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Author SHA1 Message Date
Efraim Flashner
66b2fd0d04
gnu: flatpak: Honor the #:tests? flag. 
* gnu/packages/package-management.scm (flatpak)[arguments]: Adjust
custom 'check phase to honor the #:tests? flag.
 2023-03-22 10:40:35 +02:00
Efraim Flashner
a08d3cba83
gnu: flatpak: Update to 1.14.4. 
* gnu/packages/package-management.scm (flatpak): Update to 1.14.4.
 2023-03-22 10:31:15 +02:00
Efraim Flashner
37664e1cec
gnu: toot: Update to 0.36.0. 
* gnu/packages/mastodon.scm (toot): Update to 0.36.0.
 2023-03-22 10:31:15 +02:00
Efraim Flashner
38f58ae0c0
gnu: git-annex: Update to 10.20230321. 
* gnu/packages/haskell-apps.scm (git-annex): Update to 10.20230321.
 2023-03-22 10:31:15 +02:00
Antero Mejr
31bed61b82
gnu: Add parform. 
* gnu/packages/algebra.scm (parform): New variable.

Signed-off-by: Eric Bavier <bavier@posteo.net>
 2023-03-21 23:03:20 -05:00
Antero Mejr
15ee08ebf2
gnu: Add form. 
* gnu/packages/algebra.scm (form): New variable.

Signed-off-by: Eric Bavier <bavier@posteo.net>
 2023-03-21 23:03:10 -05:00
Danny O'Brien
03ab1a2762
gnu: dbacl: Fix failing check phase. 
* gnu/packages/patches/dbacl-icheck-multiple-definitions.patch: New file.
* gnu/local.mk (dist_patch_DATA): Register it.
* gnu/packages/textutils.scm (dbacl) [source]: Apply patch.

Signed-off-by: Maxim Cournoyer <maxim.cournoyer@gmail.com>
 2023-03-21 22:13:29 -04:00
Jake Leporte
f5d502f7f4
gnu: Add pcsc-tools. 
* gnu/packages/security-token.scm (pcsc-tools): New variable.

Signed-off-by: Maxim Cournoyer <maxim.cournoyer@gmail.com>
Modified-by: Maxim Cournoyer <maxim.cournoyer@gmail.com>
 2023-03-21 21:45:12 -04:00
Jake Leporte
608b26699f
gnu: Add perl-pcsc. 
* gnu/packages/perl.scm (perl-pcsc): New variable.

Signed-off-by: Maxim Cournoyer <maxim.cournoyer@gmail.com>
 2023-03-21 21:44:54 -04:00
Felix Gruber
151be9ec76
gnu: Add python-pluggy-next. 
* gnu/packages/python-xyz.scm (python-pluggy-next): New variable.

Signed-off-by: Maxim Cournoyer <maxim.cournoyer@gmail.com>
 2023-03-21 21:12:09 -04:00
Jake Leporte
61e17e2f0d
gnu: Add dozenal. 
* gnu/packages/maths.scm (dozenal): New variable.

Signed-off-by: Maxim Cournoyer <maxim.cournoyer@gmail.com>
Modified-by: Maxim Cournoyer <maxim.cournoyer@gmail.com>
 2023-03-21 20:43:17 -04:00
Jake Leporte
58cb6daa76
gnu: Add xforms-gl. 
* gnu/packages/xdisorg.scm (xforms-gl): New variable.

Signed-off-by: Maxim Cournoyer <maxim.cournoyer@gmail.com>
Modified-by: Maxim Cournoyer <maxim.cournoyer@gmail.com>
 2023-03-21 20:43:09 -04:00
Jake Leporte
f4b88d5ffc
gnu: Add xforms. 
* gnu/packages/xdisorg.scm (xforms): New variable.

Signed-off-by: Maxim Cournoyer <maxim.cournoyer@gmail.com>
Modified-by: Maxim Cournoyer <maxim.cournoyer@gmail.com>
 2023-03-21 20:42:54 -04:00
Jake Leporte
4995278574
gnu: Add perl-par. 
* gnu/packges/perl.scm (perl-par): New variable.

Signed-off-by: Maxim Cournoyer <maxim.cournoyer@gmail.com>
 2023-03-21 20:42:51 -04:00
Bruno Victal
0c53cbcc56
tests: gdm: Remove tmpfs related tests. 
This test never managed to reveal the problem described in [1] because
from gnu/system/vm.scm it is seen that our "/tmp" mount is filtered out and
replaced with a "/tmp" file-system that is mounted with (needed-for-boot? #t).
This last bit is crucial as the problem was caused by the user specified "/tmp"
file-system lacking this part which caused "/tmp" being mounted after
x11-socket-directory-service has run, effectively shadowing the directory.

[1]: <https://issues.guix.gnu.org/57589>

* gnu/tests/gdm.scm (%test-gdm-wayland-tmpfs): Delete variable.
(make-os): Remove tmpfs? argument.
(run-gdm-test): Remove tmpfs? argument. Add a small delay since
waiting for gdm.pid is not enough, causing the tests to fail sporadically.

Reviewed-by: Josselin Poiret <dev@jpoiret.xyz>
Signed-off-by: Maxim Cournoyer <maxim.cournoyer@gmail.com>
 2023-03-21 16:53:28 -04:00
Bruno Victal
b7506eb334
services: Add x11-socket-directory-service-type. 
The x11-socket-directory-service misuses activation-service-type
to create directories. This kind of usage is incorrect since
activation-service-type does not depend on file-systems, hence incompatible
with user defined /tmp mount.

This commit turns x11-socket-directory-service into a shepherd one-shot
service by defining a new x11-socket-directory-service-type.

* gnu/services/desktop.scm (x11-socket-directory-service-type): New variable.
(x11-socket-directory-service): Deprecate procedure.
(desktop-services-for-system): Use new service-type.
* gnu/tests/lightdm.scm: Ditto.

Reviewed-by: Josselin Poiret <dev@jpoiret.xyz>
Signed-off-by: Maxim Cournoyer <maxim.cournoyer@gmail.com>
 2023-03-21 16:53:27 -04:00
Maxim Cournoyer
ad8abf18dd
gnu: manuskript: Add bash-minimal to inputs. 
* gnu/packages/text-editors.scm (manuskript) [inputs]: Add bash-minimal.
 2023-03-21 15:14:49 -04:00
Nicolas Goaziou
55f29c1cbe
gnu: manuskript: Update to 0.15.0. 
* gnu/packages/text-editors.scm (manuskript): Update to 0.15.0.
[inputs]: Add PYTHON-PYENCHANT.

Signed-off-by: Maxim Cournoyer <maxim.cournoyer@gmail.com>
 2023-03-21 15:09:45 -04:00
Bruno Victal
c88582a674
services: mcron: Add log-file and date-format fields. 
* doc/guix.texi (Scheduled Job Execution): Document it.
* gnu/services/mcron.scm (mcron-configuration)[log-file, date-format]: New field.
(mcron-shepherd-services): Add log-file and date-format support.
Use file-append instead of string-append.

Signed-off-by: Maxim Cournoyer <maxim.cournoyer@gmail.com>
 2023-03-21 14:51:24 -04:00
Bruno Victal
edb398449f
services: mcron: Use match-record. 
* gnu/services/mcron.scm (mcron-shepherd-services): Use match-record.

Signed-off-by: Maxim Cournoyer <maxim.cournoyer@gmail.com>
 2023-03-21 14:31:22 -04:00
Bruno Victal
6f4fd8f5b8
services: mcron: Restyle mcron-configuration. 
* doc/guix.texi (Scheduled Job Execution): Sync doc with source.
* gnu/services/mcron.scm (mcron-configuration): Restyle.
[log-format]: Fix incorrectly formatted text.

Signed-off-by: Maxim Cournoyer <maxim.cournoyer@gmail.com>
 2023-03-21 14:31:22 -04:00
Vagrant Cascadian
85df7a621c
gnu: diffoscope: Update to 239. 
* gnu/packages/diffoscope.scm (diffoscope): Update to 239.
[native-inputs]: Replace poppler-next with poppler.

Signed-off-by: Maxim Cournoyer <maxim.cournoyer@gmail.com>
Modified-by: Maxim Cournoyer <maxim.cournoyer@gmail.com>
 2023-03-21 14:31:22 -04:00
Hugo Buddelmeijer
2120c768f2
gnu: python-pypandoc: Upgrade to 1.7.5. 
The tests of python-pypandoc 1.6.5 fail; these are fixed in 1.7.5:
6670e906dc

The tests of later versions of python-pypandoc also fail though:
https://github.com/JessicaTegner/pypandoc/pull/327

Finally, python-pypandoc requires the pandoc data to be embeded in
the binary:
https://github.com/jgm/pandoc/blob/main/INSTALL.md#creating-a-relocatable-binary

* gnu/packages/python-xyz.scm (python-pypandoc): Upgrade to 1.7.5
* gnu/packages/haskel-xyz.scm (pandoc): Embed data files.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
 2023-03-21 19:13:34 +01:00
Andy Tai
6a23ef814a
gnu: pocl: Update to 3.1 
* gnu/packages/opencl.scm (pocl): Update to 3.1
[native-inputs]: Add python-3
[arguments]: Update RPATH. Skip failed tests on aarch64

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
 2023-03-21 19:13:34 +01:00
Jack Hill
210c929c26
gnu: ssh-to-age: Update to 1.1.2. 
* gnu/packages/password-utils.scm (ssh-to-age): Update to 1.1.2.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
 2023-03-21 19:13:34 +01:00
Jack Hill
52577616c5
gnu: pass-age: Update to 1.7.4a1. 
* gnu/packages/password-utils.scm (pass-age): Update to 1.7.4a1.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
 2023-03-21 19:13:33 +01:00
Jack Hill
82690c9b36
gnu: go-filippo-io-age: Update to 1.1.1. 
* gnu/packages/golang.scm (go-filippo-io-age): Update to 1.1.1.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
 2023-03-21 19:13:33 +01:00
Thomas Albers
e4319d4ca6
gnu: Add dvisvgm. 
* gnu/packages/tex.scm (dvisvgm): New variable.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
 2023-03-21 19:13:33 +01:00
Ludovic Courtès
4fbae445f7
gnu: fnlfmt: Update to 0.3.0. 
* gnu/packages/lua.scm (fnlfmt): Update to 0.3.0.
 2023-03-21 19:13:33 +01:00
Yovan Naumovski
e3001aef29
gnu: fennel: Update to 1.3.0. 
* gnu/packages/lua.scm (fennel): Update to 1.3.0.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
 2023-03-21 19:13:33 +01:00
Ludovic Courtès
037f0611f4
gnu: vtk: Remove reference to GCC. 
This removes GCC from the closure of VTK, reducing its size by 200 MiB (17%).

* gnu/packages/image-processing.scm (vtk)[arguments]: Change to gexps.
Add #:phases.
(vtk-7)[arguments]: Turn #:configure-flags into a gexp.
 2023-03-21 19:13:33 +01:00
Ludovic Courtès
eff652793f
gnu: vtk: Enable OpenMP, TBB, and Open MPI support. 
* gnu/packages/image-processing.scm (vtk)[arguments]: Pass options to
enable OpenMP, TBB, and MPI.
[inputs]: Add OPENMPI.
[propagated-inputs]: Add TBB.
 2023-03-21 19:13:32 +01:00
Josselin Poiret
02b1eb644a
gnu: gnulib: Depend on git-minimal/pinned. 
* gnu/packages/build-tools.scm (gnulib)[native-inputs]: Change git to
git-minimal/pinned.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
 2023-03-21 19:13:32 +01:00
Ludovic Courtès
0143e3f291
services: static-networking: 'eval-when' for code used at expansion-time. 
Reported by bjc on #guix.

* gnu/services/base.scm (valid-name, cidr->netmask): Wrap in 'eval-when'
since they are used by "compile-time procedures" (macros).
 2023-03-21 19:13:32 +01:00
Sergey Trofimov
d44970748f
gnu: fdroidcl: Update to 0.7.0. 
* gnu/packages/android.scm (fdroidcl): Update to 0.7.0.

Signed-off-by: Maxim Cournoyer <maxim.cournoyer@gmail.com>
 2023-03-21 14:06:47 -04:00
Sergey Trofimov
441951bb03
gnu: Add go-github-com-schollz-progressbar-v3. 
* gnu/packages/golang.scm (go-github-com-schollz-progressbar-v3): New variable.

Signed-off-by: Maxim Cournoyer <maxim.cournoyer@gmail.com>
 2023-03-21 14:06:39 -04:00
Sergey Trofimov
28418027e5
gnu: Add go-github-com-mitchellh-colorstring. 
* gnu/packages/golang.scm
(go-github-com-mitchellh-colorstring): New variable.

Signed-off-by: Maxim Cournoyer <maxim.cournoyer@gmail.com>
 2023-03-21 13:48:44 -04:00
Antero Mejr
8b85aeaa08
gnu: Add samplebrain. 
* gnu/packages/music.scm (samplebrain): New variable.

Signed-off-by: Maxim Cournoyer <maxim.cournoyer@gmail.com>
 2023-03-21 13:44:18 -04:00
Christopher Baines
43e4e52dfd
gnu: guix-build-coordinator: Update to 0-74.804165f. 
* gnu/packages/package-management.scm (guix-build-coordinator): Update to
0-74.804165f.
 2023-03-21 16:33:00 +00:00
Guillaume Le Vaillant
d377cfbd11
gnu: Update URLs of migrated repositories. 
* gnu/packages/lisp-xyz.scm (sbcl-bst, sbcl-cl-octet-streams, sbcl-lzlib,
  sbcl-simple-parallel-tasks, sbcl-cl-z85, sbcl-utm-ups, sbcl-mgrs,
  sbcl-maidenhead, sbcl-olc, sbcl-simple-neural-network, sbcl-zstd)[source,
  home-page]: Use codeberg URL instead of github one.
* gnu/packages/radio.scm (convert-samples)[source, home-page]: Likewise.
 2023-03-21 15:26:29 +01:00
Bruno Victal
eba81e68ac
services: configuration: simplify alist? procedure. 
* gnu/services/configuration.scm (alist?): simplify procedure.

Signed-off-by: Maxim Cournoyer <maxim.cournoyer@gmail.com>
 2023-03-21 09:41:42 -04:00
Sughosha
a586c3996e
gnu: paulxstretch: Patch paths. 
* gnu/packages/music.scm (paulxstretch) [arguments]: Add patch-paths phase.
[inputs]: Add dconf, fontconfig and glib:bin.

Modified-by: Maxim Cournoyer <maxim.cournoyer@gmail.com>
Signed-off-by: Maxim Cournoyer <maxim.cournoyer@gmail.com>
 2023-03-21 09:41:42 -04:00
Lars-Dominik Braun
38b64d47ed
gnu: Add python-brian2tools. 
* gnu/packages/machine-learning.scm (python-brian2tools): New variable.
 2023-03-21 13:58:47 +01:00
Lars-Dominik Braun
34f684371e
gnu: Add python-libneuroml. 
* gnu/packages/python-science.scm (python-libneuroml): New variable.
 2023-03-21 13:58:42 +01:00
Lars-Dominik Braun
9f882daf11
gnu: Add python-pylems. 
* gnu/packages/python-science.scm (python-pylems): New variable.
 2023-03-21 13:56:47 +01:00
Lars-Dominik Braun
4e5001f915
gnu: Add python-markdown-strings. 
* gnu/packages/python-xyz.scm (python-markdown-strings): New variable.
 2023-03-21 13:56:44 +01:00
Ricardo Wurmus
31cdb03704
gnu: r-tibble: Update to 3.2.1. 
* gnu/packages/statistics.scm (r-tibble): Update to 3.2.1.
 2023-03-21 12:31:34 +01:00
Ricardo Wurmus
38fc19c4f5
gnu: r-keras: Update to 2.11.1. 
* gnu/packages/cran.scm (r-keras): Update to 2.11.1.
 2023-03-21 12:31:34 +01:00
Ricardo Wurmus
2200572e25
gnu: r-intervals: Update to 0.15.3. 
* gnu/packages/cran.scm (r-intervals): Update to 0.15.3.
 2023-03-21 12:31:34 +01:00
Ricardo Wurmus
ab179ed1d8
gnu: r-maldiquant: Update to 1.22.1. 
* gnu/packages/cran.scm (r-maldiquant): Update to 1.22.1.
 2023-03-21 12:31:34 +01:00
Ricardo Wurmus
2fbc674039
gnu: r-metafor: Update to 4.0-0. 
* gnu/packages/cran.scm (r-metafor): Update to 4.0-0.
[propagated-inputs]: Add r-numderiv.
[native-inputs]: Add r-r-rsp.
 2023-03-21 12:31:34 +01:00
Ricardo Wurmus
328cadff99
gnu: r-qgraph: Update to 1.9.4. 
* gnu/packages/cran.scm (r-qgraph): Update to 1.9.4.
 2023-03-21 12:31:34 +01:00
Ricardo Wurmus
4127151a5c
gnu: r-ggfortify: Update to 0.4.16. 
* gnu/packages/cran.scm (r-ggfortify): Update to 0.4.16.
 2023-03-21 12:31:34 +01:00
Ricardo Wurmus
1cea095e55
gnu: r-sf: Update to 1.0-12. 
* gnu/packages/cran.scm (r-sf): Update to 1.0-12.
 2023-03-21 12:31:34 +01:00
Ricardo Wurmus
395ef48520
gnu: r-glmmtmb: Update to 1.1.6. 
* gnu/packages/cran.scm (r-glmmtmb): Update to 1.1.6.
 2023-03-21 12:31:34 +01:00
Ricardo Wurmus
b98cd00976
gnu: r-fnn: Update to 1.1.3.2. 
* gnu/packages/cran.scm (r-fnn): Update to 1.1.3.2.
 2023-03-21 12:31:34 +01:00
Ricardo Wurmus
f91a6fb4da
gnu: r-truncnorm: Update to 1.0-9. 
* gnu/packages/cran.scm (r-truncnorm): Update to 1.0-9.
 2023-03-21 12:31:34 +01:00
Ricardo Wurmus
c23cc82f50
gnu: r-partykit: Update to 1.2-19. 
* gnu/packages/cran.scm (r-partykit): Update to 1.2-19.
 2023-03-21 12:31:34 +01:00
Ricardo Wurmus
766479ca25
gnu: r-nmf: Update to 0.26. 
* gnu/packages/bioconductor.scm (r-nmf): Update to 0.26.
 2023-03-21 12:31:30 +01:00
Pierre Neidhardt
088a3d4c34
gnu: sbcl-history-tree: Update to 0.1.1. 
* gnu/packages/lisp-xyz.scm (sbcl-history-tree): Update to 0.1.1.
 2023-03-21 10:04:55 +01:00
Ricardo Wurmus
326be9abff
gnu: r-singlecellexperiment: Update to 1.20.1. 
* gnu/packages/bioconductor.scm (r-singlecellexperiment): Update to 1.20.1.
 2023-03-21 09:36:15 +01:00
Ricardo Wurmus
fa048ce50e
gnu: r-variancepartition: Update to 1.28.9. 
* gnu/packages/bioconductor.scm (r-variancepartition): Update to 1.28.9.
 2023-03-21 09:36:15 +01:00
Ricardo Wurmus
481abed581
gnu: r-biocparallel: Update to 1.32.6. 
* gnu/packages/bioconductor.scm (r-biocparallel): Update to 1.32.6.
 2023-03-21 09:36:15 +01:00
Petr Hodina
ac6e5d5b80
gnu: Add mygnuhealth. 
* gnu/packages/medical.scm (mygnuhealth): New variable.

Signed-off-by: Maxim Cournoyer <maxim.cournoyer@gmail.com>
Co-authored-by: Morgan Smith <Morgan.J.Smith@outlook.com>
Modified-by: Maxim Cournoyer <maxim.cournoyer@gmail.com>
 2023-03-20 23:46:16 -04:00
Kaelyn Takata
b4fb941957
gnu: zabbix-agentd: Update to 6.0.14. 
* gnu/packages/monitoring.scm (zabbix-agentd): Update to 6.0.14.

Signed-off-by: Maxim Cournoyer <maxim.cournoyer@gmail.com>
 2023-03-20 23:10:15 -04:00
Simon South
e19d215ec9
gnu: tesseract-ocr: Use standard TESSDATA_PREFIX. 
* gnu/packages/ocr.scm (tesseract-ocr-tessdata-fast): Install data to
'share/tessdata' prefix rather than 'share/tesseract-ocr/tessdata'.
(tesseract-ocr) [arguments]: Delete adjust-TESSDATA_PREFIX-macro.
Adjust installation prefix in install-minimal-tessdata phase.
[native-search-paths]: Search for files under share/tessdata directly.

Signed-off-by: Maxim Cournoyer <maxim.cournoyer@gmail.com>
 2023-03-20 22:19:35 -04:00
Maxim Cournoyer
34e4761a0f
gnu: emacs-magit-gerrit: Update to 0.4-1.a975215. 
* gnu/packages/emacs-xyz.scm (emacs-magit-gerrit): Update to 0.4-1.a975215.
 2023-03-20 21:07:10 -04:00
Maxim Cournoyer
b019c16b03
gnu: emacs-magit: Update to 3.3.0-4.a760dd1. 
This update resolves a problem where configuring a remote would result in the
error "Symbol’s function definition is void:
transient--with-suspended-override".

* gnu/packages/emacs-xyz.scm (emacs-magit): Update to 3.3.0-4.a760dd1.
 2023-03-20 21:07:10 -04:00
Maxim Cournoyer
35dcd38fc3
gnu: emacs-transient: Update to 0.3.7-1.0ae0de4. 
* gnu/packages/emacs-xyz.scm (emacs-transient): Update to 0.3.7-1.0ae0de4.
[propagated-inputs]: Remove emacs-dash; add emacs-compat.
 2023-03-20 21:07:09 -04:00
Ricardo Wurmus
d2ae00530b
gnu: lepton-eda: Update to 1.9.18-20220529. 
* gnu/packages/engineering.scm (lepton-eda): Update to 1.9.18-20220529.
[inputs]: Add guile-readline.
[arguments]: Adjust build phase 'fix-dynamic-link; add build phase 'fix-tests.
 2023-03-21 00:02:59 +01:00
Ricardo Wurmus
fa0c6defeb
gnu: Add ctrlr. 
* gnu/packages/music.scm (ctrlr): New variable.
 2023-03-21 00:02:59 +01:00
Andreas Enge
30f4b3a7e8
gnu: openjdk10: Apply patch again. 
This partially reverts commit 7636c49b45
where the patch was dropped.

* gnu/packages/java.scm (openjdk10)[source]: Apply patch.
 2023-03-20 19:00:02 +01:00
Mădălin Ionel Patrașcu
2336d5f57a
gnu: Add r-annotationhubdata. 
* gnu/packages/bioconductor.scm (r-annotationhubdata): New variable.

Co-authored-by: Ricardo Wurmus <rekado@elephly.net>
 2023-03-20 18:25:10 +01:00
Mădălin Ionel Patrașcu
40b79eafee
gnu: Add r-affylmgui. 
* gnu/packages/bioconductor.scm (r-affylmgui): New variable.
 2023-03-20 18:25:10 +01:00
Mădălin Ionel Patrașcu
628c22ec9e
gnu: Add r-tkrplot. 
* gnu/packages/cran.scm (r-tkrplot): New variable.

Co-authored-by: Ricardo Wurmus <rekado@elephly.net>.
 2023-03-20 18:25:10 +01:00
Mădălin Ionel Patrașcu
9f09ac6b21
gnu: Add r-affyplm. 
* gnu/packages/bioconductor.scm (r-affyplm): New variable.
 2023-03-20 18:25:10 +01:00
Mădălin Ionel Patrașcu
284b5eca60
gnu: Add r-affyilm. 
* gnu/packages/bioconductor.scm (r-affyilm): New variable.
 2023-03-20 18:25:10 +01:00
Efraim Flashner
f80215c7c4
gnu: python-google-api-client: Update to 1.12.8. 
* gnu/packages/python-web.scm (python-google-api-client): Update to
1.12.8.
[arguments]: Remove custom phase to adjust setup.py.
[native-inputs]: Remove python-oauth2client, python-uritemplate. Move
python-httplib2, python-six ...
[propagated-inputs]: ... here. Add python-google-api-core-1,
python-google-auth-1, python-google-auth-httplib2, python-uritemplate-3.
 2023-03-20 18:27:45 +02:00
Efraim Flashner
f541989f95
gnu: python-googleapis-common-protos: Update to 1.56.4. 
* gnu/packages/python-web.scm (python-googleapis-common-protos): Update
to 1.56.4.
[arguments]: Enable test suite.
 2023-03-20 18:27:44 +02:00
Efraim Flashner
86f1a3643e
gnu: Add python-google-api-core-1. 
* gnu/packages/python-web.scm (python-google-api-core-1): New variable.
 2023-03-20 18:27:44 +02:00
Efraim Flashner
e0deaf0a85
gnu: Add python-google-auth-1. 
* gnu/packages/python-web.scm (python-google-auth-1): New variable.
 2023-03-20 18:27:44 +02:00
Efraim Flashner
a39aac3352
gnu: Add python-google-auth-httplib2. 
* gnu/packages/python-web.scm (python-google-auth-httplib2): New
variable.
 2023-03-20 18:27:44 +02:00
Efraim Flashner
6ec585fb3e
gnu: Add python-uritemplate-3. 
* gnu/packages/python-web.scm (python-uritemplate-3): New variable.
 2023-03-20 18:27:43 +02:00
Efraim Flashner
0f4800e93a
gnu: python-httplib2: Update to 0.15.0. 
* gnu/packages/python-web.scm (python-httplib2): Update to 0.15.0.
[source]: Download using git.
[arguments]: Add a phase to adjust the test package version
requirements.
[native-inputs]: Add python-flake8, python-future, python-mock,
python-pytest, python-pytest-cov, python-pytest-forked,
python-pytest-randomly, python-pytest-timeout, python-pytest-xdist,
python-six.
[home-page]: Switch to new upstream homepage.
 2023-03-20 18:27:43 +02:00
Efraim Flashner
9d93c0c789
gnu: zig: Increase max-silent-time. 
* gnu/packages/zig.scm (zig-0.10)[properties]: Set max-silent-time to 3
hours.
 2023-03-20 18:27:40 +02:00
Ricardo Wurmus
5dcbe80da8
gnu: Add transanno. 
* gnu/packages/bioinformatics.scm (transanno): New variable.
 2023-03-20 17:22:33 +01:00
Ricardo Wurmus
6a1638fe97
gnu: Add rust-autocompress-0.2. 
* gnu/packages/crates-io.scm (rust-autocompress-0.2): New variable.
 2023-03-20 17:22:33 +01:00
Ricardo Wurmus
cc2f5cd998
gnu: Add rust-temp-testdir-0.2. 
* gnu/packages/crates-io.scm (rust-temp-testdir-0.2): New variable.
 2023-03-20 17:22:33 +01:00
Ricardo Wurmus
50e63a675b
gnu: Add rust-bio-0.41. 
* gnu/packages/crates-io.scm (rust-bio-0.41): New variable.
 2023-03-20 17:22:33 +01:00
Maxim Cournoyer
45fd01ac5d
gnu: ruby-rugged: Update to 1.6.2-0.6379f23 and enable tests. 
* gnu/packages/ruby.scm (ruby-rugged): Update to 1.6.2-0.6379f23.
[source]: Fetch via git.
[arguments]: Enable tests.  Add #:phases.
[native-inputs]: Add git-minimal/pinned.  Remove ruby-minitest and ruby-pry.
 2023-03-20 11:12:18 -04:00
Maxim Cournoyer
008a2f1803
gnu: python-django-rq: Update to 2.7.0. 
* gnu/packages/django.scm (python-django-rq): Update to 2.7.0.
[arguments]: Replace django-admin.py with django-admin in check phase.
 2023-03-20 08:38:20 -04:00
Maxim Cournoyer
10d5535c78
gnu: python-aioredis: Deprecate by python-redis. 
* gnu/packages/databases.scm (python-aioredis): Mark as deprecated by
python-redis.
 2023-03-20 08:38:19 -04:00
Maxim Cournoyer
c3b110b27a
gnu: python-fakeredis: Update to 2.10.1 and enable tests. 
* gnu/packages/databases.scm (python-fakeredis): Update to 2.10.1.
[source]: Fetch via git.
[build-system]: Use pyproject-build-system.
[arguments]: Enable tests.  Add #:phases.
[native-inputs]: New field.
[propagated-inputs]: Remove python-aioredis and python-packaging.
[home-page]: Update URL.
 2023-03-20 08:38:19 -04:00
Maxim Cournoyer
1a902eb21a
gnu: python-redis: Update to 4.5.2 and enable tests. 
* gnu/packages/databases.scm (python-redis): Update to 4.5.2.
[source]: Fetch from git.
[build-system]: Use pyproject-build-system.
[arguments]: Enable tests.  Add #:test-flags and #:phases.
[native-inputs]: Add field.
[propagated-inputs]: Add field.
[home-page]: Update URL.
 2023-03-20 08:38:07 -04:00
Maxim Cournoyer
20fa738123
gnu: python-hiredis: Update to 2.2.2 and enable tests. 
* gnu/packages/databases.scm (python-hiredis): Update to 2.2.2.
[source]: Fetch via git and apply patches.
[build-system]: Use pyproject-build-system.
[arguments]: Enable tests.  Add #:phases.
[native-inputs]: New field.
[inputs]: Likewise.
* gnu/packages/patches/python-hiredis-fix-header.patch: New file.
* gnu/packages/patches/python-hiredis-use-system-hiredis.patch: Likewise.
* gnu/local.mk (dist_patch_DATA): Register them.
 2023-03-20 08:32:32 -04:00
Maxim Cournoyer
9956638943
gnu: hiredis: Update to 1.1.0. 
* gnu/packages/databases.scm (hiredis): Update to 1.1.0.
 2023-03-20 08:32:32 -04:00
Maxim Cournoyer
4413b09fa3
gnu: redis: Use gexps and streamline. 
* gnu/packages/databases.scm (redis) [arguments]: Merge the use-correct-tclsh
into the patch-paths phase.  Use 'which' instead of assoc-ref.  Move
the #:make-flags argument before the #:phases one.  Use cc-for-target as the
value of the CC make flag.
[native-inputs]: Move field below arguments.
 2023-03-20 08:32:31 -04:00
Maxim Cournoyer
458b791f35
gnu: redis: Update to 7.0.9 [security fixes]. 
Fixes CVE-2023-25155, CVE-2022-36021 and more; see
https://raw.githubusercontent.com/redis/redis/7.0/00-RELEASENOTES.

* gnu/packages/databases.scm (redis): Update to 7.0.9.
[native-inputs]: Add pkg-config and which.
[arguments]: Add a patch-paths phase.  Skip the AOF-related tests.
[properties]: Add a lint-hidden-cve property.
 2023-03-20 08:32:31 -04:00
Andrew Tropin
3a2200e1ad
services: network-manager: Add missing shadowing of 'iwd?' field. 
* gnu/services/networking.scm (network-manager-shepherd-service): Add missing
shadowing of 'iwd?' field by using let* instead of let.
 2023-03-20 12:08:36 +04:00
Sergey Trofimov
1f36534c7e
home: 'home-environment-with-provenance' uses the HE location info. 
* gnu/home.scm (home-environment-with-provenance): Make `config-file`
optional, with the default taken from the HE location info.

Signed-off-by: Andrew Tropin <andrew@trop.in>
 2023-03-20 09:14:23 +04:00
conses
d429ff12e5
gnu: emacs-eshell-syntax-highlighting: Update to 0.3-0.1ba39a9. 
* gnu/packages/emacs-xyz.scm (emacs-eshell-syntax-highlighting): Update to
0.3-0.1ba39a9.

Signed-off-by: Andrew Tropin <andrew@trop.in>
 2023-03-20 09:11:04 +04:00
Andrew Tropin
8f5f505d90
gnu: Add emacs-geiser-eros. 
* gnu/packages/emacs-xyz.scm (emacs-geiser-eros): New variable.
 2023-03-20 09:10:37 +04:00
Leo Famulari
80d31a7478
gnu: linux-libre: Update kernel configs for 6.2.7. 
* gnu/packages/aux-files/linux-libre/6.2-arm.conf,
gnu/packages/aux-files/linux-libre/6.2-arm64.conf,
gnu/packages/aux-files/linux-libre/6.2-i686.conf,
gnu/packages/aux-files/linux-libre/6.2-x86_64.conf: Set some new configuration
options.
 2023-03-19 18:01:00 -04:00
Leo Famulari
90c8f62328
gnu: linux-libre 4.14: Update to 4.14.310. 
* gnu/packages/linux.scm (linux-libre-4.14-version): Update to 4.14.310.
(linux-libre-4.14-pristine-source, deblob-scripts-4.14): Update hashes.
 2023-03-19 18:00:59 -04:00
Leo Famulari
5617381fc1
gnu: linux-libre 4.19: Update to 4.19.278. 
* gnu/packages/linux.scm (linux-libre-4.19-version): Update to 4.19.278.
(linux-libre-4.19-pristine-source, deblob-scripts-4.19): Update hashes.
 2023-03-19 18:00:59 -04:00
Leo Famulari
fed3cf520e
gnu: linux-libre 5.4: Update to 5.4.237. 
* gnu/packages/linux.scm (linux-libre-5.4-version): Update to 5.4.237.
(linux-libre-5.4-pristine-source, deblob-scripts-5.4): Update hashes.
 2023-03-19 18:00:59 -04:00
Leo Famulari
400cb5cf58
gnu: linux-libre 5.10: Update to 5.10.175. 
* gnu/packages/linux.scm (linux-libre-5.10-version): Update to 5.10.175.
(linux-libre-5.10-pristine-source, deblob-scripts-5.10): Update hashes.
 2023-03-19 18:00:59 -04:00
Leo Famulari
fccf2b2fb5
gnu: linux-libre 5.15: Update to 5.15.103. 
* gnu/packages/linux.scm (linux-libre-5.15-version): Update to 5.15.103.
(linux-libre-5.15-pristine-source, deblob-scripts-5.15): Update hashes.
 2023-03-19 18:00:58 -04:00
Leo Famulari
d683261b23
gnu: linux-libre 6.1: Update to 6.1.20. 
* gnu/packages/linux.scm (linux-libre-6.1-version): Update to 6.1.20.
(linux-libre-6.1-pristine-source, deblob-scripts-6.1): Update hashes.
 2023-03-19 18:00:58 -04:00
Leo Famulari
0824203a22
gnu: linux-libre: Update to 6.2.7. 
* gnu/packages/linux.scm (linux-libre-6.2-version): Update to 6.2.7.
(linux-libre-6.2-pristine-source, deblob-scripts-6.2): Update hashes.
 2023-03-19 18:00:58 -04:00
Yovan Naumovski
65587224cd
gnu: atop: Update to 2.8.1. 
* gnu/packages/admin.scm (atop): Update to 2.8.1.

Signed-off-by: Leo Famulari <leo@famulari.name>
 2023-03-19 16:55:52 -04:00
Ricardo Wurmus
896c2a0c45
gnu: r-flexmix: Update to 2.3-19. 
* gnu/packages/statistics.scm (r-flexmix): Update to 2.3-19.
 2023-03-19 21:01:39 +01:00
Ricardo Wurmus
83978be759
gnu: r-xml: Update to 3.99-0.14. 
* gnu/packages/statistics.scm (r-xml): Update to 3.99-0.14.
 2023-03-19 21:01:39 +01:00
Ricardo Wurmus
8cf778103e
gnu: r-blob: Update to 1.2.4. 
* gnu/packages/statistics.scm (r-blob): Update to 1.2.4.
 2023-03-19 21:01:39 +01:00
Ricardo Wurmus
4532e7f415
gnu: r-gtable: Update to 0.3.2. 
* gnu/packages/statistics.scm (r-gtable): Update to 0.3.2.
[propagated-inputs]: Add r-cli, r-glue, r-lifecycle, and r-rlang.
 2023-03-19 21:01:39 +01:00
Ricardo Wurmus
157733c8f2
gnu: r-commonmark: Update to 1.9.0. 
* gnu/packages/statistics.scm (r-commonmark): Update to 1.9.0.
 2023-03-19 21:01:39 +01:00
Ricardo Wurmus
f4a0f04cc3
gnu: r-qpdf: Update to 1.3.2. 
* gnu/packages/cran.scm (r-qpdf): Update to 1.3.2.
 2023-03-19 21:01:39 +01:00
Ricardo Wurmus
4def53a3fc
gnu: r-mlr3: Update to 0.15.0. 
* gnu/packages/cran.scm (r-mlr3): Update to 0.15.0.
 2023-03-19 21:01:38 +01:00
Ricardo Wurmus
bd266c08b8
gnu: r-paradox: Update to 0.11.1. 
* gnu/packages/cran.scm (r-paradox): Update to 0.11.1.
 2023-03-19 21:01:38 +01:00
Ricardo Wurmus
cdc5dae016
gnu: r-anndata: Update to 0.7.5.6. 
* gnu/packages/cran.scm (r-anndata): Update to 0.7.5.6.
 2023-03-19 21:01:38 +01:00
Ricardo Wurmus
f2a67431f9
gnu: r-wk: Update to 0.7.2. 
* gnu/packages/cran.scm (r-wk): Update to 0.7.2.
 2023-03-19 21:01:38 +01:00
Ricardo Wurmus
8ab5665bfd
gnu: r-insight: Update to 0.19.1. 
* gnu/packages/cran.scm (r-insight): Update to 0.19.1.
 2023-03-19 21:01:37 +01:00
Ricardo Wurmus
4f4817e0f0
gnu: r-learnr: Update to 0.11.3. 
* gnu/packages/cran.scm (r-learnr): Update to 0.11.3.
 2023-03-19 21:01:37 +01:00
Ricardo Wurmus
f39d04ab93
gnu: r-renv: Update to 0.17.2. 
* gnu/packages/cran.scm (r-renv): Update to 0.17.2.
 2023-03-19 21:01:37 +01:00
Ricardo Wurmus
aea6e0ac39
gnu: r-vctrs: Update to 0.6.0. 
* gnu/packages/cran.scm (r-vctrs): Update to 0.6.0.
 2023-03-19 21:01:37 +01:00
Ricardo Wurmus
911d141c0c
gnu: r-psych: Update to 2.3.3. 
* gnu/packages/cran.scm (r-psych): Update to 2.3.3.
 2023-03-19 21:01:37 +01:00
Ricardo Wurmus
12ea308ad9
gnu: r-rmpi: Update to 0.7-1. 
* gnu/packages/cran.scm (r-rmpi): Update to 0.7-1.
 2023-03-19 21:01:36 +01:00
Ricardo Wurmus
bcb059801d
gnu: r-htmlwidgets: Update to 1.6.2. 
* gnu/packages/cran.scm (r-htmlwidgets): Update to 1.6.2.
 2023-03-19 21:01:36 +01:00
Ricardo Wurmus
ac3c9b4344
gnu: r-servr: Update to 0.26. 
* gnu/packages/cran.scm (r-servr): Update to 0.26.
 2023-03-19 21:01:36 +01:00
Ricardo Wurmus
476f987f48
gnu: r-bestnormalize: Update to 1.9.0. 
* gnu/packages/cran.scm (r-bestnormalize): Update to 1.9.0.
[propagated-inputs]: Add r-generics.
 2023-03-19 21:01:30 +01:00
Ricardo Wurmus
e9c8c01e24
gnu: r-desctools: Update to 0.99.48. 
* gnu/packages/statistics.scm (r-desctools): Update to 0.99.48.
[native-inputs]: Add r-r-rsp.
 2023-03-19 16:11:58 +01:00
Ricardo Wurmus
675be97376
gnu: r-lubridate: Update to 1.9.2. 
* gnu/packages/statistics.scm (r-lubridate): Update to 1.9.2.
 2023-03-19 16:11:58 +01:00
Ricardo Wurmus
7eb5c642d3
gnu: r-lme4: Update to 1.1-32. 
* gnu/packages/statistics.scm (r-lme4): Update to 1.1-32.
 2023-03-19 16:11:58 +01:00
Ricardo Wurmus
e2f20d9309
gnu: r-vgam: Update to 1.1-8. 
* gnu/packages/statistics.scm (r-vgam): Update to 1.1-8.
 2023-03-19 16:11:58 +01:00
Ricardo Wurmus
8a52db6989
gnu: r-hmisc: Update to 5.0-1. 
* gnu/packages/statistics.scm (r-hmisc): Update to 5.0-1.
[propagated-inputs]: Remove r-lattice, r-latticeextra, and r-survival; add r-colorspace,
r-knitr, and r-rmarkdown.
 2023-03-19 16:11:58 +01:00
Ricardo Wurmus
843e4cc583
gnu: r-pkgmaker: Update to 0.32.8. 
* gnu/packages/statistics.scm (r-pkgmaker): Update to 0.32.8.
 2023-03-19 16:11:58 +01:00
Ricardo Wurmus
3d4dd58647
gnu: r-rsqlite: Update to 2.3.0. 
* gnu/packages/statistics.scm (r-rsqlite): Update to 2.3.0.
[propagated-inputs]: Remove r-rcpp; add r-cpp11.
 2023-03-19 16:11:58 +01:00
Ricardo Wurmus
36c8d51d14
gnu: r-rcpparmadillo: Update to 0.12.0.1.0. 
* gnu/packages/statistics.scm (r-rcpparmadillo): Update to 0.12.0.1.0.
 2023-03-19 16:11:58 +01:00
Ricardo Wurmus
d90503f84f
gnu: r-readr: Update to 2.1.4. 
* gnu/packages/statistics.scm (r-readr): Update to 2.1.4.
 2023-03-19 16:11:58 +01:00
Ricardo Wurmus
4fbee041a9
gnu: r-httr: Update to 1.4.5. 
* gnu/packages/statistics.scm (r-httr): Update to 1.4.5.
 2023-03-19 16:11:58 +01:00
Ricardo Wurmus
ceb2a75dda
gnu: r-openssl: Update to 2.0.6. 
* gnu/packages/statistics.scm (r-openssl): Update to 2.0.6.
 2023-03-19 16:11:58 +01:00
Ricardo Wurmus
57f8e9fc3d
gnu: r-data-table: Update to 1.14.8. 
* gnu/packages/statistics.scm (r-data-table): Update to 1.14.8.
 2023-03-19 16:11:58 +01:00
Ricardo Wurmus
73fc67e13e
gnu: r-chron: Update to 2.3-60. 
* gnu/packages/statistics.scm (r-chron): Update to 2.3-60.
 2023-03-19 16:11:58 +01:00
Ricardo Wurmus
8e17a0412b
gnu: r-formula: Update to 1.2-5. 
* gnu/packages/statistics.scm (r-formula): Update to 1.2-5.
 2023-03-19 16:11:58 +01:00
Ricardo Wurmus
ded63ea3ab
gnu: r-dbplyr: Update to 2.3.1. 
* gnu/packages/statistics.scm (r-dbplyr): Update to 2.3.1.
[propagated-inputs]: Remove r-assertthat; add r-tidyr.
 2023-03-19 16:11:58 +01:00
Ricardo Wurmus
62b1347bf9
gnu: r-tibble: Update to 3.2.0. 
* gnu/packages/statistics.scm (r-tibble): Update to 3.2.0.
 2023-03-19 16:11:57 +01:00
Ricardo Wurmus
770c054345
gnu: r-rlang: Update to 1.1.0. 
* gnu/packages/statistics.scm (r-rlang): Update to 1.1.0.
 2023-03-19 16:11:57 +01:00
Ricardo Wurmus
6e29e15b25
gnu: r-testthat: Update to 3.1.7. 
* gnu/packages/statistics.scm (r-testthat): Update to 3.1.7.
 2023-03-19 16:11:57 +01:00
Ricardo Wurmus
8a7eb44065
gnu: r-gdtools: Update to 0.3.2. 
* gnu/packages/statistics.scm (r-gdtools): Update to 0.3.2.
[inputs]: Remove zlib.
[propagated-inputs]: Add r-curl and r-fontquiver.
 2023-03-19 16:11:57 +01:00
Ricardo Wurmus
b6776e8f57
gnu: r-ggplot2: Update to 3.4.1. 
* gnu/packages/statistics.scm (r-ggplot2): Update to 3.4.1.
[propagated-inputs]: Remove r-digest.
 2023-03-19 16:11:57 +01:00