[description]: Expand "MS"
to "mass spectrometry".
 2017-01-20 15:38:03 +01:00
Raoul Jean Pierre Bonnal
e431eb670d
gnu: Add r-fastica. 
* gnu/packages/statistics.scm (r-fastica): New variable.
 2017-01-20 15:38:03 +01:00
Raoul Jean Pierre Bonnal
793f2edbbc
gnu: Add r-lars. 
* gnu/packages/statistics.scm (r-lars): New variable.
 2017-01-20 15:38:03 +01:00
Raoul Jean Pierre Bonnal
efba686c80
gnu: Add r-mixtools. 
* gnu/packages/statistics.scm (r-mixtools): New variable.
 2017-01-20 15:38:03 +01:00
Raoul Jean Pierre Bonnal
c6017f7222
gnu: Add r-cowplot. 
* gnu/packages/statistics.scm (r-cowplot): New variable.
 2017-01-20 15:38:02 +01:00
Christopher Baines
b726096bc5
services: network-manager: Use record for configuration. 
* gnu/services/network-manager.scm (<network-manager-configuration>): New
record type.
(network-manager-shpeherd-service): Change to use the
network-manager-configuration record, rather than a package.  Generate a
simple configuration file from the network-manager-configuration record.
(network-manager-service-type): Update extensions to take the
network-manager-configuration rather than a package.
(network-manager-service): Remove function, the network-manager-service-type
can be used instead, and this avoids keeping the function signature and value
coresponding to the service type in sync.
* doc/guix.texi (Networking Services): Remove documentation for the removed
network-manager-service procedure, and add documentation of the
network-manager-service-type variable and network-manager-configuration
record.

Signed-off-by: 宋文武 <iyzsong@member.fsf.org>
 2017-01-20 21:45:56 +08:00
Efraim Flashner
4f98c3c553
gnu: obs: Update to 17.0.2. 
* gnu/packages/video.scm (obs): Update to 17.0.2.
[inputs]: Add alsa-lib, fontconfig, speex.
 2017-01-20 11:33:19 +02:00
Leo Famulari
10a8746968
gnu: mariadb: Update to 10.1.21 [security fixes]. 
Fixes CVE-2016-3238 and CVE-2017-{3238,3243,3244,3257,3258,3265,3291,3312,3317,
3318}.

* gnu/packages/databases.scm (mariadb): Update to 10.1.21.
 2017-01-19 21:24:25 -05:00
Ludovic Courtès
caa7816673
services: Create /var/run/utmpx upon activation. 
This fixes a bug whereby /var/run/utmpx would never be created, and thus
accounting information would be missing.

* gnu/services.scm (activation-script): Create /var/run/utmpx.
* gnu/tests/base.scm (run-basic-test)["utmpx entry"]: New test.
 2017-01-19 23:45:11 +01:00
Ludovic Courtès
0691c9c05d
gnu: ansible: Update to 2.2.1 [fixes CVE-2016-9587]. 
* gnu/packages/admin.scm (ansible): Update to 2.2.1.
 2017-01-19 17:59:23 +01:00
Ludovic Courtès
11f3885bb5
tests: Add 'nginx-service-type' test. 
* gnu/tests/web.scm: New file.
* gnu/local.mk (GNU_SYSTEM_MODULES): Add it.
 2017-01-19 14:44:59 +01:00
Ludovic Courtès
dc72a7f7f7
services: nginx: Add default values for <nginx-configuration> fields. 
* gnu/services/web.scm (<nginx-configuration>)[nginx, log-directory]
[run-directory, server-blocks, upstream-blocks, file]: Add default
values.
 2017-01-19 14:44:59 +01:00
Christopher Baines
9c557a69ae
services: nginx: Add support for 'location' blocks. 
* gnu/services/web.scm (<nginx-server-configuration>): Add field 'locations'.
(<nginx-location-configuration>): New record type.
(<nginx-named-location-configuration>): New record type.
(nginx-location-config): New function.
(default-nginx-server-config): Include locations.
* doc/guix.texi (Web Services): Document the new nginx-location-configuration
and nginx-named-location-configuration data types, as well as the changes to
the nginx-server-configuration.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
 2017-01-19 14:44:59 +01:00
Christopher Baines
cb341293fa
services: nginx: Add support the 'upstream' module. 
* gnu/services/web.scm (<nginx-upstream-configuration>): New record type.
(<nginx-configuration>): Add new field upstream-blocks.
(nginx-upstream): New function.
(default-nginx-config): Add upstream-list parameter.
(nginx-service): Add optional upstream list keyword argument.
* doc/guix.texi (Web Services): Document the new nginx-upstream-configuration
data type and changes to the nginx function.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
 2017-01-19 14:44:59 +01:00
Christopher Baines
cb6d322afc
gnu: dnsmasq: Enable dbus support. 
* gnu/pacakges/dns.scm (dnsmasq): Enable dbus support to allow for
NetworkManager to use dnsmasq.
[native-inputs]: Add pkg-config.
[inputs]: Add dbus.
[arguments]: Add COPTS="-DHAVE_DBUS" to make-flags.

Signed-off-by: 宋文武 <iyzsong@member.fsf.org>
 2017-01-19 20:05:24 +08:00
Ricardo Wurmus
e87cb754a6
gnu: Add libgig. 
* gnu/packages/music.scm (libgig): New variable.
 2017-01-19 09:54:15 +01:00
Ludovic Courtès
67fee545cc
gnu: Add Heimdal. 
* gnu/packages/kerberos.scm (heimdal): New variable.
 2017-01-19 00:11:15 +01:00
Ludovic Courtès
89e34644d9
gnu: Move Kerberos implemetations to (gnu packages kerberos). 
* gnu/packages/mit-krb5.scm: Remove.
* gnu/packages/shishi.scm: Remove.
* gnu/packages/kerberos.scm: New file, from the concatenation of these
two.
* gnu/local.mk (GNU_SYSTEM_MODULES): Adjust accordingly.
* gnu/packages/admin.scm, gnu/packages/cyrus-sasl.scm,
gnu/packages/gnome.scm, gnu/packages/gnuzilla.scm,
gnu/packages/gsasl.scm, gnu/packages/java.scm,
gnu/packages/networking.scm, gnu/packages/nfs.scm,
gnu/packages/onc-rpc.scm, gnu/packages/ssh.scm,
gnu/packages/web.scm: Adjust accordingly.
 2017-01-19 00:11:15 +01:00
ng0
877c6163fa
gnu: stagit: Update to 0.5. 
* gnu/packages/version-control.scm (stagit): Update to 0.5.
 2017-01-18 22:46:50 +01:00
Efraim Flashner
9ca1972767
gnu: qemu: Fix CVE-2017-5525, CVE-2017-5526. 
* gnu/packages/qemu.scm (qemu)[source]: Add patches.
* gnu/packages/patches/qemu-CVE-2017-5525.patch,
gnu/packages/patches/qemu-CVE-2017-5526.patch: New files.
* gnu/local.mk (dist_patch_DATA): Register them.
 2017-01-18 23:32:49 +02:00
Marius Bakke
df893a3855
gnu: Add python-cram. 
* gnu/packages/python.scm (python-cram, python2-cram): New variables.
 2017-01-18 21:28:59 +01:00
Marius Bakke
b9f771a795
gnu: Add leveldb. 
* gnu/packages/databases.scm (leveldb): New variable.
 2017-01-18 21:23:23 +01:00
ng0
cd4a232dd5
gnu: Add mcabber. 
* gnu/packages/messaging.scm (mcabber): New variable.

Co-authored-by: Marius Bakke <mbakke@fastmail.com>
 2017-01-18 20:24:18 +01:00
ng0
fdfb4b9604
gnu: Add loudmouth. 
* gnu/packages/messaging.scm (loudmouth): New variable.

Signed-off-by: Marius Bakke <mbakke@fastmail.com>
 2017-01-18 20:24:16 +01:00
ng0
395751c05d
gnu: Add menumaker. 
* gnu/packages/wm.scm (menumaker): New variable.

Signed-off-by: Marius Bakke <mbakke@fastmail.com>
 2017-01-18 19:11:22 +01:00
Marius Bakke
0d53d55cca
gnu: xf86-input-evdev: Update to 2.10.5. 
* gnu/packages/xorg.scm (xf86-input-evdev): Update to 2.10.5.
 2017-01-18 18:28:35 +01:00
Marius Bakke
e19b0bd157
gnu: xf86-video-r128: Update to 6.10.2. 
* gnu/packages/xorg.scm (xf86-video-r128): Update to 6.10.2.
 2017-01-18 18:25:55 +01:00
Marius Bakke
a354c7d8b4
gnu: xf86-video-savage: Update to 2.3.9. 
* gnu/packages/xorg.scm (xf86-video-savage): Update to 2.3.9.
 2017-01-18 18:23:53 +01:00
Marius Bakke
619ff9329d
gnu: xf86-video-trident: Update to 1.3.8. 
* gnu/packages/xorg.scm (xf86-video-trident): Update to 1.3.8.
 2017-01-18 18:22:12 +01:00
Marius Bakke
a0029fda3b
gnu: xf86-video-glint: Update to 1.2.9. 
* gnu/packages/xorg.scm (xf86-video-glint): Update to 1.2.9.
[source]: Remove upstreamed patch.
* gnu/packages/patches/xf86-video-glint-remove-mibstore.patch: Delete file.
* gnu/local.mk (dist_patch_DATA): Remove it.
 2017-01-18 18:19:49 +01:00
Marius Bakke
f733e60345
gnu: xf86-video-nv: Update to 2.1.21. 
* gnu/packages/xorg.scm (xf86-video-nv): Update to 2.1.21.
[source]: Remove upstreamed patch.
* gnu/packages/patches/xf86-video-nv-remove-mibstore.patch: Delete file.
* gnu/local.mk (dist_patch_DATA): Remove it.
 2017-01-18 18:15:56 +01:00
Marius Bakke
3a50b71298
gnu: xf86-video-siliconmotion: Update to 1.7.9. 
* gnu/packages/xorg.scm (xf86-video-siliconmotion): Update to 1.7.9.
 2017-01-18 18:11:42 +01:00
Marius Bakke
c2a970582e
gnu: xf86-video-mga: Update to 1.6.5. 
* gnu/packages/xorg.scm (xf86-video-mga): Update to 1.6.5.
 2017-01-18 18:10:04 +01:00
Marius Bakke
798dd616e3
gnu: xf86-video-sis: Update to 0.10.9. 
* gnu/packages/xorg.scm (xf86-video-sis): Update to 0.10.9.
 2017-01-18 18:08:35 +01:00
Marius Bakke
76400ca594
gnu: xf86-video-tdfx: Update to 1.4.7. 
* gnu/packages/xorg.scm (xf86-video-tdfx): Update to 1.4.7.
 2017-01-18 18:05:40 +01:00
Ricardo Wurmus
1778ea740e
gnu: multiqc: Add python-nose to inputs. 
* gnu/packages/bioinformatics.scm (multiqc)[propagated-inputs]: Add
python-nose.
 2017-01-18 16:09:49 +01:00
Efraim Flashner
7c524e0f6b
gnu: screen: Update to 4.5.0. 
* gnu/packages/screen.scm (screen): Update to 4.5.0.
[home-page]: Use https.
 2017-01-18 15:51:04 +02:00