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62808 Commits

Author SHA1 Message Date
Ricardo Wurmus
7cda2d415f
gnu: r-biosigner: Update to 1.18.2. 
* gnu/packages/bioconductor.scm (r-biosigner): Update to 1.18.2.
 2020-12-09 23:30:12 +01:00
Ricardo Wurmus
4714787793
gnu: r-biocneighbors: Update to 1.8.2. 
* gnu/packages/bioconductor.scm (r-biocneighbors): Update to 1.8.2.
[propagated-inputs]: Remove r-rcppannoy.
 2020-12-09 23:30:12 +01:00
Ricardo Wurmus
52e14cb798
gnu: r-lubridate: Update to 1.7.9.2. 
* gnu/packages/statistics.scm (r-lubridate): Update to 1.7.9.2.
 2020-12-09 22:03:39 +01:00
Ricardo Wurmus
d0c7b9f718
gnu: r-lme4: Update to 1.1-26. 
* gnu/packages/statistics.scm (r-lme4): Update to 1.1-26.
 2020-12-09 22:03:39 +01:00
Ricardo Wurmus
d6d2984869
gnu: r-fpc: Update to 2.2-9. 
* gnu/packages/statistics.scm (r-fpc): Update to 2.2-9.
 2020-12-09 22:03:39 +01:00
Ricardo Wurmus
61d24175b6
gnu: r-mclust: Update to 5.4.7. 
* gnu/packages/statistics.scm (r-mclust): Update to 5.4.7.
 2020-12-09 22:03:39 +01:00
Ricardo Wurmus
31a6a60576
gnu: r-gplots: Update to 3.1.1. 
* gnu/packages/statistics.scm (r-gplots): Update to 3.1.1.
 2020-12-09 22:03:39 +01:00
Ricardo Wurmus
3ffc5515db
gnu: r-hmisc: Update to 4.4-2. 
* gnu/packages/statistics.scm (r-hmisc): Update to 4.4-2.
 2020-12-09 22:03:39 +01:00
Ricardo Wurmus
5d0ccf888f
gnu: r-rprojroot: Update to 2.0.2. 
* gnu/packages/statistics.scm (r-rprojroot): Update to 2.0.2.
[propagated-inputs]: Remove r-backports.
[native-inputs]: Add r-knitr.
 2020-12-09 22:03:38 +01:00
Ricardo Wurmus
da290237fb
gnu: r-rcpparmadillo: Update to 0.10.1.2.0. 
* gnu/packages/statistics.scm (r-rcpparmadillo): Update to 0.10.1.2.0.
 2020-12-09 22:03:38 +01:00
Ricardo Wurmus
48af6aa1cb
gnu: r-rstudioapi: Update to 0.13. 
* gnu/packages/statistics.scm (r-rstudioapi): Update to 0.13.
[native-inputs]: Add r-knitr.
 2020-12-09 22:03:38 +01:00
Ricardo Wurmus
e4ce58424e
gnu: r-backports: Update to 1.2.0. 
* gnu/packages/statistics.scm (r-backports): Update to 1.2.0.
 2020-12-09 22:03:38 +01:00
Ricardo Wurmus
aed99e0c7d
gnu: r-data-table: Update to 1.13.4. 
* gnu/packages/statistics.scm (r-data-table): Update to 1.13.4.
 2020-12-09 22:03:38 +01:00
Ricardo Wurmus
348c21eafc
gnu: r-dbplyr: Update to 2.0.0. 
* gnu/packages/statistics.scm (r-dbplyr): Update to 2.0.0.
[propagated-inputs]: Add r-withr.
 2020-12-09 22:03:38 +01:00
Ricardo Wurmus
0bc87a5282
gnu: r-rlang: Update to 0.4.9. 
* gnu/packages/statistics.scm (r-rlang): Update to 0.4.9.
 2020-12-09 22:03:38 +01:00
Ricardo Wurmus
ff34dbb542
gnu: r-testthat: Update to 3.0.0. 
* gnu/packages/statistics.scm (r-testthat): Update to 3.0.0.
[propagated-inputs]: Add r-brio, r-callr, r-desc, r-jsonlite, r-lifecycle,
r-processx, r-ps, and r-waldo.
[native-inputs]: Add r-knitr.
 2020-12-09 22:03:38 +01:00
Ricardo Wurmus
59771643de
gnu: r-codetools: Update to 0.2-18. 
* gnu/packages/statistics.scm (r-codetools): Update to 0.2-18.
 2020-12-09 22:03:38 +01:00
Ricardo Wurmus
1f2ceaccf1
gnu: r-diversitree: Update to 0.9-15. 
* gnu/packages/cran.scm (r-diversitree): Update to 0.9-15.
 2020-12-09 22:03:38 +01:00
Ricardo Wurmus
48504a231a
gnu: r-tidymodels: Update to 0.1.2. 
* gnu/packages/cran.scm (r-tidymodels): Update to 0.1.2.
[propagated-inputs]: Remove r-crayon.
 2020-12-09 22:03:38 +01:00
Ricardo Wurmus
29ebaf068e
gnu: r-tune: Update to 0.1.2. 
* gnu/packages/cran.scm (r-tune): Update to 0.1.2.
[propagated-inputs]: Remove r-crayon and r-lifecycle; add r-generics.
 2020-12-09 22:03:38 +01:00
Ricardo Wurmus
94ebe64f19
gnu: r-cpp11: Update to 0.2.4. 
* gnu/packages/cran.scm (r-cpp11): Update to 0.2.4.
 2020-12-09 22:03:37 +01:00
Ricardo Wurmus
80a279b118
gnu: r-spatstat-data: Update to 1.5-2. 
* gnu/packages/cran.scm (r-spatstat-data): Update to 1.5-2.
 2020-12-09 22:03:37 +01:00
Ricardo Wurmus
aa486bbc2f
gnu: r-hardhat: Update to 0.1.5. 
* gnu/packages/cran.scm (r-hardhat): Update to 0.1.5.
 2020-12-09 22:03:37 +01:00
Ricardo Wurmus
f694850d38
gnu: r-brms: Update to 2.14.4. 
* gnu/packages/cran.scm (r-brms): Update to 2.14.4.
[propagated-inputs]: Add r-projpred.
 2020-12-09 22:03:37 +01:00
Ricardo Wurmus
2847297e88
gnu: r-isoband: Update to 0.2.3. 
* gnu/packages/cran.scm (r-isoband): Update to 0.2.3.
 2020-12-09 22:03:37 +01:00
Ricardo Wurmus
b19230386d
gnu: r-loo: Update to 2.4.0. 
* gnu/packages/cran.scm (r-loo): Update to 2.4.0.
 2020-12-09 22:03:37 +01:00
Ricardo Wurmus
fccc5ac29a
gnu: r-stopwords: Update to 2.1. 
* gnu/packages/cran.scm (r-stopwords): Update to 2.1.
 2020-12-09 22:03:37 +01:00
Ricardo Wurmus
cdbe38c682
gnu: r-isocodes: Update to 2020.12.04. 
* gnu/packages/cran.scm (r-isocodes): Update to 2020.12.04.
 2020-12-09 22:03:37 +01:00
Ricardo Wurmus
5a4b3d642c
gnu: r-fda: Update to 5.1.7. 
* gnu/packages/cran.scm (r-fda): Update to 5.1.7.
[propagated-inputs]: Add r-fds.
 2020-12-09 22:03:36 +01:00
Ricardo Wurmus
b937197a14
gnu: r-r-filesets: Update to 2.14.0. 
* gnu/packages/cran.scm (r-r-filesets): Update to 2.14.0.
 2020-12-09 22:03:36 +01:00
Ricardo Wurmus
3e44c41bcb
gnu: r-abtest: Update to 0.2.2. 
* gnu/packages/cran.scm (r-abtest): Update to 0.2.2.
 2020-12-09 22:03:36 +01:00
Ricardo Wurmus
6ad24c2b09
gnu: r-showtext: Update to 0.9-1. 
* gnu/packages/cran.scm (r-showtext): Update to 0.9-1.
 2020-12-09 22:03:36 +01:00
Ricardo Wurmus
98d69d6f58
gnu: r-sysfonts: Update to 0.8.2. 
* gnu/packages/cran.scm (r-sysfonts): Update to 0.8.2.
 2020-12-09 22:03:36 +01:00
Ricardo Wurmus
af3385c9c3
gnu: r-parameters: Update to 0.10.1. 
* gnu/packages/cran.scm (r-parameters): Update to 0.10.1.
 2020-12-09 22:03:36 +01:00
Ricardo Wurmus
2213fe7b3e
gnu: r-patchwork: Update to 1.1.0. 
* gnu/packages/cran.scm (r-patchwork): Update to 1.1.0.
 2020-12-09 22:03:36 +01:00
Ricardo Wurmus
010deb276f
gnu: r-leiden: Update to 0.3.6. 
* gnu/packages/cran.scm (r-leiden): Update to 0.3.6.
 2020-12-09 22:03:36 +01:00
Ricardo Wurmus
b71e934478
gnu: r-uwot: Update to 0.1.9. 
* gnu/packages/cran.scm (r-uwot): Update to 0.1.9.
 2020-12-09 22:03:35 +01:00
Ricardo Wurmus
e458d7b533
gnu: r-umap: Update to 0.2.7.0. 
* gnu/packages/cran.scm (r-umap): Update to 0.2.7.0.
 2020-12-09 22:03:35 +01:00
Ricardo Wurmus
8d459d27e0
gnu: r-refmanager: Update to 1.3.0. 
* gnu/packages/cran.scm (r-refmanager): Update to 1.3.0.
[propagated-inputs]: Remove r-bibtex.
[native-inputs]: Add r-knitr.
 2020-12-09 22:03:35 +01:00
Ricardo Wurmus
9b398a0332
gnu: r-dae: Update to 3.1-32. 
* gnu/packages/cran.scm (r-dae): Update to 3.1-32.
 2020-12-09 22:03:35 +01:00
Ricardo Wurmus
c1ba4adf8f
gnu: r-clue: Update to 0.3-58. 
* gnu/packages/cran.scm (r-clue): Update to 0.3-58.
 2020-12-09 22:03:35 +01:00
Ricardo Wurmus
a80b912c87
gnu: r-ggvis: Update to 0.4.7. 
* gnu/packages/cran.scm (r-ggvis): Update to 0.4.7.
[propagated-inputs]: Remove r-lazyeval; add r-rlang.
 2020-12-09 22:03:35 +01:00
Ricardo Wurmus
91e1961659
gnu: r-ggraph: Update to 2.0.4. 
* gnu/packages/cran.scm (r-ggraph): Update to 2.0.4.
[propagated-inputs]: Add r-withr.
 2020-12-09 22:03:34 +01:00
Ricardo Wurmus
77eb8216cc
gnu: r-rms: Update to 6.1-0. 
* gnu/packages/cran.scm (r-rms): Update to 6.1-0.
 2020-12-09 22:03:34 +01:00
Ricardo Wurmus
e3d0662873
gnu: r-deldir: Update to 0.2-3. 
* gnu/packages/cran.scm (r-deldir): Update to 0.2-3.
 2020-12-09 22:03:34 +01:00
Ricardo Wurmus
d5204d6bb4
gnu: r-tensora: Update to 0.36.2. 
* gnu/packages/cran.scm (r-tensora): Update to 0.36.2.
 2020-12-09 22:03:34 +01:00
Ricardo Wurmus
bb9e686088
gnu: r-future: Update to 1.20.1. 
* gnu/packages/cran.scm (r-future): Update to 1.20.1.
[propagated-inputs]: Add r-parallelly.
 2020-12-09 22:03:34 +01:00
Ricardo Wurmus
d1d42fa5c0
gnu: r-globals: Update to 0.14.0. 
* gnu/packages/cran.scm (r-globals): Update to 0.14.0.
 2020-12-09 22:03:34 +01:00
Ricardo Wurmus
c91d1a75e9
gnu: r-epi: Update to 2.42. 
* gnu/packages/cran.scm (r-epi): Update to 2.42.
[propagated-inputs]: Add r-dplyr.
 2020-12-09 22:03:34 +01:00
Ricardo Wurmus
319a408e08
gnu: r-rmpfr: Update to 0.8-2. 
* gnu/packages/cran.scm (r-rmpfr): Update to 0.8-2.
 2020-12-09 22:03:34 +01:00
Ricardo Wurmus
68b720ec4a
gnu: r-rnifti: Update to 1.3.0. 
* gnu/packages/cran.scm (r-rnifti): Update to 1.3.0.
 2020-12-09 22:03:34 +01:00
Ricardo Wurmus
c148d5afbc
gnu: r-flare: Update to 1.7.0. 
* gnu/packages/cran.scm (r-flare): Update to 1.7.0.
 2020-12-09 22:03:33 +01:00
Ricardo Wurmus
7e205beddf
gnu: r-tm: Update to 0.7-8. 
* gnu/packages/cran.scm (r-tm): Update to 0.7-8.
 2020-12-09 22:03:33 +01:00
Ricardo Wurmus
7fc054b050
gnu: r-tiff: Update to 0.1-6. 
* gnu/packages/cran.scm (r-tiff): Update to 0.1-6.
 2020-12-09 22:03:33 +01:00
Ricardo Wurmus
a2a6466db8
gnu: r-rcppannoy: Update to 0.0.17. 
* gnu/packages/cran.scm (r-rcppannoy): Update to 0.0.17.
 2020-12-09 22:03:33 +01:00
Ricardo Wurmus
5f68a11ea2
gnu: r-gh: Update to 1.2.0. 
* gnu/packages/cran.scm (r-gh): Update to 1.2.0.
[propagated-inputs]: Add r-gitcreds.
[native-inputs]: Add r-knitr.
 2020-12-09 22:03:33 +01:00
Ricardo Wurmus
2ccaac5519
gnu: r-effectsize: Update to 0.4.1. 
* gnu/packages/cran.scm (r-effectsize): Update to 0.4.1.
 2020-12-09 22:03:33 +01:00
Ricardo Wurmus
620c01b76d
gnu: r-ggeffects: Update to 1.0.0. 
* gnu/packages/cran.scm (r-ggeffects): Update to 1.0.0.
 2020-12-09 22:03:33 +01:00
Ricardo Wurmus
5af35b3acf
gnu: r-performance: Update to 0.6.0. 
* gnu/packages/cran.scm (r-performance): Update to 0.6.0.
 2020-12-09 22:03:33 +01:00
Ricardo Wurmus
2c9a5c0620
gnu: r-bayestestr: Update to 0.8.0. 
* gnu/packages/cran.scm (r-bayestestr): Update to 0.8.0.
 2020-12-09 22:03:33 +01:00
Ricardo Wurmus
2424da94f6
gnu: r-multcomp: Update to 1.4-15. 
* gnu/packages/cran.scm (r-multcomp): Update to 1.4-15.
 2020-12-09 22:03:32 +01:00
Ricardo Wurmus
e0ba249568
gnu: r-magick: Update to 2.5.2. 
* gnu/packages/cran.scm (r-magick): Update to 2.5.2.
 2020-12-09 22:03:32 +01:00
Ricardo Wurmus
f76cc34b4f
gnu: r-raster: Update to 3.4-5. 
* gnu/packages/cran.scm (r-raster): Update to 3.4-5.
 2020-12-09 22:03:32 +01:00
Ricardo Wurmus
925b72fd6d
gnu: r-slam: Update to 0.1-48. 
* gnu/packages/cran.scm (r-slam): Update to 0.1-48.
 2020-12-09 22:03:32 +01:00
Ricardo Wurmus
e99a124b72
gnu: r-blockfest: Update to 1.8. 
* gnu/packages/cran.scm (r-blockfest): Update to 1.8.
 2020-12-09 22:03:32 +01:00
Ricardo Wurmus
f836bc870e
gnu: r-doby: Update to 4.6.8. 
* gnu/packages/cran.scm (r-doby): Update to 4.6.8.
 2020-12-09 22:03:32 +01:00
Ricardo Wurmus
7b5443d2d9
gnu: r-flextable: Update to 0.6.1. 
* gnu/packages/cran.scm (r-flextable): Update to 0.6.1.
[native-inputs]: Add r-knitr.
 2020-12-09 22:03:32 +01:00
Ricardo Wurmus
2ed2e1d58c
gnu: r-insight: Update to 0.11.1. 
* gnu/packages/cran.scm (r-insight): Update to 0.11.1.
 2020-12-09 22:03:32 +01:00
Ricardo Wurmus
624d3887a5
gnu: r-officer: Update to 0.3.15. 
* gnu/packages/cran.scm (r-officer): Update to 0.3.15.
 2020-12-09 22:03:31 +01:00
Ricardo Wurmus
e0c6ecf2fc
gnu: r-rdpack: Update to 2.1. 
* gnu/packages/cran.scm (r-rdpack): Update to 2.1.
 2020-12-09 22:03:31 +01:00
Ricardo Wurmus
bc08f4f41e
gnu: r-rbibutils: Update to 2.0. 
* gnu/packages/cran.scm (r-rbibutils): Update to 2.0.
[propagated-inputs]: Remove r-xml2.
 2020-12-09 22:03:31 +01:00
Ricardo Wurmus
df6c02d688
gnu: r-renv: Update to 0.12.3. 
* gnu/packages/cran.scm (r-renv): Update to 0.12.3.
 2020-12-09 22:03:31 +01:00
Ricardo Wurmus
964d8a8494
gnu: r-radiant-data: Update to 1.3.12. 
* gnu/packages/cran.scm (r-radiant-data): Update to 1.3.12.
 2020-12-09 22:03:31 +01:00
Ricardo Wurmus
e836f28835
gnu: r-tseries: Update to 0.10-48. 
* gnu/packages/cran.scm (r-tseries): Update to 0.10-48.
 2020-12-09 22:03:31 +01:00
Ricardo Wurmus
114a0fb5a5
gnu: r-quantmod: Update to 0.4.18. 
* gnu/packages/cran.scm (r-quantmod): Update to 0.4.18.
 2020-12-09 22:03:31 +01:00
Ricardo Wurmus
514848aebc
gnu: r-ifultools: Update to 2.0-22. 
* gnu/packages/cran.scm (r-ifultools): Update to 2.0-22.
 2020-12-09 22:03:31 +01:00
Ricardo Wurmus
d2be197fa5
gnu: r-tinytex: Update to 0.27. 
* gnu/packages/cran.scm (r-tinytex): Update to 0.27.
 2020-12-09 22:03:31 +01:00
Ricardo Wurmus
e0c8fc4623
gnu: r-pillar: Update to 1.4.7. 
* gnu/packages/cran.scm (r-pillar): Update to 1.4.7.
 2020-12-09 22:03:30 +01:00
Ricardo Wurmus
bb70fae499
gnu: r-vctrs: Update to 0.3.5. 
* gnu/packages/cran.scm (r-vctrs): Update to 0.3.5.
 2020-12-09 22:03:30 +01:00
Ricardo Wurmus
d4e67f37de
gnu: r-processx: Update to 3.4.5. 
* gnu/packages/cran.scm (r-processx): Update to 3.4.5.
 2020-12-09 22:03:30 +01:00
Ricardo Wurmus
86572c35c4
gnu: r-cli: Update to 2.2.0. 
* gnu/packages/cran.scm (r-cli): Update to 2.2.0.
 2020-12-09 22:03:30 +01:00
Ricardo Wurmus
841c3edf3c
gnu: r-hardyweinberg: Update to 1.6.9. 
* gnu/packages/cran.scm (r-hardyweinberg): Update to 1.6.9.
 2020-12-09 22:03:30 +01:00
Ricardo Wurmus
55a090deb4
gnu: r-mice: Update to 3.12.0. 
* gnu/packages/cran.scm (r-mice): Update to 3.12.0.
[propagated-inputs]: Add r-cpp11 and r-rlang.
 2020-12-09 22:03:30 +01:00
Ricardo Wurmus
cfd8779b22
gnu: r-recipes: Update to 0.1.15. 
* gnu/packages/cran.scm (r-recipes): Update to 0.1.15.
 2020-12-09 22:03:30 +01:00
Ricardo Wurmus
9597dc08b3
gnu: r-generics: Update to 0.1.0. 
* gnu/packages/cran.scm (r-generics): Update to 0.1.0.
 2020-12-09 22:03:30 +01:00
Ricardo Wurmus
1d8b53164e
gnu: r-lava: Update to 1.6.8.1. 
* gnu/packages/cran.scm (r-lava): Update to 1.6.8.1.
 2020-12-09 22:03:30 +01:00
Ricardo Wurmus
54dd6ce673
gnu: r-fitdistrplus: Update to 1.1-3. 
* gnu/packages/cran.scm (r-fitdistrplus): Update to 1.1-3.
 2020-12-09 22:03:29 +01:00
Ricardo Wurmus
89088dc1bb
gnu: r-inline: Update to 0.3.17. 
* gnu/packages/cran.scm (r-inline): Update to 0.3.17.
 2020-12-09 22:03:29 +01:00
Ricardo Wurmus
882d699ff2
gnu: r-extremes: Update to 2.1. 
* gnu/packages/cran.scm (r-extremes): Update to 2.1.
 2020-12-09 22:03:29 +01:00
Ricardo Wurmus
07cb317173
gnu: r-distillery: Update to 1.2. 
* gnu/packages/cran.scm (r-distillery): Update to 1.2.
 2020-12-09 22:03:29 +01:00
Ricardo Wurmus
bd69b54a55
gnu: r-circlize: Update to 0.4.11. 
* gnu/packages/cran.scm (r-circlize): Update to 0.4.11.
 2020-12-09 22:03:29 +01:00
Ricardo Wurmus
b1ad80e284
gnu: r-ps: Update to 1.5.0. 
* gnu/packages/cran.scm (r-ps): Update to 1.5.0.
 2020-12-09 22:03:29 +01:00
Ricardo Wurmus
327167bd50
gnu: r-colorspace: Update to 2.0-0. 
* gnu/packages/cran.scm (r-colorspace): Update to 2.0-0.
[native-inputs]: Add r-knitr.
 2020-12-09 22:03:29 +01:00
Ricardo Wurmus
0415a46fd9
gnu: r-shinyfiles: Update to 0.9.0. 
* gnu/packages/cran.scm (r-shinyfiles): Update to 0.9.0.
 2020-12-09 22:03:29 +01:00
Ricardo Wurmus
2b1abb4f43
gnu: r-vegan: Update to 2.5-7. 
* gnu/packages/cran.scm (r-vegan): Update to 2.5-7.
[propagated-inputs]: Remove r-knitr.
[native-inputs]: Add r-knitr.
 2020-12-09 22:03:29 +01:00
Ricardo Wurmus
9bf316fcaf
gnu: r-ggpmisc: Update to 0.3.7. 
* gnu/packages/cran.scm (r-ggpmisc): Update to 0.3.7.
 2020-12-09 22:03:28 +01:00
Ricardo Wurmus
17fa0953a8
gnu: r-ggalluvial: Update to 0.12.3. 
* gnu/packages/cran.scm (r-ggalluvial): Update to 0.12.3.
 2020-12-09 22:03:28 +01:00
Ricardo Wurmus
d856813829
gnu: r-v8: Update to 3.4.0. 
* gnu/packages/cran.scm (r-v8): Update to 3.4.0.
 2020-12-09 22:03:28 +01:00
Ricardo Wurmus
3e337d9bb7
gnu: r-rticles: Update to 0.17. 
* gnu/packages/cran.scm (r-rticles): Update to 0.17.
 2020-12-09 22:03:28 +01:00
Ricardo Wurmus
00a275fbf4
gnu: r-magrittr: Update to 2.0.1. 
* gnu/packages/statistics.scm (r-magrittr): Update to 2.0.1.
 2020-12-09 22:03:28 +01:00
Ricardo Wurmus
18ddbd474b
gnu: r-d3r: Update to 0.9.1. 
* gnu/packages/cran.scm (r-d3r): Update to 0.9.1.
[arguments]: Use esbuild for minification.
[native-inputs]: Add source for D3 version 6; replace uglify-js with esbuild.
 2020-12-09 22:03:28 +01:00
Ricardo Wurmus
d106e3e7f6
gnu: Add r-projpred. 
* gnu/packages/cran.scm (r-projpred): New variable.
 2020-12-09 22:03:28 +01:00
Ricardo Wurmus
fab49665bb
gnu: Add r-optimx. 
* gnu/packages/cran.scm (r-optimx): New variable.
 2020-12-09 22:03:28 +01:00
Ricardo Wurmus
8d15940f3c
gnu: Add r-gamm4. 
* gnu/packages/cran.scm (r-gamm4): New variable.
 2020-12-09 22:03:28 +01:00
Ricardo Wurmus
f0862a3578
gnu: Add r-fds. 
* gnu/packages/cran.scm (r-fds): New variable.
 2020-12-09 22:03:27 +01:00
Ricardo Wurmus
6279d2b6dd
gnu: Add r-rainbow. 
* gnu/packages/cran.scm (r-rainbow): New variable.
 2020-12-09 22:03:27 +01:00
Ricardo Wurmus
14caba7eeb
gnu: Add r-hdrcde. 
* gnu/packages/cran.scm (r-hdrcde): New variable.
 2020-12-09 22:03:27 +01:00
Ricardo Wurmus
feb7c4f6ca
gnu: Add r-ash. 
* gnu/packages/cran.scm (r-ash): New variable.
 2020-12-09 22:03:27 +01:00
Ricardo Wurmus
73545fde42
gnu: Add r-parallelly. 
* gnu/packages/cran.scm (r-parallelly): New variable.
 2020-12-09 22:03:27 +01:00
Ricardo Wurmus
9c3f5b2fa0
gnu: Add r-gitcreds. 
* gnu/packages/cran.scm (r-gitcreds): New variable.
 2020-12-09 22:03:27 +01:00
Ricardo Wurmus
71a732c35d
gnu: Add r-waldo. 
* gnu/packages/cran.scm (r-waldo): New variable.
 2020-12-09 22:03:27 +01:00
Ricardo Wurmus
24cf213edb
gnu: Add r-diffobj. 
* gnu/packages/cran.scm (r-diffobj): New variable.
 2020-12-09 22:03:27 +01:00
Ricardo Wurmus
bd5f751259
gnu: Add r-brio. 
* gnu/packages/cran.scm (r-brio): New variable.
 2020-12-09 22:03:26 +01:00
Leo Famulari
eaca440b65
gnu: python-llfuse: Update to 1.3.8. 
* gnu/packages/python-xyz.scm (python-llfuse): Update to 1.3.8.
 2020-12-09 15:41:25 -05:00
Eric Bavier
2a23e3f582
gnu: dealii: Update to 9.2.0. 
* gnu/packages/maths.scm (dealii): Update to 9.2.0.
 2020-12-09 13:42:05 -06:00
Eric Brown
e36291ef52
gnu: Add r-restrserve. 
* gnu/packages/cran.scm (r-restrserve): New variable.

Signed-off-by: Christopher Baines <mail@cbaines.net>
 2020-12-09 19:33:35 +00:00
Pierre Neidhardt
5f6a001933
gnu: Add kiwix-desktop. 
* gnu/packages/web.scm (kiwix-desktop): New variable.
 2020-12-09 18:25:32 +01:00
Pierre Neidhardt
acbf47a067
gnu: Add kiwix-lib. 
* gnu/packages/web.scm (kiwix-lib): New variable.
 2020-12-09 18:25:32 +01:00
Pierre Neidhardt
44308c8c5f
gnu: Add libzim. 
* gnu/packages/web.scm (libzim): New variable.
 2020-12-09 18:24:46 +01:00
Pierre Neidhardt
a294eecd98
gnu: Add emacs-helm-switch-to-repl. 
* gnu/packages/emacs-xyz.scm (emacs-helm-switch-to-repl): New variable.
 2020-12-09 17:27:51 +01:00
Nicolas Goaziou
5103459664
gnu: emacs-debbugs: Update to 0.27. 
* gnu/packages/emacs-xyz.scm (emacs-debbugs): Update to 0.27.
 2020-12-09 14:54:27 +01:00
Ludovic Courtès
3d85c3ec65
gnu: pciutils: Fix compilation error on GNU/Hurd. 
* gnu/packages/patches/pciutils-hurd-fix.patch: New file.
* gnu/local.mk (dist_patch_DATA): Add it.
* gnu/packages/pciutils.scm (pciutils)[arguments]: Add
'apply-hurd-patch' phase when (hurd-target?) is true.
[inputs]: Add "hurd-patch" entry when (hurd-target?) is true.
 2020-12-09 14:13:33 +01:00
Ludovic Courtès
f066e65713
services: guix-publish: Depend on 'avahi-daemon' when needed. 
* gnu/services/base.scm (guix-publish-shepherd-service): Add
'user-processes' to 'requirement'.  When ADVERTISE? is true, also add
'avahi-daemon'.
 2020-12-09 14:13:32 +01:00
Ludovic Courtès
59a6780f70
services: avahi: Depend on 'user-processes'. 
* gnu/services/avahi.scm (avahi-shepherd-service): Add 'user-processes'
to 'requirement'.
 2020-12-09 14:13:32 +01:00
Ricardo Wurmus
ebf11de4e3
gnu: r-diffbind: Update to 3.0.8. 
* gnu/packages/bioconductor.scm (r-diffbind): Update to 3.0.8.
 2020-12-09 12:12:48 +01:00
Ricardo Wurmus
4617cc7fd5
gnu: r-rhtslib: Propagate zlib. 
* gnu/packages/bioinformatics.scm (r-rhtslib)[inputs]: Move zlib from here...
[propagated-inputs]: ...to here.
(r-variantannotation, r-rsamtools, r-bamsignals, r-rhdf5,
r-methylkit)[inputs]: Remove zlib.
* gnu/packages/bioconductor.scm (r-diffbind, r-quasr, r-cytolib, r-ncdfflow,
r-flowworkspace, r-seqbias)[inputs]: Remove zlib.
 2020-12-09 12:12:48 +01:00
Ricardo Wurmus
7601015fc9
gnu: r-delayedmatrixstats: Update to 1.12.1. 
* gnu/packages/bioconductor.scm (r-delayedmatrixstats): Update to 1.12.1.
[propagated-inputs]: Add r-matrixgenerics.
 2020-12-09 12:12:48 +01:00
zimoun
cde035e67f
gnu: r-gqtlstats: Update to 1.21.3. 
* gnu/packages/bioinformatics.scm (r-gqtlstats): Update to 1.21.3.
 2020-12-09 12:12:48 +01:00
zimoun
6a4818716d
gnu: r-gqtlbase: Update to 1.21.1. 
Co-authored-by: Ricardo Wurmus <rekado@elephly.net>

* gnu/packages/bioinformatics.scm (r-gqtlbase): Update to 1.21.1.
[arguments]: Add phase to patch broken NAMESPACE file.
 2020-12-09 12:12:48 +01:00
zimoun
64f9fb308f
gnu: r-bigmelon: Update to 1.16.0. 
* gnu/packages/bioconductor.scm (r-bigmelon): Update to 1.16.0.
 2020-12-09 12:12:48 +01:00
zimoun
9f6e2bfe1f
gnu: r-watermelon: Update to 1.34.0. 
* gnu/packages/bioconductor.scm (r-watermelon): Update to 1.34.0.
 2020-12-09 12:12:47 +01:00
zimoun
8db36c1f68
gnu: r-yarn: Update to 1.16.0. 
* gnu/packages/bioconductor.scm (r-yarn): Update to 1.16.0.
 2020-12-09 12:12:47 +01:00
zimoun
adf6edc750
gnu: r-quantro: Update to 1.24.0. 
* gnu/packages/bioconductor.scm (r-quantro): Update to 1.24.0.
 2020-12-09 12:12:47 +01:00
zimoun
4eeaa159d2
gnu: r-lumi: Update to 2.42.0. 
* gnu/packages/bioconductor.scm (r-lumi): Update to 2.42.0.
 2020-12-09 12:12:47 +01:00
zimoun
0b7dd44706
gnu: r-methylumi: Update to 2.36.0. 
* gnu/packages/bioconductor.scm (r-methylumi): Update to 2.36.0.
 2020-12-09 12:12:47 +01:00
zimoun
e5a4198bc3
gnu: r-minfi: Update to 1.36.0. 
* gnu/packages/bioconductor.scm (r-minfi): Update to 1.36.0.
 2020-12-09 12:12:47 +01:00
zimoun
45dfb75166
gnu: Add r-catalyst. 
* gnu/packages/bioconductor.scm (r-catalyst): New variable.
 2020-12-09 12:12:47 +01:00
zimoun
43bf50ecae
gnu: r-ggcyto: Update to 1.18.0. 
* gnu/packages/bioconductor.scm (r-ggcyto): Update to 1.18.0.
 2020-12-09 12:12:47 +01:00
zimoun
b856a48768
gnu: r-scdd: Update to 1.14.0. 
* gnu/packages/bioconductor.scm (r-scdd): Update to 1.14.0.
 2020-12-09 12:12:47 +01:00
zimoun
3f04b8167b
gnu: r-chipcomp: Update to 1.20.0. 
* gnu/packages/bioconductor.scm (r-chipcomp): Update to 1.20.0.
 2020-12-09 12:12:47 +01:00
zimoun
1174317e03
gnu: r-pcatools: Update to 2.2.0. 
* gnu/packages/bioconductor.scm (r-pcatools): Update to 2.2.0.
 2020-12-09 12:12:47 +01:00
zimoun
970984237a
gnu: r-biocviews: Update to 1.58.1. 
* gnu/packages/bioinformatics.scm (r-biocviews): Update to 1.58.1.

Co-authored-by: Ricardo Wurmus <reka@elephly.net>.
 2020-12-09 12:12:47 +01:00
zimoun
b03c955c6f
gnu: r-scran: Update to 1.18.0. 
* gnu/packages/bioconductor.scm (r-scran): Update to 1.18.0.
[propagated-inputs]: Add r-bluster, r-scuttle.  Remove r-iranges.

Co-authored-by: Ricardo Wurmus <reka@elephly.net>.
 2020-12-09 12:12:47 +01:00
zimoun
d4b5d18684
gnu: r-scater: Update to 1.18.3. 
* gnu/packages/bioconductor.scm (r-scater): Update to 1.18.3.
[propagated-inputs]: Add r-gridextra, r-scutlle.  Remove r-beachmat, r-rcpp.

Co-authored-by: Ricardo Wurmus <reka@elephly.net>.
 2020-12-09 12:12:46 +01:00
Ricardo Wurmus
0e60dda0ae
gnu: Add r-scuttle. 
* gnu/packages/bioconductor.scm (r-scuttle): New variable.
 2020-12-09 12:12:46 +01:00
zimoun
10c87ecf77
gnu: r-delayedmatrixstats: Update to 1.12.0. 
* gnu/packages/bioconductor.scm (r-delayedmatrixstats): Update to 1.12.0.

Co-authored-by: Ricardo Wurmus <rekado@elephly.net>.
 2020-12-09 12:12:46 +01:00
zimoun
53affb349a
gnu: r-rhdf5: Update to 2.34.0. 
* gnu/packages/bioinformatics.scm (r-rhdf5): Update to 2.34.0.
[propagated-inputs]: Add r-rhdf5filters.
[arguments]: Avoid to have a plain directory on the list of libraries to
link.

Co-authored-by: Ricardo Wurmus <reka@elephly.net>.
 2020-12-09 12:12:46 +01:00
Ricardo Wurmus
86fcceeae1
gnu: Add r-rhdf5filters. 
* gnu/packages/bioinformatics.scm (r-rhdf5filters): New variable.
 2020-12-09 12:12:46 +01:00
zimoun
4ef898d449
gnu: r-singlecellexperiment: Update to 1.12.0. 
* gnu/packages/bioconductor.scm (r-singlecellexperiment): Update to 1.12.0.
 2020-12-09 12:12:46 +01:00
zimoun
d0db04fcaf
gnu: r-yapsa: Update to 1.16.0. 
* gnu/packages/bioconductor.scm (r-yapsa): Update to 1.16.0.
 2020-12-09 12:12:46 +01:00
zimoun
798ec28916
gnu: r-biocsingular: Update to 1.6.0. 
* gnu/packages/bioconductor.scm (r-biocsingular): Update to 1.6.0.
 2020-12-09 12:12:46 +01:00
zimoun
dd9341ffa3
gnu: r-genomicinteractions: Update to 1.24.0. 
* gnu/packages/bioconductor.scm (r-genomicinteractions): Update to 1.24.0.
 2020-12-09 12:12:46 +01:00
zimoun
35dae95110
gnu: r-interactionset: Update to 1.18.0. 
* gnu/packages/bioconductor.scm (r-interactionset): Update to 1.18.0.
 2020-12-09 12:12:46 +01:00
zimoun
60ad3c7b3b
gnu: r-genomationdata: Update to 1.22.0. 
* gnu/packages/bioinformatics.scm (r-genomationdata): Update to 1.22.0.
 2020-12-09 12:12:46 +01:00
Ricardo Wurmus
5e719988f2
gnu: Add r-sparsematrixstats. 
* gnu/packages/bioconductor.scm (r-sparsematrixstats): New variable.
 2020-12-09 12:12:46 +01:00
Roel Janssen
a23310ffc2
gnu: Add r-bluster. 
* gnu/packages/bioconductor.scm (r-bluster): New variable.
 2020-12-09 12:12:45 +01:00
Roel Janssen
aca4ebe40a
gnu: r-annaffy: Update to 1.62.0. 
* gnu/packages/bioconductor.scm (r-annaffy): Update to 1.62.0.
 2020-12-09 12:12:45 +01:00
zimoun
e707820442
gnu: r-sushi: Update to 1.28.0. 
* gnu/packages/bioinformatics.scm (r-sushi): Update to 1.28.0.
 2020-12-09 12:12:45 +01:00
zimoun
83129edfb7
gnu: r-gwascat: Update to 2.22.0. 
* gnu/packages/bioinformatics.scm (r-gwascat): Update to 2.22.0.
[propagated-inputs]: Add r-biocfilecache, r-readr, r-snpstats, and
r-variantannotation; remove r-biocgenerics, r-ggplot2, r-rsamtools, and
r-rtracklayer.
 2020-12-09 12:12:45 +01:00
zimoun
717e53fdc0
gnu: r-gviz: Update to 1.34.0. 
* gnu/packages/bioinformatics.scm (r-gviz): Update to 1.34.0.
 2020-12-09 12:12:45 +01:00
zimoun
0a8d08e887
gnu: r-ldblock: Update to 1.20.0. 
* gnu/packages/bioinformatics.scm (r-ldblock): Update to 1.20.0.
 2020-12-09 12:12:45 +01:00
zimoun
494010ad3e
gnu: r-erma: Update to 1.6.0. 
* gnu/packages/bioinformatics.scm (r-erma): Update to 1.6.0.
 2020-12-09 12:12:45 +01:00
zimoun
6e338901bf
gnu: r-snpstats: Update to 1.40.0. 
* gnu/packages/bioinformatics.scm (r-snpstats): Update to 1.40.0.
 2020-12-09 12:12:45 +01:00
zimoun
74a11b21be
gnu: r-ggbio: Update to 1.38.0. 
* gnu/packages/bioinformatics.scm (r-ggbio): Update to 1.38.0.
 2020-12-09 12:12:45 +01:00
zimoun
3c6eecdeed
gnu: r-biovizbase: Update to 1.38.0. 
* gnu/packages/bioinformatics.scm (r-biovizbase): Update to 1.38.0.
 2020-12-09 12:12:45 +01:00
zimoun
6e182c237a
gnu: r-organismdbi: Update to 1.32.0. 
* gnu/packages/bioinformatics.scm (r-organismdbi): Update to 1.32.0.
 2020-12-09 12:12:44 +01:00
zimoun
06fe3b7a53
gnu: r-ensembldb: Update to 2.14.0. 
* gnu/packages/bioinformatics.scm (r-ensembldb): Update to 2.14.0.
 2020-12-09 12:12:44 +01:00
zimoun
8962a13afe
gnu: r-dirichletmultinomial: Update to 1.32.0. 
* gnu/packages/bioinformatics.scm (r-dirichletmultinomial): Update to 1.32.0.
 2020-12-09 12:12:44 +01:00
Roel Janssen
4ef1e375b4
gnu: r-complexheatmap: Update to 2.6.2. 
* gnu/packages/bioinformatics.scm (r-complexheatmap): Update to 2.6.2;
[propagated-inputs]: Add r-cairo, r-digest, r-iranges, r-matrixstats, and
r-s4vectors.
 2020-12-09 12:12:44 +01:00
zimoun
0fde2f9ad2
gnu: r-genomicfiles: Update to 1.26.0. 
* gnu/packages/bioinformatics.scm (r-genomicfiles): Update to 1.26.0.
[propagated-inputs]: Add r-matrixgenerics.
 2020-12-09 12:12:44 +01:00
zimoun
78cadd0fef
gnu: r-gage: Update to 2.40.0. 
* gnu/packages/bioinformatics.scm (r-gage): Update to 2.40.0.
 2020-12-09 12:12:44 +01:00
zimoun
143437c623
gnu: r-keggrest: Update to 1.30.0. 
* gnu/packages/bioinformatics.scm (r-keggrest): Update to 1.30.0.
 2020-12-09 12:12:44 +01:00
zimoun
b6dd0722c8
gnu: r-fastseg: Update to 1.36.0. 
* gnu/packages/bioinformatics.scm (r-fastseg): Update to 1.36.0.
 2020-12-09 12:12:44 +01:00
zimoun
a9dc755e67
gnu: r-annotationhub: Update to 2.22.0. 
* gnu/packages/bioinformatics.scm (r-annotationhub): Update to 2.22.0.
 2020-12-09 12:12:43 +01:00
zimoun
3becce3ff3
gnu: r-interactivedisplaybase: Update to 1.28.0. 
* gnu/packages/bioinformatics.scm (r-interactivedisplaybase): Update to 1.28.0.
 2020-12-09 12:12:43 +01:00
zimoun
8e55b9f502
gnu: r-edaseq: Update to 2.24.0. 
* gnu/packages/bioinformatics.scm (r-edaseq): Update to 2.24.0.
 2020-12-09 12:12:43 +01:00
zimoun
8db8a683b9
gnu: r-aroma-light: Update to 3.20.0. 
* gnu/packages/bioinformatics.scm (r-aroma-light): Update to 3.20.0.
 2020-12-09 12:12:43 +01:00
zimoun
971f3a377c
gnu: r-msnid: Update to 1.24.0. 
* gnu/packages/bioinformatics.scm (r-msnid): Update to 1.24.0.
[propagated-inputs]: Add r-annotationdbi, r-annotationhub, r-biocgenerics,
r-biocstyle, r-biostrings, r-ggplot2, r-msmstests, r-purrr, r-rlang, r-runit,
r-stringr, r-tibble, and r-xtable.
 2020-12-09 12:12:43 +01:00
zimoun
16f16b5e21
gnu: Add r-msmstests. 
* gnu/packages/bioconductor.scm (r-msmstests): New variable.
 2020-12-09 12:12:43 +01:00
zimoun
e520c68fa9
gnu: Add r-msmseda. 
* gnu/packages/bioconductor.scm (r-msmseq): New variable.
 2020-12-09 12:12:43 +01:00
zimoun
2ed937e0aa
gnu: r-pcamethods: Update to 1.82.0. 
* gnu/packages/bioinformatics.scm (r-pcamethods): Update to 1.82.0.
 2020-12-09 12:12:43 +01:00
zimoun
b47560c1cf
gnu: r-mzid: Update to 1.28.0. 
* gnu/packages/bioinformatics.scm (r-mzid): Update to 1.28.0.
[propagated-inputs]: Remove r-rcpp.
 2020-12-09 12:12:43 +01:00
zimoun
75bdab83cc
gnu: r-vsn: Update to 3.58.0. 
* gnu/packages/bioinformatics.scm (r-vsn): Update to 3.58.0.
 2020-12-09 12:12:42 +01:00
zimoun
6a6f38b89e
gnu: r-affy: Update to 1.68.0. 
* gnu/packages/bioinformatics.scm (r-affy): Update to 1.68.0.
 2020-12-09 12:12:42 +01:00
zimoun
d6750c6587
gnu: r-affyio: Update to 1.60.0. 
* gnu/packages/bioinformatics.scm (r-affyio): Update to 1.60.0.
 2020-12-09 12:12:42 +01:00
Ricardo Wurmus
471ceb5e5e
gnu: r-mzr: Fix linking. 
* gnu/packages/bioinformatics.scm (r-mzr)[arguments]: Fix linking with rhdf5
libraries.
 2020-12-09 12:12:42 +01:00
Ricardo Wurmus
badb4678bd
gnu: r-mzr: Update to 2.24.1. 
* gnu/packages/bioinformatics.scm (r-mzr): Update to 2.24.1.
 2020-12-09 12:12:42 +01:00
zimoun
4d9e168db8
gnu: r-protgenerics: Update to 1.22.0. 
* gnu/packages/bioinformatics.scm (r-protgenerics): Update to 1.22.0.
 2020-12-09 12:12:42 +01:00
zimoun
858eb988a0
gnu: r-sva: Update to 3.38.0. 
* gnu/packages/bioinformatics.scm (r-sva): Update to 3.38.0.
 2020-12-09 12:12:42 +01:00
zimoun
99bd4f2d7c
gnu: r-methylkit: Update to 1.16.0. 
* gnu/packages/bioinformatics.scm (r-methylkit): Update to 1.16.0.
 2020-12-09 12:12:42 +01:00
zimoun
2ed79a0a42
gnu: r-copywriter: Update to 2.22.0. 
* gnu/packages/bioinformatics.scm (r-copywriter): Update to 2.22.0.
 2020-12-09 12:12:41 +01:00
zimoun
36fd725b6f
gnu: r-chipseq: Update to 1.40.0. 
* gnu/packages/bioinformatics.scm (r-chipseq): Update to 1.40.0.
 2020-12-09 12:12:41 +01:00
zimoun
cad3eb4eb4
gnu: r-annotationfilter: Update to 1.14.0. 
* gnu/packages/bioinformatics.scm (r-annotationfilter): Update to 1.14.0.
 2020-12-09 12:12:41 +01:00
zimoun
ec0050c0a9
gnu: r-tximport: Update to 1.18.0. 
* gnu/packages/bioinformatics.scm (r-tximport): Update to 1.18.0.
 2020-12-09 12:12:41 +01:00
Roel Janssen
6d5a4dd0a7
gnu: r-mutationalpatterns: Update to 3.0.1. 
* gnu/packages/bioinformatics.scm (r-mutationalpatterns): Update to 3.0.1.
[native-inputs]: Add r-knitr.
[propagated-inputs]: Add r-bsgenome, r-dplyr, r-ggalluvial,
r-magrittr, r-purrr, r-stringr, r-tibble, and r-tidyr; remove
r-reshape2 and r-summarizedexperiment.
 2020-12-09 12:12:41 +01:00
zimoun
a823a74525
gnu: r-rcas: Update to 1.16.0. 
* gnu/packages/bioinformatics.scm (r-rcas): Update to 1.16.0.
 2020-12-09 12:12:41 +01:00
zimoun
2c15a1c502
gnu: r-bamsignals: Update to 1.22.0. 
* gnu/packages/bioinformatics.scm (r-bamsignals): Update to 1.22.0.
 2020-12-09 12:12:41 +01:00
zimoun
728369634f
gnu: r-rhtslib: Update to 1.22.0. 
* gnu/packages/bioinformatics.scm (r-rhtslib): Update to 1.22.0.
 2020-12-09 12:12:41 +01:00
zimoun
b0d85e36f1
gnu: r-zlibbioc: Update to 1.36.0. 
* gnu/packages/bioinformatics.scm (r-zlibbioc): Update to 1.36.0.
 2020-12-09 12:12:40 +01:00
zimoun
329879b70c
gnu: r-seqlogo: Update to 1.56.0. 
* gnu/packages/bioinformatics.scm (r-seqlogo): Update to 1.56.0.
 2020-12-09 12:12:40 +01:00