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e903738f86
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24105 Commits

Author SHA1 Message Date
Christopher Baines
e903738f86
services: mysql: Add a default-value to the mysql-service-type. 
* gnu/services/databases.scm (mysql-service-type)[default-value]: Set
  to (mysql-configuration).
 2018-03-03 23:52:25 +00:00
Christopher Baines
1e6b9c6e16
services: postgresql: Add a default-value to the postgresql-service-type. 
* gnu/packages/databases.scm (<postgresql-configuration>)
  [config-file,data-directory]: Add default.
  (postgresql-service-type)[default-value]:
  Set to (postgresql-configuration).
 2018-03-03 23:52:23 +00:00
Danny Milosavljevic
8b2219d847
linux-modules: Add module-aliases. 
* gnu/build/linux-modules.scm (module-aliases): New variable.
 2018-03-03 23:40:02 +01:00
Tobias Geerinckx-Rice
c94752ad22
gnu: tor: Update to 0.3.2.10 [security fixes]. 
This release fixes TROVE-2018-001 (also tracked as CVE-2018-0490),
TROVE-2018-002 (CVE-2018-049), and TROVEs-2018-00{3,4} as well.

* gnu/packages/tor.scm (tor): Update to 0.3.2.10.
 2018-03-03 21:31:08 +01:00
Ricardo Wurmus
1adeef3194
gnu: Add dropseq-tools. 
* gnu/packages/bioinformatics.scm (dropseq-tools): New variable.
 2018-03-03 21:28:05 +01:00
Ricardo Wurmus
72299db9fe
gnu: Add java-picard-2.10.3. 
* gnu/packages/bioinformatics.scm (java-picard-2.10.3): New variable.
 2018-03-03 21:28:02 +01:00
Ricardo Wurmus
719fa958f3
gnu: Add java-htsjdk-2.10.1. 
* gnu/packages/bioinformatics.scm (java-htsjdk-2.10.1): New variable.
 2018-03-03 21:27:59 +01:00
Ricardo Wurmus
9a599c17b7
gnu: Add java-htsjdk-latest. 
* gnu/packages/bioinformatics.scm (java-htsjdk-latest): New variable.
 2018-03-03 21:27:57 +01:00
Ricardo Wurmus
9ac7db1830
gnu: Add java-biojava-alignment-4.0. 
* gnu/packages/bioinformatics.scm (java-biojava-alignment-4.0): New variable.
 2018-03-03 21:27:56 +01:00
Ricardo Wurmus
5528f9e8f0
gnu: Add java-biojava-phylo-4.0. 
* gnu/packages/bioinformatics.scm (java-biojava-phylo-4.0): New variable.
 2018-03-03 21:27:53 +01:00
Ricardo Wurmus
e44da58c16
gnu: Add java-biojava-core-4.0. 
* gnu/packages/bioinformatics.scm (java-biojava-core-4.0): New variable.
 2018-03-03 21:27:51 +01:00
Ricardo Wurmus
22c09c335b
gnu: Add java-biojava-alignment. 
* gnu/packages/bioinformatics.scm (java-biojava-alignment): New variable.
 2018-03-03 21:27:48 +01:00
Ricardo Wurmus
b28c803708
gnu: Add java-biojava-phylo. 
* gnu/packages/bioinformatics.scm (java-biojava-phylo): New variable.
 2018-03-03 21:27:46 +01:00
Ricardo Wurmus
10645b9212
gnu: Add java-forester-1.005. 
* gnu/packages/bioinformatics.scm (java-forester-1.005): New variable.
 2018-03-03 21:27:44 +01:00
Ricardo Wurmus
f09d16e594
gnu: Add java-forester. 
* gnu/packages/bioinformatics.scm (java-forester): New variable.
 2018-03-03 21:27:41 +01:00
Ricardo Wurmus
93abc975fe
gnu: Add java-openchart2. 
* gnu/packages/java.scm (java-openchart2): New variable.
 2018-03-03 21:27:39 +01:00
Ricardo Wurmus
5fef15e506
gnu: Add java-biojava-core. 
* gnu/packages/bioinformatics.scm (java-biojava-core): New variable.
 2018-03-03 21:27:36 +01:00
Ricardo Wurmus
dbb3581383
gnu: Add java-jdistlib. 
* gnu/packages/statistics.scm (java-jdistlib): New variable.
 2018-03-03 21:27:33 +01:00
Ricardo Wurmus
4e92911c82
gnu: Add java-jtransforms. 
* gnu/packages/algebra.scm (java-jtransforms): New variable.
 2018-03-03 21:27:30 +01:00
Ricardo Wurmus
24074b0bdd
gnu: Add java-jlargearrays. 
* gnu/packages/algebra.scm (java-jlargearrays): New variable.
 2018-03-03 21:27:27 +01:00
Ricardo Wurmus
c8d996080e
gnu: Add java-la4j. 
* gnu/packages/algebra.scm (java-la4j): New variable.
 2018-03-03 21:27:21 +01:00
Ricardo Wurmus
bd975831c6
gnu: Add fastqc. 
* gnu/packages/bioinformatics.scm (fastqc): New variable.
 2018-03-03 21:21:48 +01:00
Ricardo Wurmus
2f0d041816
gnu: Add java-cisd-jhdf5. 
* gnu/packages/java.scm (java-cisd-jhdf5): New variable.
 2018-03-03 21:21:48 +01:00
Ricardo Wurmus
04ddca26e6
gnu: Add java-cisd-args4j. 
* gnu/packages/java.scm (java-cisd-args4j): New variable.
 2018-03-03 21:21:47 +01:00
Ricardo Wurmus
30d554732a
gnu: Add java-cisd-base. 
* gnu/packages/java.scm (java-cisd-base): New variable.
 2018-03-03 21:21:47 +01:00
Ricardo Wurmus
f9e0fcb28f
gnu: Add texlive-fonts-iwona. 
* gnu/packages/tex.scm (texlive-fonts-iwona): New variable.
 2018-03-03 21:21:47 +01:00
Clément Lassieur
bdcf0e6fd4
services: messaging: Prosody config supports file-like objects. 
* doc/guix.texi (Messaging Services): Update accordingly.
* gnu/services/configuration.scm (serialize-configuration,
serialize-maybe-stem, serialize-package): Return strings or string-valued
gexps (these procedures were only used for their side-effects).
* gnu/services/messaging.scm (serialize-field, serialize-field-list,
enclose-quotes, serialize-raw-content, serialize-ssl-configuration,
serialize-virtualhost-configuration-list,
serialize-int-component-configuration-list,
serialize-ext-component-configuration-list,
serialize-virtualhost-configuration, serialize-int-component-configuration,
serialize-ext-component-configuration, serialize-prosody-configuration):
Return strings or string-valued gexps and stop printing.
(prosody-activation): Use SERIALIZE-PROSODY-CONFIGURATION's return value with
MIXED-TEXT-FILE instead of using its output with PLAIN-FILE.
(serialize-non-negative-integer, serialize-non-negative-integer-list): Convert
numbers to strings.
(file-object?, serialize-file-object, file-object-list?,
serialize-file-object-list): New procedures.
(ssl-configuration)[capath, cafile], (prosody-configuration)[plugin-paths,
groups-file]: Replace FILE-NAME with FILE-OBJECT.
* guix/gexp.scm (file-like?): New exported procedure.
 2018-03-03 18:21:52 +01:00
Nicolas Goaziou
fb547c3429
gnu: dictionaries: Add copyright line. 
* gnu/packages/dictionaries.scm: Add copyright line.
 2018-03-03 14:23:17 +01:00
Nicolas Goaziou
5e332c57d1
gnu: wireshark: Update to 2.4.5. 
* gnu/packages/networking.scm (wireshark): Update to 2.4.5.
 2018-03-03 14:21:20 +01:00
Nicolas Goaziou
0645da3fe3
gnu: grammalecte: Update to 0.6.2. 
* gnu/packages/dictionaries.scm (grammalecte): Update to 0.6.2.
[arguments]: Remove.
 2018-03-03 14:06:43 +01:00
Christopher Baines
62b138caf5
gnu: Add ruby-iruby. 
* gnu/packages/ruby.scm (ruby-iruby): New variable.
 2018-03-03 12:51:27 +00:00
Christopher Baines
8279b1d3b1
gnu: Add ruby-mimemagic. 
* gnu/packages/ruby.scm (ruby-mimemagic): New variable.
 2018-03-03 12:51:26 +00:00
Christopher Baines
b03eb6acb4
gnu: Add ruby-data_uri. 
* gnu/packages/ruby.scm (ruby-data_uri): New variable.
 2018-03-03 12:51:26 +00:00
Christopher Baines
d0afff263c
gnu: Add ruby-cztop. 
* gnu/packages/ruby.scm (ruby-cztop): New variable.
 2018-03-03 12:51:26 +00:00
Christopher Baines
fe5dd5f446
gnu: Add ruby-czmq-ffi-gen. 
* gnu/packages/ruby.scm (ruby-czmq-ffi-gen): New variable.
 2018-03-03 12:51:26 +00:00
Christopher Baines
afdb437c82
gnu: Add ruby-bond. 
* gnu/packages/ruby.scm (ruby-bond): New variable.
 2018-03-03 12:51:26 +00:00
Christopher Baines
a8d2bf3cab
gnu: Add ruby-bacon-bits. 
* gnu/packages/ruby.scm (ruby-bacon-bits): New variable.
 2018-03-03 12:51:26 +00:00
Christopher Baines
cf646acf96
gnu: Add ruby-mocha-on-bacon. 
* gnu/packages/ruby.scm (ruby-mocha-on-bacon): New variable.
 2018-03-03 12:51:25 +00:00
Christopher Baines
433dc74611
gnu: networking: Add czmq. 
* gnu/packages/networking.scm (czmq): New variable.
 2018-03-03 12:51:23 +00:00
Tobias Geerinckx-Rice
add928d35f
gnu: ghc-refact: Fix typo in description. 
* gnu/packages/haskell.scm (ghc-refact)[description]: Fix typo.
 2018-03-03 13:28:22 +01:00
Tobias Geerinckx-Rice
75377c6c48
gnu: quagga: Update to 1.2.4. 
* gnu/packages/networking.scm (quagga): Update to 1.2.4.
 2018-03-03 13:28:22 +01:00
Tobias Geerinckx-Rice
e6d30cf755
gnu: conky: Remove redundant MKDIR-P. 
* gnu/packages/conky.scm (conky)[arguments]: Remove redundant MKDIR-P.
 2018-03-03 13:27:17 +01:00
Tobias Geerinckx-Rice
9d13f82da8
gnu: sslh: Update to 1.19c. 
* gnu/packages/networking.scm (sslh): Update to 1.19c.
 2018-03-03 13:27:16 +01:00
Tobias Geerinckx-Rice
dbefd3ff72
gnu: wv: Edit description. 
Wv is still unmaintained – this just makes it more obvious.

* gnu/packages/wv.scm (wv)[description]: Mention the product versions in
addition to internal file format ones.  Align more closely with the
upstream description.
 2018-03-03 13:27:16 +01:00
Tobias Geerinckx-Rice
83a9003c5d
gnu: libseccomp: Update to 2.3.3. 
* gnu/packages/linux.scm (libseccomp): Update to 2.3.3.
 2018-03-03 13:27:16 +01:00
Tobias Geerinckx-Rice
74a2f8ff1f
gnu: hdparm: Update to 9.54. 
* gnu/packages/linux.scm (hdparm): Update to 9.54.
 2018-03-03 13:27:16 +01:00
Tobias Geerinckx-Rice
f4009ade25
gnu: sdl2: Update to 2.0.8. 
* gnu/packages/sdl.scm (sdl2): Update to 2.0.8.
 2018-03-03 13:27:15 +01:00
Ricardo Wurmus
ec8b3d48ff
gnu: r-httpuv: Update to 1.3.6.2. 
* gnu/packages/web.scm (r-httpuv): Update to 1.3.6.2.
 2018-03-03 10:46:35 +01:00
Ricardo Wurmus
fac40f38fe
gnu: r-dbi: Update to 0.8. 
* gnu/packages/statistics.scm (r-dbi): Update to 0.8.
 2018-03-03 10:46:35 +01:00
Ricardo Wurmus
081d143d3b
gnu: r-performanceanalytics: Update to 1.5.2. 
* gnu/packages/cran.scm (r-performanceanalytics): Update to 1.5.2.
[propagated-inputs]: Add r-quadprog.
[native-inputs]: Remove gfortran.
 2018-03-03 10:46:35 +01:00