Commit Graph

2281 Commits

Author SHA1 Message Date
Ricardo Wurmus
101cad4791
gnu: r-flowstats: Update to 4.6.0.
* gnu/packages/bioconductor.scm (r-flowstats): Update to 4.6.0.
2021-11-07 22:34:51 +00:00
Ricardo Wurmus
42df07647a
gnu: r-flowworkspace: Update to 4.6.0.
* gnu/packages/bioconductor.scm (r-flowworkspace): Update to 4.6.0.
2021-11-07 22:34:51 +00:00
Ricardo Wurmus
a27ff891a6
gnu: r-rprotobuflib: Update to 2.6.0.
* gnu/packages/bioconductor.scm (r-rprotobuflib): Update to 2.6.0.
2021-11-07 22:34:51 +00:00
Ricardo Wurmus
007e62be63
gnu: r-flowclust: Update to 3.32.0.
* gnu/packages/bioconductor.scm (r-flowclust): Update to 3.32.0.
[inputs]: Remove gsl.
2021-11-07 22:34:51 +00:00
Ricardo Wurmus
3bffe05708
gnu: r-flowviz: Update to 1.58.0.
* gnu/packages/bioconductor.scm (r-flowviz): Update to 1.58.0.
2021-11-07 22:34:51 +00:00
Ricardo Wurmus
833c945998
gnu: r-ggcyto: Update to 1.22.0.
* gnu/packages/bioconductor.scm (r-ggcyto): Update to 1.22.0.
2021-11-07 22:34:51 +00:00
Ricardo Wurmus
224eccca7a
gnu: r-ncdfflow: Update to 2.40.0.
* gnu/packages/bioconductor.scm (r-ncdfflow): Update to 2.40.0.
2021-11-07 22:34:50 +00:00
Ricardo Wurmus
9e01b4118e
gnu: r-flowmeans: Update to 1.54.0.
* gnu/packages/bioconductor.scm (r-flowmeans): Update to 1.54.0.
2021-11-07 22:34:50 +00:00
Ricardo Wurmus
fe947b3c0e
gnu: r-flowcore: Update to 2.6.0.
* gnu/packages/bioconductor.scm (r-flowcore): Update to 2.6.0.
2021-11-07 22:34:50 +00:00
Ricardo Wurmus
6e07dec942
gnu: r-cytolib: Update to 2.6.0.
* gnu/packages/bioconductor.scm (r-cytolib): Update to 2.6.0.
2021-11-07 22:34:50 +00:00
Ricardo Wurmus
9e3ee89786
gnu: r-consensusclusterplus: Update to 1.58.0.
* gnu/packages/bioconductor.scm (r-consensusclusterplus): Update to 1.58.0.
2021-11-07 22:34:50 +00:00
Ricardo Wurmus
311adddab3
gnu: r-flowutils: Update to 1.58.0.
* gnu/packages/bioconductor.scm (r-flowutils): Update to 1.58.0.
2021-11-07 22:34:50 +00:00
Ricardo Wurmus
c58ed007a2
gnu: r-rsubread: Update to 2.8.0.
* gnu/packages/bioconductor.scm (r-rsubread): Update to 2.8.0.
2021-11-07 22:34:50 +00:00
Ricardo Wurmus
4940f6d680
gnu: r-annotatr: Update to 1.20.0.
* gnu/packages/bioconductor.scm (r-annotatr): Update to 1.20.0.
2021-11-07 22:34:50 +00:00
Ricardo Wurmus
b960dc7be5
gnu: r-biosigner: Update to 1.22.0.
* gnu/packages/bioconductor.scm (r-biosigner): Update to 1.22.0.
2021-11-07 22:34:50 +00:00
Ricardo Wurmus
1e2401b767
gnu: r-ropls: Update to 1.26.0.
* gnu/packages/bioconductor.scm (r-ropls): Update to 1.26.0.
2021-11-07 22:34:50 +00:00
Ricardo Wurmus
970e3e291e
gnu: r-multidataset: Update to 1.22.0.
* gnu/packages/bioconductor.scm (r-multidataset): Update to 1.22.0.
2021-11-07 22:34:50 +00:00
Ricardo Wurmus
505b5d2685
gnu: r-birewire: Update to 3.26.0.
* gnu/packages/bioconductor.scm (r-birewire): Update to 3.26.0.
2021-11-07 22:34:50 +00:00
Ricardo Wurmus
c3ce59c624
gnu: r-rqc: Update to 1.28.0.
* gnu/packages/bioconductor.scm (r-rqc): Update to 1.28.0.
2021-11-07 22:34:50 +00:00
Ricardo Wurmus
e2aa710ca4
gnu: r-quasr: Update to 1.34.0.
* gnu/packages/bioconductor.scm (r-quasr): Update to 1.34.0.
[propagated-inputs]: Remove r-biocmanager.
2021-11-07 22:34:49 +00:00
Ricardo Wurmus
80980d827a
gnu: r-rhisat2: Update to 1.10.0.
* gnu/packages/bioconductor.scm (r-rhisat2): Update to 1.10.0.
2021-11-07 22:34:49 +00:00
Ricardo Wurmus
0187dd1a1d
gnu: r-sgseq: Update to 1.28.0.
* gnu/packages/bioconductor.scm (r-sgseq): Update to 1.28.0.
2021-11-07 22:34:49 +00:00
Ricardo Wurmus
1b455ccb4b
gnu: r-rbowtie: Update to 1.34.0.
* gnu/packages/bioconductor.scm (r-rbowtie): Update to 1.34.0.
[inputs]: Remove zlib.
2021-11-07 22:34:49 +00:00
Ricardo Wurmus
0e507e0059
gnu: r-iclusterplus: Update to 1.30.0.
* gnu/packages/bioconductor.scm (r-iclusterplus): Update to 1.30.0.
2021-11-07 22:34:49 +00:00
Ricardo Wurmus
f592a0a4ee
gnu: r-biocfilecache: Update to 2.2.0.
* gnu/packages/bioconductor.scm (r-biocfilecache): Update to 2.2.0.
2021-11-07 22:34:49 +00:00
Ricardo Wurmus
2a9f215cd1
gnu: r-arrmnormalization: Update to 1.34.0.
* gnu/packages/bioconductor.scm (r-arrmnormalization): Update to 1.34.0.
2021-11-07 22:34:49 +00:00
Ricardo Wurmus
5d77708905
gnu: r-progeny: Update to 1.16.0.
* gnu/packages/bioconductor.scm (r-progeny): Update to 1.16.0.
2021-11-07 22:34:49 +00:00
Ricardo Wurmus
ba9573b14e
gnu: r-rbowtie2: Update to 2.0.0.
* gnu/packages/bioconductor.scm (r-rbowtie2): Update to 2.0.0.
[inputs]: Add samtools.
[propagated-inputs]: Add r-magrittr and r-rsamtools.
2021-11-07 22:34:49 +00:00
Ricardo Wurmus
efbe72addb
gnu: r-zfpkm: Update to 1.16.0.
* gnu/packages/bioconductor.scm (r-zfpkm): Update to 1.16.0.
2021-11-07 22:34:49 +00:00
Ricardo Wurmus
eb5f243f1b
gnu: r-zinbwave: Update to 1.16.0.
* gnu/packages/bioconductor.scm (r-zinbwave): Update to 1.16.0.
2021-11-07 22:34:49 +00:00
Ricardo Wurmus
d43703c41a
gnu: r-webbioc: Update to 1.66.0.
* gnu/packages/bioconductor.scm (r-webbioc): Update to 1.66.0.
2021-11-07 22:34:49 +00:00
Ricardo Wurmus
b058ff1f75
gnu: r-widgettools: Update to 1.72.0.
* gnu/packages/bioconductor.scm (r-widgettools): Update to 1.72.0.
2021-11-07 22:34:49 +00:00
Ricardo Wurmus
a4ab371edf
gnu: r-wiggleplotr: Update to 1.18.0.
* gnu/packages/bioconductor.scm (r-wiggleplotr): Update to 1.18.0.
2021-11-07 22:34:49 +00:00
Ricardo Wurmus
2704f4d596
gnu: r-wrench: Update to 1.12.0.
* gnu/packages/bioconductor.scm (r-wrench): Update to 1.12.0.
2021-11-07 22:34:49 +00:00
Ricardo Wurmus
e06acf2682
gnu: r-xcms: Update to 3.16.0.
* gnu/packages/bioconductor.scm (r-xcms): Update to 3.16.0.
[propagated-inputs]: Add r-msfeatures.
2021-11-07 22:34:48 +00:00
Ricardo Wurmus
482cec7a53
gnu: r-massspecwavelet: Update to 1.60.0.
* gnu/packages/bioconductor.scm (r-massspecwavelet): Update to 1.60.0.
2021-11-07 22:34:48 +00:00
Ricardo Wurmus
972e9f4224
gnu: r-roar: Update to 1.30.0.
* gnu/packages/bioconductor.scm (r-roar): Update to 1.30.0.
2021-11-07 22:34:48 +00:00
Ricardo Wurmus
b00d8a1e74
gnu: r-yarn: Update to 1.20.0.
* gnu/packages/bioconductor.scm (r-yarn): Update to 1.20.0.
2021-11-07 22:34:48 +00:00
Ricardo Wurmus
13d51fe643
gnu: r-quantro: Update to 1.28.0.
* gnu/packages/bioconductor.scm (r-quantro): Update to 1.28.0.
2021-11-07 22:34:48 +00:00
Ricardo Wurmus
7fc5084e00
gnu: r-gcrma: Update to 2.66.0.
* gnu/packages/bioconductor.scm (r-gcrma): Update to 2.66.0.
2021-11-07 22:34:48 +00:00
Ricardo Wurmus
240e1f0598
gnu: r-yapsa: Update to 1.19.0.
* gnu/packages/bioconductor.scm (r-yapsa): Update to 1.19.0.
2021-11-07 22:34:48 +00:00
Ricardo Wurmus
2b769d0981
gnu: r-somaticsignatures: Update to 2.30.0.
* gnu/packages/bioconductor.scm (r-somaticsignatures): Update to 2.30.0.
2021-11-07 22:34:48 +00:00
Ricardo Wurmus
cb48316936
gnu: r-gtrellis: Update to 1.26.0.
* gnu/packages/bioconductor.scm (r-gtrellis): Update to 1.26.0.
2021-11-07 22:34:48 +00:00
Ricardo Wurmus
6a4b381268
gnu: r-yamss: Update to 1.20.0.
* gnu/packages/bioconductor.scm (r-yamss): Update to 1.20.0.
2021-11-07 22:34:48 +00:00
Ricardo Wurmus
4c18a6b644
gnu: r-ebimage: Update to 4.36.0.
* gnu/packages/bioconductor.scm (r-ebimage): Update to 4.36.0.
2021-11-07 22:34:48 +00:00
Ricardo Wurmus
a69776dcb5
gnu: r-aucell: Update to 1.16.0.
* gnu/packages/bioconductor.scm (r-aucell): Update to 1.16.0.
2021-11-07 22:34:48 +00:00
Ricardo Wurmus
7b6e7ac7bf
gnu: r-allelicimbalance: Update to 1.32.0.
* gnu/packages/bioconductor.scm (r-allelicimbalance): Update to 1.32.0.
2021-11-07 22:34:48 +00:00
Ricardo Wurmus
776c53a967
gnu: r-annotationtools: Update to 1.68.0.
* gnu/packages/bioconductor.scm (r-annotationtools): Update to 1.68.0.
2021-11-07 22:34:48 +00:00
Ricardo Wurmus
e79f4779ce
gnu: r-abaenrichment: Update to 1.24.0.
* gnu/packages/bioconductor.scm (r-abaenrichment): Update to 1.24.0.
2021-11-07 22:34:48 +00:00
Ricardo Wurmus
b7057dbac6
gnu: r-gofuncr: Update to 1.14.0.
* gnu/packages/bioconductor.scm (r-gofuncr): Update to 1.14.0.
2021-11-07 22:34:47 +00:00
Ricardo Wurmus
46de5a7503
gnu: r-atacseqqc: Update to 1.18.0.
* gnu/packages/bioconductor.scm (r-atacseqqc): Update to 1.18.0.
2021-11-07 22:34:47 +00:00
Ricardo Wurmus
2ba1756960
gnu: r-genomicscores: Update to 2.6.0.
* gnu/packages/bioconductor.scm (r-genomicscores): Update to 2.6.0.
2021-11-07 22:34:47 +00:00
Ricardo Wurmus
0b8b2b63a2
gnu: r-motifstack: Update to 1.38.0.
* gnu/packages/bioconductor.scm (r-motifstack): Update to 1.38.0.
2021-11-07 22:34:47 +00:00
Ricardo Wurmus
9a27f82d03
gnu: r-motifbreakr: Update to 2.8.0.
* gnu/packages/bioconductor.scm (r-motifbreakr): Update to 2.8.0.
2021-11-07 22:34:47 +00:00
Ricardo Wurmus
a906e93378
gnu: r-motifdb: Update to 1.36.0.
* gnu/packages/bioconductor.scm (r-motifdb): Update to 1.36.0.
2021-11-07 22:34:47 +00:00
Ricardo Wurmus
38ca6643c4
gnu: r-rgadem: Update to 2.42.0.
* gnu/packages/bioconductor.scm (r-rgadem): Update to 2.42.0.
2021-11-07 22:34:47 +00:00
Ricardo Wurmus
4f6f03fd6e
gnu: r-bacon: Update to 1.22.0.
* gnu/packages/bioconductor.scm (r-bacon): Update to 1.22.0.
2021-11-07 22:34:47 +00:00
Ricardo Wurmus
6b27532fea
gnu: r-abseqr: Update to 1.12.0.
* gnu/packages/bioconductor.scm (r-abseqr): Update to 1.12.0.
2021-11-07 22:34:47 +00:00
Ricardo Wurmus
172cddcbec
gnu: r-a4: Update to 1.42.0.
* gnu/packages/bioconductor.scm (r-a4): Update to 1.42.0.
2021-11-07 22:34:47 +00:00
Ricardo Wurmus
c0207d4f7c
gnu: r-a4base: Update to 1.42.0.
* gnu/packages/bioconductor.scm (r-a4base): Update to 1.42.0.
2021-11-07 22:34:47 +00:00
Ricardo Wurmus
9b249fc8a9
gnu: r-a4reporting: Update to 1.42.0.
* gnu/packages/bioconductor.scm (r-a4reporting): Update to 1.42.0.
2021-11-07 22:34:47 +00:00
Ricardo Wurmus
0b06e8ee13
gnu: r-a4preproc: Update to 1.42.0.
* gnu/packages/bioconductor.scm (r-a4preproc): Update to 1.42.0.
2021-11-07 22:34:47 +00:00
Ricardo Wurmus
c179aae47e
gnu: r-a4classif: Update to 1.42.0.
* gnu/packages/bioconductor.scm (r-a4classif): Update to 1.42.0.
2021-11-07 22:34:47 +00:00
Ricardo Wurmus
5785c45e01
gnu: r-a4core: Update to 1.42.0.
* gnu/packages/bioconductor.scm (r-a4core): Update to 1.42.0.
2021-11-07 22:34:46 +00:00
Ricardo Wurmus
85c2a802f9
gnu: r-annaffy: Update to 1.66.0.
* gnu/packages/bioconductor.scm (r-annaffy): Update to 1.66.0.
2021-11-07 22:34:46 +00:00
Ricardo Wurmus
58c2b7978f
gnu: r-mlinterfaces: Update to 1.74.0.
* gnu/packages/bioconductor.scm (r-mlinterfaces): Update to 1.74.0.
2021-11-07 22:34:46 +00:00
Ricardo Wurmus
b4127b3490
gnu: r-clusterexperiment: Update to 2.14.0.
* gnu/packages/bioconductor.scm (r-clusterexperiment): Update to 2.14.0.
2021-11-07 22:34:46 +00:00
Ricardo Wurmus
2e9821cd11
gnu: r-clusterprofiler: Update to 4.2.0.
* gnu/packages/bioconductor.scm (r-clusterprofiler): Update to 4.2.0.
2021-11-07 22:34:46 +00:00
Ricardo Wurmus
498f45bcad
gnu: r-enrichplot: Update to 1.14.1.
* gnu/packages/bioconductor.scm (r-enrichplot): Update to 1.14.1.
[propagated-inputs]: Remove r-cowplot; add r-aplot and r-yulab-utils.
2021-11-07 22:34:46 +00:00
Ricardo Wurmus
9b6dee4c0d
gnu: r-dose: Update to 3.20.0.
* gnu/packages/bioconductor.scm (r-dose): Update to 3.20.0.
2021-11-07 22:34:46 +00:00
Ricardo Wurmus
6dbc856518
gnu: r-fgsea: Update to 1.20.0.
* gnu/packages/bioconductor.scm (r-fgsea): Update to 1.20.0.
2021-11-07 22:34:46 +00:00
Ricardo Wurmus
bca9a6b4c1
gnu: r-fcscan: Update to 1.8.0.
* gnu/packages/bioconductor.scm (r-fcscan): Update to 1.8.0.
[propagated-inputs]: Add r-doparallel and r-foreach.
2021-11-07 22:34:46 +00:00
Ricardo Wurmus
7ac356d337
gnu: r-sigpathway: Update to 1.62.0.
* gnu/packages/bioconductor.scm (r-sigpathway): Update to 1.62.0.
2021-11-07 22:34:46 +00:00
Ricardo Wurmus
bc406e02bb
gnu: r-anota: Update to 1.42.0.
* gnu/packages/bioconductor.scm (r-anota): Update to 1.42.0.
2021-11-07 22:34:46 +00:00
Ricardo Wurmus
46c97a358f
gnu: r-gosemsim: Update to 2.20.0.
* gnu/packages/bioconductor.scm (r-gosemsim): Update to 2.20.0.
2021-11-07 22:34:46 +00:00
Ricardo Wurmus
75f1085c2f
gnu: r-heatplus: Update to 3.2.0.
* gnu/packages/bioconductor.scm (r-heatplus): Update to 3.2.0.
2021-11-07 22:34:46 +00:00
Ricardo Wurmus
a2b346ab13
gnu: r-varianttools: Update to 1.36.0.
* gnu/packages/bioconductor.scm (r-varianttools): Update to 1.36.0.
2021-11-07 22:34:46 +00:00
Ricardo Wurmus
07e49dac6f
gnu: r-tradeseq: Update to 1.8.0.
* gnu/packages/bioconductor.scm (r-tradeseq): Update to 1.8.0.
[propagated-inputs]: Remove r-monocle; add r-mass and r-trajectoryutils.
2021-11-07 22:34:46 +00:00
Ricardo Wurmus
06c89769c6
gnu: r-ioniser: Update to 2.18.0.
* gnu/packages/bioconductor.scm (r-ioniser): Update to 2.18.0.
2021-11-07 22:34:46 +00:00
Ricardo Wurmus
327371f61f
gnu: r-linnorm: Update to 2.18.0.
* gnu/packages/bioconductor.scm (r-linnorm): Update to 2.18.0.
2021-11-07 22:34:45 +00:00
Ricardo Wurmus
f151723cb6
gnu: r-lumi: Update to 2.46.0.
* gnu/packages/bioconductor.scm (r-lumi): Update to 2.46.0.
2021-11-07 22:34:45 +00:00
Ricardo Wurmus
d9c9ec4396
gnu: r-methylumi: Update to 2.40.1.
* gnu/packages/bioconductor.scm (r-methylumi): Update to 2.40.1.
[propagated-inputs]: Add r-genomicfeatures.
2021-11-07 22:34:45 +00:00
Ricardo Wurmus
74ea385c8a
gnu: r-minfi: Update to 1.40.0.
* gnu/packages/bioconductor.scm (r-minfi): Update to 1.40.0.
2021-11-07 22:34:45 +00:00
Ricardo Wurmus
56f8449df1
gnu: r-bumphunter: Update to 1.36.0.
* gnu/packages/bioconductor.scm (r-bumphunter): Update to 1.36.0.
2021-11-07 22:34:45 +00:00
Ricardo Wurmus
328050f083
gnu: r-siggenes: Update to 1.68.0.
* gnu/packages/bioconductor.scm (r-siggenes): Update to 1.68.0.
2021-11-07 22:34:45 +00:00
Ricardo Wurmus
dc7a2b3b96
gnu: r-illuminaio: Update to 0.36.0.
* gnu/packages/bioconductor.scm (r-illuminaio): Update to 0.36.0.
2021-11-07 22:34:45 +00:00
Ricardo Wurmus
c14e90b2e0
gnu: r-geoquery: Update to 2.62.0.
* gnu/packages/bioconductor.scm (r-geoquery): Update to 2.62.0.
[propagated-inputs]: Add r-data-table.
2021-11-07 22:34:45 +00:00
Ricardo Wurmus
cf5a3022c9
gnu: r-scone: Update to 1.18.0.
* gnu/packages/bioconductor.scm (r-scone): Update to 1.18.0.
2021-11-07 22:34:45 +00:00
Ricardo Wurmus
d06be34abd
gnu: r-scdd: Update to 1.18.0.
* gnu/packages/bioconductor.scm (r-scdd): Update to 1.18.0.
2021-11-07 22:34:45 +00:00
Ricardo Wurmus
b5235660c8
gnu: r-noiseq: Update to 2.38.0.
* gnu/packages/bioconductor.scm (r-noiseq): Update to 2.38.0.
2021-11-07 22:34:45 +00:00
Ricardo Wurmus
2b78b19ed8
gnu: r-monocle: Update to 2.22.0.
* gnu/packages/bioconductor.scm (r-monocle): Update to 2.22.0.
2021-11-07 22:34:45 +00:00
Ricardo Wurmus
aa5a9e5d63
gnu: r-mast: Update to 1.20.0.
* gnu/packages/bioconductor.scm (r-mast): Update to 1.20.0.
2021-11-07 22:34:45 +00:00
Ricardo Wurmus
78018d3c5c
gnu: r-batchelor: Update to 1.10.0.
* gnu/packages/bioconductor.scm (r-batchelor): Update to 1.10.0.
2021-11-07 22:34:44 +00:00
Ricardo Wurmus
2953aac54a
gnu: r-residualmatrix: Update to 1.4.0.
* gnu/packages/bioconductor.scm (r-residualmatrix): Update to 1.4.0.
2021-11-07 22:34:44 +00:00
Ricardo Wurmus
25dc8fb984
gnu: r-icobra: Update to 1.22.0.
* gnu/packages/bioconductor.scm (r-icobra): Update to 1.22.0.
2021-11-07 22:34:44 +00:00
Ricardo Wurmus
3835d77db3
gnu: r-ihw: Update to 1.22.0.
* gnu/packages/bioconductor.scm (r-ihw): Update to 1.22.0.
2021-11-07 22:34:44 +00:00
Ricardo Wurmus
b5e67f5747
gnu: r-lpsymphony: Update to 1.22.0.
* gnu/packages/bioconductor.scm (r-lpsymphony): Update to 1.22.0.
2021-11-07 22:34:44 +00:00
Ricardo Wurmus
2b0a656fd7
gnu: r-karyoploter: Update to 1.20.0.
* gnu/packages/bioconductor.scm (r-karyoploter): Update to 1.20.0.
2021-11-07 22:34:44 +00:00
Ricardo Wurmus
d9b6a42297
gnu: r-ebseq: Update to 1.34.0.
* gnu/packages/bioconductor.scm (r-ebseq): Update to 1.34.0.
2021-11-07 22:34:44 +00:00
Ricardo Wurmus
e639d03112
gnu: r-dnacopy: Update to 1.68.0.
* gnu/packages/bioconductor.scm (r-dnacopy): Update to 1.68.0.
2021-11-07 22:34:44 +00:00
Ricardo Wurmus
efb1b28f32
gnu: r-copynumber: Update to 1.34.0.
* gnu/packages/bioconductor.scm (r-copynumber): Update to 1.34.0.
2021-11-07 22:34:44 +00:00
Ricardo Wurmus
7c4992115c
gnu: r-chipexoqual: Update to 1.18.0.
* gnu/packages/bioconductor.scm (r-chipexoqual): Update to 1.18.0.
2021-11-07 22:34:44 +00:00
Ricardo Wurmus
5c53d21450
gnu: r-savr: Update to 1.32.0.
* gnu/packages/bioconductor.scm (r-savr): Update to 1.32.0.
2021-11-07 22:34:44 +00:00
Ricardo Wurmus
8c6a0221fb
gnu: r-biocsingular: Update to 1.10.0.
* gnu/packages/bioconductor.scm (r-biocsingular): Update to 1.10.0.
2021-11-07 22:34:44 +00:00
Ricardo Wurmus
fae42c164b
gnu: r-metapod: Update to 1.2.0.
* gnu/packages/bioconductor.scm (r-metapod): Update to 1.2.0.
2021-11-07 22:34:44 +00:00
Ricardo Wurmus
9a79db434a
gnu: r-ggtree: Update to 3.2.0.
* gnu/packages/bioconductor.scm (r-ggtree): Update to 3.2.0.
2021-11-07 22:34:44 +00:00
Ricardo Wurmus
eb7a7bacbc
gnu: r-treeio: Update to 1.18.0.
* gnu/packages/bioconductor.scm (r-treeio): Update to 1.18.0.
2021-11-07 22:34:44 +00:00
Ricardo Wurmus
496260ddf1
gnu: r-scaledmatrix: Update to 1.2.0.
* gnu/packages/bioconductor.scm (r-scaledmatrix): Update to 1.2.0.
2021-11-07 22:34:43 +00:00
Ricardo Wurmus
651d54ef51
gnu: r-biocneighbors: Update to 1.12.0.
* gnu/packages/bioconductor.scm (r-biocneighbors): Update to 1.12.0.
2021-11-07 22:34:43 +00:00
Ricardo Wurmus
7ec0b978de
gnu: r-ruvseq: Update to 1.28.0.
* gnu/packages/bioconductor.scm (r-ruvseq): Update to 1.28.0.
2021-11-07 22:34:43 +00:00
Ricardo Wurmus
6f2ef7761a
gnu: r-dnabarcodes: Update to 1.24.0.
* gnu/packages/bioconductor.scm (r-dnabarcodes): Update to 1.24.0.
2021-11-07 22:34:43 +00:00
Ricardo Wurmus
fff0fe2ec9
gnu: r-inspect: Update to 1.24.0.
* gnu/packages/bioconductor.scm (r-inspect): Update to 1.24.0.
2021-11-07 22:34:43 +00:00
Ricardo Wurmus
92f690c1b0
gnu: r-plgem: Update to 1.66.0.
* gnu/packages/bioconductor.scm (r-plgem): Update to 1.66.0.
2021-11-07 22:34:43 +00:00
Ricardo Wurmus
e5cd10e99d
gnu: r-rots: Update to 1.22.0.
* gnu/packages/bioconductor.scm (r-rots): Update to 1.22.0.
2021-11-07 22:34:43 +00:00
Ricardo Wurmus
9050a5c7f6
gnu: r-glimma: Update to 2.4.0.
* gnu/packages/bioconductor.scm (r-glimma): Update to 2.4.0.
2021-11-07 22:34:43 +00:00
Ricardo Wurmus
6ad43d2d78
gnu: r-goseq: Update to 1.46.0.
* gnu/packages/bioconductor.scm (r-goseq): Update to 1.46.0.
2021-11-07 22:34:43 +00:00
Ricardo Wurmus
e9feedb902
gnu: r-ctc: Update to 1.68.0.
* gnu/packages/bioconductor.scm (r-ctc): Update to 1.68.0.
2021-11-07 22:34:43 +00:00
Ricardo Wurmus
6371513fd0
gnu: r-genomicinteractions: Update to 1.28.0.
* gnu/packages/bioconductor.scm (r-genomicinteractions): Update to 1.28.0.
2021-11-07 22:34:43 +00:00
Ricardo Wurmus
3dac6963f9
gnu: r-interactionset: Update to 1.22.0.
* gnu/packages/bioconductor.scm (r-interactionset): Update to 1.22.0.
2021-11-07 22:34:43 +00:00
Ricardo Wurmus
56da30065a
gnu: r-riboseqr: Update to 1.28.0.
* gnu/packages/bioconductor.scm (r-riboseqr): Update to 1.28.0.
2021-11-07 22:34:43 +00:00
Ricardo Wurmus
765052f5dc
gnu: r-riboprofiling: Update to 1.24.0.
* gnu/packages/bioconductor.scm (r-riboprofiling): Update to 1.24.0.
2021-11-07 22:34:43 +00:00
Ricardo Wurmus
4f094515b0
gnu: r-chipcomp: Update to 1.24.0.
* gnu/packages/bioconductor.scm (r-chipcomp): Update to 1.24.0.
2021-11-07 22:34:43 +00:00
Ricardo Wurmus
f1cc328101
gnu: r-bayseq: Update to 2.28.0.
* gnu/packages/bioconductor.scm (r-bayseq): Update to 2.28.0.
2021-11-07 22:34:42 +00:00
Ricardo Wurmus
29bfd56aa0
gnu: r-qdnaseq: Update to 1.30.0.
* gnu/packages/bioconductor.scm (r-qdnaseq): Update to 1.30.0.
[propagated-inputs]: Remove r-future.
2021-11-07 22:34:42 +00:00
Ricardo Wurmus
19fb6bae8c
gnu: r-cghcall: Update to 2.56.0.
* gnu/packages/bioconductor.scm (r-cghcall): Update to 2.56.0.
2021-11-07 22:34:42 +00:00
Ricardo Wurmus
c5cb1e0118
gnu: r-cghbase: Update to 1.54.0.
* gnu/packages/bioconductor.scm (r-cghbase): Update to 1.54.0.
2021-11-07 22:34:42 +00:00
Ricardo Wurmus
c6cff9686b
gnu: r-marray: Update to 1.72.0.
* gnu/packages/bioconductor.scm (r-marray): Update to 1.72.0.
2021-11-07 22:34:42 +00:00
Ricardo Wurmus
7bda0a9220
gnu: r-matrixgenerics: Update to 1.6.0.
* gnu/packages/bioconductor.scm (r-matrixgenerics): Update to 1.6.0.
2021-11-07 22:34:42 +00:00
Ricardo Wurmus
0d11010cef
gnu: r-chippeakanno: Update to 3.28.0.
* gnu/packages/bioconductor.scm (r-chippeakanno): Update to 3.28.0.
2021-11-07 22:34:42 +00:00
Ricardo Wurmus
aad12099dd
gnu: r-graph: Update to 1.72.0.
* gnu/packages/bioconductor.scm (r-graph): Update to 1.72.0.
2021-11-07 22:34:42 +00:00
Ricardo Wurmus
d6a3debb6d
gnu: r-multtest: Update to 2.50.0.
* gnu/packages/bioconductor.scm (r-multtest): Update to 2.50.0.
2021-11-07 22:34:42 +00:00
Ricardo Wurmus
8826132332
gnu: r-mbkmeans: Update to 1.10.0.
* gnu/packages/bioconductor.scm (r-mbkmeans): Update to 1.10.0.
2021-11-07 22:34:42 +00:00
Ricardo Wurmus
6f6478b175
gnu: r-diffbind: Update to 3.4.0.
* gnu/packages/bioconductor.scm (r-diffbind): Update to 3.4.0.
2021-11-07 22:34:42 +00:00
Ricardo Wurmus
d05485f7f7
gnu: r-greylistchip: Update to 1.26.0.
* gnu/packages/bioconductor.scm (r-greylistchip): Update to 1.26.0.
2021-11-07 22:34:42 +00:00
Ricardo Wurmus
88c203a85f
gnu: r-apeglm: Update to 1.16.0.
* gnu/packages/bioconductor.scm (r-apeglm): Update to 1.16.0.
2021-11-07 22:34:42 +00:00
Ricardo Wurmus
c6c1f9fc72
gnu: r-qvalue: Update to 2.26.0.
* gnu/packages/bioconductor.scm (r-qvalue): Update to 2.26.0.
2021-11-07 22:34:42 +00:00
Ricardo Wurmus
980a36cbee
gnu: r-oligo: Update to 1.58.0.
* gnu/packages/bioconductor.scm (r-oligo): Update to 1.58.0.
2021-11-07 22:34:42 +00:00
Ricardo Wurmus
0cffd15771
gnu: r-oligoclasses: Update to 1.56.0.
* gnu/packages/bioconductor.scm (r-oligoclasses): Update to 1.56.0.
2021-11-07 22:34:41 +00:00
Ricardo Wurmus
319038ace3
gnu: r-geneplotter: Update to 1.72.0.
* gnu/packages/bioconductor.scm (r-geneplotter): Update to 1.72.0.
2021-11-07 22:34:41 +00:00
Ricardo Wurmus
c3a3c417c0
gnu: r-zlibbioc: Update to 1.40.0.
* gnu/packages/bioconductor.scm (r-zlibbioc): Update to 1.40.0.
2021-11-07 22:34:41 +00:00
Ricardo Wurmus
469cf86fa2
gnu: r-xvector: Update to 0.34.0.
* gnu/packages/bioconductor.scm (r-xvector): Update to 0.34.0.
2021-11-07 22:34:41 +00:00
Ricardo Wurmus
0b341967e3
gnu: r-vsn: Update to 3.62.0.
* gnu/packages/bioconductor.scm (r-vsn): Update to 3.62.0.
2021-11-07 22:34:41 +00:00
Ricardo Wurmus
e174313541
gnu: r-variantannotation: Update to 1.40.0.
* gnu/packages/bioconductor.scm (r-variantannotation): Update to 1.40.0.
2021-11-07 22:34:41 +00:00
Ricardo Wurmus
47c3ec038e
gnu: r-tximport: Update to 1.22.0.
* gnu/packages/bioconductor.scm (r-tximport): Update to 1.22.0.
2021-11-07 22:34:41 +00:00
Ricardo Wurmus
bb69853f89
gnu: r-topgo: Update to 2.46.0.
* gnu/packages/bioconductor.scm (r-topgo): Update to 2.46.0.
2021-11-07 22:34:41 +00:00
Ricardo Wurmus
442a355026
gnu: r-systempiper: Update to 2.0.0.
* gnu/packages/bioconductor.scm (r-systempiper): Update to 2.0.0.
[propagated-inputs]: Remove r-annotate, r-assertthat, r-batchtools, r-deseq2, r-dot,
r-edger, r-genomicfeatures, r-go-db, r-gostats, r-iranges, r-limma,
r-pheatmap, r-rjson, r-rsvg, r-testthat, and r-variantannotation; add
r-biocgenerics and r-htmlwidgets.
2021-11-07 22:34:41 +00:00
Ricardo Wurmus
c3d9b4b097
gnu: r-sva: Update to 3.42.0.
* gnu/packages/bioconductor.scm (r-sva): Update to 3.42.0.
2021-11-07 22:34:41 +00:00
Ricardo Wurmus
679abce085
gnu: r-summarizedexperiment: Update to 1.24.0.
* gnu/packages/bioconductor.scm (r-summarizedexperiment): Update to 1.24.0.
2021-11-07 22:34:41 +00:00
Ricardo Wurmus
2a3f2f002e
gnu: r-structuralvariantannotation: Update to 1.10.0.
* gnu/packages/bioconductor.scm (r-structuralvariantannotation): Update to 1.10.0.
2021-11-07 22:34:41 +00:00
Ricardo Wurmus
41e1bf39aa
gnu: r-slingshot: Update to 2.2.0.
* gnu/packages/bioconductor.scm (r-slingshot): Update to 2.2.0.
2021-11-07 22:34:41 +00:00
Ricardo Wurmus
91c78f9527
gnu: r-trajectoryutils: Update to 1.2.0.
* gnu/packages/bioconductor.scm (r-trajectoryutils): Update to 1.2.0.
2021-11-07 22:34:41 +00:00
Ricardo Wurmus
9398e3e047
gnu: r-simplifyenrichment: Update to 1.4.0.
* gnu/packages/bioconductor.scm (r-simplifyenrichment): Update to 1.4.0.
2021-11-07 22:34:41 +00:00
Ricardo Wurmus
bf90dbefcc
gnu: r-shortread: Update to 1.52.0.
* gnu/packages/bioconductor.scm (r-shortread): Update to 1.52.0.
2021-11-07 22:34:40 +00:00
Ricardo Wurmus
f1dedc13dc
gnu: r-seqpattern: Update to 1.26.0.
* gnu/packages/bioconductor.scm (r-seqpattern): Update to 1.26.0.
2021-11-07 22:34:40 +00:00
Ricardo Wurmus
09d921d442
gnu: r-seqlogo: Update to 1.60.0.
* gnu/packages/bioconductor.scm (r-seqlogo): Update to 1.60.0.
2021-11-07 22:34:40 +00:00
Ricardo Wurmus
d076801410
gnu: r-rtracklayer: Update to 1.54.0.
* gnu/packages/bioconductor.scm (r-rtracklayer): Update to 1.54.0.
2021-11-07 22:34:40 +00:00
Ricardo Wurmus
f0774df7c1
gnu: r-rsamtools: Update to 2.10.0.
* gnu/packages/bioconductor.scm (r-rsamtools): Update to 2.10.0.
2021-11-07 22:34:40 +00:00
Ricardo Wurmus
e38d619476
gnu: r-rhdf5filters: Update to 1.6.0.
* gnu/packages/bioconductor.scm (r-rhdf5filters): Update to 1.6.0.
2021-11-07 22:34:40 +00:00
Ricardo Wurmus
148e520d4a
gnu: r-rhdf5: Update to 2.38.0.
* gnu/packages/bioconductor.scm (r-rhdf5): Update to 2.38.0.
2021-11-07 22:34:40 +00:00
Ricardo Wurmus
559953466e
gnu: r-reportingtools: Update to 2.34.0.
* gnu/packages/bioconductor.scm (r-reportingtools): Update to 2.34.0.
2021-11-07 22:34:40 +00:00
Ricardo Wurmus
cbf8dbc3cb
gnu: r-regioner: Update to 1.26.0.
* gnu/packages/bioconductor.scm (r-regioner): Update to 1.26.0.
2021-11-07 22:34:40 +00:00
Ricardo Wurmus
c4908b9eff
gnu: r-rcas: Update to 1.20.0.
* gnu/packages/bioconductor.scm (r-rcas): Update to 1.20.0.
2021-11-07 22:34:40 +00:00
Ricardo Wurmus
3caf93321d
gnu: r-rbgl: Update to 1.70.0.
* gnu/packages/bioconductor.scm (r-rbgl): Update to 1.70.0.
2021-11-07 22:34:40 +00:00
Ricardo Wurmus
dc4cc2aa32
gnu: r-protgenerics: Update to 1.26.0.
* gnu/packages/bioconductor.scm (r-protgenerics): Update to 1.26.0.
2021-11-07 22:34:40 +00:00
Ricardo Wurmus
78fd768566
gnu: r-pcamethods: Update to 1.86.0.
* gnu/packages/bioconductor.scm (r-pcamethods): Update to 1.86.0.
2021-11-07 22:34:40 +00:00
Ricardo Wurmus
ada8646a38
gnu: r-organismdbi: Update to 1.36.0.
* gnu/packages/bioconductor.scm (r-organismdbi): Update to 1.36.0.
2021-11-07 22:34:40 +00:00
Ricardo Wurmus
3de4beb013
gnu: r-mzr: Update to 2.28.0.
* gnu/packages/bioconductor.scm (r-mzr): Update to 2.28.0.
2021-11-07 22:34:39 +00:00
Ricardo Wurmus
62d157a2e2
gnu: r-mzid: Update to 1.32.0.
* gnu/packages/bioconductor.scm (r-mzid): Update to 1.32.0.
2021-11-07 22:34:39 +00:00
Ricardo Wurmus
a6402a7fee
gnu: r-msnid: Update to 1.28.0.
* gnu/packages/bioconductor.scm (r-msnid): Update to 1.28.0.
2021-11-07 22:34:39 +00:00
Ricardo Wurmus
35e1bdc5b8
gnu: r-msnbase: Update to 2.20.0.
* gnu/packages/bioconductor.scm (r-msnbase): Update to 2.20.0.
2021-11-07 22:34:39 +00:00
Ricardo Wurmus
b96f76aff0
gnu: r-mutationalpatterns: Update to 3.4.0.
* gnu/packages/bioconductor.scm (r-mutationalpatterns): Update to 3.4.0.
[propagated-inputs]: Add r-rcolorbrewer.
2021-11-07 22:34:39 +00:00
Ricardo Wurmus
d4a0101ad9
gnu: r-methylkit: Update to 1.20.0.
* gnu/packages/bioconductor.scm (r-methylkit): Update to 1.20.0.
2021-11-07 22:34:39 +00:00
Ricardo Wurmus
0465cc8251
gnu: r-limma: Update to 3.50.0.
* gnu/packages/bioconductor.scm (r-limma): Update to 3.50.0.
2021-11-07 22:34:39 +00:00
Ricardo Wurmus
a0cc78a554
gnu: r-keggrest: Update to 1.34.0.
* gnu/packages/bioconductor.scm (r-keggrest): Update to 1.34.0.
2021-11-07 22:34:39 +00:00
Ricardo Wurmus
1fa012822d
gnu: r-interactivedisplaybase: Update to 1.32.0.
* gnu/packages/bioconductor.scm (r-interactivedisplaybase): Update to 1.32.0.
2021-11-07 22:34:39 +00:00
Ricardo Wurmus
b6bd74cefb
gnu: r-impute: Update to 1.68.0.
* gnu/packages/bioconductor.scm (r-impute): Update to 1.68.0.
2021-11-07 22:34:39 +00:00
Ricardo Wurmus
eeeb38d569
gnu: r-rhtslib: Update to 1.26.0.
* gnu/packages/bioconductor.scm (r-rhtslib): Update to 1.26.0.
2021-11-07 22:34:39 +00:00
Ricardo Wurmus
bcd10420cc
gnu: r-hpar: Update to 1.36.0.
* gnu/packages/bioconductor.scm (r-hpar): Update to 1.36.0.
2021-11-07 22:34:39 +00:00
Ricardo Wurmus
df5553ee14
gnu: r-gseabase: Update to 1.56.0.
* gnu/packages/bioconductor.scm (r-gseabase): Update to 1.56.0.
2021-11-07 22:34:39 +00:00
Ricardo Wurmus
8148c6ba72
gnu: r-gostats: Update to 2.60.0.
* gnu/packages/bioconductor.scm (r-gostats): Update to 2.60.0.
2021-11-07 22:34:39 +00:00
Ricardo Wurmus
98c8e7f735
gnu: r-genomicranges: Update to 1.46.0.
* gnu/packages/bioconductor.scm (r-genomicranges): Update to 1.46.0.
2021-11-07 22:34:39 +00:00
Ricardo Wurmus
36ea351603
gnu: r-genomicfiles: Update to 1.30.0.
* gnu/packages/bioconductor.scm (r-genomicfiles): Update to 1.30.0.
2021-11-07 22:34:38 +00:00
Ricardo Wurmus
60d5b89717
gnu: r-genomicfeatures: Update to 1.46.1.
* gnu/packages/bioconductor.scm (r-genomicfeatures): Update to 1.46.1.
2021-11-07 22:34:38 +00:00
Ricardo Wurmus
f599ef1cc4
gnu: r-genomicalignments: Update to 1.30.0.
* gnu/packages/bioconductor.scm (r-genomicalignments): Update to 1.30.0.
2021-11-07 22:34:38 +00:00
Ricardo Wurmus
9122892ec9
gnu: r-genomeinfodb: Update to 1.30.0.
* gnu/packages/bioconductor.scm (r-genomeinfodb): Update to 1.30.0.
2021-11-07 22:34:38 +00:00
Ricardo Wurmus
251e6950d8
gnu: r-genomation: Update to 1.26.0.
* gnu/packages/bioconductor.scm (r-genomation): Update to 1.26.0.
2021-11-07 22:34:38 +00:00
Ricardo Wurmus
38d13a6747
gnu: r-geneoverlap: Update to 1.30.0.
* gnu/packages/bioconductor.scm (r-geneoverlap): Update to 1.30.0.
2021-11-07 22:34:38 +00:00
Ricardo Wurmus
7e80f6fb57
gnu: r-genefilter: Update to 1.76.0.
* gnu/packages/bioconductor.scm (r-genefilter): Update to 1.76.0.
2021-11-07 22:34:38 +00:00
Ricardo Wurmus
3a2cab95b1
gnu: r-gage: Update to 2.44.0.
* gnu/packages/bioconductor.scm (r-gage): Update to 2.44.0.
2021-11-07 22:34:38 +00:00
Ricardo Wurmus
309e04ba18
gnu: r-fastseg: Update to 1.40.0.
* gnu/packages/bioconductor.scm (r-fastseg): Update to 1.40.0.
2021-11-07 22:34:38 +00:00
Ricardo Wurmus
7973617595
gnu: r-ensembldb: Update to 2.18.0.
* gnu/packages/bioconductor.scm (r-ensembldb): Update to 2.18.0.
2021-11-07 22:34:38 +00:00
Ricardo Wurmus
46663d5769
gnu: r-edger: Update to 3.36.0.
* gnu/packages/bioconductor.scm (r-edger): Update to 3.36.0.
2021-11-07 22:34:38 +00:00
Ricardo Wurmus
933366ffe7
gnu: r-edaseq: Update to 2.28.0.
* gnu/packages/bioconductor.scm (r-edaseq): Update to 2.28.0.
2021-11-07 22:34:38 +00:00
Ricardo Wurmus
de8089a767
gnu: r-dirichletmultinomial: Update to 1.36.0.
* gnu/packages/bioconductor.scm (r-dirichletmultinomial): Update to 1.36.0.
2021-11-07 22:34:38 +00:00
Ricardo Wurmus
cb87707987
gnu: r-dexseq: Update to 1.40.0.
* gnu/packages/bioconductor.scm (r-dexseq): Update to 1.40.0.
2021-11-07 22:34:38 +00:00
Ricardo Wurmus
87db919dbb
gnu: r-deseq2: Update to 1.34.0.
* gnu/packages/bioconductor.scm (r-deseq2): Update to 1.34.0.
2021-11-07 22:34:38 +00:00
Ricardo Wurmus
f34bcc5c6b
gnu: r-copywriter: Update to 2.26.0.
* gnu/packages/bioconductor.scm (r-copywriter): Update to 2.26.0.
2021-11-07 22:34:37 +00:00
Ricardo Wurmus
e5d90645ea
gnu: r-complexheatmap: Update to 2.10.0.
* gnu/packages/bioconductor.scm (r-complexheatmap): Update to 2.10.0.
[propagated-inputs]: Remove r-cairo.
2021-11-07 22:34:37 +00:00
Ricardo Wurmus
126a4b6c9d
gnu: r-chipseq: Update to 1.44.0.
* gnu/packages/bioconductor.scm (r-chipseq): Update to 1.44.0.
2021-11-07 22:34:37 +00:00
Ricardo Wurmus
cd7c1e2c3e
gnu: r-chipseeker: Update to 1.30.0.
* gnu/packages/bioconductor.scm (r-chipseeker): Update to 1.30.0.
2021-11-07 22:34:37 +00:00
Ricardo Wurmus
395e9ab420
gnu: r-category: Update to 2.60.0.
* gnu/packages/bioconductor.scm (r-category): Update to 2.60.0.
2021-11-07 22:34:37 +00:00
Ricardo Wurmus
a6b83bd30d
gnu: r-bsgenome: Update to 1.62.0.
* gnu/packages/bioconductor.scm (r-bsgenome): Update to 1.62.0.
2021-11-07 22:34:37 +00:00
Ricardo Wurmus
eea602cdbb
gnu: r-biovizbase: Update to 1.42.0.
* gnu/packages/bioconductor.scm (r-biovizbase): Update to 1.42.0.
2021-11-07 22:34:37 +00:00
Ricardo Wurmus
7851f7f2c6
gnu: r-biostrings: Update to 2.62.0.
* gnu/packages/bioconductor.scm (r-biostrings): Update to 2.62.0.
2021-11-07 22:34:37 +00:00
Ricardo Wurmus
d0ceaf62fc
gnu: r-biomart: Update to 2.50.0.
* gnu/packages/bioconductor.scm (r-biomart): Update to 2.50.0.
2021-11-07 22:34:37 +00:00
Ricardo Wurmus
918c08e20d
gnu: r-biobase: Update to 2.54.0.
* gnu/packages/bioconductor.scm (r-biobase): Update to 2.54.0.
2021-11-07 22:34:37 +00:00
Ricardo Wurmus
e606add2e4
gnu: r-bamsignals: Update to 1.26.0.
* gnu/packages/bioconductor.scm (r-bamsignals): Update to 1.26.0.
2021-11-07 22:34:37 +00:00
Ricardo Wurmus
9efb70c077
gnu: r-aroma-light: Update to 3.24.0.
* gnu/packages/bioconductor.scm (r-aroma-light): Update to 3.24.0.
2021-11-07 22:34:37 +00:00
Ricardo Wurmus
7f291d0965
gnu: r-annotationhub: Update to 3.2.0.
* gnu/packages/bioconductor.scm (r-annotationhub): Update to 3.2.0.
2021-11-07 22:34:37 +00:00
Ricardo Wurmus
c46f294350
gnu: r-annotationforge: Update to 1.36.0.
* gnu/packages/bioconductor.scm (r-annotationforge): Update to 1.36.0.
2021-11-07 22:34:37 +00:00
Ricardo Wurmus
0e31c0034a
gnu: r-annotationfilter: Update to 1.18.0.
* gnu/packages/bioconductor.scm (r-annotationfilter): Update to 1.18.0.
2021-11-07 22:34:36 +00:00
Ricardo Wurmus
eccd328684
gnu: r-annotationdbi: Update to 1.56.1.
* gnu/packages/bioconductor.scm (r-annotationdbi): Update to 1.56.1.
2021-11-07 22:34:36 +00:00
Ricardo Wurmus
eee1bc786a
gnu: r-annotate: Update to 1.72.0.
* gnu/packages/bioconductor.scm (r-annotate): Update to 1.72.0.
2021-11-07 22:34:36 +00:00
Ricardo Wurmus
5b63db8f83
gnu: r-affxparser: Update to 1.66.0.
* gnu/packages/bioconductor.scm (r-affxparser): Update to 1.66.0.
2021-11-07 22:34:36 +00:00
Ricardo Wurmus
5de927226c
gnu: r-affyio: Update to 1.64.0.
* gnu/packages/bioconductor.scm (r-affyio): Update to 1.64.0.
2021-11-07 22:34:36 +00:00
Ricardo Wurmus
5ab6e9e100
gnu: r-affycoretools: Update to 1.66.0.
* gnu/packages/bioconductor.scm (r-affycoretools): Update to 1.66.0.
2021-11-07 22:34:36 +00:00
Ricardo Wurmus
21b5db3f1e
gnu: r-affycontam: Update to 1.52.0.
* gnu/packages/bioconductor.scm (r-affycontam): Update to 1.52.0.
2021-11-07 22:34:36 +00:00
Ricardo Wurmus
71f58a16ae
gnu: r-affycompatible: Update to 1.54.0.
* gnu/packages/bioconductor.scm (r-affycompatible): Update to 1.54.0.
2021-11-07 22:34:36 +00:00
Ricardo Wurmus
a610856e88
gnu: r-affycomp: Update to 1.70.0.
* gnu/packages/bioconductor.scm (r-affycomp): Update to 1.70.0.
2021-11-07 22:34:36 +00:00
Ricardo Wurmus
1a4e10d555
gnu: r-affy: Update to 1.72.0.
* gnu/packages/bioconductor.scm (r-affy): Update to 1.72.0.
2021-11-07 22:34:36 +00:00
Ricardo Wurmus
a85e744c3d
gnu: r-iranges: Update to 2.28.0.
* gnu/packages/bioconductor.scm (r-iranges): Update to 2.28.0.
2021-11-07 22:34:36 +00:00
Ricardo Wurmus
1acf3f1821
gnu: r-ideoviz: Update to 1.30.0.
* gnu/packages/bioconductor.scm (r-ideoviz): Update to 1.30.0.
2021-11-07 22:34:36 +00:00
Ricardo Wurmus
b0a2fc9253
gnu: r-bluster: Update to 1.4.0.
* gnu/packages/bioconductor.scm (r-bluster): Update to 1.4.0.
2021-11-07 22:34:36 +00:00
Ricardo Wurmus
35ccf99fff
gnu: r-delayedarray: Update to 0.20.0.
* gnu/packages/bioconductor.scm (r-delayedarray): Update to 0.20.0.
2021-11-07 22:34:35 +00:00
Ricardo Wurmus
7cc053eaca
gnu: r-deepsnv: Update to 1.40.0.
* gnu/packages/bioconductor.scm (r-deepsnv): Update to 1.40.0.
2021-11-07 22:34:35 +00:00
Ricardo Wurmus
628a8f8c78
gnu: r-decipher: Update to 2.22.0.
* gnu/packages/bioconductor.scm (r-decipher): Update to 2.22.0.
2021-11-07 22:34:35 +00:00
Ricardo Wurmus
07b14e81f9
gnu: r-cummerbund: Update to 2.36.0.
* gnu/packages/bioconductor.scm (r-cummerbund): Update to 2.36.0.
2021-11-07 22:34:35 +00:00
Ricardo Wurmus
9d51c1f423
gnu: r-coverageview: Update to 1.32.0.
* gnu/packages/bioconductor.scm (r-coverageview): Update to 1.32.0.
2021-11-07 22:34:35 +00:00
Ricardo Wurmus
3622390699
gnu: r-biocgenerics: Update to 0.40.0.
* gnu/packages/bioconductor.scm (r-biocgenerics): Update to 0.40.0.
2021-11-07 22:34:35 +00:00
Ricardo Wurmus
6ed26516bf
gnu: r-biocversion: Update to 3.14.0.
* gnu/packages/bioconductor.scm (r-biocversion): Update to 3.14.0.
2021-11-07 22:34:35 +00:00
Ricardo Wurmus
fc0fa7a431
gnu: r-aneufinder: Update to 1.22.0.
* gnu/packages/bioconductor.scm (r-aneufinder): Update to 1.22.0.
2021-11-07 22:34:35 +00:00
Ricardo Wurmus
d1c79f5a2c
gnu: r-biocparallel: Update to 1.28.0.
* gnu/packages/bioconductor.scm (r-biocparallel): Update to 1.28.0.
[arguments]: Adjust build phase to patch renamed file.
2021-11-07 22:34:35 +00:00
Ricardo Wurmus
4a92ab58f6
gnu: Add r-msfeatures.
* gnu/packages/bioconductor.scm (r-msfeatures): New variable.
2021-11-07 22:34:34 +00:00
Ricardo Wurmus
fdb9a02a68
gnu: r-s4vectors: Update to 0.30.2.
* gnu/packages/bioconductor.scm (r-s4vectors): Update to 0.30.2.
2021-11-03 21:07:30 +00:00
Ricardo Wurmus
81dad9f62d
gnu: r-multidataset: Update to 1.20.2.
* gnu/packages/bioconductor.scm (r-multidataset): Update to 1.20.2.
2021-11-03 21:07:30 +00:00
Ricardo Wurmus
c00ca981a9
gnu: r-motifstack: Update to 1.36.1.
* gnu/packages/bioconductor.scm (r-motifstack): Update to 1.36.1.
2021-11-03 21:07:30 +00:00
Ricardo Wurmus
a6f270b7af
gnu: r-enrichplot: Update to 1.12.3.
* gnu/packages/bioconductor.scm (r-enrichplot): Update to 1.12.3.
2021-11-03 21:07:30 +00:00
Ricardo Wurmus
11cf6d399c
gnu: r-dose: Update to 3.18.3.
* gnu/packages/bioconductor.scm (r-dose): Update to 3.18.3.
2021-11-03 21:07:29 +00:00
Ricardo Wurmus
b4888a5581
gnu: r-genefilter: Update to 1.74.1.
* gnu/packages/bioconductor.scm (r-genefilter): Update to 1.74.1.
2021-11-03 21:07:29 +00:00
Ricardo Wurmus
218912f6ad
gnu: r-annotationhub: Update to 3.0.2.
* gnu/packages/bioconductor.scm (r-annotationhub): Update to 3.0.2.
2021-11-03 21:07:29 +00:00
Ricardo Wurmus
0bb9c9a723
gnu: r-annotationforge: Update to 1.34.1.
* gnu/packages/bioconductor.scm (r-annotationforge): Update to 1.34.1.
2021-11-03 21:07:29 +00:00
Ricardo Wurmus
3c3d7f0410
gnu: r-biocthis: Set HOME variable.
* gnu/packages/bioconductor.scm (r-biocthis)[arguments]: Add build phase
'set-HOME.
2021-11-03 21:07:29 +00:00
Mădălin Ionel Patrașcu
4f9f2539f3
gnu: Add r-zellkonverter.
* gnu/packages/bioconductor.scm (r-zellkonverter): New variable.

Signed-off-by: Ricardo Wurmus <rekado@elephly.net>
2021-11-03 21:07:29 +00:00
Ricardo Wurmus
095b76c254
gnu: r-interval: Update to 1.1-0.8.
* gnu/packages/bioconductor.scm (r-interval): Update to 1.1-0.8.
2021-11-03 21:07:15 +00:00
Ricardo Wurmus
ac327cc7fc
gnu: Add r-fcscan.
* gnu/packages/bioconductor.scm (r-fcscan): New variable.
2021-10-21 10:59:16 +00:00
Ricardo Wurmus
b28cd884b8
gnu: r-gdsfmt: Adjust bad substitution.
* gnu/packages/bioconductor.scm (r-gdsfmt)[source]: Include beginning-of-line
anchor in substitution regular expression.
2021-09-30 12:39:49 +02:00
Ricardo Wurmus
0398a89fa1
gnu: r-delayedmatrixstats: Update to 1.14.3.
* gnu/packages/bioconductor.scm (r-delayedmatrixstats): Update to 1.14.3.
2021-09-30 12:39:49 +02:00
Ricardo Wurmus
425c53b568
gnu: r-s4vectors: Update to 0.30.1.
* gnu/packages/bioconductor.scm (r-s4vectors): Update to 0.30.1.
2021-09-30 12:39:49 +02:00
Ricardo Wurmus
c935b25a9e
gnu: r-biocpkgtools: Update to 1.10.2.
* gnu/packages/bioconductor.scm (r-biocpkgtools): Update to 1.10.2.
[propagated-inputs]: Remove r-rex.
2021-09-30 12:39:49 +02:00
Ricardo Wurmus
3683f7f0a8
gnu: r-timeseriesexperiment: Update to 1.10.1.
* gnu/packages/bioconductor.scm (r-timeseriesexperiment): Update to 1.10.1.
2021-09-30 12:39:48 +02:00