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72628 Commits

Author SHA1 Message Date
Ricardo Wurmus
d6a3debb6d
gnu: r-multtest: Update to 2.50.0. 
* gnu/packages/bioconductor.scm (r-multtest): Update to 2.50.0.
 2021-11-07 22:34:42 +00:00
Ricardo Wurmus
8826132332
gnu: r-mbkmeans: Update to 1.10.0. 
* gnu/packages/bioconductor.scm (r-mbkmeans): Update to 1.10.0.
 2021-11-07 22:34:42 +00:00
Ricardo Wurmus
6f6478b175
gnu: r-diffbind: Update to 3.4.0. 
* gnu/packages/bioconductor.scm (r-diffbind): Update to 3.4.0.
 2021-11-07 22:34:42 +00:00
Ricardo Wurmus
d05485f7f7
gnu: r-greylistchip: Update to 1.26.0. 
* gnu/packages/bioconductor.scm (r-greylistchip): Update to 1.26.0.
 2021-11-07 22:34:42 +00:00
Ricardo Wurmus
88c203a85f
gnu: r-apeglm: Update to 1.16.0. 
* gnu/packages/bioconductor.scm (r-apeglm): Update to 1.16.0.
 2021-11-07 22:34:42 +00:00
Ricardo Wurmus
c6c1f9fc72
gnu: r-qvalue: Update to 2.26.0. 
* gnu/packages/bioconductor.scm (r-qvalue): Update to 2.26.0.
 2021-11-07 22:34:42 +00:00
Ricardo Wurmus
980a36cbee
gnu: r-oligo: Update to 1.58.0. 
* gnu/packages/bioconductor.scm (r-oligo): Update to 1.58.0.
 2021-11-07 22:34:42 +00:00
Ricardo Wurmus
0cffd15771
gnu: r-oligoclasses: Update to 1.56.0. 
* gnu/packages/bioconductor.scm (r-oligoclasses): Update to 1.56.0.
 2021-11-07 22:34:41 +00:00
Ricardo Wurmus
319038ace3
gnu: r-geneplotter: Update to 1.72.0. 
* gnu/packages/bioconductor.scm (r-geneplotter): Update to 1.72.0.
 2021-11-07 22:34:41 +00:00
Ricardo Wurmus
c3a3c417c0
gnu: r-zlibbioc: Update to 1.40.0. 
* gnu/packages/bioconductor.scm (r-zlibbioc): Update to 1.40.0.
 2021-11-07 22:34:41 +00:00
Ricardo Wurmus
469cf86fa2
gnu: r-xvector: Update to 0.34.0. 
* gnu/packages/bioconductor.scm (r-xvector): Update to 0.34.0.
 2021-11-07 22:34:41 +00:00
Ricardo Wurmus
0b341967e3
gnu: r-vsn: Update to 3.62.0. 
* gnu/packages/bioconductor.scm (r-vsn): Update to 3.62.0.
 2021-11-07 22:34:41 +00:00
Ricardo Wurmus
e174313541
gnu: r-variantannotation: Update to 1.40.0. 
* gnu/packages/bioconductor.scm (r-variantannotation): Update to 1.40.0.
 2021-11-07 22:34:41 +00:00
Ricardo Wurmus
47c3ec038e
gnu: r-tximport: Update to 1.22.0. 
* gnu/packages/bioconductor.scm (r-tximport): Update to 1.22.0.
 2021-11-07 22:34:41 +00:00
Ricardo Wurmus
bb69853f89
gnu: r-topgo: Update to 2.46.0. 
* gnu/packages/bioconductor.scm (r-topgo): Update to 2.46.0.
 2021-11-07 22:34:41 +00:00
Ricardo Wurmus
442a355026
gnu: r-systempiper: Update to 2.0.0. 
* gnu/packages/bioconductor.scm (r-systempiper): Update to 2.0.0.
[propagated-inputs]: Remove r-annotate, r-assertthat, r-batchtools, r-deseq2, r-dot,
r-edger, r-genomicfeatures, r-go-db, r-gostats, r-iranges, r-limma,
r-pheatmap, r-rjson, r-rsvg, r-testthat, and r-variantannotation; add
r-biocgenerics and r-htmlwidgets.
 2021-11-07 22:34:41 +00:00
Ricardo Wurmus
c3d9b4b097
gnu: r-sva: Update to 3.42.0. 
* gnu/packages/bioconductor.scm (r-sva): Update to 3.42.0.
 2021-11-07 22:34:41 +00:00
Ricardo Wurmus
679abce085
gnu: r-summarizedexperiment: Update to 1.24.0. 
* gnu/packages/bioconductor.scm (r-summarizedexperiment): Update to 1.24.0.
 2021-11-07 22:34:41 +00:00
Ricardo Wurmus
2a3f2f002e
gnu: r-structuralvariantannotation: Update to 1.10.0. 
* gnu/packages/bioconductor.scm (r-structuralvariantannotation): Update to 1.10.0.
 2021-11-07 22:34:41 +00:00
Ricardo Wurmus
41e1bf39aa
gnu: r-slingshot: Update to 2.2.0. 
* gnu/packages/bioconductor.scm (r-slingshot): Update to 2.2.0.
 2021-11-07 22:34:41 +00:00
Ricardo Wurmus
91c78f9527
gnu: r-trajectoryutils: Update to 1.2.0. 
* gnu/packages/bioconductor.scm (r-trajectoryutils): Update to 1.2.0.
 2021-11-07 22:34:41 +00:00
Ricardo Wurmus
9398e3e047
gnu: r-simplifyenrichment: Update to 1.4.0. 
* gnu/packages/bioconductor.scm (r-simplifyenrichment): Update to 1.4.0.
 2021-11-07 22:34:41 +00:00
Ricardo Wurmus
bf90dbefcc
gnu: r-shortread: Update to 1.52.0. 
* gnu/packages/bioconductor.scm (r-shortread): Update to 1.52.0.
 2021-11-07 22:34:40 +00:00
Ricardo Wurmus
f1dedc13dc
gnu: r-seqpattern: Update to 1.26.0. 
* gnu/packages/bioconductor.scm (r-seqpattern): Update to 1.26.0.
 2021-11-07 22:34:40 +00:00
Ricardo Wurmus
09d921d442
gnu: r-seqlogo: Update to 1.60.0. 
* gnu/packages/bioconductor.scm (r-seqlogo): Update to 1.60.0.
 2021-11-07 22:34:40 +00:00
Ricardo Wurmus
d076801410
gnu: r-rtracklayer: Update to 1.54.0. 
* gnu/packages/bioconductor.scm (r-rtracklayer): Update to 1.54.0.
 2021-11-07 22:34:40 +00:00
Ricardo Wurmus
f0774df7c1
gnu: r-rsamtools: Update to 2.10.0. 
* gnu/packages/bioconductor.scm (r-rsamtools): Update to 2.10.0.
 2021-11-07 22:34:40 +00:00
Ricardo Wurmus
e38d619476
gnu: r-rhdf5filters: Update to 1.6.0. 
* gnu/packages/bioconductor.scm (r-rhdf5filters): Update to 1.6.0.
 2021-11-07 22:34:40 +00:00
Ricardo Wurmus
148e520d4a
gnu: r-rhdf5: Update to 2.38.0. 
* gnu/packages/bioconductor.scm (r-rhdf5): Update to 2.38.0.
 2021-11-07 22:34:40 +00:00
Ricardo Wurmus
559953466e
gnu: r-reportingtools: Update to 2.34.0. 
* gnu/packages/bioconductor.scm (r-reportingtools): Update to 2.34.0.
 2021-11-07 22:34:40 +00:00
Ricardo Wurmus
cbf8dbc3cb
gnu: r-regioner: Update to 1.26.0. 
* gnu/packages/bioconductor.scm (r-regioner): Update to 1.26.0.
 2021-11-07 22:34:40 +00:00
Ricardo Wurmus
c4908b9eff
gnu: r-rcas: Update to 1.20.0. 
* gnu/packages/bioconductor.scm (r-rcas): Update to 1.20.0.
 2021-11-07 22:34:40 +00:00
Ricardo Wurmus
3caf93321d
gnu: r-rbgl: Update to 1.70.0. 
* gnu/packages/bioconductor.scm (r-rbgl): Update to 1.70.0.
 2021-11-07 22:34:40 +00:00
Ricardo Wurmus
dc4cc2aa32
gnu: r-protgenerics: Update to 1.26.0. 
* gnu/packages/bioconductor.scm (r-protgenerics): Update to 1.26.0.
 2021-11-07 22:34:40 +00:00
Ricardo Wurmus
78fd768566
gnu: r-pcamethods: Update to 1.86.0. 
* gnu/packages/bioconductor.scm (r-pcamethods): Update to 1.86.0.
 2021-11-07 22:34:40 +00:00
Ricardo Wurmus
ada8646a38
gnu: r-organismdbi: Update to 1.36.0. 
* gnu/packages/bioconductor.scm (r-organismdbi): Update to 1.36.0.
 2021-11-07 22:34:40 +00:00
Ricardo Wurmus
3de4beb013
gnu: r-mzr: Update to 2.28.0. 
* gnu/packages/bioconductor.scm (r-mzr): Update to 2.28.0.
 2021-11-07 22:34:39 +00:00
Ricardo Wurmus
62d157a2e2
gnu: r-mzid: Update to 1.32.0. 
* gnu/packages/bioconductor.scm (r-mzid): Update to 1.32.0.
 2021-11-07 22:34:39 +00:00
Ricardo Wurmus
a6402a7fee
gnu: r-msnid: Update to 1.28.0. 
* gnu/packages/bioconductor.scm (r-msnid): Update to 1.28.0.
 2021-11-07 22:34:39 +00:00
Ricardo Wurmus
35e1bdc5b8
gnu: r-msnbase: Update to 2.20.0. 
* gnu/packages/bioconductor.scm (r-msnbase): Update to 2.20.0.
 2021-11-07 22:34:39 +00:00
Ricardo Wurmus
b96f76aff0
gnu: r-mutationalpatterns: Update to 3.4.0. 
* gnu/packages/bioconductor.scm (r-mutationalpatterns): Update to 3.4.0.
[propagated-inputs]: Add r-rcolorbrewer.
 2021-11-07 22:34:39 +00:00
Ricardo Wurmus
d4a0101ad9
gnu: r-methylkit: Update to 1.20.0. 
* gnu/packages/bioconductor.scm (r-methylkit): Update to 1.20.0.
 2021-11-07 22:34:39 +00:00
Ricardo Wurmus
0465cc8251
gnu: r-limma: Update to 3.50.0. 
* gnu/packages/bioconductor.scm (r-limma): Update to 3.50.0.
 2021-11-07 22:34:39 +00:00
Ricardo Wurmus
a0cc78a554
gnu: r-keggrest: Update to 1.34.0. 
* gnu/packages/bioconductor.scm (r-keggrest): Update to 1.34.0.
 2021-11-07 22:34:39 +00:00
Ricardo Wurmus
1fa012822d
gnu: r-interactivedisplaybase: Update to 1.32.0. 
* gnu/packages/bioconductor.scm (r-interactivedisplaybase): Update to 1.32.0.
 2021-11-07 22:34:39 +00:00
Ricardo Wurmus
b6bd74cefb
gnu: r-impute: Update to 1.68.0. 
* gnu/packages/bioconductor.scm (r-impute): Update to 1.68.0.
 2021-11-07 22:34:39 +00:00
Ricardo Wurmus
eeeb38d569
gnu: r-rhtslib: Update to 1.26.0. 
* gnu/packages/bioconductor.scm (r-rhtslib): Update to 1.26.0.
 2021-11-07 22:34:39 +00:00
Ricardo Wurmus
bcd10420cc
gnu: r-hpar: Update to 1.36.0. 
* gnu/packages/bioconductor.scm (r-hpar): Update to 1.36.0.
 2021-11-07 22:34:39 +00:00
Ricardo Wurmus
df5553ee14
gnu: r-gseabase: Update to 1.56.0. 
* gnu/packages/bioconductor.scm (r-gseabase): Update to 1.56.0.
 2021-11-07 22:34:39 +00:00
Ricardo Wurmus
8148c6ba72
gnu: r-gostats: Update to 2.60.0. 
* gnu/packages/bioconductor.scm (r-gostats): Update to 2.60.0.
 2021-11-07 22:34:39 +00:00
Ricardo Wurmus
98c8e7f735
gnu: r-genomicranges: Update to 1.46.0. 
* gnu/packages/bioconductor.scm (r-genomicranges): Update to 1.46.0.
 2021-11-07 22:34:39 +00:00
Ricardo Wurmus
36ea351603
gnu: r-genomicfiles: Update to 1.30.0. 
* gnu/packages/bioconductor.scm (r-genomicfiles): Update to 1.30.0.
 2021-11-07 22:34:38 +00:00
Ricardo Wurmus
60d5b89717
gnu: r-genomicfeatures: Update to 1.46.1. 
* gnu/packages/bioconductor.scm (r-genomicfeatures): Update to 1.46.1.
 2021-11-07 22:34:38 +00:00
Ricardo Wurmus
f599ef1cc4
gnu: r-genomicalignments: Update to 1.30.0. 
* gnu/packages/bioconductor.scm (r-genomicalignments): Update to 1.30.0.
 2021-11-07 22:34:38 +00:00
Ricardo Wurmus
9122892ec9
gnu: r-genomeinfodb: Update to 1.30.0. 
* gnu/packages/bioconductor.scm (r-genomeinfodb): Update to 1.30.0.
 2021-11-07 22:34:38 +00:00
Ricardo Wurmus
251e6950d8
gnu: r-genomation: Update to 1.26.0. 
* gnu/packages/bioconductor.scm (r-genomation): Update to 1.26.0.
 2021-11-07 22:34:38 +00:00
Ricardo Wurmus
38d13a6747
gnu: r-geneoverlap: Update to 1.30.0. 
* gnu/packages/bioconductor.scm (r-geneoverlap): Update to 1.30.0.
 2021-11-07 22:34:38 +00:00
Ricardo Wurmus
7e80f6fb57
gnu: r-genefilter: Update to 1.76.0. 
* gnu/packages/bioconductor.scm (r-genefilter): Update to 1.76.0.
 2021-11-07 22:34:38 +00:00
Ricardo Wurmus
3a2cab95b1
gnu: r-gage: Update to 2.44.0. 
* gnu/packages/bioconductor.scm (r-gage): Update to 2.44.0.
 2021-11-07 22:34:38 +00:00
Ricardo Wurmus
309e04ba18
gnu: r-fastseg: Update to 1.40.0. 
* gnu/packages/bioconductor.scm (r-fastseg): Update to 1.40.0.
 2021-11-07 22:34:38 +00:00
Ricardo Wurmus
7973617595
gnu: r-ensembldb: Update to 2.18.0. 
* gnu/packages/bioconductor.scm (r-ensembldb): Update to 2.18.0.
 2021-11-07 22:34:38 +00:00
Ricardo Wurmus
46663d5769
gnu: r-edger: Update to 3.36.0. 
* gnu/packages/bioconductor.scm (r-edger): Update to 3.36.0.
 2021-11-07 22:34:38 +00:00
Ricardo Wurmus
933366ffe7
gnu: r-edaseq: Update to 2.28.0. 
* gnu/packages/bioconductor.scm (r-edaseq): Update to 2.28.0.
 2021-11-07 22:34:38 +00:00
Ricardo Wurmus
de8089a767
gnu: r-dirichletmultinomial: Update to 1.36.0. 
* gnu/packages/bioconductor.scm (r-dirichletmultinomial): Update to 1.36.0.
 2021-11-07 22:34:38 +00:00
Ricardo Wurmus
cb87707987
gnu: r-dexseq: Update to 1.40.0. 
* gnu/packages/bioconductor.scm (r-dexseq): Update to 1.40.0.
 2021-11-07 22:34:38 +00:00
Ricardo Wurmus
87db919dbb
gnu: r-deseq2: Update to 1.34.0. 
* gnu/packages/bioconductor.scm (r-deseq2): Update to 1.34.0.
 2021-11-07 22:34:38 +00:00
Ricardo Wurmus
f34bcc5c6b
gnu: r-copywriter: Update to 2.26.0. 
* gnu/packages/bioconductor.scm (r-copywriter): Update to 2.26.0.
 2021-11-07 22:34:37 +00:00
Ricardo Wurmus
e5d90645ea
gnu: r-complexheatmap: Update to 2.10.0. 
* gnu/packages/bioconductor.scm (r-complexheatmap): Update to 2.10.0.
[propagated-inputs]: Remove r-cairo.
 2021-11-07 22:34:37 +00:00
Ricardo Wurmus
126a4b6c9d
gnu: r-chipseq: Update to 1.44.0. 
* gnu/packages/bioconductor.scm (r-chipseq): Update to 1.44.0.
 2021-11-07 22:34:37 +00:00
Ricardo Wurmus
cd7c1e2c3e
gnu: r-chipseeker: Update to 1.30.0. 
* gnu/packages/bioconductor.scm (r-chipseeker): Update to 1.30.0.
 2021-11-07 22:34:37 +00:00
Ricardo Wurmus
395e9ab420
gnu: r-category: Update to 2.60.0. 
* gnu/packages/bioconductor.scm (r-category): Update to 2.60.0.
 2021-11-07 22:34:37 +00:00
Ricardo Wurmus
a6b83bd30d
gnu: r-bsgenome: Update to 1.62.0. 
* gnu/packages/bioconductor.scm (r-bsgenome): Update to 1.62.0.
 2021-11-07 22:34:37 +00:00
Ricardo Wurmus
eea602cdbb
gnu: r-biovizbase: Update to 1.42.0. 
* gnu/packages/bioconductor.scm (r-biovizbase): Update to 1.42.0.
 2021-11-07 22:34:37 +00:00
Ricardo Wurmus
7851f7f2c6
gnu: r-biostrings: Update to 2.62.0. 
* gnu/packages/bioconductor.scm (r-biostrings): Update to 2.62.0.
 2021-11-07 22:34:37 +00:00
Ricardo Wurmus
d0ceaf62fc
gnu: r-biomart: Update to 2.50.0. 
* gnu/packages/bioconductor.scm (r-biomart): Update to 2.50.0.
 2021-11-07 22:34:37 +00:00
Ricardo Wurmus
918c08e20d
gnu: r-biobase: Update to 2.54.0. 
* gnu/packages/bioconductor.scm (r-biobase): Update to 2.54.0.
 2021-11-07 22:34:37 +00:00
Ricardo Wurmus
e606add2e4
gnu: r-bamsignals: Update to 1.26.0. 
* gnu/packages/bioconductor.scm (r-bamsignals): Update to 1.26.0.
 2021-11-07 22:34:37 +00:00
Ricardo Wurmus
9efb70c077
gnu: r-aroma-light: Update to 3.24.0. 
* gnu/packages/bioconductor.scm (r-aroma-light): Update to 3.24.0.
 2021-11-07 22:34:37 +00:00
Ricardo Wurmus
7f291d0965
gnu: r-annotationhub: Update to 3.2.0. 
* gnu/packages/bioconductor.scm (r-annotationhub): Update to 3.2.0.
 2021-11-07 22:34:37 +00:00
Ricardo Wurmus
c46f294350
gnu: r-annotationforge: Update to 1.36.0. 
* gnu/packages/bioconductor.scm (r-annotationforge): Update to 1.36.0.
 2021-11-07 22:34:37 +00:00
Ricardo Wurmus
0e31c0034a
gnu: r-annotationfilter: Update to 1.18.0. 
* gnu/packages/bioconductor.scm (r-annotationfilter): Update to 1.18.0.
 2021-11-07 22:34:36 +00:00
Ricardo Wurmus
eccd328684
gnu: r-annotationdbi: Update to 1.56.1. 
* gnu/packages/bioconductor.scm (r-annotationdbi): Update to 1.56.1.
 2021-11-07 22:34:36 +00:00
Ricardo Wurmus
eee1bc786a
gnu: r-annotate: Update to 1.72.0. 
* gnu/packages/bioconductor.scm (r-annotate): Update to 1.72.0.
 2021-11-07 22:34:36 +00:00
Ricardo Wurmus
5b63db8f83
gnu: r-affxparser: Update to 1.66.0. 
* gnu/packages/bioconductor.scm (r-affxparser): Update to 1.66.0.
 2021-11-07 22:34:36 +00:00
Ricardo Wurmus
5de927226c
gnu: r-affyio: Update to 1.64.0. 
* gnu/packages/bioconductor.scm (r-affyio): Update to 1.64.0.
 2021-11-07 22:34:36 +00:00
Ricardo Wurmus
5ab6e9e100
gnu: r-affycoretools: Update to 1.66.0. 
* gnu/packages/bioconductor.scm (r-affycoretools): Update to 1.66.0.
 2021-11-07 22:34:36 +00:00
Ricardo Wurmus
21b5db3f1e
gnu: r-affycontam: Update to 1.52.0. 
* gnu/packages/bioconductor.scm (r-affycontam): Update to 1.52.0.
 2021-11-07 22:34:36 +00:00
Ricardo Wurmus
71f58a16ae
gnu: r-affycompatible: Update to 1.54.0. 
* gnu/packages/bioconductor.scm (r-affycompatible): Update to 1.54.0.
 2021-11-07 22:34:36 +00:00
Ricardo Wurmus
a610856e88
gnu: r-affycomp: Update to 1.70.0. 
* gnu/packages/bioconductor.scm (r-affycomp): Update to 1.70.0.
 2021-11-07 22:34:36 +00:00
Ricardo Wurmus
1a4e10d555
gnu: r-affy: Update to 1.72.0. 
* gnu/packages/bioconductor.scm (r-affy): Update to 1.72.0.
 2021-11-07 22:34:36 +00:00
Ricardo Wurmus
a85e744c3d
gnu: r-iranges: Update to 2.28.0. 
* gnu/packages/bioconductor.scm (r-iranges): Update to 2.28.0.
 2021-11-07 22:34:36 +00:00
Ricardo Wurmus
1acf3f1821
gnu: r-ideoviz: Update to 1.30.0. 
* gnu/packages/bioconductor.scm (r-ideoviz): Update to 1.30.0.
 2021-11-07 22:34:36 +00:00
Ricardo Wurmus
b0a2fc9253
gnu: r-bluster: Update to 1.4.0. 
* gnu/packages/bioconductor.scm (r-bluster): Update to 1.4.0.
 2021-11-07 22:34:36 +00:00
Ricardo Wurmus
35ccf99fff
gnu: r-delayedarray: Update to 0.20.0. 
* gnu/packages/bioconductor.scm (r-delayedarray): Update to 0.20.0.
 2021-11-07 22:34:35 +00:00
Ricardo Wurmus
7cc053eaca
gnu: r-deepsnv: Update to 1.40.0. 
* gnu/packages/bioconductor.scm (r-deepsnv): Update to 1.40.0.
 2021-11-07 22:34:35 +00:00
Ricardo Wurmus
628a8f8c78
gnu: r-decipher: Update to 2.22.0. 
* gnu/packages/bioconductor.scm (r-decipher): Update to 2.22.0.
 2021-11-07 22:34:35 +00:00
Ricardo Wurmus
07b14e81f9
gnu: r-cummerbund: Update to 2.36.0. 
* gnu/packages/bioconductor.scm (r-cummerbund): Update to 2.36.0.
 2021-11-07 22:34:35 +00:00
Ricardo Wurmus
9d51c1f423
gnu: r-coverageview: Update to 1.32.0. 
* gnu/packages/bioconductor.scm (r-coverageview): Update to 1.32.0.
 2021-11-07 22:34:35 +00:00
Ricardo Wurmus
3622390699
gnu: r-biocgenerics: Update to 0.40.0. 
* gnu/packages/bioconductor.scm (r-biocgenerics): Update to 0.40.0.
 2021-11-07 22:34:35 +00:00
Ricardo Wurmus
6ed26516bf
gnu: r-biocversion: Update to 3.14.0. 
* gnu/packages/bioconductor.scm (r-biocversion): Update to 3.14.0.
 2021-11-07 22:34:35 +00:00
Ricardo Wurmus
fc0fa7a431
gnu: r-aneufinder: Update to 1.22.0. 
* gnu/packages/bioconductor.scm (r-aneufinder): Update to 1.22.0.
 2021-11-07 22:34:35 +00:00
Ricardo Wurmus
d1c79f5a2c
gnu: r-biocparallel: Update to 1.28.0. 
* gnu/packages/bioconductor.scm (r-biocparallel): Update to 1.28.0.
[arguments]: Adjust build phase to patch renamed file.
 2021-11-07 22:34:35 +00:00
Ricardo Wurmus
4a92ab58f6
gnu: Add r-msfeatures. 
* gnu/packages/bioconductor.scm (r-msfeatures): New variable.
 2021-11-07 22:34:34 +00:00
Ricardo Wurmus
92b85194cd
gnu: r-with-tests: Update patch to DESCRIPTION file. 
* gnu/packages/statistics.scm (r-with-tests)[arguments]: Patch line breaks and
spaces in DESCRIPTION file to ensure reproducible build.
 2021-11-07 22:34:34 +00:00
Ricardo Wurmus
108111114d
gnu: r-with-tests: Remove trailing #T. 
* gnu/packages/statistics.scm (r-with-tests)[arguments]: Remove trailing #T
from build phases.
 2021-11-07 22:34:34 +00:00
Ricardo Wurmus
17d0bbef88
gnu: r-with-tests: Update to 4.1.2. 
* gnu/packages/statistics.scm (r-with-tests): Update to 4.1.2.
 2021-11-07 22:34:29 +00:00
Thorsten Wilms
bd41e590dd
gnu: ardour: Update to 6.9. 
* gnu/packages/audio.scm (ardour): Update to 6.9.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
 2021-11-07 23:10:41 +01:00
Brendan Tildesley
dab2ac2ed5
gnu: 0ad: Update to 0.0.25b-alpha. 
* gnu/packages/games.scm (0ad-data): Update to 0.0.25b-alpha.
Unpack .zip files without need for a snippet.
(0ad): Update to 0.0.25b-alpha.
[arguments]<#:phases>: Properly unbundle cxxtest. Respect #:tests?.
Install Freedesktop mimeinfo.
Install icon to hicolor theme instead of share/pixmaps, which I don't
think is used.
<#:tests> Disable tests for now since they don't run.

Signed-off-by: Nicolas Goaziou <mail@nicolasgoaziou.fr>
 2021-11-07 22:57:05 +01:00
Tobias Geerinckx-Rice
90cd653abe
gnu: ansible-core: Update to 2.11.6. 
* gnu/packages/admin.scm (ansible-core): Update to 2.11.6.
 2021-11-07 22:52:43 +01:00
Tobias Geerinckx-Rice
031906be76
gnu: xfstests: Update to 1.1.0-1.bae1d15. 
* gnu/packages/file-systems.scm (xfstests): Update to 1.1.0-1.bae1d15.
 2021-11-07 22:52:43 +01:00
Tobias Geerinckx-Rice
6a36f4e4fc
gnu: lv2: Update to 1.18.2. 
* gnu/packages/audio.scm (lv2): Update to 1.18.2.
 2021-11-07 22:52:43 +01:00
Tobias Geerinckx-Rice
c569c735c2
gnu: jalv: Update to 1.6.6. 
* gnu/packages/audio.scm (jalv): Update to 1.6.6.
 2021-11-07 22:52:43 +01:00
Tobias Geerinckx-Rice
b331ee62f5
gnu: lilv: Update to 0.24.12. 
* gnu/packages/audio.scm (lilv): Update to 0.24.12.
[arguments]: Don't explicitly return #t from phases.
 2021-11-07 22:52:42 +01:00
Tobias Geerinckx-Rice
55bef80580
gnu: dvdisaster: Remove uninstallation script. 
* gnu/packages/cdrom.scm (dvdisaster)[arguments]: Add a new
'remove-uninstall-script phase.
 2021-11-07 22:52:42 +01:00
Tobias Geerinckx-Rice
153d9bca72
gnu: dvdisaster: Update to 0.79.9. 
* gnu/packages/cdrom.scm (dvdisaster): Update to 0.79.9.
[source, home-page]: Update home page.
[arguments]: Don't explicitly return #t from phases.
 2021-11-07 22:52:42 +01:00
Felix Gruber
92af2ec5d0
gnu: openttd: Fix build failure. 
* packages/games.scm (openttd)[native-inputs]: Use gcc-9 to fix build
  failure.

Signed-off-by: Liliana Marie Prikler <liliana.prikler@gmail.com>
 2021-11-07 22:13:37 +01:00
Felix Gruber
c9b9919858
gnu: openttd-openmsx: Update to 0.4.2. 
* packages/games.scm (openttd-openmsx): Update to 0.4.2.
  [native-inputs]: Replace python-2 with python-wrapper.

Signed-off-by: Liliana Marie Prikler <liliana.prikler@gmail.com>
 2021-11-07 22:13:37 +01:00
Felix Gruber
574f4b7d3f
gnu: openttd-opensfx: Update to 1.0.2. 
* packages/games.scm (openttd-opensfx): Update to 1.0.2.
  [native-inputs]: Replace python-2 with python.

Signed-off-by: Liliana Marie Prikler <liliana.prikler@gmail.com>
 2021-11-07 22:13:37 +01:00
Felix Gruber
c2759211fc
gnu: openttd-opengfx: Update to 7.1. 
* packages/games.scm (openttd-opengfx): Update to 7.1.
  [native-inputs]: Replace python-2 with python.
  [arguments]: Use cc-for-target.

Signed-off-by: Liliana Marie Prikler <liliana.prikler@gmail.com>
 2021-11-07 22:13:36 +01:00
Felix Gruber
b6bb7720eb
gnu: openttd-engine: Update to 12.0. 
* gnu/packages/games.scm (openttd-engine): Update engine to 12.0.

Signed-off-by: Liliana Marie Prikler <liliana.prikler@gmail.com>
 2021-11-07 22:13:36 +01:00
Arun Isaac
2ebadb390e
gnu: Add weechat-wee-slack. 
* gnu/packages/messaging.scm (weechat-wee-slack): New variable.

Signed-off-by: Efraim Flashner <efraim@flashner.co.il>
 2021-11-07 22:58:03 +02:00
Arun Isaac
7ebed0cdc8
gnu: Add weechat-matrix. 
* gnu/packages/messaging.scm (weechat-matrix): New variable.

Signed-off-by: Efraim Flashner <efraim@flashner.co.il>
 2021-11-07 22:50:32 +02:00
Arun Isaac
73679a6837
gnu: Add python-webcolors. 
* gnu/packages/python-web.scm (python-webcolors): New variable.

Signed-off-by: Efraim Flashner <efraim@flashner.co.il>
 2021-11-07 22:50:27 +02:00
Vinicius Monego
6e3eba9d1f
gnu: Add rust-log4rs-1. 
* gnu/packages/crates-io.scm (rust-log4rs-1): New variable.

Signed-off-by: Efraim Flashner <efraim@flashner.co.il>
 2021-11-07 22:28:48 +02:00
Vinicius Monego
b76b29957e
gnu: Add rust-log-mdc-0.1. 
* gnu/packages/crates-io.scm (rust-log-mdc-0.1): New variable.

Signed-off-by: Efraim Flashner <efraim@flashner.co.il>
 2021-11-07 22:28:46 +02:00
Vinicius Monego
e9eb6b1102
gnu: Add rust-diffus-0.10. 
* gnu/packages/crates-io.scm (rust-diffus-0.10): New variable.

Signed-off-by: Efraim Flashner <efraim@flashner.co.il>
 2021-11-07 22:28:44 +02:00
Vinicius Monego
38912f139f
gnu: Add rust-diffus-derive-0.10. 
* gnu/packages/crates-io.scm (rust-diffus-derive-0.10): New variable.

Signed-off-by: Efraim Flashner <efraim@flashner.co.il>
 2021-11-07 22:28:43 +02:00
Vinicius Monego
551e39ccb1
gnu: Add rust-snake-case-0.3. 
* gnu/packages/crates-io.scm (rust-snake-case-0.3): New variable.

Signed-off-by: Efraim Flashner <efraim@flashner.co.il>
 2021-11-07 22:28:41 +02:00
Vinicius Monego
cd968c83aa
gnu: Add rust-xmltree-0.10. 
* gnu/packages/crates-io.scm (rust-xmltree-0.10): New variable.
(rust-xmltree-0.8): Inherit from above.

Signed-off-by: Efraim Flashner <efraim@flashner.co.il>
 2021-11-07 22:28:39 +02:00
Vinicius Monego
9bf3bc8418
gnu: Add rust-color-backtrace-0.5. 
* gnu/packages/crates-io.scm (rust-color-backtrace-0.5): New variable.

Signed-off-by: Efraim Flashner <efraim@flashner.co.il>
 2021-11-07 22:28:37 +02:00
Efraim Flashner
3e6f857354
gnu: x42-plugins: Prepare for cross-compiling. 
* gnu/packages/music.scm (x42-plugins)[arguments]: Remove
'set-CC-variable phase. Use cc-for-target in make-flags.
 2021-11-07 22:25:23 +02:00
Thorsten Wilms
6f45418416
gnu: x42-plugins: Update to 20211016. 
* gnu/packages/music.scm (x42-plugins): Update to 20211016.

Signed-off-by: Efraim Flashner <efraim@flashner.co.il>
 2021-11-07 22:21:20 +02:00
Marius Bakke
a0f1476e8f
gnu: emacs-stream: Don't set a source file name. 
This is a follow-up to 678248f5ea.

* gnu/packages/emacs-xyz.scm (emacs-stream)[source]: Remove FILE-NAME, as the
tarball name is already OK; and the -checkout name breaks build system
assumptions on the core-updates branch.
 2021-11-07 14:20:41 +01:00
Felix Gruber
dc8e9d6f88
gnu: osm2pgsql: Update to 1.5.1. 
* gnu/packages/geo.scm (osm2pgsql): Update to 1.5.1.

Signed-off-by: Guillaume Le Vaillant <glv@posteo.net>
 2021-11-07 10:01:31 +01:00
Felix Gruber
53bbbfb77c
gnu: protozero: Update to 1.7.0. 
* gnu/packages/protobuf.scm (protozero): Update to 1.7.0.

Signed-off-by: Guillaume Le Vaillant <glv@posteo.net>
 2021-11-07 09:59:59 +01:00
Felix Gruber
b217208dd0
gnu: libosmium: Update to 2.17.1. 
* gnu/packages/geo.scm (libosmium): Update to 2.17.1.

Signed-off-by: Guillaume Le Vaillant <glv@posteo.net>
 2021-11-07 09:56:55 +01:00
Mark H Weaver
b11badfb4c
gnu: webkitgtk: Improve the 32-bit x86 target check. 
* gnu/packages/webkit.scm (webkitgtk)[arguments]: In the
'prepare-build-environment' phase, use 'target-x86-32?'.
 2021-11-07 01:38:59 -04:00
Nicolas Goaziou
b96ae47bb0
gnu: emacs-geiser-guile: Update to 0.18. 
* gnu/packages/emacs-xyz.scm (emacs-geiser-guile): Update to 0.18.
[arguments]<#:phases>: Remove trailing #t from phase.
 2021-11-07 00:20:35 +01:00
Nicolas Goaziou
b2ee0798ee
gnu: emacs-helm-bibtex: Update to 2.0.0-3.aa77534. 
* gnu/packages/emacs-xyz.scm (emacs-helm-bibtex): Update to 2.0.0-3.aa77534.
 2021-11-06 22:42:55 +01:00
Nicolas Goaziou
9c30669551
gnu: Add emacs-citar. 
* gnu/packages/emacs-xyz.scm (emacs-citar): New variable.
 2021-11-06 22:15:36 +01:00
Marius Bakke
290a7664b5
gnu: fio: Disable native CPU compiler optimizations. 
* gnu/packages/benchmark.scm (fio)[arguments]: Add #:configure-flags.  Adjust
configure phase accordingly.
 2021-11-06 17:46:37 +01:00
Marius Bakke
75f2eb41cc
gnu: fio: Disable Ceph/RADOS support. 
This little-used feature is easy to add on demand and blows up the closure.

* gnu/packages/benchmark.scm (fio)[inputs]: Remove CEPH.
 2021-11-06 17:46:37 +01:00
Marius Bakke
5e7c2eb7ae
gnu: fio: Don't bother wrapping scripts. 
fio comes with many scripts of varying utility.  Some require extra additional
programs, which users can easily install as needed; there is little use in
imposing all optional dependencies on all users of fio.

* gnu/packages/benchmark.scm (fio)[arguments]: Remove patch-paths phase.
Rewrite move-outputs to move all discovered scripts and not wrap any.
[inputs]: Remove GNUPLOT, PYTHON-2, PYTHON2-NUMPY, and PYTHON2-PANDAS.  Add
PYTHON.
 2021-11-06 17:46:37 +01:00
Liliana Marie Prikler
567c4f4495
Update mailmap and copyright assignments for Liliana Marie Prikler. 
Use full names everywhere.

* .mailmap: Use full name for Liliana Marie Prikler.
* gnu/packages/zig.scm: Likewise.
 2021-11-06 16:03:43 +01:00
Xinglu Chen
e58994f113
gnu: msmtp: Update to 1.8.19. 
* gnu/packages/mail.scm (msmtp): Update to 1.8.19.
[properties]: Set ‘release-monitoring-url’.
 2021-11-06 10:47:14 +01:00
Aleksandr Vityazev
39bf4eb38f
gnu: Add emacs-devdocs. 
* gnu/packages/emacs-xyz.scm (emacs-devdocs): New variable.

Signed-off-by: Nicolas Goaziou <mail@nicolasgoaziou.fr>
 2021-11-06 10:46:14 +01:00
phodina
c161ec6dc5
gnu: Add emacs-excorporate. 
* gnu/packages/emacs-xyz.scm (emacs-excorporate): New variable.

Signed-off-by: Nicolas Goaziou <mail@nicolasgoaziou.fr>
 2021-11-06 10:43:29 +01:00
phodina
d101486d7f
gnu: Add emacs-fsm. 
* gnu/packages/emacs-xyz.scm (emacs-fsm): New variable.

Signed-off-by: Nicolas Goaziou <mail@nicolasgoaziou.fr>
 2021-11-06 10:43:29 +01:00
phodina
2a66d806a8
gnu: Add emacs-soap-client. 
* gnu/packages/emacs-xyz.scm (emacs-soap-client): New variable.

Signed-off-by: Nicolas Goaziou <mail@nicolasgoaziou.fr>
 2021-11-06 10:43:29 +01:00
phodina
68abfea5c2
gnu: Add emacs-url-http-ntlm. 
* gnu/packages/emacs-xyz.scm (emacs-url-http-ntlm): New variable.

Signed-off-by: Nicolas Goaziou <mail@nicolasgoaziou.fr>
 2021-11-06 10:43:29 +01:00