Efraim Flashner
c942e17c29
gnu: qhull: Link binaries to shared library.
...
This drops the package size by nearly 60%.
* gnu/packages/maths.scm (qhull)[arguments]: Add configure-flag to link
binaries to shared library.
2021-05-25 15:50:57 +03:00
Marius Bakke
9b4f9039e8
gnu: HYPRE: Update source and home page URLs.
...
* gnu/packages/maths.scm (hypre)[source]: Change to new repository home.
[home-page]: Follow redirect.
2021-05-24 22:02:40 +02:00
Marius Bakke
dbcf2b61b1
gnu: Fix erroneous uses of 'package/inherit'.
...
These packages use a different source/version from the inherited package, and
thus should not inherit replacements.
* gnu/packages/check.scm (googletest-1.8, python-pytest-runner-2): Use record
inheritance instead of PACKAGE/INHERIT.
* gnu/packages/crates-io.scm (rust-bindgen-0.49, rust-bytes-0.4,
rust-colored-1.9.1, rust-difference-1, rust-docopt-0.8, rust-html5ever-0.23,
rust-http-0.1, rust-http-body-0.1, rust-loom-0.2, rust-loom-0.1,
rust-pulldown-cmark-0.0.8, rust-ring-0.13, rust-rustls-0.12, rust-sct-0.3,
rust-term-0.2, rust-untrusted-0.6, rust-webpki-0.18, rust-webpki-roots-0.17,
rust-webpki-roots-0.14): Likewise.
* gnu/packages/emacs.scm (emacs-next, emacs-next-pgtk, guile-emacs): Likewise.
* gnu/packages/guile.scm (guile-2.2.4): Likewise.
* gnu/packages/maths.scm (hdf5-1.10, hdf5-1.12): Likewise.
* gnu/packages/protobuf.scm (protobuf-3.6, protobuf-3.5, python-protobuf-3.6):
Likewise.
* gnu/packages/python-web.scm (python2-html2text): Likewise.
* gnu/packages/python-xyz.scm (python-pygments/fixed, python2-numpy,
python2-urwid, python2-markdown, python2-fonttools): Likewise.
* gnu/packages/racket.scm (racket): Likewise.
* gnu/packages/sequoia.scm (sequoia4pEp): Likewise.
2021-05-23 17:49:56 +02:00
Paul A. Patience
d2e531fa43
gnu: Add numdiff.
...
* gnu/packages/maths.scm (numdiff): New variable.
2021-05-21 12:34:33 +02:00
Marius Bakke
b52f635e41
gnu: hdf5: Fix invalid regex range.
...
* gnu/packages/maths.scm (hdf5-1.8)[arguments]: Use [a-zA-Z] instead of [a-Z]
as range in regular expression.
2021-05-18 22:23:48 +02:00
Marius Bakke
c6f1e13aab
gnu: qhull: Update to 2020.2.
...
* gnu/packages/maths.scm (qhull): Update to 2020.2.
2021-05-18 22:23:48 +02:00
Marius Bakke
d6915cb8ae
gnu: arpack-ng@3.3: Don't use unstable source tarball.
...
* gnu/packages/maths.scm (arpack-ng-3.3.0)[name, home-page]: Remove.
[source]: Switch to GIT-FETCH. Inline uses of NAME and HOME-PAGE.
2021-05-15 19:18:46 +02:00
Marius Bakke
6b496f7b32
gnu: arpack-ng: Update to 3.8.0.
...
* gnu/packages/maths.scm (arpack-ng): Update to 3.8.0.
[native-inputs]: Add PKG-CONFIG.
[inputs]: Add EIGEN.
2021-05-15 19:18:46 +02:00
Tobias Geerinckx-Rice
72e2e8fa29
gnu: Add cglm.
...
* gnu/packages/maths.scm (cglm): New public variable.
2021-05-06 16:46:40 +02:00
Vinicius Monego
adc96e1db3
gnu: Add libcerf.
...
* gnu/packages/maths.scm (libcerf): New variable.
Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2021-05-05 16:56:44 +02:00
Konrad Hinsen
36252dff9b
gnu: octave, octave-cli: Explain difference.
...
* gnu/packages/maths.scm (octave-cli, octave): Extended synopsis.
Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2021-05-03 18:26:49 +02:00
Kei Kebreau
685e4733ad
gnu: xaos: Update to 4.2.1.
...
* gnu/packages/maths.scm (xaos): Update to 4.2.1.
[arguments]: Patch call to "lrelease" in XaoS.pro.
2021-04-29 00:44:03 -04:00
Kei Kebreau
235f2c98b9
gnu: wxmaxima: Update to 21.04.0.
...
* gnu/packages/maths.scm (wxmaxima): Update to 21.04.0.
2021-04-21 17:09:37 -04:00
Ludovic Courtès
f67663d669
gnu: blis: Add deprecated aliases.
...
Add deprecated aliases for packages removed in the parent commit.
* gnu/packages/maths.scm (blis-sandybridge, blis-haswell, blis-knl): New
variables.
2021-04-12 12:38:01 +02:00
Philip McGrath
969adb235e
gnu: blis: Update to 0.8.1.
...
* gnu/packages/maths.scm (make-blis): Remove internal function.
Inline into ...
(bliss): ... this variable. Update to 0.8.1.
[native-inputs]: Add "python" and "perl".
[arguments]: Adjust 'configure' phase to take advantage of new support
for "configuration families" with runtime hardware detection. Select
configuration automatically based on target systems, and allow
"--blis-config=" in #:configure-flags to override the default.
When building for x86_64, include all supported microarchetecture
specializations. Add "--enable-verbose-make" configure flag for better
build logs. Stop ignoring other flags from #:configure-flags.
Remove explicit #:substitutable? argument: the package is now always
substitutable. Add (srfi srfi-1) to #:modules.
(blis/x86_64): Remove internal macro.
(blis-sandybridge): Remove package: included in 'blis'.
(blis-haswell): Remove package: included in 'blis'.
(blis-knl): Remove package: included in 'blis'.
Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2021-04-12 12:38:01 +02:00
Brendan Tildesley
c990604cb0
gnu: python-sip: Update to 5.5.0. Add python-sip-4
...
* gnu/packages/qt.scm (python-sip): Update to 5.5.0.
(python-sip-4): New variable. Rename the old python-sip to python-sip-4.
(python2-sip): Inherit from python-sip-4.
* gnu/packages/maths.scm (veusz)[native-inputs]: Use python-sip-4.
* gnu/packages/pdf.scm (python-poppler-qt5): Use python-sip-4.
* gnu/packages/geo.scm (qgis)[arguments]: Fix build for python-sip@5.
2021-04-09 16:09:23 -04:00
Franck Pérignon
5fd046cbfd
gnu: Add scotch and pt-scotch with shared libraries
...
* gnu/packages/maths.scm (scotch-shared, pt-scotch-shared): New variables.
Signed-off-by: Leo Famulari <leo@famulari.name>
2021-04-06 13:54:09 -04:00
Felix Gruber
bab809cef0
gnu: suitesparse: Update to 5.9.0.
...
* gnu/packages/maths.scm (suitesparse): Update to 5.9.0.
[arguments]: Use cc-for-target instead of hard-coding gcc.
Signed-off-by: Efraim Flashner <efraim@flashner.co.il>
2021-04-05 15:54:21 +03:00
Ludovic Courtès
de2e36411f
gnu: metis: Add 'release-monitoring-url' property.
...
* gnu/packages/maths.scm (metis)[properties]: New field.
2021-03-29 23:33:40 +02:00
Kei Kebreau
b7c19f2850
gnu: wxmaxima: Update to 21.02.0.
...
* gnu/packages/maths.scm (wxmaxima): Update to 21.02.0.
2021-03-13 00:19:00 -05:00
Efraim Flashner
0f8a646e03
gnu: octave: Update to 6.2.0.
...
* gnu/packages/maths.scm (octave): Update to 6.2.0.
[source]: Download tar.xz tarball.
[native-inputs]: Remove lzip.
2021-03-02 10:46:56 +02:00
Nicolas Goaziou
1ca4b76b52
gnu: slepc: Use HTTPS home page URI.
...
* gnu/packages/maths.scm (slepc)[home-page]: Use HTTPS URI.
2021-02-28 12:01:20 +01:00
Nicolas Goaziou
bebfe06776
gnu: elpa: Use HTTPS home page URI.
...
* gnu/packages/maths.scm (elpa)[home-page]: Use HTTPS URI.
2021-02-28 11:02:20 +01:00
Gerd Heber
f601cdc698
gnu: Add HDF5 1.12.0.
...
* gnu/packages/maths.scm (hdf5-1.12): New variable.
Signed-off-by: Leo Famulari <leo@famulari.name>
2021-02-21 16:03:40 -05:00
Kei Kebreau
311e8d72f1
gnu: wxmaxima: Update to 21.01.0.
...
* gnu/packages/maths.scm (wxmaxima): Update to 21.01.0.
[inputs]: Remove libomp.
2021-02-09 16:28:58 -05:00
Eric Bavier
8effdd1969
gnu: hdf5: Update to 1.8.22.
...
Fixes CVE-2018-14033, CVE-2018-11206, CVE-2018-13870, CVE-2018-13869, and
CVE-2018-17435
* gnu/packages/maths.scm (hdf5-1.8): Update to 1.8.22.
* gnu/packages/patches/hdf5-1.8-mpi-deprecations.patch: Delete upstreamed
patch.
* gnu/local/mk (dist_patch_DATA): Remove it.
2021-02-08 13:25:34 -06:00
Kei Kebreau
f5f642058a
gnu: wxmaxima: Update to 20.12.2.
...
* gnu/packages/maths.scm (wxmaxima): Update to 20.12.2.
[arguments]: Remove #:test-target and disable tests. Remove 'pre-check
phase.
[native-inputs]: Remove xorg-server-for-tests.
[inputs]: Add libomp.
2021-01-17 18:07:29 -05:00
Kei Kebreau
9aa0a98ea0
gnu: gnuplot: Update to 5.4.1.
...
* gnu/packages/maths.scm (gnuplot): Update to 5.4.1.
[arguments]: Set GNUTERM in #:make-flags.
2021-01-17 18:07:29 -05:00
Efraim Flashner
a2da6074d0
gnu: suitesparse: Install libraries into /lib.
...
* gnu/packages/maths.scm (suitesparse)[arguments]: Add to
configure-flags to install programs built with cmake to use 'lib', not
'lib64.'
2021-01-04 16:15:15 +02:00
Vincent Legoll
75166b29f2
gnu: matio: Update to 1.5.19.
...
* gnu/packages/maths.scm (matio): Update to 1.5.19.
Signed-off-by: Efraim Flashner <efraim@flashner.co.il>
2020-12-31 14:50:34 +02:00
Greg Hogan
20cf7f75ff
gnu: octave, octave-cli: Update to 6.1.0.
...
* gnu/packages/maths.scm (octave, octave-cli): Update to 6.1.0.
Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2020-12-22 16:32:29 +01:00
Efraim Flashner
9a6cf550bd
gnu: glpk: Don't build static library.
...
* gnu/packages/maths.scm (glpk)[arguments]: Add configure-flag to skip
static library.
2020-12-17 22:26:30 +02:00
Efraim Flashner
885fe927e7
gnu: glpk: Update to 5.0.
...
* gnu/packages/maths.scm (glpk): Update to 5.0.
(glpk-4.65): New variable.
* gnu/packages/algebra.scm (giac)[inputs]: Replace glpk with glpk-4.
2020-12-17 22:26:30 +02:00
Vinicius Monego
0313617f65
gnu: veusz: Update to 3.3.1.
...
* gnu/packages/maths.scm (veusz): Update to 3.3.1.
Signed-off-by: Nicolas Goaziou <mail@nicolasgoaziou.fr>
2020-12-13 00:26:53 +01:00
Vinicius Monego
5f40ad9ae2
gnu: sleef: Update to 3.5.1.
...
* gnu/packages/maths.scm (sleef): Update to 3.5.1.
Signed-off-by: Nicolas Goaziou <mail@nicolasgoaziou.fr>
2020-12-12 21:43:39 +01:00
Eric Bavier
2a23e3f582
gnu: dealii: Update to 9.2.0.
...
* gnu/packages/maths.scm (dealii): Update to 9.2.0.
2020-12-09 13:42:05 -06:00
Ryan Prior
b5c51ae086
gnu: Add tiny-bignum.
...
* gnu/packages/maths.scm (tiny-bignum): New variable.
Signed-off-by: Christopher Baines <mail@cbaines.net>
2020-12-08 09:21:50 +00:00
Eric Bavier
705af5403b
gnu: superlu-dist: Update to 6.4.0.
...
* gnu/packages/maths.scm (superlu-dist): Update to 6.4.0
[source]: Use git-fetch, as tarballs are no longer published.
* gnu/packages/patches/superlu-dist-awpm-grid.patch: Remove all but the first
hunk; they are unnecessary.
2020-12-05 11:14:56 -06:00
Eric Bavier
013cf93234
gnu: scotch: Update to 6.1.0
...
* gnu/packages/maths.scm (scotch): Update to 6.1.0.
2020-12-05 11:14:55 -06:00
Tobias Geerinckx-Rice
2368225019
gnu: metamath: Update to 0.193.
...
* gnu/packages/maths.scm (metamath): Update to 0.193.
2020-12-01 20:55:42 +01:00
Tobias Geerinckx-Rice
1b16727c18
gnu: units: Update to 2.21.
...
* gnu/packages/maths.scm (units): Update to 2.21.
2020-11-17 22:21:22 +01:00
Martin Becze
dc2de508a3
gnu: z3: Update to 4.8.9.
...
* gnu/packages/maths.scm (z3): Update to 4.8.9.
Signed-off-by: Christopher Baines <mail@cbaines.net>
2020-11-16 21:19:45 +00:00
Tobias Geerinckx-Rice
7ea957e2c5
gnu: superlu: Update to 5.2.2.
...
* gnu/packages/maths.scm (superlu): Update to 5.2.2.
2020-11-15 00:38:32 +01:00
Paul Garlick
c6843f1751
gnu: python-petsc4py: Fix build with python 3.8.
...
* gnu/packages/maths.scm (python-petsc4py)[source]: Add snippet.
[native-inputs]: New field.
2020-11-11 09:28:06 +00:00
Christopher Baines
d50ad6a7c6
gnu: netcdf-fortran: Update to 4.5.3.
...
This allows the package to build with netcdf 4.7.4.
* gnu/packages/maths.scm (netcdf-fortran): Update to 4.5.3.
2020-10-26 15:58:08 +00:00
Christopher Baines
a9291a28b2
gnu: netcdf: Update to 4.7.4.
...
This will fix an issue building qgis.
* gnu/packages/maths.scm (netcdf): Update to 4.7.4.
[source]: Remove the netcdf-tst_h_par.patch, also change the naming of the
source tarball, as the name seems to have changed for recent releases.
[inputs]: Update hdf5 and add curl.
* gnu/packages/patches/netcdf-tst_h_par.patch: Delete.
* gnu/local.mk (dist_patch_DATA): Remove deleted patch.
2020-10-26 15:57:27 +00:00
Ludovic Courtès
c5372cd488
gnu: hdf5: Default to 1.10.
...
This is a followup to 5930963555
2020-10-23 16:35:39 +02:00
zimoun
229e04c66e
gnu: gmsh: Update to 4.6.0.
...
Gmsh bundles METIS 5 released with Apache License 2.0 since upstream commit
eaff7f6477fe876991615cfa4b5832bd5f12994b. Instead, Gmsh is linked with the
package 'metis'.
* gnu/packages/maths.scm (gmsh): Update to 4.6.0.
(propagated-inputs): Replace 'opencascade-oce' by 'opencascade-occt', add
'metis'.
Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2020-10-08 12:26:56 +02:00
Greg Hogan
786a04c9ae
gnu: SuiteSparse: Update to 5.8.1.
...
From 0d8692dfebc6ac4b515c06612ab8da4c898719eb Mon Sep 17 00:00:00 2001
From: Greg Hogan <code@greghogan.com>
Date: Tue, 29 Sep 2020 11:54:38 +0000
Subject: [PATCH] gnu: SuiteSparse: Update to 5.8.1.
* gnu/packages/maths.scm (suitesparse): Update to 5.8.1.
[arguments]: Remove unnecessary flag and use default blas and lapack.
[inputs]: Add new dependencies for SLIP_LU component.
Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2020-10-01 12:45:38 +02:00
Efraim Flashner
1628d57bb5
gnu: Fix package references.
...
* gnu/packages/algebra.scm (iml)[inputs]: Correctly refer to package
inputs.
* gnu/packages/astronomy.scm (xplanet),
* gnu/packages/audio.scm (redkite, libaudec, lv2lint, lv2toweb),
* gnu/packages/bioconductor.scm (r-cummerbund),
* gnu/packages/chicken.scm (chicken),
* gnu/packages/conky.scm (conky),
* gnu/packages/cran.scm (r-latex2exp),
* gnu/packages/crates-io.scm (rust-rgb),
* gnu/packages/databases.scm (mariadb),
* gnu/packages/diffoscope.scm (reprotest),
* gnu/packages/file-systems.scm (glusterfs),
* gnu/packages/finance.scm (electron-cash),
* gnu/packages/games.scm (rinutils, ksudoku, kdiamond, kigo),
* gnu/packages/geo.scm (grass),
* gnu/packages/gnome.scm (libmediaart, gnome-contacts, geoclue),
* gnu/packages/gnucash.scm (aqbanking),
* gnu/packages/image.scm (mtpaint),
* gnu/packages/kde-internet.scm (kopete, ktorrent),
* gnu/packages/kde-utils.scm (kmousetool, kmouth, kronometer),
* gnu/packages/linphone.scm (liblinphone),
* gnu/packages/maths.scm (ppl),
* gnu/packages/mercury.scm (mercury-minimal),
* gnu/packages/music.scm (bjumblr, bschaffl, lsp-plugins,
spectacle-analyzer, helm, tap-lv2, wolf-shaper, shiru-lv2),
* gnu/packages/networking.scm (restinio),
* gnu/packages/prolog.scm (swi-prolog),
* gnu/packages/python-web.scm (gunicorn),
* gnu/packages/python-xyz.scm (python-docusign-esign),
* gnu/packages/ruby.scm (ruby-cucumber, ruby_version, ruby-addressable),
* gnu/packages/sagemath.scm (python-cypari2),
* gnu/packages/skarnet.scm (s6-linux-init),
* gnu/packages/vpn.scm (sshuttle),
* gnu/packages/web.scm (libcyaml),
* gnu/packages/xdisorg.scm (kbdd),
* gnu/packages/xorg.scm (xpra): Same.
2020-09-30 09:28:26 +03:00
