Commit Graph

29272 Commits

Author SHA1 Message Date
Ricardo Wurmus
cb96d81be4
gnu: r-doby: Update to 4.6-2.
* gnu/packages/cran.scm (r-doby): Update to 4.6-2.
2018-09-05 20:03:07 +02:00
Ricardo Wurmus
589bd1c426
gnu: Add r-flextable.
* gnu/packages/cran.scm (r-flextable): New variable.
2018-09-05 20:03:06 +02:00
Ricardo Wurmus
78f2c08c0b
gnu: r-rmarkdown: Use latest version of Pandoc.
* gnu/packages/statistics.scm (r-rmarkdown)[propagated-inputs]: Replace
"ghc-pandoc-1" with "ghc-pandoc".
2018-09-05 20:03:06 +02:00
Ricardo Wurmus
f9f4578ba0
Revert "gnu: ghc-tasty: Update to 1.1.0.3."
This reverts commit 3ad6b89090.
2018-09-05 20:03:06 +02:00
Ricardo Wurmus
90708323a1
Revert "gnu: ghc-base-compat: Update to 0.10.4."
This reverts commit 0fa2c552fc.

We may not upgrade base-compat at this point because we haven't upgraded the
default GHC yet.
2018-09-05 20:03:06 +02:00
Ricardo Wurmus
0fd7d59dc3
gnu: Add r-moonbook.
* gnu/packages/cran.scm (r-moonbook): New variable.
2018-09-05 20:03:06 +02:00
Ricardo Wurmus
aaed237d1b
gnu: Add r-nortest.
* gnu/packages/cran.scm (r-nortest): New variable.
2018-09-05 20:03:06 +02:00
Ricardo Wurmus
1f560b9cdb
gnu: Add r-sjmisc.
* gnu/packages/cran.scm (r-sjmisc): New variable.
2018-09-05 20:03:06 +02:00
Ricardo Wurmus
cfc0631433
gnu: Add r-sjlabelled.
* gnu/packages/cran.scm (r-sjlabelled): New variable.
2018-09-05 20:03:06 +02:00
Ricardo Wurmus
de059e4bd3
gnu: Add r-prediction.
* gnu/packages/cran.scm (r-prediction): New variable.
2018-09-05 20:03:06 +02:00
Ricardo Wurmus
bfee9ce88f
gnu: Add r-snakecase.
* gnu/packages/cran.scm (r-snakecase): New variable.
2018-09-05 20:03:06 +02:00
Ricardo Wurmus
c183fa2688
gnu: Add r-officer.
* gnu/packages/cran.scm (r-officer): New variable.
2018-09-05 20:03:06 +02:00
Ricardo Wurmus
5dbe7aa920
gnu: r-googlesheets: Update to 0.3.0.
* gnu/packages/statistics.scm (r-googlesheets): Update to 0.3.0.
[propagated-inputs]: Add r-tibble.
2018-09-05 20:03:06 +02:00
Ricardo Wurmus
88cb7aa9e7
gnu: r-plotly: Update to 4.8.0.
* gnu/packages/statistics.scm (r-plotly): Update to 4.8.0.
[propagated-inputs]: Add r-promises and r-rlang.
2018-09-05 20:03:06 +02:00
Ricardo Wurmus
195eec737c
gnu: r-matrixstats: Update to 0.54.0.
* gnu/packages/statistics.scm (r-matrixstats): Update to 0.54.0.
2018-09-05 20:03:06 +02:00
Ricardo Wurmus
e2a2c3378e
gnu: r-r-rsp: Update to 0.43.0.
* gnu/packages/statistics.scm (r-r-rsp): Update to 0.43.0.
2018-09-05 20:03:06 +02:00
Ricardo Wurmus
eefa7c7f3d
gnu: r-r-utils: Update to 2.7.0.
* gnu/packages/statistics.scm (r-r-utils): Update to 2.7.0.
2018-09-05 20:03:06 +02:00
Ricardo Wurmus
e926159eb3
gnu: r-e1071: Update to 1.7-0.
* gnu/packages/statistics.scm (r-e1071): Update to 1.7-0.
2018-09-05 20:03:05 +02:00
Ricardo Wurmus
2aafa73a94
gnu: r-xml: Update to 3.98-1.16.
* gnu/packages/statistics.scm (r-xml): Update to 3.98-1.16.
2018-09-05 20:03:05 +02:00
Ricardo Wurmus
41f6685388
gnu: r-rcpparmadillo: Update to 0.9.100.5.0.
* gnu/packages/statistics.scm (r-rcpparmadillo): Update to 0.9.100.5.0.
2018-09-05 20:03:05 +02:00
Ricardo Wurmus
19cb93be55
gnu: r-git2r: Update to 0.23.0.
* gnu/packages/statistics.scm (r-git2r): Update to 0.23.0.
[native-inputs]: Add pkg-config.
2018-09-05 20:03:05 +02:00
Ricardo Wurmus
2848c52c5e
gnu: r-roxygen2: Update to 6.1.0.
* gnu/packages/statistics.scm (r-roxygen2): Update to 6.1.0.
[propagated-inputs]: Add r-pkgload and r-purrr.
[native-inputs]: Add r-knitr.
2018-09-05 20:03:05 +02:00
Ricardo Wurmus
9b7e8df85b
gnu: r-ade4: Update to 1.7-13.
* gnu/packages/statistics.scm (r-ade4): Update to 1.7-13.
2018-09-05 20:03:05 +02:00
Ricardo Wurmus
7f38b31ecb
gnu: r-xtable: Update to 1.8-3.
* gnu/packages/statistics.scm (r-xtable): Update to 1.8-3.
2018-09-05 20:03:05 +02:00
Ricardo Wurmus
6b02569f1d
gnu: r-dbplyr: Update to 1.2.2.
* gnu/packages/statistics.scm (r-dbplyr): Update to 1.2.2.
2018-09-05 20:03:05 +02:00
Ricardo Wurmus
3299bc1c5e
gnu: r-yaml: Update to 2.2.0.
* gnu/packages/statistics.scm (r-yaml): Update to 2.2.0.
2018-09-05 20:03:05 +02:00
Ricardo Wurmus
2a96a093ec
gnu: r-evaluate: Update to 0.11.
* gnu/packages/statistics.scm (r-evaluate): Update to 0.11.
2018-09-05 20:03:05 +02:00
Ricardo Wurmus
3bf390279d
gnu: r-scales: Update to 1.0.0.
* gnu/packages/statistics.scm (r-scales): Update to 1.0.0.
[propagated-inputs]: Remove r-dichromat and r-plyr.
2018-09-05 20:03:05 +02:00
Ricardo Wurmus
97c81cc174
gnu: r-stringi: Update to 1.2.4.
* gnu/packages/statistics.scm (r-stringi): Update to 1.2.4.
2018-09-05 20:03:05 +02:00
Ricardo Wurmus
e362be8e89
gnu: Add r-pkgload.
* gnu/packages/cran.scm (r-pkgload): New variable.
2018-09-05 20:03:05 +02:00
Ricardo Wurmus
4f8247b54b
gnu: Add r-pkgbuild.
* gnu/packages/cran.scm (r-pkgbuild): New variable.
2018-09-05 20:03:05 +02:00
Ricardo Wurmus
1ec1989f80
gnu: r-httpuv: Update to 1.4.5.
* gnu/packages/web.scm (r-httpuv): Update to 1.4.5.
[native-inputs]: Add pkg-config.
2018-09-05 20:03:05 +02:00
Ricardo Wurmus
f077174178
gnu: r-scran: Update to 1.8.4.
* gnu/packages/bioinformatics.scm (r-scran): Update to 1.8.4.
2018-09-05 20:03:05 +02:00
Ricardo Wurmus
8e44ff0c0d
gnu: r-scater: Update to 1.8.4.
* gnu/packages/bioinformatics.scm (r-scater): Update to 1.8.4.
2018-09-05 20:03:05 +02:00
Ricardo Wurmus
e69c07e61a
gnu: r-hdf5array: Update to 1.8.1.
* gnu/packages/bioinformatics.scm (r-hdf5array): Update to 1.8.1.
2018-09-05 20:03:04 +02:00
Ricardo Wurmus
16527f1cbc
gnu: r-ggbio: Update to 1.28.5.
* gnu/packages/bioinformatics.scm (r-ggbio): Update to 1.28.5.
[propagated-inputs]: Add r-rlang.
2018-09-05 20:03:04 +02:00
Ricardo Wurmus
70daf9362b
gnu: r-biovizbase: Update to 1.28.2.
* gnu/packages/bioinformatics.scm (r-biovizbase): Update to 1.28.2.
[propagated-inputs]: Add r-rlang.
2018-09-05 20:03:04 +02:00
Ricardo Wurmus
ff7c7d62f4
gnu: r-keggrest: Update to 1.20.1.
* gnu/packages/bioinformatics.scm (r-keggrest): Update to 1.20.1.
2018-09-05 20:03:04 +02:00
Ricardo Wurmus
3c55304688
gnu: r-edaseq: Update to 2.14.1.
* gnu/packages/bioinformatics.scm (r-edaseq): Update to 2.14.1.
2018-09-05 20:03:04 +02:00
Ricardo Wurmus
eb251fe524
gnu: r-igraph: Update to 1.2.2.
* gnu/packages/graph.scm (r-igraph): Update to 1.2.2.
2018-09-05 20:03:04 +02:00
Ricardo Wurmus
c273bcdfce
gnu: r-diffusionmap: Update to 1.1-0.1.
* gnu/packages/graph.scm (r-diffusionmap): Update to 1.1-0.1.
2018-09-05 20:03:04 +02:00
Ricardo Wurmus
6f6aef80e3
gnu: r-seurat: Update to 2.3.4.
* gnu/packages/bioinformatics.scm (r-seurat): Update to 2.3.4.
[source]: Remove snippet.
[arguments]: Remove.
[native-inputs]: Remove.
[propagated-inputs]: Remove r-caret, r-diffusionmap, r-fnn, r-gdata, r-ranger,
r-stringr, r-tclust, and rvgam; add r-httr.
2018-09-05 20:03:04 +02:00
Ricardo Wurmus
07bd90ce90
gnu: r-msnbase: Update to 2.6.3.
* gnu/packages/bioinformatics.scm (r-msnbase): Update to 2.6.3.
2018-09-05 20:03:04 +02:00
Ricardo Wurmus
4ee8c37cca
gnu: r-maldiquant: Update to 1.18.
* gnu/packages/bioinformatics.scm (r-maldiquant): Update to 1.18.
2018-09-05 20:03:04 +02:00
Ricardo Wurmus
48b21f8b6b
gnu: r-seqminer: Update to 6.1.
* gnu/packages/bioinformatics.scm (r-seqminer): Update to 6.1.
2018-09-05 20:03:04 +02:00
Ricardo Wurmus
ad2ed8d01f
gnu: r-genomicfeatures: Update to 1.32.2.
* gnu/packages/bioinformatics.scm (r-genomicfeatures): Update to 1.32.2.
2018-09-05 20:03:04 +02:00
Ricardo Wurmus
f2e79823c6
gnu: r-rtracklayer: Update to 1.40.6.
* gnu/packages/bioinformatics.scm (r-rtracklayer): Update to 1.40.6.
2018-09-05 20:03:04 +02:00
Ricardo Wurmus
aea1b6fb8a
gnu: r-delayedarray: Update to 0.6.5.
* gnu/packages/bioinformatics.scm (r-delayedarray): Update to 0.6.5.
2018-09-05 20:03:04 +02:00
Ricardo Wurmus
3e61c2a8b1
gnu: r-rsamtools: Update to 1.32.3.
* gnu/packages/bioinformatics.scm (r-rsamtools): Update to 1.32.3.
2018-09-05 20:03:04 +02:00
Ricardo Wurmus
a02340058c
gnu: r-biocparallel: Update to 1.14.2.
* gnu/packages/bioinformatics.scm (r-biocparallel): Update to 1.14.2.
2018-09-05 20:03:04 +02:00