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Author SHA1 Message Date
David Elsing
e718647930
gnu: Remove suitesparse-3. 
* gnu/packages/maths.scm (suitesparse-3): Delete variable.

Signed-off-by: Efraim Flashner <efraim@flashner.co.il>
 2023-10-04 17:59:03 +03:00
David Elsing
151687a7a2
gnu: scilab: Update to 2023.1.0. 
* gnu/packages/maths.scm (scilab): Update to 2023.1.0.
[source] Use git-fetch.
<modules>: Add (guix build utils) and (ice-9 ftw).
<patches>: Add patch for hdf5 >= 1.10.
<snippet>: Move contents of the "scilab" directory to its parents. Remove
the other files and autogenerated files.
[native-inputs]: Add autoconf, autoconf-archive, automake, bison, eigen, flex,
libtool, ocaml and ocaml-findlib.
[inputs]: Add ocaml-num, replace hdf5-1.8 by hdf5-1.14 and suitesparse-3 by
suitesparse.
[arguments]: Remove quasiquote. Add --enable-build-parser,
--with-eigen-include=..., OCAMLC=... and OCAMLOPT=... to #:configure-flags.
<#:phases>: Add fix-ocaml-num, remove-desktop-files,
bootstrap-dynamic_link-scripts and build-parsers phases. Remove fixes for
compilation and linker errors from the pre-build phase.
[home-page]: Update URL.
[description]: Add two spaces between sentences.
[license]: Update to gpl2 and bsd-3.

Signed-off-by: Efraim Flashner <efraim@flashner.co.il>
 2023-10-04 17:58:22 +03:00
Vinicius Monego
962e246509
gnu: ceres: Propagate eigen and gflags. 
* gnu/packages/maths.scm (ceres)[inputs]: Move eigen and gflags to ...
[propagated-inputs]: ... here.
 2023-09-30 10:37:47 -03:00
Vinicius Monego
35a00cf3dc
gnu: Add pagmo. 
* gnu/packages/maths.scm (pagmo): New variable.
 2023-09-30 10:37:47 -03:00
Vinicius Monego
39eb0d8a94
gnu: Add bonmin. 
* gnu/packages/maths.scm (bonmin): New variable.
 2023-09-30 10:37:47 -03:00
Vinicius Monego
5cb1766ad8
gnu: Add cminpack. 
* gnu/packages/maths.scm (cminpack): New variable.
 2023-09-30 10:37:47 -03:00
Vinicius Monego
eb871ffd76
gnu: Add primesieve. 
* gnu/packages/maths.scm (primesieve): New variable.
 2023-09-30 10:37:47 -03:00
Vinicius Monego
7a53bd61a0
gnu: Add hmat. 
* gnu/packages/maths.scm (hmat): New variable.
 2023-09-30 10:37:43 -03:00
David Elsing
d78bbb912c
gnu: hdf-eos5: Update to 2.0. 
* gnu/packages/maths.scm (hdf-eos5): Update to 2.0.
[source]: Change URL and add snippet to remove generated files.
[native-inputs]: Add autoconf, automake and libtool.
[inputs]: Replace hdf5-1.8 with hdf5-1.14.
[arguments]: Do not use quasiquote and add the phases
remove-single-module-flag and fix-parallel-tests.

Signed-off-by: Christopher Baines <mail@cbaines.net>
 2023-09-30 10:29:59 +01:00
Efraim Flashner
a473d562ff
gnu: openblas-ilp64: Add symbol suffix. 
* gnu/packages/maths.scm (openblas-ilp64)[arguments]<#:make-flags>: Add the
symbol '64_' as suffix.
 2023-09-28 13:48:31 +03:00
Guillaume Le Vaillant
4f35ff1275
Merge branch 'lisp-team' 2023-09-23 10:29:31 +02:00
Guillaume Le Vaillant
17c13b4a42
gnu: maxima: Update to 5.47.0. 
* gnu/packages/maths.scm (maxima): Update to 5.47.0.
  [inputs]: Remove labels.
  [arguments]: Use gexps. Remove trailing booleans.
 2023-09-04 13:49:22 +02:00
Andreas Enge
b51e45d3aa
gnu: matio: Update to 1.5.23. 
* gnu/packages/maths.scm (matio): Update to 1.5.23.
 2023-08-31 12:53:36 +02:00
Andreas Enge
e5ce59e212
gnu: matio: Use standard hd5 as input. 
* gnu/packages/maths.scm (matio)[inputs]: Replace hdf5-1.8 by hdf5,
  which is version 1.10.
 2023-08-31 12:53:36 +02:00
Andy Tai
67268d9a81
gnu: octave-cli: Update to 8.3.0 
* gnu/packages/maths.scm (octave-cli): Update to 8.3.0

Signed-off-by: Eric Bavier <bavier@posteo.net>
 2023-09-13 09:22:28 -05:00
Andreas Enge
6a01c1142b
gnu: hdf4, hdf4-alt: Update to 4.2.16-2. 
* gnu/packages/maths.scm (hdf4)[source]: Update to 4.2.16-2. Drop patches
that do not apply any more.
[arguments]: Drop configure flag related to libtirpc. Add configure flag
to build xdr library and drop unneeded substitutions.
* gnu/packages/patches/hdf4-architectures.patch,
gnu/packages/patches/hdf4-tirpc.patch: Remove files.
* gnu/local.mk (dist_patch_DATA): Unregister patches.
 2023-09-13 11:18:42 +02:00
Andy Tai
2d366e309b
gnu: Add ruy. 
* gnu/packages/maths.scm (ruy): New variable.

Signed-off-by: Ricardo Wurmus <rekado@elephly.net>
 2023-09-08 10:53:37 +02:00
Andreas Enge
b08178a053
gnu: hdf5: Remove 1.12.2. 
* gnu/packages/maths.scm (hdf5-1.12): Remove variable.
 2023-08-21 22:35:34 +02:00
Andreas Enge
c82b83a859
gnu: scilab: Update to 5.5.2. 
* gnu/packages/maths.scm (scilab): Update to 5.5.2.
 2023-08-18 20:12:22 +02:00
Nicolas Graves
48648031a5
gnu: scilab: Fix compilation error. 
Signed-off-by: Andreas Enge <andreas@enge.fr>
 2023-08-18 18:11:36 +02:00
Ludovic Courtès
dcf05f2321
gnu: libflame: Update to 70c19e7. 
* gnu/packages/maths.scm (libflame): Update to 70c19e7.
[arguments]: Add #:make-flags.
 2023-08-17 17:33:53 +02:00
Janneke Nieuwenhuizen
11c9743350
gnu: mcrl2: Update to 202206.1. 
* gnu/packages/maths.scm (mcrl2): Update to 202206.1.
[source]: Remove patches.
* gnu/packages/patches/mcrl2-fix-1687.patch,
gnu/packages/patches/mcrl2-fix-counterexample.patch: Remove files.
* gnu/local.mk (dist_patch_DATA): Remove their references.
 2023-08-17 08:08:59 +02:00
Ludovic Courtès
2a4047e540
gnu: libflame: Remove input labels and use gexps. 
* gnu/packages/maths.scm (libflame)[arguments]: Use gexps and remove
trailing #t in phases.
[inputs, native-inputs]: Remove labels.
 2023-08-11 00:50:47 +02:00
Ludovic Courtès
229faac39b
gnu: libflame: Remove dependency on OpenBLAS. 
This dependency was build-time-only and unused at compile time (the test
suite is unaffected).

* gnu/packages/maths.scm (libflame)[native-inputs]: Remove OPENBLAS.
 2023-08-11 00:50:47 +02:00
Ludovic Courtès
aae69b7163
gnu: libflame: Tweak synopsis. 
* gnu/packages/maths.scm (libflame)[synopsis]: Expand acronym.
 2023-08-08 18:01:55 +02:00
Ludovic Courtès
508458de03
gnu: blis: Provide the CBLAS interface. 
* gnu/packages/maths.scm (blis)[arguments]: Add #:configure-flags.
 2023-08-08 18:01:54 +02:00
Andreas Enge
c47f5587a2
gnu: maths: Remove a duplicate module import. 
Reported-by: Andy Tai <atai@atai.org>

* gnu/packages/maths.scm: Remove duplicate line.
 2023-08-07 17:26:40 +02:00
Tobias Geerinckx-Rice
ae3a58cf84
gnu: libpoly: Update to 0.1.12. 
* gnu/packages/maths.scm (libpoly): Update to 0.1.12.
 2023-07-30 02:00:00 +02:00
Tobias Geerinckx-Rice
a27d172ee6
gnu: calc: Update to 2.14.2.1. 
* gnu/packages/maths.scm (calc): Update to 2.14.2.1.
 2023-07-23 02:00:00 +02:00
Distopico
67cc7b1635
gnu: Add calc. 
* gnu/packages/maths.scm (calc): New variable.

Co-authored-by: Andreas Enge <andreas@enge.fr>
 2023-07-26 16:31:36 +02:00
Tobias Geerinckx-Rice
24d4e8182d
gnu: vc: Use G-expressions. 
* gnu/packages/maths.scm (vc)[arguments]:
Rewrite as G-expressions.
 2023-07-16 02:00:01 +02:00
Tobias Geerinckx-Rice
d6cb55b395
gnu: vc: Update to 1.4.3. 
* gnu/packages/maths.scm (vc): Update to 1.4.3.
[arguments]: Don't explicitly return #t from phases.
 2023-07-16 02:00:01 +02:00
Tobias Geerinckx-Rice
7abf96a2ec
gnu: frama-c: Build verbosely. 
As verbosely as most other packages, that is.

* gnu/packages/maths.scm (frama-c)[arguments]: Add "--enable-verbosemake"
to #:configure-flags.
 2023-07-16 02:00:08 +02:00
Nicolas Goaziou
29cc6b1cd6
gnu: Deprecate `texlive-tiny'. 
At this point, there are three equivalent TeX Live sub-systems:
texlive-scheme-basic, texlive-tiny, and (texlive-updmap.cfg).  It is confusing
to keep so many around.

* doc/contributing.texi (Submitting Patches): Remove reference to
TEXLIVE-TINY.
* gnu/packages/algebra.scm (pari-gp)[native-inputs]:
(giac)[native-inputs]:
* gnu/packages/chez.scm (chez-sockets)[native-inputs]:
* gnu/packages/engineering.scm (fastcap)[native-inputs]:
* gnu/packages/gettext.scm (po4a)[native-inputs]:
* gnu/packages/maths.scm (cddlib)[native-inputs]:
(gnuplot)[native-inputs]:
(itpp)[native-inputs]:
* gnu/packages/ocaml.scm (unison)[native-inputs]:
* gnu/packages/pdf.scm (extractpdfmark)[native-inputs]:
* gnu/packages/photo.scm (enblend-enfuse): Replace TEXLIVE-TINY with a call to TEXLIVE-UPDMAP.CFG.
* gnu/packages/radio.scm (gnuradio)[native-inputs]: Remove unnecessary
TEXLIVE-TINY.
* gnu/packages/tex.scm (texlive-tiny): Deprecate it in favor of TEXLIVE-SCHEME-BASIC.
(texlive-makecmds)[native-inputs]:  Replace TEXLIVE-TINY with a call to TEXLIVE-UPDMAP.CFG.
* guix/lint.scm (check-inputs-should-be-native): Check only for
"texlive-updmap.cfg" input name.
 2023-07-18 18:16:49 +02:00
Nicolas Goaziou
7a18bd9e74
gnu: Rationalize texlive-updmap.cfg and texlive-tiny inputs. 
TEXLIVE-UPDMAP.CFG and TEXLIVE-TINY should only be used as native inputs.
Also remove texlive packages already provided by them.

* doc/build.scm (pdf-manual):
* gnu/packages/algebra.scm (pari-gp):
* gnu/packages/bioinformatics.scm (discrover):
(phyml):
(velvet):
* gnu/packages/chemistry.scm (yaehmop):
* gnu/packages/chez.scm (stex-bootstrap):
(chez-web):
(chez-sockets):
* gnu/packages/cran.scm (r-prereg):
* gnu/packages/docbook.scm (dblatex):
* gnu/packages/emacs-xyz.scm (emacs-auctex):
* gnu/packages/engineering.scm (fastcap):
* gnu/packages/fsf.scm (book-faif):
* gnu/packages/graphviz.scm (dot2tex):
* gnu/packages/maths.scm (hypre):
* gnu/packages/ocaml.scm (unison):
(ocaml-bibtex2html):
* gnu/packages/plotutils.scm (asymptote):
* gnu/packages/python-xyz.scm (python-nbconvert):
(python-pypandoc):
* gnu/packages/radio.scm (gnuradio):
(libosmo-dsp):
* gnu/packages/statistics.scm (r-with-tests):
* gnu/packages/tex.scm (texlive-makecmds):
(texlive-innerscript):
(teximpatient):
(texlive-xkeyval): Remove texlive packages already provided by
TEXLIVE-UPDMAP.CFG.  Don't add TEXLIVE-TINY or TEXLIVE-UPDMAP.CFG as inputs.
 2023-07-18 18:16:47 +02:00
Nicolas Goaziou
e8f3b8bdc7
gnu: hypre: Fix error when building documentation. 
* gnu/packages/maths.scm (hypre)[native-inputs]: Add TEXLIVE-LATEXMK.
 2023-07-18 18:16:42 +02:00
Nicolas Goaziou
eab3b80369
gnu: texlive-jknappen: Deprecate package. 
* gnu/packages/tex.scm (texlive-jknappen): Deprecate variable.
(texlive-paralist):
(texlive-jadetex):
(texlive-xindy):
* gnu/packages/maths.scm (hypre):
* gnu/packages/python-xyz.scm (python-nbconvert): Use TEXLIVE-JKNAPLTX instead.
 2023-07-18 18:11:41 +02:00
Nicolas Goaziou
50e49cf9b4
gnu: texlive-latex-needspace -> texlive-needspace. 
* gnu/packages/tex.scm (texlive-needspace): New variable.
(texlive-latex-needspace): Deprecate variable.
* gnu/packages/maths.scm (hypre)[native-inputs]:
* gnu/packages/sphinx.scm (python-sphinx)[propagated-inputs]: Use new name.
 2023-07-18 18:11:00 +02:00
Nicolas Goaziou
3c3bb270da
gnu: texlive-latex-varwidth -> texlive-varwidth. 
* gnu/packages/tex.scm (texlive-varwidth): New variable.
(texlive-latex-varwidth): Deprecate variable.
(texlive-adjustbox): Use new name.
* gnu/packages/maths.scm (hypre)[native-inputs]: Use new name. Re-order
alphabetically.
* gnu/packages/sphinx.scm (python-sphinx)[propagated-inputs]: Use new
name. Re-order alphabetically.
 2023-07-18 18:10:59 +02:00
Nicolas Goaziou
c81b4d6002
gnu: texlive-latex-tabulary -> texlive-tabulary. 
* gnu/packages/tex.scm (texlive-tabulary): New variable.
(texlive-latex-tabulary): Deprecate variable.
* gnu/packages/maths.scm (hypre):
* gnu/packages/sphinx.scm (python-sphinx): Use new name.
 2023-07-18 18:10:55 +02:00
Nicolas Goaziou
daf6f34c1e
gnu: texlive-latex-parskip -> texlive-parskip. 
* gnu/packages/tex.scm (texlive-parskip): New variable.
(texlive-latex-parskip): Deprecate variable.
* gnu/packages/maths.scm (hypre):
* gnu/packages/plotutils.scm (asymptote):
* gnu/packages/python-xyz.scm (python-nbconvert):
* gnu/packages/sphinx.scm (python-sphinx): Use new name.
 2023-07-18 18:10:54 +02:00
Nicolas Goaziou
f0a491f717
gnu: texlive-latex-multirow -> texlive-multirow. 
* gnu/packages/tex.scm (texlive-multirow): New variable.
(texlive-latex-multirow): Deprecate variable.
(texlive-metalogo):
* gnu/packages/docbook.scm (dblatex):
* gnu/packages/maths.scm (hypre): Use new name.
 2023-07-18 18:10:53 +02:00
Nicolas Goaziou
bd12824e56
gnu: texlive-latex-float -> texlive-float. 
* gnu/packages/tex.scm (texlive-float): New variable.
(texlive-latex-float): Deprecate variable.
(texlive-showexpl):
(texlive-minted):
(texlive-apa6):
* gnu/packages/docbook.scm (dblatex):
* gnu/packages/maths.scm (hypre):
* gnu/packages/python-xyz.scm (python-nbconvert):
* gnu/packages/sphinx.scm (python-sphinx): Use new name.
 2023-07-18 18:10:51 +02:00
Nicolas Goaziou
51a55ec735
gnu: texlive-latex-colortbl -> texlive-colortbl. 
* gnu/packages/tex.scm (texlive-colortbl): New variable.
(texlive-latex-colortbl): Deprecate variable.
(texlive-jadetex):
* gnu/packages/docbook.scm (dblatex):
* gnu/packages/maths.scm (hypre): Use new name.
 2023-07-18 18:10:50 +02:00
Nicolas Goaziou
e5e13d03f0
gnu: texlive-latex-cmap -> texlive-cmap. 
* gnu/packages/tex.scm (texlive-cmap): New variable.
(texlive-latex-cmap): Deprecate variable.
* gnu/packages/maths.scm (hypre):
* gnu/packages/sphinx.scm (python-sphinx): Use new name.
 2023-07-18 18:10:49 +02:00
Nicolas Goaziou
9550a20361
gnu: texlive-latex-upquote -> texlive-upquote. 
* gnu/packages/tex.scm (texlive-upquote): New variable.
(texlive-latex-upquote): Deprecate variable.
* gnu/packages/cran.scm (r-prereg):
* gnu/packages/maths.scm (hypre):
* gnu/packages/python-xyz.scm (python-nbconvert):
* gnu/packages/sphinx.scm (python-sphinx):
* gnu/packages/statistics.scm (r-with-tests): Use new name.
 2023-07-18 18:10:46 +02:00
Nicolas Goaziou
9e4adea8ad
gnu: texlive-latex-geometry -> texlive-geometry. 
* gnu/packages/tex.scm (texlive-geometry): New variable.
(texlive-latex-geometry): Deprecate variable.
(texlive-xindy):
* gnu/packages/chemistry.scm (yaehmop):
* gnu/packages/cran.scm (r-prereg):
* gnu/packages/graphviz.scm (dot2tex):
* gnu/packages/maths.scm (hypre):
* gnu/packages/plotutils.scm (asymptote):
* gnu/packages/python-xyz.scm (python-nbconvert):
* gnu/packages/sphinx.scm (python-sphinx): Use new name.
 2023-07-18 18:10:44 +02:00
Nicolas Goaziou
49928a5dc2
gnu: texlive-latex-framed -> texlive-framed. 
* gnu/packages/tex.scm (texlive-framed): New variable.
(texlive-latex-framed): Deprecate variable.
(texlive-minted):
* gnu/packages/maths.scm (hypre):
* gnu/packages/sphinx.scm (python-sphinx): Use new name.
 2023-07-18 18:10:42 +02:00
Nicolas Goaziou
ec56993c84
gnu: texlive-latex-fncychap -> texlive-fncychap. 
* gnu/packages/tex.scm (texlive-fncychap): New variable.
(texlive-latex-fncychap): Deprecate variable.
* gnu/packages/maths.scm (hypre):
* gnu/packages/sphinx.scm (python-sphinx): Use new name.
 2023-07-18 18:10:41 +02:00
Nicolas Goaziou
c0b3254568
gnu: texlive-latex-tocloft -> texlive-tocloft. 
* gnu/packages/tex.scm (texlive-tocloft): New variable.
(texlive-latex-tocloft): Deprecate variable.
* gnu/packages/maths.scm (hypre): Use new name.
 2023-07-18 18:10:41 +02:00