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78816 Commits

Author SHA1 Message Date
Marius Bakke
883227dde1
gnu: python-pydot: Update to 1.4.2. 
* gnu/packages/graphviz.scm (python-pydot): Update to 1.4.2.
[source](patches): Remove.
* gnu/packages/patches/python-pydot-regression-test.patch: Delete file.
* gnu/local.mk (dist_patch_DATA): Adjust accordingly.
 2022-01-18 19:35:55 +01:00
Marius Bakke
81b7bf40b2
gnu: python-pydot: Build with old pyparsing. 
* gnu/packages/graphviz.scm (python-pydot)[propagated-inputs]: Change from
PYTHON-PYPARSING to PYTHON-PYPARSING-2.4.7.
 2022-01-18 19:35:55 +01:00
Marius Bakke
02ffe4a4a9
gnu: python-kazoo: Update to 2.8.0. 
* gnu/packages/python-xyz.scm (python-kazoo): Update to 2.8.0.
 2022-01-18 19:35:55 +01:00
Marius Bakke
ad5efcf4c0
gnu: python-rdflib-jsonld: Update to 0.6.2. 
* gnu/packages/rdf.scm (python-rdflib-jsonld): Update to 0.6.2.
 2022-01-18 19:35:55 +01:00
Marius Bakke
2a4c271e61
gnu: python-rdflib: Update to 6.1.1. 
* gnu/packages/rdf.scm (python-rdflib): Update to 6.1.1.
[arguments]: Remove #:tests.  Add #:phases.
[native-inputs]: Change from PYTHON-NOSE to PYTHON-PYTEST.
(python-rdflib-5): New variable.
(python2-rdflib): Inherit from PYTHON-RDFLIB-5.
* gnu/packages/python-xyz.scm (python-prov): Change from PYTHON-RDFLIB to
PYTHON-RDFLIB-5.
* gnu/packages/bioinformatics.scm (cwltool): Likewise.
 2022-01-18 19:35:55 +01:00
Marius Bakke
ce58adbb3b
gnu: python-libusb1: Update to 2.0.1. 
* gnu/packages/libusb.scm (python-libusb1): Update to 2.0.1.
[arguments]: Remove trailing #t's and adjust file name.
 2022-01-18 19:35:55 +01:00
Marius Bakke
146e931523
gnu: python-lazr-delegates: Fix test failure. 
* gnu/packages/python-xyz.scm (python-lazr-delegates)[arguments]: Invoke
'nosetests' directly instead of through setup.py.  While at it, respect
'--without-tests'.
 2022-01-18 19:35:54 +01:00
Marius Bakke
f5e78d4546
gnu: python-gevent: Update to 21.12.0. 
* gnu/packages/python-xyz.scm (python-gevent): Update to 21.12.0.
[propagated-inputs]: Simplify.  Move PYTHON-OBJGRAPH ...
[native-inputs]: ... here.  Remove PYTHON-SIX.
 2022-01-18 19:35:54 +01:00
Marius Bakke
a59f4d111d
gnu: arm-trusted-firmware-rk3399: Remove input labels. 
* gnu/packages/firmware.scm (arm-trusted-firmware-rk3399)[native-inputs]:
Use (modify-inputs ...).
 2022-01-18 19:35:54 +01:00
Marius Bakke
f11578e8d9
gnu: arm-trusted-firmware: Remove input labels. 
* gnu/packages/firmware.scm (make-arm-trusted-firmware)[native-inputs]: Remove
labels.
 2022-01-18 19:35:54 +01:00
Marius Bakke
0c469c041e
gnu: Add arm-trusted-firmware-imx8mq. 
* gnu/packages/firmware.scm (arm-trusted-firmware-imx8mq): New public variable.
 2022-01-18 19:35:54 +01:00
Marius Bakke
0c727de7cc
gnu: arm-trusted-firmware: Use the default compiler. 
* gnu/packages/firmware.scm (make-arm-trusted-firmware)[native-inputs]: Remove
GCC-9.
 2022-01-18 19:35:54 +01:00
Marius Bakke
93006e5507
gnu: Adjust merge resolution. 
Commit 276f40fdc3 added unnecessary changes to
these variables.

* gnu/packages/openstack.scm (python-os-testr)[propagated-inputs]: Remove
everything except PYTHON-STESTR.
[native-inputs]: Add PYTHON-BABEL, PYTHON-TESTREPOSITORY and PYTHON-TESTTOOLS.
* gnu/packages/python-xyz.scm (python-platformdirs)[arguments]: Remove
obsolete phase.  Run pytest verbosely.
[native-inputs]: Remove PYTHON-PYTEST-COV.
 2022-01-18 19:35:54 +01:00
Guillaume Le Vaillant
1bd250783d
gnu: gqrx: Update to 2.15.4. 
* gnu/packages/radio.scm (gqrx): Update to 2.15.4.
 2022-01-18 19:29:53 +01:00
Ludovic Courtès
775203e520
gnu: papi: Update to 6.0.0. 
* gnu/packages/profiling.scm (papi): Update to 6.0.0.
[source]: Add 'modules' and 'snippet'.
[inputs]: Add LIBPFM4.
[native-inputs]: Remove AUTOCONF.
[arguments]: Use gexps.  Pass "--with-shlib-tools" and
"--with-pfm-prefix=".  Remove 'autoconf', 'patch-components', and
'components' phases.  Add 'change-directory' phase.  Adjust file name in
'extra-doc' phase'.
 2022-01-18 18:46:51 +01:00
Ludovic Courtès
895c1c20bf
gnu: papi: Add 'release-monitoring-url' property. 
* gnu/packages/profiling.scm (papi)[properties]: New field.
 2022-01-18 18:46:51 +01:00
Maxim Cournoyer
6edcf688c0
gnu: gnome-control-center: Update to 41.2. 
* gnu/packages/patches/gnome-control-center-libexecdir.patch: Add patch.
* gnu/local.mk (dist_patch_DATA): Register it.
* gnu/packages/gnome.scm (gnome-control-center): Update to 41.2.
[source]: Apply patch.
[phases]{no-polkit-magic}: New phase.
[native-inputs]: Use new style.  Add python.
[propagated-inputs]: Use new style.  Replace gdk-pixbuf by librsvg.
 2022-01-18 12:33:22 -05:00
Maxim Cournoyer
2784ba2fe8
gnu: gnome-boxes: Add python to native inputs. 
* gnu/packages/gnome.scm (gnome-boxes)[native-inputs]: Use new style and add
python.
[inputs]: Use new style.
 2022-01-18 11:19:32 -05:00
Maxim Cournoyer
1995920f68
gnu: folks: Add python to native inputs. 
Reported by ekaitz on #guix.

* gnu/packages/gnome.scm (folks): Delete trailing #t.
[native-inputs]: Use new style.  Add python.
 2022-01-18 10:47:44 -05:00
Maxim Cournoyer
719deaa881
gnu: python-dbusmock: Update to 0.25.0 and reap terminated processes. 
It was reported by abrenon and zimoun in #guix that python-dbusmock would fail
to build on their systems.

* gnu/packages/python-xyz.scm (python-dbusmock)
[imported-modules, modules]: New arguments.
[native-inputs]: Use new style.
[phases]{check}: Override phase to run it via a dumb init that can handle
signals and reap dead processes correctly.  This prevents test suite failures
in some cases (though it is still unknown why it was working on some systems
and not on others before the change).
 2022-01-18 10:10:27 -05:00
Mathieu Othacehe
5ed33b0d05
gnu: vte: Fix build. 
* gnu/packages/gnome.scm (vte)[native-inputs]: Add python.
 2022-01-18 14:27:52 +01:00
Lars-Dominik Braun
42f7d0d94c
gnu: python-jose: Update to 3.3.0. 
Failed due to upgrade of python-ecdsa in commit
8f73537f7961e93cce0c0457c9f762ff1f1770cb.

* gnu/packages/python-web.scm (python-jose): Update to 3.3.0.
 2022-01-18 14:19:43 +01:00
Lars-Dominik Braun
81d872543c
gnu: python-esptool-3.0: Add missing dependencies. 
Fixes: <https://issues.guix.gnu.org/52988>

* gnu/packages/engineering.scm (python-esptool-3.0)[propagated-inputs]:
Add python-reedsolo, python-cryptography and python-bitstring.
 2022-01-18 14:19:42 +01:00
Lars-Dominik Braun
241a9c51a3
gnu: python-ecdsa: Update to 0.17.0. 
Required by python-esptool.

* gnu/packages/python-crypto.scm (python-ecdsa): Update to 0.17.0.
[arguments]: Ignore failing test.
 2022-01-18 14:19:42 +01:00
Lars-Dominik Braun
80db7ab65b
gnu: Add python-reedsolo. 
Missing dependency of python-esptool.

* gnu/packages/python-xyz.scm (python-reedsolo): New variable.
 2022-01-18 14:19:42 +01:00
Nicolas Goaziou
9350538558
gnu: emacs-xclip: Update to 1.11. 
* gnu/packages/emacs-xyz.scm (emacs-xclip): Update to 1.11.
[source]: Use ".tar" extension.
 2022-01-18 13:22:41 +01:00
Nicolas Goaziou
f92d758f1d
gnu: gmni: Update to 1.0. 
* gnu/packages/web-browsers.scm (gmni): Update to 1.0.
[arguments]<#:make-flags>: Use G-expressions.
[inputs]: Replace openssl with bearssl.
 2022-01-18 10:56:04 +01:00
Nicolas Goaziou
f73c2aba1c
gnu: Add bearssl. 
* gnu/packages/tls.scm (bearssl): New variable.
 2022-01-18 10:55:29 +01:00
Nicolas Goaziou
61482a473a
gnu: lagrange: Update to 1.10.0. 
* gnu/packages/web-browsers.scm (lagrange): Update to 1.10.0.
 2022-01-18 09:11:21 +01:00
Nicolas Goaziou
b9020b9b7f
gnu: emacs-svg-lib: Update to 0.2.5. 
* gnu/packages/emacs-xyz.scm (emacs-svg-lib): Update to 0.2.5.
 2022-01-18 09:08:39 +01:00
Nicolas Goaziou
3c145f2ff1
gnu: emacs-xr: Update to 1.22. 
* gnu/packages/emacs-xyz.scm (emacs-xr): Update to 1.22.
 2022-01-18 09:05:06 +01:00
Brice Waegeneire
39510d5a5e
gnu: trash-cli: Update to 0.21.10.24. 
* gnu/packages/shellutils.scm (trash-cli): Update to 0.21.10.24.
  [source]: Use github repository instead of pypi.
  [arguments]<python>: Use python 3.
  <tests>: Enable tests.
  <phases>: Add "fix-setup.py" phase.
  [native-inputs]: Add python-pytest, python-mock and python-six.
  [propagated-inputs]: Add python-psutil.
 2022-01-18 08:55:07 +01:00
Maxim Cournoyer
87fe15c519
gnu: igraph: Update to 0.9.9. 
* gnu/packages/graph.scm (igraph): Update to 0.9.9.
 2022-01-18 01:18:13 -05:00
Maxim Cournoyer
5f110be220
gnu: igraph: Update to 0.9.6. 
* gnu/packages/graph.scm (igraph): Update to 0.9.6.
[snippet]: Simplify source snippet a bit, leveraging the new support for
using an external plfit library.
 2022-01-18 01:15:57 -05:00
Maxim Cournoyer
1ebc9e8823
Revert "gnu: python-aiohttp: Skip the tests." 
This reverts commit 2cac7d328a.  The test suite
passes after the package update of e40dfcfcb1.
 2022-01-18 00:25:56 -05:00
Maxim Cournoyer
d849be7b5f
gnu: python-black: Relax tomli version requirement. 
* gnu/packages/python-xyz.scm (python-black)
[phases]{relax-version-requirements}: New phase.
 2022-01-17 22:24:04 -05:00
Maxim Cournoyer
e40dfcfcb1
gnu: python-aiohttp: Update to 3.8.1. 
* gnu/packages/check.scm (python-pytest-6.1): Delete package.
* gnu/packages/python-web.scm (python-aiohttp): Update to 3.8.1.
[source]: Adjust snippet and comment it out with a TODO comment.
[phases]{cythonize}: Fix indentation.
{check}: Use 'when' for the TESTS? condition.
Delete the test_proxy_functional.py test file.
Skip tests requiring networking.  Run tests in parallel with xdist.
[propagated-inputs]: Add python-aiosignal.  Remove python-attrs.
{python-chardet}: Replace by...
{python-charset-normalizer}: ... this.
Add python-frozenlist.
[native-inputs]: Use the regular python-pytest package.
Add python-pytest-xdist.
 2022-01-17 22:24:04 -05:00
Maxim Cournoyer
f91d1c3019
gnu: python-async-timeout: Update to 4.0.2. 
* gnu/packages/python-xyz.scm (python-async-timeout): Update to 4.0.2.
[home-page]: Remove trailing / to please 'guix lint'.
 2022-01-17 22:24:03 -05:00
Maxim Cournoyer
2bf53290df
gnu: Add python-aiosignal. 
* gnu/packages/python-web.scm (python-aiosignal): New variable.
 2022-01-17 22:24:03 -05:00
Maxim Cournoyer
dece47497c
gnu: Add python-frozenlist. 
* gnu/packages/python-web.scm (python-frozenlist): New variable.
 2022-01-17 22:24:03 -05:00
Leo Famulari
2cac7d328a
gnu: python-aiohttp: Skip the tests. 
The test suite is failing because it fails to handle a deprecation
warning. Just skip it for now.

* gnu/packages/python-web.scm (python-aiohttp)[arguments]: Skip the test suite.
 2022-01-17 19:40:45 -05:00
Nicolas Goaziou
b4dd92d38a
gnu: easyrpg-player: Update to 0.7.0. 
* gnu/packages/easyrpg.scm (easyrpg-player): Update to 0.7.0.
[inputs]: Add fluidsynth, fmt.
 2022-01-18 01:14:15 +01:00
Nicolas Goaziou
7c80c0dd08
gnu: liblcf: Update to 0.7.0. 
* gnu/packages/easyrpg.scm (liblcf): Update to 0.7.0.
 2022-01-18 01:14:15 +01:00
Leo Famulari
65b2b14235
gnu: shotwell: Add python to native inputs. 
Since commit 5d20d7e1369fc7d93de19c0bd219937d697ceae6, meson no longer
propagates Python.

* gnu/packages/gnome.scm (shotwell)[native-inputs]: Add python.
 2022-01-17 19:06:26 -05:00
Tobias Geerinckx-Rice
5adec4cc05
gnu: mtools: Update to 4.0.37. 
* gnu/packages/mtools.scm (mtools): Update to 4.0.37.
 2022-01-16 01:00:00 +01:00
Tobias Geerinckx-Rice
ab5d31c53e
gnu: freedroidrpg: Fix build with GCC 10. 
* gnu/packages/games.scm (freedroidrpg)[arguments]: Add ‘-fcommon’
to #:configure-flags' CFLAGS.
 2022-01-16 01:00:00 +01:00
Leo Famulari
10be314cd8
gnu: pitivi: Add python to native-inputs. 
Since commit 5d20d7e1369fc7d93de19c0bd219937d697ceae6, meson no longer
propagates Python.

* gnu/packages/video.scm (pitivi)[native-inputs]: Add python.
 2022-01-17 18:59:40 -05:00
Leo Famulari
3cf59e02e7
gnu: Blanket: Add python to native-inputs. 
Since commit 5d20d7e1369fc7d93de19c0bd219937d697ceae6, meson no longer
propagates Python.

* gnu/packages/task-management.scm (blanket)[native-inputs]: Add python.
 2022-01-17 18:59:39 -05:00
Nicolas Goaziou
812ac22560
gnu: snap: Remove inputs labels. 
* gnu/packages/education.scm (snap)[inputs]: Remove labels.
 2022-01-18 00:30:15 +01:00
Nicolas Goaziou
67521ab4a1
gnu: snap: Update to 7.0.5. 
* gnu/packages/education.scm (snap): Update to 7.0.5.
 2022-01-18 00:29:44 +01:00
Brice Waegeneire
31577d879d
gnu: deluge: Add explanation about wrap phase. 
* gnu/packages/bittorrent.scm (deluge)[arguments]: Add comment
  explaining the filtering of "librsvg" from the wrapper.
 2022-01-17 22:50:55 +01:00
Brice Waegeneire
bb5f8a3b5e
gnu: deluge: Adjust style. 
* gnu/packages/bittorrent.scm (deluge)[inputs]: Add bash-minimal.
  [propagated-inputs]: Remove lablels.
 2022-01-17 22:50:50 +01:00
Brice Waegeneire
1b13c71ad1
gnu: deluge: Update to 2.0.5. 
* gnu/packages/bittorrent.scm (deluge): Update to 2.0.5.
  [arguments]: Remove 'fix-gettext-warning' phase.
 2022-01-17 22:50:45 +01:00
Leo Famulari
fc31774747
gnu: cryptsetup: Update to 2.3.7 [fixes CVE-2021-4122]. 
* gnu/packages/cryptsetup.scm (cryptsetup): Update to 2.3.7.
 2022-01-17 15:47:21 -05:00
Leo Famulari
2c7f2b40e2
gnu: linux-libre-lts: Update to 5.15. 
5.15 is the newest long-term support version of the kernel.

* gnu/packages/linux.scm (linux-libre-lts-version, linux-libre-lts-gnu-revision,
linux-libre-lts-pristine-source, linux-libre-lts-source, linux-libre-lts): Use
linux-libre-5.15.
 2022-01-17 15:43:41 -05:00
Leo Famulari
601c30e32f
gnu: linux-libre 5.4: Update to 5.4.172. 
* gnu/packages/linux.scm (linux-libre-5.4-version): Update to 5.4.172.
(linux-libre-5.4-pristine-source): Update hash.
 2022-01-17 15:43:41 -05:00
Leo Famulari
71c287392b
gnu: linux-libre 5.10: Update to 5.10.92. 
* gnu/packages/linux.scm (linux-libre-5.10-version): Update to 5.10.92.
(linux-libre-5.10-pristine-source): Update hash.
 2022-01-17 15:43:41 -05:00
Leo Famulari
a62a05cee5
gnu: linux-libre: Update to 5.15.15. 
* gnu/packages/linux.scm (linux-libre-5.15-version): Update to 5.15.15.
(linux-libre-5.15-pristine-source): Update hash.
 2022-01-17 15:43:31 -05:00
Maxim Cournoyer
e43b27d5bc
gnu: efl: Add python to native inputs. 
* gnu/packages/enlightenment.scm (efl)[native-inputs]: Add python.
 2022-01-17 14:49:38 -05:00
Maxim Cournoyer
36f6188fc4
gnu: python-pystache: Update to 0.6.0. 
* gnu/packages/python-xyz.scm (python-pystache): Update to 0.6.0.
 2022-01-17 14:40:13 -05:00
John Kehayias
5387a9c00e
gnu: Add xmonad-next and ghc-xmonad-contrib-next. 
Fixes: <https://issues.guix.gnu.org/issue/52784>.

* gnu/packages/wm.scm (xmonad-next): New variable. Compared to xmonad: Update
to 0.17.0.
[inputs]: Add GHC-DATA-DEFAULT-CLASS, remove GHC-EXTENSIBLE-EXCEPTIONS,
GHC-DATA-DEFAULT, GHC-SEMIGROUPS, and GHC-UTF8-STRING.
[native-inputs]: Add GHC-QUICKCHECK and GHC-QUICKCHECK-CLASSES.
(ghc-xmonad-contrib-next): New variable. Compared to ghc-xmonad-contrib:
Update to 0.17.0.
[propagated-inputs]: Remove GHC-OLD-TIME, GHC-EXTENSIBLE-EXCEPTIONS,
GHC-SEMIGROUPS.
[native-inputs]: Add GHC-QUICKCHECK and GHC-HSPEC.
(xmonad): Inherit from xmonad-next.
(ghc-xmonad-contrib): Inherit from ghc-xmonad-contrib-next.
* gnu/packages/patches/xmonad-next-dynamic-linking.patch: New patch. Update of
xmonad-dynamic-linking.patch to apply to xmonad-next.
* gnu/local.mk: Add it.

Signed-off-by: Lars-Dominik Braun <lars@6xq.net>
 2022-01-17 20:29:39 +01:00
John Kehayias via Guix-patches via
723aa8b391
gnu: xmobar: Update to 0.40. 
* gnu/packages/wm.scm (xmobar): Update to 0.40.

Signed-off-by: Lars-Dominik Braun <lars@6xq.net>
 2022-01-17 20:29:39 +01:00
John Kehayias via Guix-patches via
c1c2171158
gnu: Add ghc-quickcheck-classes. 
* gnu/packages/haskell-check.scm (ghc-quickcheck-classes): New variable.

Signed-off-by: Lars-Dominik Braun <lars@6xq.net>
 2022-01-17 20:29:39 +01:00
John Kehayias via Guix-patches via
67e3de56ec
gnu: Add ghc-semirings. 
* gnu/packages/haskell-xyz.scm (ghc-semirings): New variable.

Signed-off-by: Lars-Dominik Braun <lars@6xq.net>
 2022-01-17 20:29:39 +01:00
John Kehayias via Guix-patches via
dc28f4ef85
gnu: Add ghc-primitive-addr. 
* gnu/packages/haskell-xyz.scm (ghc-primitive-addr): New variable.

Signed-off-by: Lars-Dominik Braun <lars@6xq.net>
 2022-01-17 20:29:39 +01:00
Leo Famulari
eb8eb60eef
gnu: Epiphany: Use the correct hash for Epiphany 41.2. 
This hash was updated correctly in commit
291c4fa0ba, but presumably the merge
resolution of the version-1.4.0 gave us the wrong hash.

* gnu/packages/gnome.scm (epiphany)[source]: Use the hash of Epiphany 41.2.
 2022-01-17 14:09:06 -05:00
Ludovic Courtès
3f536e01c1
gnu: mpich: Remove input labels and trailing #t in phases. 
* gnu/packages/mpi.scm (mpich)[inputs]: Remove labels.
[arguments]: Remove trailing #t from phases.
 2022-01-17 19:05:48 +01:00
Ludovic Courtès
7bf85e63c1
gnu: mpich: Allow compilation with GCC 10. 
Fixes <https://issues.guix.gnu.org/53320>
Reported by Clément Barthelemy <clement.barthelemy@inria.fr>.

* gnu/packages/mpi.scm (mpich)[arguments]: Add 'define-gfortran-wrapper'
phase.
 2022-01-17 19:05:48 +01:00
Efraim Flashner
eb614420f6
gnu: rust-cfg-expr-0.8: Combine the two definitions. 
* gnu/packages/crates-io.scm (rust-cfg-expr-0.8): Remove duplicate
package definition.
[arguments]: Don't skip tests. Add rust-difference-2 to
cargo-development-inputs.
 2022-01-17 19:48:29 +02:00
Marius Bakke
df78a83a70
gnu: libvpx: Update to 1.11.0. 
* gnu/packages/video.scm (libvpx): Update to 1.11.0.
 2022-01-17 18:23:14 +01:00
Marius Bakke
bba32b9d31
gnu: python-sphinxcontrib-svg2pdfconverter: Update to 1.2.0. 
* gnu/packages/sphinx.scm (python-sphinxcontrib-svg2pdfconverter): Update to
1.2.0.
[arguments]: New field.
 2022-01-17 18:23:14 +01:00
Marius Bakke
c7dd51dd61
gnu: mame: Fix build failure. 
* gnu/packages/emulators.scm (mame)[arguments]: Fix typo in input name.
 2022-01-17 18:23:14 +01:00
Marius Bakke
f3b73e46df
gnu: ungoogled-chromium: Use bundled libvpx for WebRTC. 
Fixes <https://bugs.gnu.org/53301>.
Reported by Yasuaki Kudo <yasu@yasuaki.com>.

* gnu/packages/chromium.scm (ungoogled-chromium)[arguments]: Set
rtc_build_libvpx=true in #:configure-flags.
 2022-01-17 18:23:14 +01:00
Marius Bakke
9070dc562e
Revert "gnu: password-store: Fix failing test suite." 
This reverts commit a40ac62715.
 2022-01-17 18:23:14 +01:00
Marius Bakke
5da4cbfbd9
gnu: password-store: Ensure compatibility with tree@2.0. 
Fixes <https://bugs.gnu.org/53238>, et.al.

* gnu/packages/patches/password-store-tree-compat.patch: New file.
* gnu/local.mk (dist_patch_DATA): Adjust accordingly.
* gnu/packages/password-utils.scm (password-store)[source](patches): New field.
 2022-01-17 18:23:13 +01:00
Maxim Cournoyer
d54c31923d
gnu: python-simpleeval: Update to 0.9.12. 
* gnu/packages/python-xyz.scm (python-simpleeval): Update to 0.9.12.
 2022-01-17 11:53:02 -05:00
Maxim Cournoyer
276f40fdc3
Merge branch 'version-1.4.0' 
With resolved conflicts in:
	gnu/packages/gnome.scm
	gnu/packages/openstack.scm
	gnu/packages/python-xyz.scm
 2022-01-17 11:47:09 -05:00
Taiju HIGASHI
b2f6b6f6b9
gnu: Add font-plemoljp. 
* gnu/packages/fonts.scm (font-plemoljp): New variable.

Signed-off-by: Nicolas Goaziou <mail@nicolasgoaziou.fr>
 2022-01-17 11:11:40 +01:00
Nicolas Goaziou
0dbfc16ee2
gnu: emacs-geiser-guile: Use G-expressions. 
* gnu/packages/emacs-xyz.scm (emacs-geiser-guile)[arguments]<#:include,
 2022-01-17 10:47:15 +01:00
Nicolas Goaziou
87ad668a51
gnu: emacs-ebuild-mode: Use G-expressions. 
* gnu/packages/emacs-xyz.scm (emacs-ebuild-mode)[arguments]<#:phases>: Use gexps.
 2022-01-17 10:40:50 +01:00
Nicolas Goaziou
83cdbcc940
gnu: emacs-ebuild-mode: Update to 1.55. 
* gnu/packages/emacs-xyz.scm (emacs-ebuild-mode): Update to 1.55.
 2022-01-17 10:39:53 +01:00
Tobias Geerinckx-Rice
487613deea
gnu: oil: Use G-expressions. 
* gnu/packages/shells.scm (oil)[arguments]:
Rewrite as G-expressions.
 2022-01-16 01:00:02 +01:00
Tobias Geerinckx-Rice
a2350a16dd
gnu: oil: Update to 0.9.6. 
* gnu/packages/shells.scm (oil): Update to 0.9.6.
 2022-01-16 01:00:02 +01:00
Tobias Geerinckx-Rice
b56a8afbf8
gnu: lxc: Use G-expressions. 
* gnu/packages/virtualization.scm (lxc)[arguments]:
Rewrite as G-expressions.
 2022-01-16 01:00:02 +01:00
Tobias Geerinckx-Rice
d6f890a471
gnu: lxd: Update to 4.22. 
* gnu/packages/virtualization.scm (lxd): Update to 4.22.
[arguments]: Don't explicitly return #t from phases.
 2022-01-16 01:00:02 +01:00
Tobias Geerinckx-Rice
2445f78085
gnu: lxcfs: Update to 4.0.11. 
* gnu/packages/virtualization.scm (lxcfs): Update to 4.0.11.
 2022-01-16 01:00:02 +01:00
Tobias Geerinckx-Rice
b88f20d9f5
gnu: lxc: Update to 4.0.11. 
* gnu/packages/virtualization.scm (lxc): Update to 4.0.11.
 2022-01-16 01:00:01 +01:00
Tobias Geerinckx-Rice
a3500a0a65
gnu: protozero: Update to 1.7.1. 
* gnu/packages/protobuf.scm (protozero): Update to 1.7.1.
 2022-01-16 01:00:01 +01:00
Tobias Geerinckx-Rice
abb7272af3
gnu: janet: Use G-expressions. 
* gnu/packages/lisp.scm (janet)[arguments]:
Rewrite as G-expressions.
 2022-01-16 01:00:01 +01:00
Tobias Geerinckx-Rice
38200e3652
gnu: janet: Update to 1.19.2. 
* gnu/packages/lisp.scm (janet): Update to 1.19.2.
 2022-01-16 01:00:01 +01:00
Tobias Geerinckx-Rice
5d2ba70a78
gnu: qtractor: Update to 0.9.25. 
* gnu/packages/music.scm (qtractor): Update to 0.9.25.
[build-system]: Replace GNU Autotools with CMake.
 2022-01-16 01:00:01 +01:00
Tobias Geerinckx-Rice
bba3e67e44
gnu: padthv1: Update to 0.9.24. 
* gnu/packages/music.scm (padthv1): Update to 0.9.24.
[build-system]: Replace GNU Autotools with CMake.
 2022-01-16 01:00:01 +01:00
Tobias Geerinckx-Rice
732fe221ff
gnu: samplv1: Update to 0.9.24. 
* gnu/packages/music.scm (samplv1): Update to 0.9.24.
[build-system]: Replace GNU Autotools with CMake.
 2022-01-16 01:00:01 +01:00
Tobias Geerinckx-Rice
36008f30e7
gnu: drumkv1: Update to 0.9.24. 
* gnu/packages/music.scm (drumkv1): Update to 0.9.24.
[build-system]: Replace GNU Autotools with CMake.
 2022-01-16 01:00:01 +01:00
Tobias Geerinckx-Rice
916982db09
gnu: synthv1: Update to 0.9.24. 
* gnu/packages/music.scm (synthv1): Update to 0.9.24.
[build-system]: Replace GNU Autotools with CMake.
 2022-01-16 01:00:01 +01:00
Tobias Geerinckx-Rice
60fd190ecc
gnu: amsynth: Update to 1.12.4. 
* gnu/packages/music.scm (amsynth): Update to 1.12.4.
 2022-01-16 01:00:00 +01:00
Tobias Geerinckx-Rice
1d6c3716ac
gnu: eog-plugins: Update to 3.26.8. 
* gnu/packages/gnome.scm (eog-plugins): Update to 3.26.8.
 2022-01-16 01:00:00 +01:00
Tobias Geerinckx-Rice
847bd37be7
gnu: nvme-cli: Use G-expressions. 
* gnu/packages/linux.scm (nvme-cli)[arguments]:
Rewrite as G-expressions.
 2022-01-16 01:00:00 +01:00
Tobias Geerinckx-Rice
a7fd4bb828
gnu: nvme-cli: Update to 1.16. 
* gnu/packages/linux.scm (nvme-cli): Update to 1.16.
 2022-01-16 01:00:00 +01:00
Tobias Geerinckx-Rice
eeb740d937
gnu: memcached: Update to 1.6.13. 
* gnu/packages/databases.scm (memcached): Update to 1.6.13.
 2022-01-16 01:00:00 +01:00
Tobias Geerinckx-Rice
501d26650f
gnu: mtr: Update to 0.95. 
* gnu/packages/networking.scm (mtr): Update to 0.95.
 2022-01-16 01:00:00 +01:00
Ricardo Wurmus
4acf325150
gnu: sambamba: Update to 0.8.2. 
* gnu/packages/bioinformatics.scm (sambamba): Update to 0.8.2.
[arguments]: Sett CC and D_LD in build phase.
[native-inputs]: Add ld-gold-wrapper and binutils-gold.
 2022-01-17 08:32:44 +01:00
Ricardo Wurmus
141adf4d13
gnu: Add r-leaflet-providers. 
* gnu/packages/cran.scm (r-leaflet-providers): New variable.
 2022-01-17 08:32:44 +01:00
Josselin Poiret via Guix-patches via
d669f24ee4
gnu: Add poweralertd 
* gnu/packages/freedesktop.scm (poweralertd): Add variable.

Signed-off-by: Nicolas Goaziou <mail@nicolasgoaziou.fr>
 2022-01-17 00:22:27 +01:00
Morgan Smith
863b7b7dd7
gnu: pantalaimon: Add needed inputs 
* gnu/packages/matrix.scm (pantalaimon)
<propagated-inputs>: Add python-dbus, python-notify2, python-pydbus, and
python-pygobject.
<arguments>: Run sanity-check phase.

Co-authored-by: Aleksandr Vityazev <avityazev@posteo.org>
Signed-off-by: Nicolas Goaziou <mail@nicolasgoaziou.fr>
 2022-01-17 00:18:23 +01:00
Morgan Smith
4527743f0a
gnu: Add python-pydbus. 
* gnu/packages/python-xyz.scm (python-pydbus): New variable.

Co-authored-by: Aleksandr Vityazev <avityazev@posteo.org>
Signed-off-by: Nicolas Goaziou <mail@nicolasgoaziou.fr>
 2022-01-17 00:18:22 +01:00
Morgan Smith
9c43164e3d
gnu: emacs-ement: Propagate inputs. 
* gnu/packages/emacs-xyz (emacs-ement) <inputs>: Change to propagated-inputs.

Signed-off-by: Nicolas Goaziou <mail@nicolasgoaziou.fr>
 2022-01-17 00:18:22 +01:00
Vinicius Monego
4af273e0a8
gnu: python-cftime: Update to 1.5.1.1. 
* gnu/packages/python-xyz.scm (python-cftime): Update to 1.5.1.1.
[native-inputs]: Add python-check-manifest, python-coverage, python-sphinx,
python-twine, python-wheel.
[home-page]: Use page linked in the GitHub repository.
[license]: Change to expat according to the GitHub repository.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
 2022-01-16 23:56:56 +01:00
Michael Rohleder
7a0fffc85f
gnu: ristretto: Update to 0.12.2. 
* gnu/packages/xfce.scm (ristretto): Update to 0.12.2.
[native-inputs]: Add glib:bin for gdbus-codegen.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
 2022-01-16 23:56:56 +01:00
Brandon Lucas
86e782e2b6
gnu: Add emacs-fennel-mode. 
* gnu/packages/emacs-xyz.scm (emacs-fennel-mode): New variable.

Signed-off-by: Nicolas Goaziou <mail@nicolasgoaziou.fr>
 2022-01-16 23:31:22 +01:00
Efraim Flashner
6ba510d76d
gnu: libtool: Skip the nopic tests on riscv. 
* gnu/packages/patches/libtool-skip-tests2.patch: Adjust to add riscv to
skipped nopic tests.
 2022-01-11 12:43:37 +02:00
Ricardo Wurmus
a46fac5635
gnu: texlive-luaotfload: Use new name for texlive-lualibs. 
* gnu/packages/tex.scm (texlive-luaotfload)[propagated-inputs]: Replace
texlive-luatex-lualibs with texlive-lualibs.
 2022-01-11 11:36:27 +01:00
Ricardo Wurmus
df77cd8968
gnu: texlive-bin: Link lualatex to luahbtex. 
Fixes <https://issues.guix.gnu.org/51252>.

* gnu/packages/tex.scm (texlive-bin)[arguments]: Link lualatex to luahbtex.
(texlive-latex-luatex): Remove variable.
 2022-01-11 10:18:54 +01:00
Ricardo Wurmus
4d2c861dfb
gnu: texlive-lualibs: Take sources from TeX Live SVN. 
* gnu/packages/tex.scm (texlive-luatex-lualibs): Deprecate this variable...
(texlive-lualibs): ...in favor of this new variable.
[source]: Take source code from TeX Live SVN because it must match the rest of
the LuaTeX distribution.
 2022-01-11 10:18:54 +01:00
Ricardo Wurmus
3189b1360c
gnu: texlive-luaotfload: Propagate texlive-lua-alt-getopt. 
* gnu/packages/tex.scm (texlive-luaotfload)[propagated-inputs]: Add
texlive-lua-alt-getopt.
 2022-01-11 10:18:54 +01:00
Ricardo Wurmus
3b864f72e3
gnu: Add texlive-lua-alt-getopt. 
* gnu/packages/tex.scm (texlive-lua-alt-getopt): New variable.
 2022-01-11 10:18:54 +01:00
Ricardo Wurmus
992b1efbd8
gnu: texlive-latex-base: Remove trailing #T. 
* gnu/packages/tex.scm (texlive-latex-base)[arguments]: Remove trailing #T
from build phases.
 2022-01-11 10:18:54 +01:00
Ricardo Wurmus
871504e5bf
gnu: texlive-kpathsea: Patch references to sed and awk. 
* gnu/packages/tex.scm (texlive-kpathsea)[arguments]: Add build phase
'patch-references to satisfy runtime requirements on sed and awk.
[inputs]: Add sed and gawk.
 2022-01-11 10:18:54 +01:00
Ricardo Wurmus
a6499572b3
gnu: texlive-bin: Patch references to sed and awk. 
* gnu/packages/tex.scm (texlive-bin)[arguments]: Patch texlive scripts in
'post-install phase to satisfy references to sed and awk.
 2022-01-11 10:18:54 +01:00
Ricardo Wurmus
2a5ed25c41
gnu: texlive-bin: Fix directory traversal. 
Fixes <https://bugs.gnu.org/52979>.

* gnu/packages/tex.scm (texlive-bin)[arguments]: Add build phase
'patch-directory-traversal.
 2022-01-11 10:18:53 +01:00
Ricardo Wurmus
f5ef9ffd48
gnu: texlive-bin: Remove trailing #T. 
* gnu/packages/tex.scm (texlive-bin)[source]: Simplify snippet.
[arguments]: Remove trailing #T from build phases.
 2022-01-11 10:18:49 +01:00
Maxim Cournoyer
b8a771d5a5
gnu: network-manager: Patch dlopen call to libjansson.so. 
* gnu/packages/gnome.scm (network-manager)[phases]
{patch-dlopen-call-to-libjansson}: New phase.
{pre-configure}: Reinstate an assertion in test-setting.c.
 2022-01-10 23:08:06 -05:00
Maxim Cournoyer
a02c1ce716
gnu: samba: Update to 4.15.3. 
* gnu/packages/samba.scm (samba): Update to 4.15.3.
[source]: Delete snippet; pyiso8601 is no longer bundled.
[arguments]: Adjust make-flags and arguments to use G-Exp.
[phases]{configure}: Add the '--with-system-mitkrb5', '--with-system-mitkdc'
and '--with-experimental-mit-ad-dc' configure flags.
[inputs]: Replace heimdal with mit-krb5.
[native-inputs]: Use new style.
{python-cryptography, python-dnspython, python-markdown}
{python-pyasn1}: New inputs.
(samba/fixed): Update to 4.15.3 and hide package.
 2022-01-10 11:51:30 -05:00
Maxim Cournoyer
b6509548eb
gnu: nss: Update to 3.72. 
* gnu/packages/nss.scm (nss): Update to 3.72.
 2022-01-10 11:51:30 -05:00
Maxim Cournoyer
fa8fb40f6b
gnu: iwd: Update to 1.20. 
* gnu/packages/networking.scm (iwd): Update to 1.20.
 2022-01-10 11:51:30 -05:00
Maxim Cournoyer
423c3de0c8
gnu: ell: Update to 0.46. 
* gnu/packages/linux.scm (ell): Update to 0.46.
 2022-01-10 11:51:30 -05:00
Maxim Cournoyer
4cecce6960
gnu: rust: Do not generate doc. 
The share/doc directory weights 527 MiB and bundles fonts.

* gnu/packages/rust.scm (rust-1.57)[phases]{enable-docs}: Delete phase.
 2022-01-10 11:51:30 -05:00
Maxim Cournoyer
9495b7800b
gnu: rav1e: Update to 0.5.1; also update rust-aom-sys to 0.3.0. 
* gnu/packages/crates-graphics.scm (rust-aom-sys-0.2): Rename to...
(rust-aom-sys-0.3): ... this, updating to 0.3.0.
(rust-aom-sys-0.1): Delete unused variable.
* gnu/packages/video.scm (rav1e): Update to 0.5.1.
[cargo-test-flags]: New argument.
[cargo-inputs]: Add rust-aom-sys-0.3.
Update rust-arrayvec and rust-av-metrics to 0.7.
Update rust-rustc-version to 0.4.
Update rust-dav1d-sys to 0.3.4.
[cargo-development-inputs]: Update rust-assert-cmd to 2.
Update rust-pretty-assertions to 0.7.  Update rust-semver to 1.
[phases]{relax-versions}: New phase.
 2022-01-10 11:51:29 -05:00
Maxim Cournoyer
633733696c
gnu: rust-av-metrics: Update to 0.7.2. Also update rust-lab to 0.11.0. 
* gnu/packages/crates-io.scm (rust-lab-0.8): Update to 0.11.0, rename to...
(rust-lab-0.11): ... this.
[cargo-development-inputs]: Update rust-approx to 0.5, rust-pretty-assertions
to 0.7 and rust-rand to 0.8.
(rust-lab-0.7): Adjust accordingly.
(rust-lab-0.4): Inherit from rust-lab-0.7 and fix source field indentation.
(rust-av-metrics-0.6): Update to 0.7.2, renaming it to...
(rust-av-metrics-0.7): ... this.
[cargo-inputs]: Update rust-lab to 0.11.
[cargo-development-inputs]: Add rust-criterion-0.3 and rust-y4m-0.7.
 2022-01-10 11:51:29 -05:00
Maxim Cournoyer
6b610674d1
gnu: rust-v-frame-0.2: Update to 0.2.5. 
* gnu/packages/crates-io.scm (rust-v-frame-0.2): Update to 0.2.5.
[skip-build?]: Remove argument.
[cargo-inputs]: Add rust-rust-hawktracer-0.7 and rust-rayon-1.
 2022-01-10 11:51:29 -05:00
Maxim Cournoyer
34fb1c4ba9
gnu: Add rust-rustc-version-0.4. 
* gnu/packages/crates-io.scm (rust-rustc-version-0.4): New variable.
(rust-rustc-version-0.3): Inherit from the above.
 2022-01-10 11:50:50 -05:00
Maxim Cournoyer
9f3ed4d57e
gnu: Add rust-concolor-control. 
* gnu/packages/crates-io.scm (rust-concolor-control): New variable.
 2022-01-10 11:49:13 -05:00
Maxim Cournoyer
330c3bee85
gnu: Add rust-concolor-query. 
* gnu/packages/crates-io.scm (rust-concolor-query): New variable.
 2022-01-10 11:49:13 -05:00
Maxim Cournoyer
8169079a5a
gnu: Add rust-cfg-expr-0.8. 
* gnu/packages/crates-io.scm (rust-cfg-expr-0.8): New variable.
 2022-01-10 11:49:12 -05:00
Maxim Cournoyer
cdb2b115a8
gnu: mozjs-78: Disable rust-simd to workaround a build failure. 
* gnu/packages/gnuzilla.scm (mozjs-78)
[configure-flags]: Disable rust-simd to avoid a build failure that occurs when
Rust is newer than 1.54.0.
 2022-01-10 11:47:04 -05:00
Hartmut Goebel
c3c943055d
build/python: Improve error output in sanity check. 
Instead of printing the "str()" representation of the excaption, print the
"repr()" representation. This will print the name of the exception and thus
ease understanding the actual error.

Signed-off-by: Maxim Cournoyer <maxim.cournoyer@gmail.com>
 2022-01-10 11:47:03 -05:00
Maxim Cournoyer
d90080db54
gnu: rust: Use rust-1.57.0. 
* gnu/packages/rust.scm (rust-1.54): Make it a private variable.  Move
definition to...
(rust-1.57): ... here.
(rust-1.55, rust-1.56): Make private.
* gnu/packages/shells.scm (nushell)[rust]: Remove argument.
 2022-01-10 11:47:03 -05:00
Maxim Cournoyer
c292cf21f7
gnu: simple-scan: Add python to native inputs. 
* gnu/packages/gnome.scm (simple-scan)[native-inputs]: Add python.
 2022-01-10 11:47:03 -05:00
Maxim Cournoyer
f353ed53a9
gnu: gnome-calculator: Add python to native inputs. 
* gnu/packages/gnome.scm (gnome-calculator)[native-inputs]: Add python.
 2022-01-10 11:47:03 -05:00
Maxim Cournoyer
32d38a7142
gnu: gnome-screenshot: Add python to native inputs. 
* gnu/packages/gnome.scm (gnome-screenshot)[native-inputs]: Add python.
 2022-01-10 11:47:03 -05:00
Maxim Cournoyer
ff9c684ddf
gnu: file-roller: Add python to native inputs. 
* gnu/packages/gnome.scm (file-roller)[native-inputs]: Add python.
 2022-01-10 11:47:02 -05:00
Maxim Cournoyer
836daaf8f6
gnu: python-pandas: Update to 1.3.5. 
* gnu/packages/python-science.scm (python-pandas): Update to 1.3.5.
[phases]{check}: Add a reference to the network accessing tests issue, now
reported upstream.  Reinstate the excelwriter tests.
[propagated-inputs]: Add python-xlsxwriter.
[native-inputs]: Remove python-nose.
 2022-01-10 11:47:02 -05:00
Maxim Cournoyer
b92d09cda1
gnu: python-xlwt: Add comment about maintainership of the package. 
The package appears to be abandoned.

* gnu/packages/python-xyz.scm (python-xlwt): Add comment.
 2022-01-10 11:47:02 -05:00
Maxim Cournoyer
00bad443ef
gnu: python-openpyxl: Update to 3.0.9. 
* gnu/packages/python-xyz.scm (python-openpyxl): Update to 3.0.9.
 2022-01-10 11:47:01 -05:00
Maxim Cournoyer
0c83eca719
gnu: python-xlrd: Update to 2.0.1. 
* gnu/packages/python-xyz.scm (python-xlrd): Update to 2.0.1.
[source]: Use git-fetch.
[arguments]: Delete field.
[native-inputs]: Add python-pytest.
 2022-01-10 11:47:01 -05:00
Maxim Cournoyer
48baca342d
gnu: mutter: Add python to native inputs. 
* gnu/packages/gnome.scm (mutter)[native-inputs]: Add python.
 2022-01-10 11:47:01 -05:00
Maxim Cournoyer
ac1f60f4fe
gnu: libgweather: Add python to native inputs. 
* gnu/packages/gnome.scm (libgweather)[native-inputs]: Add python.
 2022-01-10 11:47:01 -05:00
Maxim Cournoyer
235a083103
gnu: baobab: Add python to native inputs. 
* gnu/packages/gnome.scm (baobab)[native-inputs]: Add python.
 2022-01-10 11:47:00 -05:00
Maxim Cournoyer
c1482ef315
gnu: python-pytest-timeout: Update to 2.0.2. 
* gnu/packages/check.scm (python-pytest-timeout): Update to 2.0.2.
 2022-01-10 11:47:00 -05:00
Leo Famulari
8636d02955
gnu: binutils: Fix CVE-2021-45078. 
This is for the release branch.

Should we also use a graft for the master branch? It would be even
better if we could add a binutils-next package that users could install,
in my opinion.

* gnu/packages/patches/binutils-CVE-2021-45078.patch: New file.
* gnu/local.mk (dist_patch_DATA): Add it.
* gnu/packages/base.scm (binutils)[source]: Use it.

Signed-off-by: Maxim Cournoyer <maxim.cournoyer@gmail.com>
 2022-01-10 11:46:57 -05:00
Maxim Cournoyer
db912d77a8
gnu: glib: Update to 2.70.2. 
* gnu/packages/glib.scm (glib): Update to 2.70.2.
 2022-01-10 11:44:52 -05:00
Maxim Cournoyer
ec26595e30
gnu: meson: Update to 0.60.3. 
* gnu/packages/build-tools.scm (gn): Update to 0.60.3.
 2022-01-10 11:44:52 -05:00
Maxim Cournoyer
abb5a92cbc
gnu: glibmm: Update to 2.70.0 and apply guix style. 
* gnu/packages/glib.scm (glibmm): Update to 2.70.0.
[native-inputs]: Use new style.
 2022-01-10 11:44:51 -05:00
Sarah Morgensen
64f7e53a5d
gnu: cpuid: Remove obsolete file permissions change. 
* gnu/packages/linux.scm (cpuid)[arguments]<#:phases>{fix-makefile}:
Remove Makefile gzip permissions patch.

Signed-off-by: Maxim Cournoyer <maxim.cournoyer@gmail.com>
 2022-01-10 11:44:51 -05:00
Sarah Morgensen
27cc25e1a4
gnu: pre-commit: Remove obsolete phase. 
* gnu/packages/version-control.scm (pre-commit)[arguments]<#:phases>:
Remove 'make-gz-writable phase.

Signed-off-by: Maxim Cournoyer <maxim.cournoyer@gmail.com>
 2022-01-10 11:44:51 -05:00
Sarah Morgensen
95cb49b475
gnu: go-github-com-prometheus-common: Remove obsolete phase. 
* gnu/packages/syncthing.scm (go-github-com-prometheus-common)
[arguments]<#:phases>: Remove 'make-gzip-archive-writable phase.

Signed-off-by: Maxim Cournoyer <maxim.cournoyer@gmail.com>
 2022-01-10 11:44:51 -05:00
Sarah Morgensen
fa7b52ff57
gnu: python-pdfminer-six: Remove obsolete phase. 
* gnu/packages/python-xyz.scm (python-pdfminer-six)[arguments]
<#:phases>: Remove 'make-files-writable phase.

Signed-off-by: Maxim Cournoyer <maxim.cournoyer@gmail.com>
 2022-01-10 11:44:50 -05:00
Sarah Morgensen
a97d659e13
gnu: arcanist: Remove obsolete phase. 
* gnu/packages/phabricator.scm (arcanist)[arguments]<#:phases>: Remove
'make-compressed-files-writable phase.

Signed-off-by: Maxim Cournoyer <maxim.cournoyer@gmail.com>
 2022-01-10 11:44:50 -05:00
Sarah Morgensen
b623ee2fb6
gnu: helm: Remove obsolete phase. 
* gnu/packages/music.scm (helm)[arguments]<#:phases>: Remove
'make-gz-files-writable phase.

Signed-off-by: Maxim Cournoyer <maxim.cournoyer@gmail.com>
 2022-01-10 11:44:50 -05:00
Sarah Morgensen
9d55296898
gnu: lmms: Remove obsolete phase. 
* gnu/packages/music.scm (lmms)[arguments]<#:phases>: Remove
'make-manpages-writable phase.

Signed-off-by: Maxim Cournoyer <maxim.cournoyer@gmail.com>
 2022-01-10 11:44:50 -05:00
Sarah Morgensen
f7d4bf6205
gnu: jalv-select: Remove obsolete phase. 
* gnu/packages/music.scm (jalv-select)[arguments]<#:phases>: Remove
'make-manpages-writable phase.

Signed-off-by: Maxim Cournoyer <maxim.cournoyer@gmail.com>
 2022-01-10 11:44:50 -05:00
Sarah Morgensen
18e872b805
gnu: python-scikit-learn: Remove obsolete phase. 
* gnu/packages/machine-learning.scm (python-scikit-learn)[arguments]
<#:phases>: Remove 'make-files-writable phase.

Signed-off-by: Maxim Cournoyer <maxim.cournoyer@gmail.com>
 2022-01-10 11:44:49 -05:00
Sarah Morgensen
b67d82972e
gnu: go-ipfs: Remove obsolete phase. 
* gnu/packages/ipfs.scm (go-ipfs)[arguments]<#:phases>: Remove
'make-files-writable phase.

Signed-off-by: Maxim Cournoyer <maxim.cournoyer@gmail.com>
 2022-01-10 11:44:49 -05:00
Sarah Morgensen
1ba19f4bf1
gnu: python-plotly: Remove obsolete phase. 
* gnu/packages/graph.scm (python-plotly)[arguments]<#:phases>: Remove
'make-files-writable phase.

Signed-off-by: Maxim Cournoyer <maxim.cournoyer@gmail.com>
 2022-01-10 11:44:49 -05:00
Sarah Morgensen
21566bfd49
gnu: go-github-com-gdamore-tcell: Remove obsolete phase. 
* gnu/packages/golang.scm (go-github-com-gdamore-tcell)[arguments]
<#:phases>: Remove 'make-files-writable phase.

Signed-off-by: Maxim Cournoyer <maxim.cournoyer@gmail.com>
 2022-01-10 11:44:49 -05:00
Sarah Morgensen
8347c49e56
gnu: go-github-com-docker-distribution: Remove obsolete phase. 
* gnu/packages/golang.scm (go-github-com-docker-distribution)[arguments]
<#:phases>: Remove 'make-gzip-archive-writable phase.

Signed-off-by: Maxim Cournoyer <maxim.cournoyer@gmail.com>
 2022-01-10 11:44:49 -05:00
Sarah Morgensen
37f6126f9f
gnu: go-golang-org-x-crypto: Remove obsolete phase. 
* gnu/packages/golang.scm (go-golang-org-x-crypto)[arguments]<#:phases>:
Remove 'make-gzip-archive-writable phase.

Signed-off-by: Maxim Cournoyer <maxim.cournoyer@gmail.com>
 2022-01-10 11:44:48 -05:00
Sarah Morgensen
e0940ed843
gnu: po4a: Remove obsolete phase. 
* gnu/packages/gettext.scm (po4a)[arguments]<#:phases>: Remove 'make-compressed-files-writable phase.

Signed-off-by: Maxim Cournoyer <maxim.cournoyer@gmail.com>
 2022-01-10 11:44:48 -05:00
Sarah Morgensen
6dc8a61bb1
gnu: emacs: Remove obsolete phase. 
* gnu/packages/emacs.scm (emacs)[arguments]<#:phases>: Remove
'make-compressed-files-writable phase.

Signed-off-by: Maxim Cournoyer <maxim.cournoyer@gmail.com>
 2022-01-10 11:44:48 -05:00
Sarah Morgensen
0d04504362
gnu: cups-minimal: Remove obsolete phase. 
* gnu/packages/cups.scm (cups-minimal)[arguments]<#:phases>: Remove
'make-manpages-writable phase.

Signed-off-by: Maxim Cournoyer <maxim.cournoyer@gmail.com>
 2022-01-10 11:44:48 -05:00
Sarah Morgensen
b9e703da9d
gnu: clipper: Remove obsolete phase. 
* gnu/packages/bioinformatics.scm (clipper)[arguments]<#:phases>: Remove
'make-files-writable phase.

Signed-off-by: Maxim Cournoyer <maxim.cournoyer@gmail.com>
 2022-01-10 11:44:48 -05:00
Sarah Morgensen
85e43978a4
gnu: python-biom-format: Remove obsolete phase. 
* gnu/packages/bioinformatics.scm (python-biom-format)[arguments]
<#:phases>: Remove 'make-files-writable phase.

Signed-off-by: Maxim Cournoyer <maxim.cournoyer@gmail.com>
 2022-01-10 11:44:47 -05:00
Maxim Cournoyer
c61e742854
gnu: tbb-2020: Use ld.gold to work around segfaults in check phase. 
* gnu/packages/tbb.scm (tbb-2020)
[configure-flags]: Use -fuse-ld=gold in CFLAGS.
[native-inputs]: Add ld-gold-wrapper.
 2022-01-10 11:44:47 -05:00
Maxim Cournoyer
5651e46983
gnu: python-igraph: Update to 0.9.8. 
* gnu/packages/graph.scm (python-igraph): Update to 0.9.8.
[origin]: Fetch from git.
[configure-flags]: Delete argument.
[phases]{build}: No longer override phase.
{check}: Preserve ordering and streamline.
{specify-libigraph-location}: New phase.
[native-inputs]: Remove pkg-config.
[home-page]: Update.
 2022-01-10 11:44:47 -05:00
Maxim Cournoyer
3c50cb75ee
gnu: igraph: Update to 0.9.5. 
* gnu/packages/graph.scm (igraph): Update to 0.9.5.
[source]: Add snippet to fully unbundle.
[build-system]: Use cmake-build-system.
[configure-flags]: Replace all by just '-DBUILD_SHARED_LIBS=ON'.
[native-inputs]: Add pkg-config.
[inputs]{zlib}: Delete input.
{arpack-ng, plfit, suitesparse}: New inputs.
 2022-01-10 11:44:47 -05:00
Maxim Cournoyer
36681885d4
gnu: Add plfit. 
* gnu/packages/graph.scm (plfit): New variable.
 2022-01-10 11:44:46 -05:00
Maxim Cournoyer
64dac22b17
gnu: python-pysam: Update to 0.18.0. 
* gnu/packages/bioinformatics.scm (python-pysam): Update to 0.18.0.
[source]: Add FIXME to clarify bundled libraries in use.
[phases]{check}: Streamline.
[propagated-inputs]: Use latest htslib (1.14).
[native-inputs]: Use latest samtools and bcftools (1.14).  Remove python-nose.
 2022-01-10 11:44:46 -05:00
Maxim Cournoyer
801d0ed622
gnu: bcftools: Update to 1.14. 
* gnu/packages/bioinformatics.scm (bcftools): Update to 1.14.
(bcftools-1.12): New variable.
(bcftools-1.10): Use package/inherit and delete trailing #t.
[name]: Delete field.
 2022-01-10 11:44:46 -05:00
Maxim Cournoyer
23fdb5a69c
gnu: samtools: Update to 1.14. 
* gnu/packages/bioinformatics.scm (samtools): Update to 1.14.
[modules]: Delete argument.
[phases]{install-library, install-headers}: Delete phases.  This version no
longer includes the legacy library (it links to htslib directly).
(samtools-1.12): New variable.
 2022-01-10 11:44:46 -05:00
Maxim Cournoyer
74af2dd148
gnu: htslib: Update to 1.14. 
* gnu/packages/bioinformatics.scm (htslib): Update to 1.14.
(htslib-1.12): New variable.
(htslib-1.10, htslib-1.9, htslib-1.3)
(htslib-for-samtools-1.2): Normalize style.
 2022-01-10 11:44:46 -05:00
Maxim Cournoyer
3c9a98bf34
gnu: python-beautifulsoup4: Update to 4.10.0. 
* gnu/packages/python-xyz.scm (python-beautifulsoup4): Update to 4.10.0.
[propagated-inputs]{python-html5lib, python-lxml}: New inputs.
[arguments]: Delete field.
(python2-beautifulsoup4): Peg at version 4.9.3.
 2022-01-10 11:44:45 -05:00
Maxim Cournoyer
01a01c88f8
gnu: poetry: Update to 1.1.12. 
* gnu/packages/python-xyz.scm (poetry): Update to 1.1.12.
[phases]{patch-setup-py}: Relax packaging version requirement.
[propagated-inputs]{python-msgpack-transitional}: Replace with...
{python-msgpack}: ... this.
{python-requests-toolbelt-0.9.1}: Replace with...
{python-requests-toolbelt}: ... this.
{python-msgpack-transitional}: Delete variable.
 2022-01-10 11:44:45 -05:00
Maxim Cournoyer
08769d0bce
gnu: python-requests-toolbelt: Update to 0.9.1 and enable tests. 
* gnu/packages/python-web.scm (pyhton-requests-toolbelt): Update to 0.9.1.
[phases]{delete-problematic-tests}: New phase.
(python-requests-toolbelt-0.9.1): Delete variable.
(python2-requests-toolbelt): Likewise.
(python-cloudscraper): Adjust accordingly.
 2022-01-10 11:44:45 -05:00
Maxim Cournoyer
f0be3ddadf
gnu: python-cachecontrol: Update to 0.12.10. 
* gnu/packages/python-web.scm (python-cachecontrol): Update to 0.12.10.
 2022-01-10 11:44:45 -05:00
Maxim Cournoyer
0be48040dc
gnu: python-os-testr: Propagate python-testtools and python-babel. 
Lack of python-testtools was causing the sanity-check phase to fail.

* gnu/packages/openstack.scm (python-os-testr)
[native-inputs]{python-testtools, python-babel}: Move to...
[propagated-inputs]: ... here.
 2022-01-10 11:44:44 -05:00
Maxim Cournoyer
7aa7d85bac
gnu: webkitgtk: Enable GStreamer GL support. 
* gnu/packages/webkit.scm (webkitgtk)[configure-flags]: Remove the
'-DUSE_GSTREAMER_GL=OFF' build option.
 2022-01-10 11:44:44 -05:00
Maxim Cournoyer
00e4bd2500
gnu: webkitgtk: Add a note about plugins in description. 
This is in response to <https://issues.guix.gnu.org/52375>.

* gnu/packages/webkit.scm (webkitgtk): Add a note about GStreamer plugins.

Reported-by: Jack Hill <jackhill@jackhill.us>
 2022-01-10 11:44:44 -05:00
Maxim Cournoyer
c704bdd95b
gnu: python2-matplotlib: Update to 2.2.5. 
* gnu/packages/python-xyz.scm (python2-matplotlib): Update to 2.2.5.
[phases]: Use G-exp.
{install-jquery-ui}: Delete phase.  JQuery is bundled in this release.
[native-inputs]: Remove all exception pkg-config.
[propagated-inputs]: Sort and explicitly specify all inputs to ease
maintenance.
 2022-01-10 11:44:44 -05:00
Maxim Cournoyer
ea0ed65c59
gnu: python-matplotlib: Update to 3.5.1 and run tests in parallel. 
* gnu/packages/python-xyz.scm (python-matplotlib): Update to 3.5.1.
[propagated-inputs]: Add python-fonttools, python-wxpython
and python-packaging.
[native-inputs]: Remove python-mock, python-wheel, unzip and jquery-ui.
Add python-pytest-timeout, python-pytest-xdist, python-setuptools-scm and
python-setuptools-scm-git-archive.
[phases]: Delete trailing #t.
{pretend-version}: New phase.
{install-jquery-ui}: Delete phase.
{check}: Honor TESTS?.  Do not skip webagg tests anymore.  Invoke using
'-n' argument to run tests in parallel via pytest-xdist.
{configure-environment}: Do not set LD_LIBRARY_PATH nor HOME.  Rename
setup.cfg to mplsetup.cfg.  Set the backend to Agg.
 2022-01-10 11:44:43 -05:00
Maxim Cournoyer
e5e533c221
gnu: python-fonttools: Update to 4.28.5. 
* gnu/packages/python-xyz.scm (python-fonttools): Update to 4.28.5 and hide
the package.
[properties]: New field.
(python-fonttools-with-tests): New variable.
 2022-01-10 11:44:43 -05:00
Maxim Cournoyer
b4e18112ef
gnu: Add python-zopfli. 
* gnu/packages/python-compression.scm (python-zopfli): New variable.
 2022-01-10 11:44:43 -05:00
Maxim Cournoyer
53d7e92e68
gnu: Add zopfli. 
* gnu/packages/compression.scm (zopfli): New variable.
 2022-01-10 11:44:43 -05:00
Maxim Cournoyer
b794dff00a
gnu: Add python-fs. 
* gnu/packages/python-xyz.scm (python-fs): New variable.
 2022-01-10 11:44:42 -05:00
Maxim Cournoyer
32f1ae3616
gnu: Add python-pyftpdlib. 
* gnu/packages/python-xyz.scm (python-pyftpdlib): New variable.
 2022-01-10 11:44:42 -05:00
Maxim Cournoyer
d07d0835a9
gnu: Add python-pysendfile. 
* gnu/packages/python-xyz.scm (python-pysendfile): New variable.
 2022-01-10 11:44:42 -05:00
Maxim Cournoyer
2fa2b91d59
gnu: python-pylint: Update to 2.12.2. 
* gnu/packages/check.scm (python-pylint): Update to 2.12.2.
[phases]{check}: Override phase.
[native-inputs]: Remove python-pytest-benchmark, python-pytest-runner.
[propagated-inputs]: Add python-platformdirs, python-typing-extensions.
[synopsis]: Streamline.
 2022-01-10 11:44:42 -05:00
Maxim Cournoyer
b9839ee1c5
gnu: python-platformdirs: Update to 2.4.0, run tests and fix metadata. 
* gnu/packages/python-xyz.scm (python-platformdirs): Update to 2.4.0.
[phases]{pretend-version}: New phase.
{check}: Override to run tests.
[native-inputs]{python-setuptools-scm}: New input.
 2022-01-10 11:44:41 -05:00
Maxim Cournoyer
5b218cc14a
gnu: python-flit: Update to 3.5.1, enable tests and apply guix style. 
* gnu/packages/python-xyz.scm (python-flit)[origin]: Fetch from pypi-uri, to
ease updating the package.
[phases]{bootstrap}: Delete phase.
{build, install}: Do a PEP 517 build using pypa-build.
{check}: New phase.
[tests?]: Enable.
[propagated-inputs]{python-pytoml, python-toml}: Remove.
{python-pypa-build, python-tomli-w, python-flit-core, python-requests}: New
inputs.
{python-docutils}: New input, moved from...
[native-inputs]: ... here.  Apply guix style.
{python-testpath}: Use the regular python-testpath package.
[synopsis, description]: Re-indent.
 2022-01-10 11:44:41 -05:00
Maxim Cournoyer
3307224bf9
gnu: python-testpath: Update to 0.5.0 and enable tests. 
* gnu/packages/check.scm (python-testpath): Update to 0.5.0.
[phases]{relax-requirements}: New phase
{build}: Build using pypa-build's 'build' command.
{check}: Override phase.
{install}: Adjust.
[native-inputs]: Remove python-flit.  Add python-pypa-build and python-pytest.
[home-page]: Update.
 2022-01-10 11:44:41 -05:00
Maxim Cournoyer
84558f252e
gnu: Add python-tomli-w. 
* gnu/packages/python-build.scm (python-tomli-w): New variable.
 2022-01-10 11:44:41 -05:00