Commit Graph

3429 Commits

Author SHA1 Message Date
Danny Milosavljevic
df93fc21a4
gnu: rust: Bootstrap rust@1.29.2 by mrustc@0.9.
This reduced bootstrap reduces the complete Rust bootstrap chain build time by
approximately 30% compared to the original (about 11 hours instead of 16
hours, on a fast machine).

* gnu/packages/patches/rust-1.45-linker-locale.patch: Delete file.
* gnu/packages/patches/rust-1.48-linker-locale.patch: Likewise.
* gnu/local.mk (dist_patch_DATA): De-register deleted files.
* gnu/packages/rust.scm (%mrustc-source): New variable.
(rust-1.29): New variable.  It is bootstrapped from mrust 0.9, which is used
in source form.
(rust-1.30): New variable.
(rust-1.31)[phases]{patch-command-exec-tests-phase}: Rewrite so that it
doesn't need to be redefined later when the file is moved.
{enable-docs}: New phase.
(rust-1.32): Disable tests.
[inputs]: Remove field.
[phases]{override-jemalloc}: Reorder after the configure phase.
(rust-1.33): Enable tests.
[phases]{disable-codegen-tests}: New phase.
(rust-1.34)[phases]{disable-codegen-tests}: Delete phase.
(rust-1.35)[arguments]: Remove field.  The disable-tidy-bins-check phase is
now defined in rust-1.30.
(rust-1.38)[phases]{patch-command-exec-tests-phase}: Remove.
{patch-command-uid-gid-test}: Do not worry about the Tidy lint test, which is disabled.
(rust-1.40)[phases]: Move #:validate-runpath? inside the use of
'substitute-keyword-arguments'.
{neuter-tidy}: Delete.
{patch-command-uid-gid-test}: Make the regexp more precise.  Remove the TODO
comment, which has been addressed.
(rust-1.44)[inputs]: Replace python2 by python-wrapper.
[phases]{use-python3}: New phase.
(rust-1.45)[source]: Remove field.  The linker locale fix is now made via ...
[phases]{set-linker-locale-to-utf8}: ... this phase.
(rust-1.46)[phases]{build, check}: Allow parallel execution.  Add comments.
{delete-install-logs}: Delete phase; it's now done in rust-1.30.
(rust-1.47)[phases]{patch-cargo-checksums}: Do not reorder phase.  The
initial ordering of the phase has been fixed with in the rust-1.30 package.
(rust-1.48)[source]: Remove field.
2021-02-05 09:46:52 -05:00
Maxim Cournoyer
87144b17f8
rust: Cleanup commit to prepare for new bootstrap.
This commit is not atomic and is not functional by itself; this is done so to
make the next set of changes more comprehensible.

* gnu/packages/patches/rust-1.19-mrustc.patch: Delete file.
* gnu/packages/patches/rust-1.30-gdb-llvm.patch: Likewise.
* gnu/packages/patches/rust-bootstrap-stage0-test.patch: Likewise.
* gnu/local.mk (dist_patch_DATA): Un-register files.
* gnu/packages/rust.scm (mrustc): Delete variable.
(rust-1.19, rust-1.20, rust-1.21 rust-1.22, rust-1.23, rust-1.24)
(rust-1.25, rust-1.26, rust-1.27, rust-1.28, rust-1.29)
(rust-1.30): Delete variables.
(rust-1.31 through rust-1.49): Fix indentation and do other cosmetic changes.
(rust): Define as rust-1.49.
2021-02-05 09:40:37 -05:00
Maxim Cournoyer
3299530c43
gnu: guile-ssh: Fix test suite on Guile 3.0.5.
* gnu/packages/patches/guile-ssh-fix-test-suite.patch: New file.
* gnu/local.mk: Register it.
* gnu/packages/ssh.scm (guile-ssh)[source]: Use it.  Also provide a better
file name than 'git-checkout'.
2021-02-04 14:58:10 -05:00
Christopher Baines
e740cc6140
Merge branch 'master' into core-updates 2021-02-03 09:57:35 +00:00
Ricardo Wurmus
5058090ed4
gnu: Add python-mediafile.
* gnu/packages/music.scm (python-mediafile): New variable.
* gnu/packages/patches/python-mediafile-wavpack.patch: New file.
* gnu/local.mk (dist_patch_DATA): Add it.
2021-02-02 22:02:22 +01:00
Alexey Abramov
5be01dcdc1
gnu: obs: Use an environment variable for plugins location.
* gnu/local.mk (dist_patch_DATA): Add it.
* gnu/packages/video.scm (obs): Use it.
* gnu/packages/patches/obs-modules-location.patch: Patch it.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2021-02-02 11:05:43 +01:00
Leo Famulari
75b775e81b
Merge branch 'staging' 2021-02-01 14:18:38 -05:00
Efraim Flashner
877ab0266c
gnu: vcflib: Fix generated pkg-config file.
* gnu/packages/bioinformatics.scm (vcflib)[arguments]: In custom
generated pkg-config file, link with all needed libraries and
fix linker library.
* gnu/packages/patches/freebayes-devendor-deps.patch: Adjust accordingly.
2021-02-01 19:02:14 +02:00
Maxim Cournoyer
98f147dbda
gnu: ganeti: Remove PYTHONPATH-altering patch.
* gnu/packages/patches/ganeti-preserve-PYTHONPATH.patch: Delete file.
* gnu/local.mk (dist_patch_DATA): Un-register it.
* gnu/packages/virtualization.scm (ganeti): Remove patch.
2021-02-01 11:54:03 -05:00
Raghav Gururajan
6bacfa63c1
gnu: Add c++-gsl.
* gnu/packages/cpp.scm (c++-gsl): New variable.
* gnu/packages/patches/c++-gsl-find-system-gtest.patch: New file.
* gnu/local.mk (dist_patch_DATA): Add it.

Signed-off-by: Leo Prikler <leo.prikler@student.tugraz.at>
2021-01-31 09:22:46 +01:00
Leo Famulari
0981f872cb
gnu: gst-plugins-good: Fix a test failure on 32-bit systems.
* gnu/packages/patches/gst-plugins-good-fix-test.patch: New file.
* gnu/local.mk (dist_patch_DATA): Add it.
* gnu/packages/gstreamer.scm (gst-plugins-good)[source]: Use it.
2021-01-31 01:00:30 -05:00
Leo Famulari
42008264d9
gnu: Remove avogadro.
This package fails to build and has been superseded by avogadro2.

* gnu/packages/chemistry.scm (avogadro): Remove variable.
* gnu/packages/patches/avogadro-boost148.patch,
gnu/packages/patches/avogadro-eigen3-update.patch,
gnu/packages/patches/avogadro-python-eigen-lib.patch: Delete files.
* gnu/local.mk (dist_patch_DATA): Remove them.
2021-01-29 15:19:02 -05:00
Maxim Cournoyer
0ad27959d8
gnu: fontconfig: Update to 2.13.93.
* gnu/packages/patches/fontconfig-hurd-path-max.patch: Delete file.
* gnu/local.mk (dist_patch_DATA): Un-register file.
* gnu/packages/fontutils.scm (fontconfig)[source]
{uri}: Use the .tar.xz archive.
{patches}: Remove field.  The patch was merged upstream.
[native-inputs]: Add python-minimal.
[phases]{skip-problematic-tests}: Add phase.
[configure-flags]: Do not set PYTHON to false.
* gnu/packages/fontutils.scm (fontconfig-with-documentation)
[native-inputs]: Add docbook-utils.
2021-01-29 15:05:41 -05:00
Tobias Geerinckx-Rice
cd80e11b95
gnu: pinentry-tty: Update to 1.1.1.
* gnu/packages/gnupg.scm (pinentry-tty): Update to 1.1.1.
(pinentry-efl)[source]: Remove patch.
* gnu/packages/patches/pinentry-efl.patch: Delete file.
* gnu/local.mk (dist_patch_DATA): Remove it.
2021-01-27 22:37:33 +01:00
Leo Famulari
5aeee07cc9
gnu: VLC: Remove obsolete patch.
* gnu/packages/patches/vlc-qt-5.15.patch: Delete file.
* gnu/local.mk (dist_patch_DATA): Remove it.
* gnu/packages/video.scm (vlc)[source]: Remove patch.
2021-01-27 16:03:16 -05:00
Mark H Weaver
cf5e0b2636
gnu: icecat: Update to 78.7.0-guix0-preview1 [security fixes].
Includes fixes for CVE-2021-23953, CVE-2021-23954, CVE-2020-26976,
CVE-2021-23960, and CVE-2021-23964.

* gnu/packages/gnuzilla.scm (%icecat-version, %icecat-build-id): Update.
(icecat-source): Update gnuzilla commit, base version, and hashes.
* gnu/packages/patches/icecat-makeicecat.patch: Adapt to new version.
2021-01-26 21:36:52 -05:00
Greg Hogan
94cf367634
gnu: boost: Patch transitive linking bug.
* gnu/packages/patches/boost-fix-transitive-linking.patch: New file.
* gnu/local.mk (dist_patch_DATA): Add it.
* gnu/packages/boost.scm (boost)[source]: Use it.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2021-01-26 23:32:54 +01:00
Maxim Cournoyer
ced3d5cbf9
gnu: nss: Update to the latest changeset to resolve test failures.
* gnu/packages/patches/nss-3.56-pkgconfig.patch: Update and ajdust.
* gnu/packages/patches/nss-increase-test-timeout.patch: Adjust.
* gnu/packages/nss.scm (nss)[version]: Compute with the git-version procedure.
[source]: Switch to use the latest changeset.  Adjust snippet to match
restructuring of the source file hierarchy.
[make-flags]: Do not chdir to the "nss" directory.
[phases]: Delete trailing #t.
{check}: Honor the '#:tests?' argument.  Update the date used with faketime
and adjust for the new all.sh script location.
{install}: Adapt to the location of the 'dist/' directory, which is now at the
same level as the 'source' checkout.
2021-01-26 14:22:34 -05:00
Leo Famulari
59c03bd4f9
gnu: Mutt: Update to 2.0.5.
* gnu/packages/patches/mutt-CVE-2021-3181.patch: Delete file.
* gnu/local.mk (dist_patch_DATA): Remove it.
* gnu/packages/mail.scm (mutt): Update to 2.0.5.
[source]: Remove obsolete patch.
2021-01-25 16:38:57 -05:00
Leo Famulari
68dd78e2e4
Merge branch 'master' into staging 2021-01-25 15:40:55 -05:00
Leo Famulari
708d3ec0de
gnu: Mutt: Fix CVE-2021-3181.
* gnu/packages/patches/mutt-CVE-2021-3181.patch: New file.
* gnu/local.mk (dist_patch_DATA): Add it.
* gnu/packages/mail.scm (mutt)[source]: Use it.
2021-01-20 19:36:24 -05:00
Ricardo Wurmus
81710c867c
gnu: r-httpuv: Update to 1.5.5.
* gnu/packages/cran.scm (r-httpuv): Update to 1.5.5.
[source]: Update patch name and remove unused modules.
* gnu/packages/patches/r-httpuv-1.5.4-unvendor-libuv.patch: Rename this file...
* gnu/packages/patches/r-httpuv-1.5.5-unvendor-libuv.patch: ...to this.
* gnu/local.mk (dist_patch_DATA): Rename it.
2021-01-20 17:18:59 +01:00
Eric Bavier
c67ff5636f
gnu: idris: Update to 1.3.3.
* gnu/packages/patches/idris-disable-test.patch: New file.
* gnu/local.mk (dist_patch_DATA): Add it.
* gnu/packages/idris.scm (idris): Update to 1.3.3.
[source]: Use the patch.
[native-inputs]: Add ghc-cheapskate.
[arguments]: Adjust cheapskate version bounds.  Make auxiliary test script
executable.
2021-01-20 09:58:31 -06:00
Efraim Flashner
99043adf46
gnu: freebayes: Don't include vcflib sources.
* gnu/packages/bioinformatics.scm (freebayes)[native-inputs]: Remove
vcflib-source, intervaltree-source. Move vcflib ...
[inputs]: ... to here.
[arguments]: Adjust 'patch-source and 'unpack-submodule-sources for
changes in vendored code.
* gnu/packages/patches/freebayes-devendor-deps.patch: Update patch.
2021-01-19 11:41:07 +02:00
Leo Famulari
8b55544212
gnu: mesa: Skip another test.
* gnu/packages/patches/mesa-skip-disk-cache-test.patch: Rename to ...
* gnu/packages/patches/mesa-skip-tests.patch: ... new file.
* gnu/local.mk (dist_patch_DATA): Adjust accordingly.
* gnu/packages/gl.scm (mesa)[source]: Adjust accordingly.
2021-01-18 15:07:05 -05:00
Efraim Flashner
fc9fd5496f
gnu: freebayes: Update to 1.3.3.
* gnu/packages/bioinformatics.scm (freebayes): Update to 1.3.3.
[source]: Add patch. Add snippet to remove vendored library.
[build-system]: Switch to meson-build-system.
[inputs]: Remove bamtools. Add fastahack, smithwaterman, tabixpp.
[native-inputs]: Remove procps, python-2, tabixpp source, smithwaterman
source, multichoose source, fsom source, filevercmp source, fastahack
source, bash-tap source. Add bash-tap, grep, pkg-config, simde, vcflib.
[arguments]: Drop make-flags. Don't delete 'configure phase. Delete
custom 'fix-tests, 'build-tabixpp-and-vcflib, 'fix-makefiles, 'install
phases. Adjust 'unpack-submodule-sources phase to changed native-inputs.
Add new 'patch-source phase.
2021-01-17 15:47:32 +02:00
Maxim Cournoyer
0054cad5ad
gnu: python-typing-inspect: Fix build on Python 3.9.
* gnu/packages/patches/python-typing-inspect-fix.patch: Add patch.
* gnu/local.mk (dist_patch_DATA): Register it.
* gnu/packages/python-xyz.scm (python-typing-inspect)[patches]: Apply it.
2021-01-15 16:33:10 -05:00
Maxim Cournoyer
43c889de85
gnu: python-pyflakes: Fix build.
* gnu/packages/patches/python-pyflakes-fix-tests.patch: Add patch.
* gnu/local.mk (dist_patch_DATA): Register it.
* gnu/packages/python-xyz.scm (python-pyflakes)[patches]: Apply it.
[home-page]: Update.
2021-01-15 16:33:08 -05:00
Ludovic Courtès
3a0c7e7d1e
gnu: findutils: Update to 4.8.0.
* gnu/packages/base.scm (findutils): Update to 4.8.0.
[source](patches): Remove "findutils-test-rwlock-threads.patch".
* gnu/packages/patches/findutils-test-rwlock-threads.patch: Remove.
* gnu/local.mk (dist_patch_DATA): Adjust accordingly.
* gnu/packages/commencement.scm (findutils-boot0)[arguments]: Add
'skip-fnmatch-test' phase.
2021-01-15 14:06:13 +01:00
Efraim Flashner
93309e25c7
gnu: vcflib: Update to 1.0.2.
* gnu/packages/bioinformatics.scm (vcflib): Update to 1.0.2.
[source]: Download using git-fetch. Remove patch. Update snippet to use
packaged libraries.
[build-system]: Switch to cmake-build-system.
[inputs]: Add bzip2.
[native-inputs]: Add package-source of fsom.
[arguments]: Delete custom 'set-flags, 'install phases. Don't delete
'configure phase. Adjust 'unpack-submodule-sources phase.
* gnu/packages/patches/vcflib-use-shared-libraries.patch: Remove file.
* gnu/local.mk (dist_patch_DATA): Remove it.
2021-01-14 20:43:31 +02:00
Maxim Cournoyer
01f0707207
Merge branch 'staging' into 'core-updates'.
Conflicts:

	gnu/local.mk
	gnu/packages/cmake.scm
	gnu/packages/curl.scm
	gnu/packages/gl.scm
	gnu/packages/glib.scm
	gnu/packages/guile.scm
	gnu/packages/node.scm
	gnu/packages/openldap.scm
	gnu/packages/package-management.scm
	gnu/packages/python-xyz.scm
	gnu/packages/python.scm
	gnu/packages/tls.scm
	gnu/packages/vpn.scm
	gnu/packages/xorg.scm
2021-01-13 23:45:53 -05:00
Vincent Legoll
aeed7218a9
gnu: Add ipxe.
* gnu/packages/bootloaders.scm (ipxe): New variable.
* gnu/packages/patches/ipxe-reproducible-geniso.patch: New file …
* gnu/local.mk (dist_patch_DATA): … add it.

Co-authored-by: Tobias Geerinckx-Rice <me@tobias.gr>
Co-authored-by: Brice Waegeneire <brice@waegenei.re>
Signed-off-by: Danny Milosavljevic <dannym@scratchpost.org>
2021-01-14 01:17:04 +01:00
Efraim Flashner
838427499d
gnu: python-libxml2: Fix building with python-3.9.
* gnu/packages/xml.scm (python-libxml2)[source]: Add patch.
* gnu/packages/patches/python-libxml2-python39-compat.patch: New file.
* gnu/local.mk (dist_patch_DATA): Register it.
2021-01-13 11:53:30 +02:00
Maxim Cournoyer
b5c4f5d9ee
gnu: python: Update to 3.9.1 and streamline package definition.
* gnu/packages/python.scm (python-3.8): Rename to...
(python-3.9): ... this.  Update version to 3.9.1.
[arguments]{make-flags}: Restore test_socket test.
[phases]{unset-SOURCE_DATE_EPOCH, reset-SOURCE_DATE_EPOCH}: Remove phases.
{rebuild-bytecode}: Simplify code.  Set the invalidation-mode argument of the
compileall module to "unchecked-hash", to ensure determinism.
(python-3): Adjust to refer to python-3.9.
* gnu/packages/patches/python-3-fix-tests.patch: Rebase and extend patch.
* gnu/packages/patches/python-3.8-fix-tests.patch: Delete file.
* gnu/local.mk (dist_patch_DATA): De-register it.
2021-01-12 23:55:48 -05:00
Tobias Geerinckx-Rice
df50d2a02d
gnu: podofo: Update to 0.9.7.
* gnu/packages/pdf.scm (podofo): Update to 0.9.7.
[source]: Remove patch.
* gnu/packages/patches/podofo-cmake-3.12.patch: Delete file.
* gnu/local.mk (dist_patch_DATA): Remove it.
2021-01-11 23:31:09 +01:00
Mathieu Othacehe
21cf0d36db
gnu: guile: Fix tests on emulated architectures.
The stack overflow test limits the virtual memory size using setrlimit with
RLIMIT_AS argument. This is ignored when using QEMU transparent emulation,
causing the test to crash.

* gnu/packages/patches/guile-2.2-skip-so-test.patch: New file.
* gnu/local.mk (dist_patch_DATA): Register it.
* gnu/packages/guile.scm (guile-3.0-latest): Add it.
2021-01-11 12:06:12 +01:00
Mathieu Othacehe
a8650a70ab
gnu: guile: Fix tests on emulated architectures.
The stack overflow test limits the virtual memory size using setrlimit with
RLIMIT_AS argument. This is ignored when using QEMU transparent emulation,
causing the test to crash.

* gnu/packages/patches/guile-2.2-skip-so-test.patch: New file.
* gnu/local.mk (dist_patch_DATA): Register it.
* gnu/packages/guile.scm (guile-2.2): Add it.
2021-01-11 11:18:54 +01:00
Efraim Flashner
808e4c141e
gnu: tipp10: Build with qt-5.
* gnu/packages/education.scm (tipp10)[source]: Add new patches.
[inputs]: Remove qt-4, sqlite. Add qtbase, qtmultimedia.
* gnu/packages/patches/tipp10-disable-downloader.patch,
gnu/packages/patches/tipp10-qt5.patch: New files.
* gnu/local.mk (dist_patch_DATA): Register them.
2021-01-10 15:10:26 +02:00
Efraim Flashner
6985a1acb3
Merge branch 'master' into staging 2021-01-10 14:30:36 +02:00
Efraim Flashner
d0fff8f840
gnu: pulseview: Fix qt-5.15 compatibility.
* gnu/packages/electronics.scm (pulseview)[source]: Add patch.
* gnu/packages/patches/pulseview-qt515-compat.patch: New file.
* gnu/local.mk (dist_patch_DATA): Register it.
2021-01-10 14:23:20 +02:00
Nicolas Goaziou
bc66d35164
gnu: emacs-scheme-complete: Update to 0.9.9.
* gnu/packages/emacs-xyz.scm (emacs-scheme-complete): Update to 0.9.9.
* gnu/packages/patches/emacs-scheme-complete-scheme-r5rs-info.patch: Remove file.
* gnu/local.mk: Update file.
2021-01-09 11:38:02 +01:00
Mark H Weaver
01fa1cd619
gnu: icecat: Update to 78.6.1-guix0-preview1 [fixes CVE-2020-16044].
* gnu/packages/gnuzilla.scm (%icecat-version, %icecat-build-id): Update.
(icecat-source): Update gnuzilla commit, base version, and hashes.
* gnu/packages/patches/icecat-makeicecat.patch: Adapt to new version.
2021-01-08 23:51:57 -05:00
Efraim Flashner
3b141f2eb9
gnu: gpsbabel: Enable tests.
* gnu/packages/patches/gps.scm (gpsbabel)[source]: Add patch.
[arguments]: Enable tests.
* gnu/packages/patches/gpsbabel-fix-i686-test.patch: New file.
* gnu/local.mk (dist_patch_DATA): Register it.
2021-01-06 11:14:53 +02:00
Björn Höfling
f024a7ba60
gnu: gpsbabel: Update to 1.7.0.
* gnu/packages/gps.scm (gpsbabel): Update to 1.7.0.
[source]: Use git-fetch, remove obsolete patches.
[inputs]: Add libusb.
* gnu/packages/patches/gpsbabel-minizip.patch: Remove file.
* gnu/packages/patches/gpsbabel-qstring.patch: Remove file.
* gnu/local.mk (dist_patch_DATA): Remove entries.

Signed-off-by: Efraim Flashner <efraim@flashner.co.il>
2021-01-06 11:14:53 +02:00
Miguel Ángel Arruga Vivas
e3281657c8
gnu: smalltalk: Fix integer multiplication overflow.
* gnu/local.mk (dist_patch_DATA): Add Smalltalk patch.
* gnu/packages/patches/smalltalk-multiplication-overflow.patch: Patch
from upstream commit 72ada189aba0283c551ead16635c1983968080b8.
* gnu/packages/smalltalk.scm (smalltalk): Use patch and link with gmp
and lightning libraries instead of the included source.
2021-01-05 12:51:12 +01:00
Raghav Gururajan
3fd4477809
gnu: pidgin: Enable MultiMedia and A/V support.
* gnu/packages/messaging.scm (pidgin) [patches]<search-patches>
[pidgin-vv-gst.patch]: New patch.
[arguments]<#:configure-flags>[--diable-vv]: Remove flag.
[--disable-gstreamer]: Remove flag.
[CFLAGS]: New flag.
[inputs]: Add farstream and gstreamer. Move gtk+-2 to ...
[propagated-inputs]: ... here.
* gnu/packages/patches/pidgin-vv-gst.patch: New file.
* gnu/local.mk (dist_patch_DATA): Add entry.

Signed-off-by: Danny Milosavljevic <dannym@scratchpost.org>
2021-01-03 17:30:30 +01:00
Raghav Gururajan
89f4f0baa9
gnu: pidgin: Upgrade to 2.14.1.
* gnu/packages/messaging.scm (pidgin) [version]: Modify.
[source]<origin>[sha256]: Modify base32.
[patches]<search-patches>[pidgin-libnm.patch]: Remove obsolete patch.
* gnu/packages/patches/pidgin-libnm.patch: Remove file.
* gnu/local.mk (dist_patch_DATA): Remove entry.

Signed-off-by: Danny Milosavljevic <dannym@scratchpost.org>
2021-01-03 17:30:29 +01:00
Matthew Kraai
402e697a11
gnu: Add Rust 1.48.
* gnu/packages/rust.scm (rust-1.48): New variable.

Signed-off-by: Jakub Kądziołka <kuba@kadziolka.net>
2021-01-02 19:19:57 +01:00
Marius Bakke
78cf7a4571
Merge branch 'ungrafting' into staging 2020-12-29 17:39:24 +01:00
Marius Bakke
a22e75c073
Merge branch 'master' into ungrafting 2020-12-29 17:37:17 +01:00