Commit Graph

446 Commits

Author SHA1 Message Date
Efraim Flashner
df13c6988a
gnu: julia-zygoterules: Update to 0.2.2.
* gnu/packages/julia-xyz.scm (julia-zygoterules): Update to 0.2.2.
2022-12-21 19:22:49 +02:00
Efraim Flashner
288ffff36e
gnu: julia-functors: Update to 0.4.1.
* gnu/packages/julia-xyz.scm (julia-functors): Update to 0.4.1.
[propagated-inputs]: Add julia-documenter, julia-staticarrays,
julia-zygote.
2022-12-21 19:22:49 +02:00
Efraim Flashner
66dda9a799
gnu: julia-reversediff: Update to 1.14.4.
* gnu/packages/julia-xyz.scm (julia-reversediff): Update to 1.14.4.
[propagated-inputs]: Add julia-chainrulescore, julia-difftests,
julia-logexpfunctions.
2022-12-21 19:22:49 +02:00
Efraim Flashner
0147f38df6
gnu: julia-dataframes: Update to 1.3.6.
* gnu/packages/julia-xyz.scm (julia-dataframes): Update to 1.3.6.
[arguments]: Adjust 'skip-failing-test phase to adjust a test to pass
with julia-1.8.
[propagated-inputs]: Add julia-categoricalarrays, julia-compat,
julia-shiftedarrays, julia-unitful.
[native-inputs]: Add julia-shiftedarrays.
2022-12-21 19:22:48 +02:00
Efraim Flashner
8154f07422
gnu: julia-offsetarrays: Update to 1.12.8.
* gnu/packages/julia-xyz.scm (julia-offsetarrays): Update to 1.12.8.
2022-12-21 19:22:48 +02:00
Efraim Flashner
3ef53be9ac
gnu: julia-dataapi: Update to 1.13.0.
* gnu/packages/julia-xyz.scm (julia-dataapi): Update to 1.13.0.
2022-12-21 19:22:48 +02:00
Efraim Flashner
b786dcb793
gnu: julia-pooledarrays: Update to 1.4.2.
* gnu/packages/julia-xyz.scm (julia-pooledarrays): Update to 1.4.2.
[native-inputs]: Add julia-offsetarrays.
2022-12-21 19:22:48 +02:00
Efraim Flashner
6f4c87b493
gnu: julia-categoricalarrays: Update to 0.10.7.
* gnu/packages/julia-xyz.scm (julia-categoricalarrays): Update to 0.10.7.
[arguments]: Add phase to skip tests depending on julia-plots.
[native-inputs]: Add julia-json, julia-json3, julia-recipesbase,
julia-sentinelarrays, julia-structtypes.
[propagated-inputs]: Add julia-requires, julia-sentinelarrays.
2022-12-21 19:22:47 +02:00
Efraim Flashner
3fb804967a
gnu: julia-invertedindices: Update to 1.1.0.
* gnu/packages/julia-xyz.scm (julia-invertedindices): Update to 1.1.0.
2022-12-21 19:22:47 +02:00
Efraim Flashner
d50025ded8
gnu: Add julia-shiftedarrays.
* gnu/packages/julia-xyz.scm (julia-shiftedarrays): New variable.
2022-12-21 19:22:47 +02:00
Efraim Flashner
ff7d15ef7d
gnu: julia-safetestsets: Fix build.
* gnu/packages/julia-xyz.scm (julia-safetestsets)[arguments]: Add phase
to fix the version string in the generated Project.toml.
2022-12-21 19:22:47 +02:00
Efraim Flashner
f4f590e735
gnu: julia-forwarddiff: Update to 0.10.34.
* gnu/packages/julia-xyz.scm (julia-forwarddiff): Update to 0.10.34.
[propagated-inputs]: Add julia-calculus, julia-difftests.
2022-12-21 19:22:46 +02:00
Efraim Flashner
cebacaa351
gnu: julia-diffrules: Update to 1.12.2.
* gnu/packages/julia-xyz.scm (julia-diffrules): Update to 1.12.2.
[propagated-inputs]: Add julia-irriationalconstants,
julia-logexpfunctions.
[native-inputs]: Add julia-finitedifferences.
2022-12-21 19:22:46 +02:00
Efraim Flashner
fe3a0fad9e
gnu: julia-nanmath: Update to 0.3.7.
* gnu/packages/julia-xyz.scm (julia-nanmath): Update to 0.3.7.
2022-12-21 19:22:46 +02:00
Efraim Flashner
8a2731ac94
gnu: julia-logexpfunctions: Update to 0.3.17.
* gnu/packages/julia-xyz.scm (julia-logexpfunctions): Update to 0.3.17.
[propagated-inputs]: Add julia-chainrulescore, julia-changesofvariables,
julia-inversefunctions and julia-irrationalcontants.
[native-inputs]: Add julia-chainrulestestutils.
2022-12-21 19:22:45 +02:00
Efraim Flashner
615d8b08ee
gnu: Add julia-changesofvariables.
* gnu/packages/julia-xyz.scm (julia-changesofvariables): New variable.
2022-12-21 19:22:45 +02:00
Efraim Flashner
a1cfa757d7
gnu: Add julia-inversefunctions.
* gnu/packages/julia-xyz.scm (julia-inversefunctions): New variable.
2022-12-21 19:22:45 +02:00
Efraim Flashner
4ec253bdf4
gnu: Add julia-irrationalconstants.
* gnu/packages/julia-xyz.scm (julia-irrationalconstants): New variable.
2022-12-21 19:22:45 +02:00
Efraim Flashner
c822cb7cb5
gnu: Remove julia-identityranges.
* gnu/packages/julia-xyz.scm (julia-identityranges): Delete variable.
2022-12-21 19:22:44 +02:00
Efraim Flashner
a7762f14b7
gnu: julia-imagetransformations: Update to 0.9.5.
* gnu/packages/julia-xyz.scm (julia-imagetransformations): Update to 0.9.5.
[propagated-inputs]: Remove julia-identityranges. Add julia-imagebase.
2022-12-21 19:22:44 +02:00
Efraim Flashner
c0dd27fd98
gnu: julia-imagebase: Update to 0.1.5.
* gnu/packages/julia-xyz.scm (julia-imagebase): Update to 0.1.5.
2022-12-21 19:22:44 +02:00
Efraim Flashner
147a38520e
gnu: julia-imagecore: Update to 0.9.4.
* gnu/packages/julia-xyz.scm (julia-imagecore): Update to 0.9.4.
2022-12-21 19:22:44 +02:00
Efraim Flashner
2bd22272da
gnu: julia-mappedarrays: Update to 0.4.1.
* gnu/packages/julia-xyz.scm (julia-mappedarrays): Update to 0.4.1.
[source]: Add snippet to fix deprecation warning and to fix the
testsuite.
[arguments]: Add 'adjust-tests phase to skip a test and absorb the
i686-linux specific phase 'fix-tests-int32-i686.
[native-inputs]: Remove julia-colortypes. Add julia-colors.
2022-12-21 17:59:34 +02:00
Efraim Flashner
c8fed74a3a
gnu: julia-coordinatetransformations: Update to 0.6.2-1.78f5a5c.
* gnu/packages/julia-xyz.scm (julia-coordinatetransformations): Update
to 0.6.2-1.78f5a5c.
2022-12-21 17:59:34 +02:00
Efraim Flashner
a5bdf0a9e7
gnu: julia-arraylayouts: Update to 0.8.16.
* gnu/packages/julia-xyz.scm (julia-arraylayouts): Update to 0.8.16.
[arguments]: Add a phase to mark a test broken.
[native-inputs]: Add julia-stablerngs.
2022-12-21 17:59:33 +02:00
Efraim Flashner
5b99829b55
gnu: julia-fillarrays: Update to 0.13.6.
* gnu/packages/julia-xyz.scm (julia-fillarrays): Update to 0.13.6.
[propagated-inputs]: Add julia-aqua.
2022-12-21 17:59:29 +02:00
Efraim Flashner
a7f41aac7a
gnu: julia-geometrybasics: Update to 0.4.2.
* gnu/packages/julia-xyz.scm (julia-geometrybasics): Update to 0.4.2.
2022-12-10 21:10:10 +02:00
Efraim Flashner
aa583170dc
gnu: julia-http: Update to 0.9.17.
* gnu/packages/julia-xyz.scm (julia-http): Update to 0.9.17.
[arguments]: Skip another test in 'disable-network-tests phase.
2022-12-10 21:10:10 +02:00
Efraim Flashner
9f980cdf52
gnu: julia-chainrulescore: Skip two tests.
* gnu/packages/julia-xyz.scm (julia-chainrulescore)[arguments]: Add a
phase to skip two tests.
2022-12-10 21:10:09 +02:00
Efraim Flashner
a5db747515
gnu: julia-colortypes: Update to 0.11.1.
* gnu/packages/julia-xyz.scm (julia-colortypes): Update to 0.11.1.
[arguments]: Add phase to skip broken test.
2022-12-10 21:10:09 +02:00
Efraim Flashner
a87f448cbf
gnu: julia-irtools: Update to 0.4.7.
* gnu/packages/julia-xyz.scm (julia-irtools): Update to 0.4.7.
2022-12-10 21:10:09 +02:00
Efraim Flashner
a11281b01c
gnu: julia-benchmarktools: Update to 1.3.2.
* gnu/packages/julia-xyz.scm (julia-benchmarktools): Update to 1.3.2.
2022-12-10 21:10:08 +02:00
Efraim Flashner
71fb8f328d
gnu: julia-fixedpointnumbers: Update to 0.8.4-1.59ee94b.
* gnu/packages/julia-xyz.scm (julia-fixedpointnumbers): Update to
0.8.4-1.59ee94b.
[arguments]: Skip tests. Remove 'disable-failing-test phase.
2022-12-10 21:10:08 +02:00
Efraim Flashner
7baba7ab58
gnu: julia-optimtestproblems: Add missing dependencies.
* gnu/packages/julia-xyz.scm (julia-optimtestproblems)[arguments]: Add
missing base dependencies to julia-package-dependencies.
2022-12-09 10:15:34 +02:00
Efraim Flashner
7d0a263846
gnu: julia-statsbase: Update to 0.33.10.
* gnu/packages/julia-xyz.scm (julia-statsbase): Update to 0.33.10.
2022-12-09 10:15:34 +02:00
Efraim Flashner
ec7e7f0033
gnu: julia-distances: Update to 0.10.7.
* gnu/packages/julia-xyz.scm (julia-distances): Update to 0.10.7.
[arguments]: Skip an additional test on 32-bit systems.
2022-12-09 10:15:34 +02:00
Efraim Flashner
f0af4ecc7b
gnu: julia-bfloat16s: Update to 0.4.0.
* gnu/packages/julia-xyz.scm (julia-bfloat16s): Update to 0.4.0.
2022-12-09 10:15:33 +02:00
Efraim Flashner
c1eae06e74
gnu: julia-unitful: Update to 1.12.2.
* gnu/packages/julia-xyz.scm (julia-unitful): Update to 1.12.2.
2022-12-08 20:10:30 +02:00
Efraim Flashner
6191d64f8a
gnu: julia-woodburymatrices: Update to 0.5.5.
* gnu/packages/julia-xyz.scm (julia-woodburymatrices): Update to 0.5.5.
[arguments]: Remove 'remove-failing-test-i686 phase.
2022-12-08 20:03:44 +02:00
Efraim Flashner
480a39ada7
gnu: julia-static: Update to 0.8.3.
* gnu/packages/julia-xyz.scm (julia-static): Update to 0.8.3.
2022-12-08 19:53:40 +02:00
Efraim Flashner
d37dad8372
gnu: julia-simd: Update to 3.4.2.
* gnu/packages/julia-xyz.scm (julia-simd): Update to 3.4.2.
2022-12-08 19:53:40 +02:00
Efraim Flashner
151a450f48
gnu: julia-jive: Update to 0.2.27.
* gnu/packages/julia-xyz.scm (julia-jive): Update to 0.2.27.
2022-12-08 19:53:40 +02:00
Efraim Flashner
600c8cec79
gnu: julia-genericschur: Update to 0.5.3.
* gnu/packages/julia-xyz.scm (julia-genericschur): Update to 0.5.3.
2022-12-08 19:53:39 +02:00
Efraim Flashner
ca89740f3b
gnu: julia-exprtools: Update to 0.1.8.
* gnu/packages/julia-xyz.scm (julia-exprtools): Update to 0.1.8.
2022-12-08 19:53:39 +02:00
Efraim Flashner
e8da13598a
gnu: julia-datastructures: Update to 0.18.13.
* gnu/packages/julia-xyz.scm (julia-datastructures): Update to 0.18.13.
2022-12-08 19:53:39 +02:00
Efraim Flashner
b2c4e83f2c
gnu: julia-aqua: Update to 0.5.5.
* gnu/packages/julia-xyz.scm (julia-aqua): Update to 0.5.5.
2022-12-08 19:53:39 +02:00
Efraim Flashner
1123b6856c
gnu: julia-abstracttrees: Update to 0.4.3.
* gnu/packages/julia-xyz.scm (julia-abstracttrees): Update to 0.4.3.
2022-12-08 19:53:38 +02:00
Efraim Flashner
61cbc51a78
gnu: julia-compat: Fix test suite.
* gnu/packages/julia-xyz.scm (julia-compat)[arguments]: Add phase to
patch shell invocation.
2022-12-08 19:53:38 +02:00
zimoun
86a2e24cdf
gnu: julia-documenter: Fix test suite regression.
* gnu/packages/julia-xyz.scm (julia-documenter)[arguments]<#:phases>:
Substitute a work around to fix the change of 'git submodule' default
behaviour introduced by Git v2.38.1.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2022-12-05 22:22:19 +01:00
Christopher Baines
ad1d3f98b1
gnu: Add comments to the bottom of a few package modules.
This will hopefully discourage patches which add new packages to the bottom of
files, as this increases the likelihood of conflicts when applying patches.

If there are more specific ways that packages should be arranged in specific
modules, this message can be updated accordingly.

* gnu/packages/bioconductor.scm: Add comment discouraging adding packages to
the bottom of the file.
* gnu/packages/bioinformatics.scm: ditto.
* gnu/packages/cran.scm: ditto.
* gnu/packages/crates-io.scm: ditto.
* gnu/packages/emacs-xyz.scm: ditto.
* gnu/packages/golang.scm: ditto.
* gnu/packages/guile-xyz.scm: ditto.
* gnu/packages/haskell-xyz.scm: ditto.
* gnu/packages/java.scm: ditto.
* gnu/packages/julia-xyz.scm: ditto.
* gnu/packages/lisp-xyz.scm: ditto.
* gnu/packages/ocaml.scm: ditto.
* gnu/packages/perl.scm: ditto.
* gnu/packages/python-science.scm: ditto.
* gnu/packages/python-xyz.scm: ditto.
* gnu/packages/ruby.scm: ditto.
* gnu/packages/tex.scm: ditto.
2022-09-10 10:45:27 +01:00