5199 Commits

Author SHA1 Message Date
Pierre Neidhardt
5a08660ecb
build-system/asdf: Add support for component-less systems.
* guix/build/lisp-utils.scm (make-asd-file): Ensure lib directory exists and
check if prebuilt bundle system was generated.
(generate-system-definition): Add :class and :components only if prebuilt
system was generated.
2020-06-18 17:14:08 +02:00
Ludovic Courtès
05f79da93f
profiles: 'linux-module-database' hooks gracefully handles module-less kernels.
Fixes <https://bugs.gnu.org/41924>.

* guix/profiles.scm (linux-module-database)[build]: Arrange so
'directory-entries' always returns a list.  Add 'match' clause for the
empty list.

Co-authored-by: Ivan Kozlov <kanichos@yandex.ru>
2020-06-18 14:48:17 +02:00
Ludovic Courtès
fea072d727
profiles: Reindent 'linux-module-database'.
* guix/profiles.scm (linux-module-database): Reindent.
2020-06-18 14:48:17 +02:00
Ludovic Courtès
3b72618f6e
nar: Use (guix i18n).
* guix/nar.scm: Use (guix i18n) instead of (guix ui).
2020-06-18 14:48:17 +02:00
Ludovic Courtès
d7fb553801
nar: Avoid opening the database an additional time.
* guix/nar.scm (finalize-store-file): Call 'register-items' and pass it
DB.  This avoids opening the database a second time and hopefully
reduces contention on 'db.sqlite-shm'.
2020-06-18 14:48:17 +02:00
Ludovic Courtès
97a46055ca
database: 'register-items' takes an open database.
* guix/store/database.scm (store-database-directory)
(store-database-file): New procedures.
(call-with-database): Add call to 'mkdir-p'.
(register-items): Add 'db' parameter and remove #:state-directory and #:schema.
(register-path): Use 'store-database-file' and 'with-database', and
parameterize SQL-SCHEMA.
* gnu/build/image.scm (register-closure): Likewise.
* gnu/build/vm.scm (register-closure): Likewise.
* guix/scripts/pack.scm (store-database)[build]: Likewise.
2020-06-18 14:48:17 +02:00
Ludovic Courtès
f9a0fc9dbb
build-system/gnu: Fix 'install' phase of 'gnu-dist'.
* guix/build/gnu-dist.scm (install-dist): Fix 2nd argument to
'for-each'.
2020-06-18 14:48:17 +02:00
Ludovic Courtès
290c316621
repl: Fix typo that would lead ~/.guile to be used when running scripts.
This is a followup to c924e541390f9595d819edc33c19d979917c15ec.

* guix/scripts/repl.scm (guix-repl)[opts]: Set 'ignore-dot-guile?', with
question mark.
2020-06-18 14:48:17 +02:00
Ludovic Courtès
4ae762af76
channels: Warn when pulling from a mirror.
* guix/channels.scm (<channel-metadata>)[url]: New field.
(read-channel-metadata): Initialize it.
(read-channel-metadata-from-source): Likewise.
(channel-instance-primary-url): New procedure.
(latest-channel-instances): Compare CHANNEL's URL against it.
* doc/guix.texi (Channels)[Primary URL]: New subsection.
2020-06-17 19:32:43 +02:00
Ludovic Courtès
ba8c09f289
build-system/gnu: Rename "make dist" phase to 'build-dist'.
* guix/build/gnu-dist.scm (%dist-phases): Add BUILD under the name
'build-dist'.
2020-06-17 19:32:43 +02:00
Ludovic Courtès
7488d70c55
build-system/gnu: Simplify 'dist-package'.
* guix/build-system/gnu.scm (dist-package): Use default keyword
arguments in 'substitute-keyword-arguments'.
2020-06-17 19:32:43 +02:00
Ludovic Courtès
dabbddbbaa
build-system/gnu: Remove redundant 'unpack' phase from 'gnu-dist'.
This has become redundant with the standard 'unpack' phase since
17919a58012c38052133ed029450fdb98d01fb5c.

* guix/build/gnu-dist.scm (copy-source): Remove.
(%dist-phases): Remove 'unpack' phase.
2020-06-17 19:32:43 +02:00
Ludovic Courtès
03686f26cc
build-system/gnu: Remove Hydra-specific code from 'gnu-dist'.
* guix/build/gnu-dist.scm (install-dist): Remove code for
'hydra-build-products'.
2020-06-17 19:32:43 +02:00
Ludovic Courtès
2ee1cce324
build-system/gnu: Remove 'autoreconf' phase from 'gnu-dist'.
This has been superseded by the 'bootstrap' phase added in
189be331acfda1c242a9c85fca8d2a0356742f48.

* guix/build/gnu-dist.scm (autoreconf): Remove.
(%dist-phases): Remove it.
2020-06-17 19:32:43 +02:00
Ludovic Courtès
8cca3f939a
build-system/gnu: Adjust 'dist-package' to current 'autoconf-wrapper' API.
This is a followup to 464f5447396fcec9b43f7eab71d5d42b522a157f.

* guix/build-system/gnu.scm (dist-package): Do not call 'autoconf-wrapper'.
2020-06-17 19:32:43 +02:00
Ludovic Courtès
94642ab06b
profiles: Add comment at the top of 'manifest' file.
* guix/build/profiles.scm (build-profile): Add comment at the top of
MANIFEST-FILE.
2020-06-17 12:06:33 +02:00
Ludovic Courtès
838ac881ec
time-machine: Add '--disable-authentication'.
* guix/inferior.scm (cached-channel-instance): Add #:authenticate? and
pass it to 'latest-channel-instances'.
* guix/scripts/time-machine.scm (show-help, %options): Add
'--disable-authentication'.
(%default-options): Add 'authenticate-channels?'.
(guix-time-machine): Honor it.
2020-06-16 16:10:47 +02:00
Ludovic Courtès
a9eeeaa6ae
pull: Add '--disable-authentication'.
* guix/channels.scm (latest-channel-instance): Add #:authenticate? and
honor it.
(latest-channel-instances): Likewise.
* guix/scripts/pull.scm (%default-options): Add 'authenticate-channels?'.
(show-help, %options): Add '--disable-authentication'.
(guix-pull): Pass #:authenticate? to 'latest-channel-instances'.
* doc/guix.texi (Invoking guix pull): Document it.
2020-06-16 16:10:47 +02:00
Ludovic Courtès
c3f6f564e9
channels: Automatically add introduction for the official 'guix' channel.
This is useful when people run "guix time-machine -C channels.scm",
where 'channels.scm' misses channel introductions.

* guix/channels.scm (%default-channel-url): New variable.
(%default-channels): Use it.
(ensure-default-introduction): New procedure.
(latest-channel-instance): Call it.
2020-06-16 16:10:47 +02:00
Ludovic Courtès
5bafc70d1e
channels: Make 'validate-pull' call right after clone/pull.
This should come before patching, authentication, etc.

* guix/channels.scm (latest-channel-instance): Add #:validate-pull
parameter and honor it.  Return a single value: the instance.
(ensure-forward-channel-update): Change 'instance' parameter to 'commit'
and adjust accordingly.
(latest-channel-instances): Adjust to 'latest-channel-instance' changes.
* guix/scripts/pull.scm (warn-about-backward-updates): Change 'instance'
parameter to 'commit' and adjust accordingly.
* tests/channels.scm ("latest-channel-instances #:validate-pull"):
Likewise.
2020-06-16 16:10:47 +02:00
Ludovic Courtès
43badf261f
channels: 'latest-channel-instance' authenticates Git checkouts.
Fixes <https://bugs.gnu.org/22883>.

* guix/channels.scm (<channel>)[introduction]: New field.
(<channel-introduction>): New record type.
(%guix-channel-introduction): New variable.
(%default-channels): Use it.
(<channel-metadata>)[keyring-reference]: New field.
(%default-keyring-reference): New variable.
(read-channel-metadata, read-channel-metadata-from-source): Initialize
the 'keyring-reference' field.
(commit-short-id, verify-introductory-commit)
(authenticate-channel): New procedures.
(latest-channel-instance): Call 'authenticate-channel' when CHANNEL has
an introduction.
* tests/channels.scm (gpg+git-available?, commit-id-string): New
procedures.
("authenticate-channel, wrong first commit signer"):
("authenticate-channel, .guix-authorizations"): New tests.
* doc/guix.texi (Invoking guix pull): Mention authentication.
2020-06-16 16:10:47 +02:00
Ludovic Courtès
1e2b9bf2d4
tests: Move OpenPGP helpers to (guix tests gnupg).
* tests/git-authenticate.scm (key-id): Remove.
(%ed25519-public-key-file, %ed25519-secret-key-file)
(%ed25519bis-public-key-file, %ed25519bis-secret-key-file)
(read-openpgp-packet, key-fingerprint): Move to...
* guix/tests/gnupg.scm: ... here.
2020-06-16 16:10:46 +02:00
Ludovic Courtès
41946b79f1
git-authenticate: 'authenticate-commits' takes a #:keyring parameter.
* guix/git-authenticate.scm (authenticate-commits): Add #:keyring
parameter.
2020-06-16 16:10:46 +02:00
Ludovic Courtès
a450b4343b
git-authenticate: Cache takes a key parameter.
* guix/git-authenticate.scm (authenticated-commit-cache-file)
(cache-authenticated-commit, previously-authenticated-commits): Add
'key' parameter and honor it.
* build-aux/git-authenticate.scm (git-authenticate): Pass
"channels/guix" as the key.
2020-06-16 16:10:46 +02:00
Efraim Flashner
3646a44a14
build-system: cmake: Add substitutable keyword.
* guix/build-system/cmake.scm (cmake-build, cmake-cross-build): Add
substitutable keyword.
2020-06-16 16:40:27 +03:00
Tobias Geerinckx-Rice
38ee8f7dba
pack: Add zstd compressor.
* guix/scripts/pack.scm (%compressors): Add zstd.
* doc/guix.texi (Invoking guix pack): Document it.
2020-06-16 13:35:33 +02:00
Arun Isaac
bd03e99f66
ui: Use package-description-string.
* guix/ui.scm (package->recutils): Use package-description-string instead of
package-description and P_.
2020-06-15 23:31:56 +05:30
Arun Isaac
a1da0904a6
ui: Do not translate package synopsis a second time.
* guix/ui.scm (package->recutils): package-synopsis-string already returns a
translated string. Do not attempt to translate it again.
2020-06-15 23:31:56 +05:30
Arun Isaac
e70a884706
ui: Cut off search early if any regexp does not match.
* guix/ui.scm (relevance): When one of the regexps does not match, cut off
early and return 0. Do not try to match the remaining regexps.
2020-06-15 23:31:56 +05:30
Mathieu Othacehe
53e6195607
ci: Add build-products id field and export accessors.
* guix/ci.scm (build-product?, build-product-id,
build-product-type, build-product-file-size,
build-product-path): Export them,
[id]: new field.
2020-06-15 15:34:19 +02:00
Mathieu Othacehe
9e989d9e36
ci: Add status option to "latest-builds".
* guix/ci.scm (latest-builds): Add "status" option.
2020-06-15 15:33:42 +02:00
Tobias Geerinckx-Rice
c9ea4eecf4
download: Remove usa-mirror.go-parts.com mirror.
It incorrectly redirects 404s (at least) to the commercial home page.

* guix/download.scm (%mirrors): Remove usa-mirror.go-parts.com URLs.
2020-06-15 14:26:44 +02:00
Mathieu Othacehe
bb76f50b9b
ci: Fix buildproducts reading.
This is a follow-up of 4e05bbb093a17145fcabd48ea1d2c9cd7559084d.

* guix/ci.scm (<build>)[products]: Test for vector type, as products can be
"null".
2020-06-15 09:53:02 +02:00
Mathieu Othacehe
ef6f9f16fe
ci: Add job option to "latest-builds".
* guix/ci.scm (latest-builds): Add "job" option.
2020-06-15 09:15:08 +02:00
Mathieu Othacehe
4e05bbb093
ci: Add build products support.
* guix/ci.scm (<build-product>): New json mapping,
(<build)[products]: new field.
2020-06-15 09:15:08 +02:00
Konrad Hinsen
c924e54139
guix repl: Add script execution.
* guix/scripts/repl.scm: Add filename options for script execution.
* doc/guix.texi (Invoking guix repl): Document it.
* tests/guix-repl.sh: Test it.
* Makefile.am: (SH_TESTS): Add it.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2020-06-14 23:02:36 +02:00
Mathieu Othacehe
80f92866e3
scripts: system: Fix "init" command.
This is a follow-up of 7ca533c7237622d70b423033c4506217d9ce4014. The
introduced "target" variable is shadowing the target argument.

* guix/scripts/system.scm (perform-action): Rename "target" variable to
"target*".
2020-06-14 17:42:36 +02:00
Ludovic Courtès
993023a28e
lint: Add 'check-for-collisions' checker.
Suggested by Edouard Klein <edk@beaver-labs.com>.

* guix/profiles.scm (check-for-collisions): Export.
* guix/lint.scm (check-profile-collisions): New procedure.
(%local-checkers): Add 'profile-collisions' checker.
* tests/lint.scm ("profile-collisions: no warnings")
("profile-collisions: propagated inputs collide")
("profile-collisions: propagated inputs collide, store items"): New tests.
* doc/guix.texi (Invoking guix lint): Document it.
2020-06-14 15:34:42 +02:00
Ludovic Courtès
9acac9f9c6
profiles: Fix pathological performance of 'manifest-transitive-entries'.
For packages with lots of propagated inputs,
'manifest-transitive-entries', as called from 'check-for-collisions',
would exhibit pathological behavior.  For example, "guix install cl-ana"
wouldn't complete in 1mn; now, it's down to 20s.

The issue was that manifest entries would never be 'equal?' due to the
delayed field in <manifest-entry>.

* guix/profiles.scm (manifest-transitive-entries): Use a vhash instead
of a set.  Use 'manifest-entry=?' instead of 'equal?' when checking for
equality.
2020-06-14 15:34:41 +02:00
Ludovic Courtès
e66f243e92
ui: Set 'LESS' environment variable unconditionally.
Fixes <https://bugs.gnu.org/41811>.
Reported by Lars-Dominik Braun <lars@6xq.net>.

* guix/ui.scm (call-with-paginated-output-port): Remove (getenv "LESS")
call.
2020-06-14 15:34:38 +02:00
Marius Bakke
8ab70bae52
Merge branch 'staging' 2020-06-13 22:52:25 +02:00
Jan (janneke) Nieuwenhuizen
7ca533c723
image: Make 'find-image' non-monadic.
* gnu/system/image.scm (find-image): Make non-monadic.  Add 'target'
parameter.
* gnu/tests/install.scm (run-install): Update caller,
passing (%current-target-system).
* guix/scripts/system.scm (perform-action): Likewise.
2020-06-13 15:03:55 +02:00
Ricardo Wurmus
8e518d4802
guix: Update to Bioconductor 3.11.
* guix/build-system/r.scm (bioconductor-uri): Use new URL.
* guix/import/cran.scm (%bioconductor-version): Update to 3.11.
2020-06-13 01:19:38 +02:00
Christopher Baines
db6290af7c
lint: check-patch-file-names: Use origin-actual-file-name.
This avoids crashes for the patch-file-names checker where a <origin> is used
for a patch, but without a value for the file-name field. This is currently
the case with the bash package.

* guix/lint.scm (check-patch-file-names): Change origin-file-name to
origin-actual-file-name.
2020-06-12 22:26:47 +01:00
Ludovic Courtès
52c529ff20
git-authenticate: Disallow SHA1 (and MD5) signatures.
* guix/git-authenticate.scm (commit-signing-key): Add
 #:disallowed-hash-algorithms and honor it.
(authenticate-commit)[recent-commit?]: New variable.
Pass #:disallowed-hash-algorithms to 'commit-signing-key'.
* tests/git-authenticate.scm ("signed commits, SHA1 signature"): New test.
2020-06-12 18:56:11 +02:00
Efraim Flashner
205a0ecd5b
download: Add more apache mirrors.
* guix/download.scm (%mirrors): Add more apache mirrors.
2020-06-12 18:28:51 +03:00
Chris Marusich
21887021b9
guix: lint: Support origins in check-patch-file-names.
* guix/lint.scm (check-patch-file-names)[starts-with-package-name?]: New
procedure, extracted from the existing logic.  Using it, add a clause to
the match-lambda to handle origin records.
2020-06-11 22:30:14 -07:00
Marius Bakke
9b043df740
Merge branch 'master' into staging 2020-06-11 23:30:32 +02:00
Ludovic Courtès
03a70e4c19
packages: 'package-grafts' returns grafts for all the relevant outputs.
Fixes <https://bugs.gnu.org/41796>.
Reported by Jakub Kądziołka <kuba@kadziolka.net>.

* guix/packages.scm (input-graft): Add 'output' parameter and honor it.
Add OUTPUT to the cache key.
(input-cross-graft): Likewise.
(fold-bag-dependencies): Operate on inputs instead of nodes.  Turn
VISITED into a vhash instead of a set.  Pass PROC HEAD and OUTPUT
instead of just HEAD.
(bag-grafts): Adjust accordingly.
* tests/packages.scm ("package-grafts, dependency on several outputs"):
New test.
2020-06-11 19:05:05 +02:00
Caleb Ristvedt
8971f626f2
database: separate transaction-handling and retry-handling.
Previously call-with-transaction would both retry when SQLITE_BUSY errors were
thrown and do what its name suggested (start and rollback/commit a
transaction).  This changes it to do only what its name implies, which
simplifies its implementation.  Retrying is provided by the new
call-with-SQLITE_BUSY-retrying procedure.

* guix/store/database.scm (call-with-transaction): no longer restarts, new
  #:restartable? argument controls whether "begin" or "begin immediate" is
  used.
  (call-with-SQLITE_BUSY-retrying, call-with-retrying-transaction,
  call-with-retrying-savepoint): new procedures.
  (register-items): use call-with-retrying-transaction to preserve old
  behavior.

* .dir-locals.el (call-with-retrying-transaction,
  call-with-retrying-savepoint): add indentation information.
2020-06-10 21:54:35 -05:00