Ricardo Wurmus
c649d31957
gnu: r-tximport: Update to 1.14.2.
...
* gnu/packages/bioinformatics.scm (r-tximport): Update to 1.14.2.
[native-inputs]: Add r-knitr.
2020-03-24 11:06:00 +01:00
Ricardo Wurmus
c10bef9bd3
gnu: r-caret: Update to 6.0-86.
...
* gnu/packages/cran.scm (r-caret): Update to 6.0-86.
[native-inputs]: Add r-knitr.
2020-03-24 11:06:00 +01:00
Ricardo Wurmus
1e40a27465
gnu: r-batchtools: Update to 0.9.13.
...
* gnu/packages/cran.scm (r-batchtools): Update to 0.9.13.
[native-inputs]: Add r-knitr.
2020-03-24 11:06:00 +01:00
Ricardo Wurmus
6005efa40f
gnu: r-mcmc: Update to 0.9-7.
...
* gnu/packages/cran.scm (r-mcmc): Update to 0.9-7.
2020-03-24 11:06:00 +01:00
Ricardo Wurmus
d3836473de
gnu: r-proc: Update to 1.16.2.
...
* gnu/packages/cran.scm (r-proc): Update to 1.16.2.
2020-03-24 11:06:00 +01:00
Ricardo Wurmus
c5036a4f39
gnu: r-xgboost: Update to 1.0.0.1.
...
* gnu/packages/cran.scm (r-xgboost): Update to 1.0.0.1.
[native-inputs]: Add r-knitr.
2020-03-24 11:06:00 +01:00
Ricardo Wurmus
2f445f0da3
gnu: r-radiant-data: Update to 1.3.4.
...
* gnu/packages/cran.scm (r-radiant-data): Update to 1.3.4.
[propagated-inputs]: Remove r-gridextra; add r-mass, r-patchwork, and
r-randomizr.
2020-03-24 11:06:00 +01:00
Ricardo Wurmus
ff248f41cb
gnu: r-patchwork: Update to 1.0.0.
...
* gnu/packages/cran.scm (r-patchwork): Update to 1.0.0.
[source]: Fetch from CRAN.
[native-inputs]: Add r-knitr.
2020-03-24 11:06:00 +01:00
Ricardo Wurmus
d8dc2a7c1e
gnu: r-igraph: Update to 1.2.5.
...
* gnu/packages/graph.scm (r-igraph): Update to 1.2.5.
2020-03-24 11:06:00 +01:00
Ricardo Wurmus
f7a21df523
gnu: r-robustbase: Update to 0.93-6.
...
* gnu/packages/statistics.scm (r-robustbase): Update to 0.93-6.
2020-03-24 11:06:00 +01:00
Ricardo Wurmus
7e349066e6
gnu: r-hmisc: Update to 4.4-0.
...
* gnu/packages/statistics.scm (r-hmisc): Update to 4.4-0.
2020-03-24 11:06:00 +01:00
Ricardo Wurmus
670cbe2c3c
gnu: r-pkgmaker: Update to 0.31.1.
...
* gnu/packages/statistics.scm (r-pkgmaker): Update to 0.31.1.
2020-03-24 11:06:00 +01:00
Ricardo Wurmus
d16a4d1f96
gnu: r-dt: Update to 0.13.
...
* gnu/packages/statistics.scm (r-dt): Update to 0.13.
[native-inputs]: Add r-knitr.
2020-03-24 11:05:59 +01:00
Ricardo Wurmus
f871696911
gnu: r-locfit: Update to 1.5-9.2.
...
* gnu/packages/statistics.scm (r-locfit): Update to 1.5-9.2.
2020-03-24 11:05:59 +01:00
Ricardo Wurmus
e0d6a7da74
gnu: Add r-randomizr.
...
* gnu/packages/cran.scm (r-randomizr): New variable.
2020-03-24 11:05:59 +01:00
Guillaume Le Vaillant
47a2306415
gnu: sbcl: Increase maximum heap size to 2Gb.
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* gnu/packages/lisp.scm (sbcl)[arguments]: Add the "--dynamic-space-size=2Gb"
option in the build phase.
2020-03-24 09:31:43 +01:00
Michael Rohleder
0f96fd6454
gnu: dialog: Update to 1.3-20200228.
...
* gnu/packages/ncurses.scm (dialog): Update to 1.3-20200228.
Signed-off-by: Leo Famulari <leo@famulari.name>
2020-03-23 21:17:55 -04:00
Leo Famulari
aae5f89db0
gnu: Git: Update to 2.26.0.
...
* gnu/packages/version-control.scm (git): Update to 2.26.0.
[arguments]: Adjust the 'install-credential-netrc' phase to upstream changes.
2020-03-23 21:17:46 -04:00
Mathieu Othacehe
acd595c237
Revert "gnu: youtube-dl: Add 'ffmpeg' as input."
...
This reverts commit 4233e74b39
2020-03-23 21:51:25 +01:00
Leo Famulari
a11237e40a
gnu: Mutt: Update to 1.13.4.
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* gnu/packages/mail.scm (mutt): Update to 1.13.4.
[source]: Prefer HTTPS URL and replace FTP URL with HTTP.
2020-03-23 15:53:11 -04:00
Alexandros Theodotou
0a6f68982b
gnu: sord: Add pcre to inputs.
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* gnu/packages/rdf.scm (sord)[inputs]: Add pcre needed for sord_validate.
2020-03-23 20:48:49 +01:00
Brice Waegeneire
7884fc434f
gnu: youtube-dl: Add zsh completion.
...
* gnu/packages/video.scm (youtube-dl)[arguments]: Add phase
install-completion.
Signed-off-by: Mathieu Othacehe <m.othacehe@gmail.com>
2020-03-23 19:02:46 +01:00
Brice Waegeneire
4233e74b39
gnu: youtube-dl: Add 'ffmpeg' as input.
...
* gnu/packages/video.scm (youtube-dl)[arguments]: Add phase
wrap-executable.
[inputs]: Add ffmpeg.
Signed-off-by: Mathieu Othacehe <m.othacehe@gmail.com>
2020-03-23 19:02:44 +01:00
Brice Waegeneire
1a5443e86b
doc: Fix typo in example.
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* doc/guix.texi (Invoking guix deploy): Fix example to use '%user'
variable defined above.
Signed-off-by: Mathieu Othacehe <m.othacehe@gmail.com>
2020-03-23 18:57:01 +01:00
Brice Waegeneire
a9f2c210f3
system: Export 'operating-system-kernel-loadable-modules'.
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* gnu/system.scm: Export 'operating-system-kernel-loadable-modules'.
Signed-off-by: Mathieu Othacehe <m.othacehe@gmail.com>
2020-03-23 18:52:31 +01:00
Maxim Cournoyer
f2c698bd3e
gnu: emacs-lua-mode: Update to 20191204.
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* (emacs-lua-mode): Update to 20191204.
2020-03-23 13:49:39 -04:00
Maxim Cournoyer
09c09c4c7c
gnu: emacs-ert-runner: Update to 0.8.0.
...
* (emacs-ert-runner): Update to 0.8.0.
2020-03-23 13:49:38 -04:00
Maxim Cournoyer
80168c4b5b
gnu: emacs-dash: Update to 2.17.0.
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* (emacs-dash): Update to 2.17.0.
2020-03-23 13:49:38 -04:00
Mathieu Othacehe
f9b6f75d1c
installer: Fix cow-store umount issue.
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* gnu/installer/final.scm (kill-cow-users): Ignore exception that could be
raised if a process disappears between reading its pid and its maps file.
2020-03-23 18:46:40 +01:00
Tobias Geerinckx-Rice
5490b2c733
gnu: parallel: Update to 20200322.
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* gnu/packages/parallel.scm (parallel): Update to 20200322.
2020-03-23 18:35:27 +01:00
Tobias Geerinckx-Rice
c2d468a111
gnu: extremetuxracer: Update to 0.8.0.
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* gnu/packages/games.scm (extremetuxracer): Update to 0.8.0.
2020-03-23 18:35:27 +01:00
Alexandros Theodotou
d3e7282ec3
gnu: Add zlfo.
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* gnu/packages/music.scm (zlfo): New variable.
Signed-off-by: Jakub Kądziołka <kuba@kadziolka.net>
2020-03-23 15:39:02 +01:00
Alexandros Theodotou
360ebe50b5
gnu: Add ztoolkit-rsvg.
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* gnu/packages/audio.scm (ztoolkit-rsvg): New variable.
Signed-off-by: Jakub Kądziołka <kuba@kadziolka.net> [with modifications]
2020-03-23 15:39:01 +01:00
Alexandros Theodotou
2f4faccc6f
gnu: Add ztoolkit.
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* gnu/packages/audio.scm (ztoolkit): New variable.
Signed-off-by: Jakub Kądziołka <kuba@kadziolka.net>
2020-03-23 15:39:00 +01:00
Roel Janssen
7ff6395100
gnu: Add circos.
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* gnu/local.mk: Register circos-remove-findbin.patch.
* gnu/packages/patches/circos-remove-findbin.patch: New file.
* gnu/packages/perl.scm: New variable.
2020-03-23 11:42:36 +01:00
Alexandros Theodotou
591faabd8c
gnu: Add python-gcovr.
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* gnu/packages/python-xyz.scm (python-gcovr): New variable.
Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2020-03-23 10:48:18 +01:00
Alexandros Theodotou
670da39888
gnu: Add lv2toweb.
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* gnu/packages/audio.scm (lv2toweb): New variable.
Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2020-03-23 10:48:18 +01:00
Ludovic Courtès
8bc745052e
machine: ssh: Better report missing initrd modules.
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* gnu/machine/ssh.scm (machine-check-initrd-modules): Improve message
upon module mismatch.
2020-03-23 10:48:17 +01:00
Ludovic Courtès
1292372725
deploy: Write a message upon successful deployment.
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* guix/scripts/deploy.scm (guix-deploy): Write message upon successful
deployment.
2020-03-23 10:48:17 +01:00
Ludovic Courtès
1bb248d0b1
deploy: Show what machines will be deployed.
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* guix/scripts/deploy.scm (show-what-to-deploy): New procedure.
(guix-deploy): Call it.
2020-03-23 10:48:17 +01:00
Ludovic Courtès
7b322d3c4c
ui: Add 'indented-string'.
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* guix/scripts/pull.scm (display-news-entry): Remove extra space in
format string for 'indented-string'.
(indented-string): Remove.
(display-new/upgraded-packages)[pretty]: Pass #:initial-indent? to
'indented-string'.
* guix/ui.scm (indented-string): New procedure.
2020-03-23 10:48:17 +01:00
Ludovic Courtès
ea6e2299b4
machine: ssh: Make sanity checks in a single round trip.
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* gnu/machine/ssh.scm (<remote-assertion>): New record type.
(remote-let): New macro.
(machine-check-file-system-availability): Rewrite to use 'remote-let'
instead of 'mlet' and 'machine-remote-eval'.
(machine-check-initrd-modules): Likewise.
(machine-check-building-for-appropriate-system): Make non-monadic.
(check-deployment-sanity): Rewrite to gather all the assertions as a
single gexp and pass it to 'machine-remote-eval'.
2020-03-23 10:48:17 +01:00
Ludovic Courtès
8f53d73493
ssh: 'send-files' reports missing modules on the remote host.
...
Reported by Mikael Djurfeldt <mikael@djurfeldt.com>
in <https://bugs.gnu.org/40125 >.
* guix/ssh.scm (send-files)[inferior-remote-eval*]: New procedure.
[missing]: Use it. Add an explicit 'resolve-module' call.
(report-inferior-exception): New procedure.
2020-03-23 10:48:17 +01:00
Leo Famulari
1eb27d5cae
Re-order the armhf linux-libre kernel packages to fix the build.
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This is a followup to commit 37f8c50cdc
2020-03-23 01:46:48 -04:00
Vagrant Cascadian
058e96c59f
gnu: Add linux-libre-arm64-generic.
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* gnu/packages/linux (linux-libre-arm64-generic): New variable.
2020-03-22 20:55:42 -07:00
Vagrant Cascadian
37f8c50cdc
gnu: linux-libre-arm-veyron: Deprecate package.
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* gnu/packages/linux (linux-libre-arm-veyron): Mark as deprecated package.
(kernel-config-veyron): Remove obsolete function.
* gnu/system/examples/asus-c201.tmpl: Update to use linux-libre-arm-generic.
* gnu/packages/aux-files/linux-libre/5.4-arm-veyron.conf: Delete file.
* Makefile.am (AUX_FILES): Update accordingly.
2020-03-22 20:55:37 -07:00
Maxim Cournoyer
4ef89d884d
gnu: emacs-elpy: Update to 1.32.0.
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* gnu/packages/emacs-xyz.scm (emacs-elpy): Update to 1.32.0.
[phases]{fake-virtualenv}: Rename to 'do-not-use-virtualenv. Use the new
ELPY_TEST_DONT_USE_VIRTUALENV environment variable to skip tests using
virtualenv, and set the elpy-rpc-virtualenv-path default value to 'system so
that a virtualenv is not needed.
[native-inputs]: Move the Python dependencies to...
[propagated] ...here. This is so that Elpy doesn't nag users with fetching
those from PyPI. Add python-rope.
Fixes <https://bugs.gnu.org/40079 >.
Reported-by: sirgazil <sirgazil@zoho.com>
2020-03-22 21:17:39 -04:00
Maxim Cournoyer
4cbd60698d
gnu: emacs: Patch references to /bin/sh.
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When attempting to run ert-runner in the build side environment where /bin/sh
doesn't exist as part of the emacs-elpy test suite, Emacs was throwing the
error "Searching for program: No such file or directory, /bin/sh". This is
because the default shell when SHELL is not set was "/bin/sh", as can be seen
in callproc.c:
sh = getenv ("SHELL");
Vshell_file_name = build_string (sh ? sh : "/bin/sh");
Thus, patch the occurrences of "/bin/sh" in the source files of Emacs to refer
to their correct store location.
* gnu/packages/emacs.scm (emacs)[phases]{patch-program-file-names}: Add phase.
2020-03-22 21:17:39 -04:00
Maxim Cournoyer
393c5e6928
gnu: emacs-minimal: Install the custom site-start file.
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This makes the EMACS-MINIMAL package more generally useful, by adding support
to load autoload definitions. Note that this doesn't negatively impact the
performance of the emacs-build-system, because at that time the --quick option
is used, which disables loading site-start.el (which is the one calling
GUIX-EMACS-AUTOLOAD-PACKAGES).
* gnu/packages/emacs.scm (emacs-minimal)[phases]: Do not delete the
'install-site-start phase.
[inputs]: Add the emacs/guix-emacs.el auxiliary file.
2020-03-22 21:17:39 -04:00
Maxim Cournoyer
3bd3a6257f
gnu: emacs: Re-indent.
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* gnu/packages/emacs.scm (emacs): Fix indentation.
2020-03-22 21:17:39 -04:00
