Commit Graph

120521 Commits

Author SHA1 Message Date
Mădălin Ionel Patrașcu
4171f8bf3f
gnu: Add r-mlr3data.
* gnu/packages/cran.scm (r-mlr3data): New variable.

Change-Id: I93bee828d1ac26da1146c853b4d88fbdec42905f
2024-05-08 15:07:04 +02:00
Mădălin Ionel Patrașcu
938f1c065e
gnu: Add r-mlr3cluster.
* gnu/packages/cran.scm (r-mlr3cluster): New variable.

Change-Id: I3d970afeeaf4de1793974177bcf5abf64c957d6b
2024-05-08 15:07:04 +02:00
Ricardo Wurmus
6745d692d4
gnu: rcas-web: Update to latest commit.
The latest commit fixes a problem in configure.ac.

* gnu/packages/bioinformatics.scm (rcas-web)[source]: Fetch from git.
[arguments]: Remove 'find-RCAS phase; use G-expression.
[inputs]: Drop labels.  Use Guile 3.0.
[native-inputs]: Add autoconf and automake.

Change-Id: I6f1d300df589a99b9493b2857f58d49e468b210e
2024-05-08 12:53:43 +02:00
Ricardo Wurmus
ba8d10c65a
FIXUP r-bigmelon
Change-Id: Ic9b038a93c14595da8575de5449b7aa0504d031e
2024-05-08 12:53:43 +02:00
Ricardo Wurmus
babafe251c
gnu: r-icellnet: Update to 2.2.1-1.e10ee4a.
* gnu/packages/bioinformatics.scm (r-icellnet): Update to 2.2.1-1.e10ee4a.
[propagated-inputs]: Add r-complexheatmap and r-circlize.

Change-Id: Ib844f83cb1ca4f88259593153d9e66289307dccc
2024-05-08 12:53:43 +02:00
Ricardo Wurmus
cb5b2d6d24
gnu: emacs-ess: Disable one more test.
* gnu/packages/statistics.scm (emacs-ess)[arguments]: Disable browser test.

Change-Id: Ia63f1e35c3eb4d0cce84cd5388b7376b39facb8e
2024-05-08 12:53:43 +02:00
Ricardo Wurmus
5fe06b3bc5
gnu: r-fpc: Update to 2.2-12.
* gnu/packages/statistics.scm (r-fpc): Update to 2.2-12.

Change-Id: I0da322d7059b27b08de6f07216fc250827554412
2024-05-08 12:53:43 +02:00
Ricardo Wurmus
5a4c6947a3
gnu: r-mclust: Update to 6.1.1.
* gnu/packages/statistics.scm (r-mclust): Update to 6.1.1.

Change-Id: I9fed05d2d124a07b8775306002bc8accde23fa80
2024-05-08 12:53:43 +02:00
Ricardo Wurmus
820ff31ad9
gnu: r-sfsmisc: Update to 1.1-18.
* gnu/packages/statistics.scm (r-sfsmisc): Update to 1.1-18.

Change-Id: Iaaf71756973ebe6613848fc9785f4d867a9d4a66
2024-05-08 12:53:43 +02:00
Ricardo Wurmus
85426f50cf
gnu: r-gtable: Update to 0.3.5.
* gnu/packages/statistics.scm (r-gtable): Update to 0.3.5.

Change-Id: Icc622408ebc0db096d9c82fdeebe9b4620b21b56
2024-05-08 12:53:43 +02:00
Ricardo Wurmus
066f6f698a
gnu: r-ggplot2: Update to 3.5.1.
* gnu/packages/statistics.scm (r-ggplot2): Update to 3.5.1.

Change-Id: I3b18fcdfbf6b57ccd02114a364d5d6227856535c
2024-05-08 12:53:43 +02:00
Ricardo Wurmus
de611a91c5
gnu: r-stringi: Update to 1.8.4.
* gnu/packages/statistics.scm (r-stringi): Update to 1.8.4.

Change-Id: Ifad35d93dcd2efdac025e1b29860609357eec75c
2024-05-08 12:53:43 +02:00
Ricardo Wurmus
8456d51266
gnu: r-survival: Update to 3.6-4.
* gnu/packages/statistics.scm (r-survival): Update to 3.6-4.

Change-Id: Ie76a72abc4c23213e9ab382e78960b26d4816f89
2024-05-08 12:53:43 +02:00
Ricardo Wurmus
2b4fb63498
gnu: r-matrix: Update to 1.7-0.
* gnu/packages/statistics.scm (r-matrix): Update to 1.7-0.

Change-Id: I7a9ae42611a916c8748bc2139ef08b478a533bfe
2024-05-08 12:53:43 +02:00
Ricardo Wurmus
fa1f85c777
gnu: r-mass: Update to 7.3-60.2.
* gnu/packages/statistics.scm (r-mass): Update to 7.3-60.2.

Change-Id: I351639b3c07afebdc5d59866e493214fcb07c36b
2024-05-08 12:53:43 +02:00
Ricardo Wurmus
9b27e26df7
gnu: r-ragg: Update to 1.3.1.
* gnu/packages/cran.scm (r-ragg): Update to 1.3.1.

Change-Id: Iac1219839875056725a38b4bb816447ac216abba
2024-05-08 12:53:43 +02:00
Ricardo Wurmus
742d5b1673
gnu: r-mlr3: Update to 0.19.0.
* gnu/packages/cran.scm (r-mlr3): Update to 0.19.0.

Change-Id: I424e6285e79d0082da45a848d2f1e131ad7975ac
2024-05-08 12:53:43 +02:00
Ricardo Wurmus
7fa235cc9b
gnu: r-mlr3pipelines: Update to 0.5.2.
* gnu/packages/cran.scm (r-mlr3pipelines): Update to 0.5.2.

Change-Id: I0179b7a822f86b7c4c24d7d3f15deab1838e27d3
2024-05-08 12:53:42 +02:00
Ricardo Wurmus
5c5d63c3b8
gnu: r-iml: Update to 0.11.3.
* gnu/packages/cran.scm (r-iml): Update to 0.11.3.

Change-Id: I07cb8a5fb52b04ceab6b4e1a7aaf4133b9af8dd9
2024-05-08 12:53:42 +02:00
Ricardo Wurmus
03e1518d57
gnu: r-stanheaders: Update to 2.32.7.
* gnu/packages/cran.scm (r-stanheaders): Update to 2.32.7.

Change-Id: I367bba897a937c915bd9b5b3e2246209c785e424
2024-05-08 12:53:42 +02:00
Ricardo Wurmus
ea6f3dd9ae
gnu: r-quanteda: Update to 4.0.2.
* gnu/packages/cran.scm (r-quanteda): Update to 4.0.2.

Change-Id: I02fbefc305e1a7673c52359da86eae77964a47bb
2024-05-08 12:53:42 +02:00
Ricardo Wurmus
ae1a664241
gnu: r-flexclust: Update to 1.4-2.
* gnu/packages/cran.scm (r-flexclust): Update to 1.4-2.

Change-Id: I1fe773b23e814ac5ebc5e52c855ba889c6c79f1b
2024-05-08 12:53:42 +02:00
Ricardo Wurmus
58a34e1c9c
gnu: r-imager: Update to 1.0.1.
* gnu/packages/cran.scm (r-imager): Update to 1.0.1.

Change-Id: I75f935e3197d072148067d57947560397d4e7dff
2024-05-08 12:53:42 +02:00
Ricardo Wurmus
fc1f6f1734
gnu: r-lda: Update to 1.5.2.
* gnu/packages/cran.scm (r-lda): Update to 1.5.2.

Change-Id: I2fe10d6cdb94982650c7f94ea7e011a1853ed8e1
2024-05-08 12:53:42 +02:00
Ricardo Wurmus
c65406f254
gnu: r-mlbench: Update to 2.1-5.
* gnu/packages/cran.scm (r-mlbench): Update to 2.1-5.

Change-Id: If044d9180ce60eb105100ead97d0ffa5f9f3a87a
2024-05-08 12:53:42 +02:00
Ricardo Wurmus
dd1fe56edc
gnu: r-apcluster: Update to 1.4.13.
* gnu/packages/cran.scm (r-apcluster): Update to 1.4.13.

Change-Id: Ib99a946abf710052daae5ee5fe4bf91f38ee1c0e
2024-05-08 12:53:42 +02:00
Ricardo Wurmus
82499b5a91
gnu: r-nonnest2: Update to 0.5-7.
* gnu/packages/cran.scm (r-nonnest2): Update to 0.5-7.

Change-Id: I9d30b4374033517c9e25e3ba20fb2427df492381
2024-05-08 12:53:42 +02:00
Ricardo Wurmus
6dc964cc19
gnu: r-pixmap: Update to 0.4-13.
* gnu/packages/cran.scm (r-pixmap): Update to 0.4-13.

Change-Id: Ia2270efb3fb0607cf9095b308673dcee1d04df32
2024-05-08 12:53:42 +02:00
Ricardo Wurmus
52b495538d
gnu: r-gridpattern: Update to 1.2.1.
* gnu/packages/cran.scm (r-gridpattern): Update to 1.2.1.

Change-Id: Ib5f335fb1341df372aa85f1fc658509b4006045a
2024-05-08 12:53:42 +02:00
Ricardo Wurmus
a5206d48fe
gnu: r-biocmanager: Update to 1.30.23.
* gnu/packages/cran.scm (r-biocmanager): Update to 1.30.23.

Change-Id: Ie6bd5daa07a9d9b3f120563735126a70ed0f882a
2024-05-08 12:53:42 +02:00
Ricardo Wurmus
909b50265d
gnu: r-xopen: Update to 1.0.1.
* gnu/packages/cran.scm (r-xopen): Update to 1.0.1.

Change-Id: Ib6a2cf9f4ab8103277d43f45c5c4379bbb61894e
2024-05-08 12:53:42 +02:00
Ricardo Wurmus
7cf39c3ed4
gnu: r-fs: Update to 1.6.4.
* gnu/packages/cran.scm (r-fs): Update to 1.6.4.

Change-Id: I1611b167864d37b1ff9249727f7e272ce10c103d
2024-05-08 12:53:42 +02:00
Ricardo Wurmus
cbc2125aa3
gnu: r-labelled: Update to 2.13.0.
* gnu/packages/cran.scm (r-labelled): Update to 2.13.0.
[propagated-inputs]: Add r-tidyselect.

Change-Id: I0fa1bd6fdd76fbf3900103c00310925662b359f5
2024-05-08 12:53:42 +02:00
Ricardo Wurmus
ff52e6b37a
gnu: r-doby: Update to 4.6.21.
* gnu/packages/cran.scm (r-doby): Update to 4.6.21.
[propagated-inputs]: Remove r-magrittr; add r-boot, r-cowplot, r-modelr, r-rlang, and
r-tidyr.

Change-Id: I11a033414510a6ce09863eb69e27186471e85856
2024-05-08 12:53:42 +02:00
Ricardo Wurmus
5c988ff569
gnu: r-flextable: Update to 0.9.6.
* gnu/packages/cran.scm (r-flextable): Update to 0.9.6.

Change-Id: Ib61b62ddb06d1eaea5b5a0cfa9ebfea381337190
2024-05-08 12:53:42 +02:00
Ricardo Wurmus
9a343e53a9
gnu: r-prediction: Update to 0.3.17.
* gnu/packages/cran.scm (r-prediction): Update to 0.3.17.

Change-Id: Idf811d30e662c4ed25c1d4d9f0ead292b709957b
2024-05-08 12:53:42 +02:00
Ricardo Wurmus
8f7f134a57
gnu: r-officer: Update to 0.6.6.
* gnu/packages/cran.scm (r-officer): Update to 0.6.6.

Change-Id: I2758460e3c1eb7f020530431d191970d4ecc6f22
2024-05-08 12:53:42 +02:00
Ricardo Wurmus
b778d59156
gnu: r-rapiclient: Update to 0.1.4.
* gnu/packages/cran.scm (r-rapiclient): Update to 0.1.4.

Change-Id: I1c637b91a9463b2e8dd0f85fe80c89b41914ee79
2024-05-08 12:53:42 +02:00
Ricardo Wurmus
8849663588
gnu: r-tinytex: Update to 0.51.
* gnu/packages/cran.scm (r-tinytex): Update to 0.51.

Change-Id: Ia99bf297807fff8aaf5e3e7ec7eafe96b541dec2
2024-05-08 12:53:42 +02:00
Ricardo Wurmus
ad7d89daef
gnu: r-debugme: Update to 1.2.0.
* gnu/packages/cran.scm (r-debugme): Update to 1.2.0.

Change-Id: I0a43ead356a49e59506be73ec7e449813e8e1dc6
2024-05-08 12:53:41 +02:00
Ricardo Wurmus
f560edf277
gnu: r-ips: Update to 0.0.12.
* gnu/packages/cran.scm (r-ips): Update to 0.0.12.
[propagated-inputs]: Remove r-seqinr; add r-data-table.

Change-Id: I948da8f5d5e4813096db71560a2aead3003cec06
2024-05-08 12:53:41 +02:00
Ricardo Wurmus
88ac0306d5
gnu: r-evd: Update to 2.3-7.
* gnu/packages/cran.scm (r-evd): Update to 2.3-7.

Change-Id: I6009ea9eb4138fd25542ef8c4bc1e51c60a257ab
2024-05-08 12:53:41 +02:00
Ricardo Wurmus
be22689e75
gnu: r-sp: Update to 2.1-4.
* gnu/packages/cran.scm (r-sp): Update to 2.1-4.

Change-Id: Id4d21cf39ac47dba310f16d26d294ec314925b45
2024-05-08 12:53:41 +02:00
Ricardo Wurmus
1b6f915a88
gnu: r-rcppspdlog: Update to 0.0.17.
* gnu/packages/cran.scm (r-rcppspdlog): Update to 0.0.17.

Change-Id: I2558509ee09e4a732e8a2aaf1addab22375f4d85
2024-05-08 12:53:41 +02:00
Ricardo Wurmus
6f95883d01
FIXUP r-infercnv
Change-Id: I94a80f498afb34052dc4b2c3394fd94a463241bc
2024-05-08 12:53:41 +02:00
Ricardo Wurmus
5ad635ec49
gnu: r-job: Update to 0.3.1.
* gnu/packages/cran.scm (r-job): Update to 0.3.1.

Change-Id: I3c47b59da4d497df1ef4b19d85bf8cc1b618295d
2024-05-08 12:53:41 +02:00
Ricardo Wurmus
40529de4f9
gnu: r-secretbase: Update to 0.5.0.
* gnu/packages/cran.scm (r-secretbase): Update to 0.5.0.

Change-Id: Ia0a2d14a98e43ef68794d7204fc6e60dfcf76fde
2024-05-08 12:53:41 +02:00
Ricardo Wurmus
21c96d6d03
gnu: r-mboost: Update to 2.9-10.
* gnu/packages/cran.scm (r-mboost): Update to 2.9-10.

Change-Id: I68b980e21438220989258c0d98791ab25e9211a6
2024-05-08 12:53:41 +02:00
Ricardo Wurmus
c6d4cc67ec
gnu: r-oompadata: Update to 3.1.4.
* gnu/packages/cran.scm (r-oompadata): Update to 3.1.4.

Change-Id: Id09f253cd6e62032fb6ffb90a776d3dfece8675b
2024-05-08 12:53:41 +02:00
Ricardo Wurmus
80ead87638
gnu: r-ggpp: Update to 0.5.7.
* gnu/packages/cran.scm (r-ggpp): Update to 0.5.7.
[propagated-inputs]: Add r-vctrs.

Change-Id: Ib8e2ddcdd38a943183fa349eabdeef8db625566f
2024-05-08 12:53:41 +02:00
Ricardo Wurmus
e76b664a36
gnu: r-brio: Update to 1.1.5.
* gnu/packages/cran.scm (r-brio): Update to 1.1.5.

Change-Id: I8cad71c2d24161c268698ac4fe72d910b81f034e
2024-05-08 12:53:41 +02:00
Ricardo Wurmus
7ba06e0c7b
gnu: r-classdiscovery: Update to 3.4.5.
* gnu/packages/bioconductor.scm (r-classdiscovery): Update to 3.4.5.

Change-Id: I8f712ffb99ff1fc94edf7095bb66ba10184843da
2024-05-08 12:53:41 +02:00
Ricardo Wurmus
c35e5cecbc
gnu: r-valr: Update to 0.8.1.
* gnu/packages/bioconductor.scm (r-valr): Update to 0.8.1.

Change-Id: I66b405f9baecdf7e11187748241d553614a39269
2024-05-08 12:53:41 +02:00
Ricardo Wurmus
8182017710
gnu: r-scgate: Update to 1.6.2.
* gnu/packages/bioconductor.scm (r-scgate): Update to 1.6.2.

Change-Id: I7c1d1884a07db5b6dcf0475fa524cde98297b62c
2024-05-08 12:53:41 +02:00
Ricardo Wurmus
aebf218eb7
gnu: r-phyloseq: Update to 1.48.0.
* gnu/packages/bioconductor.scm (r-phyloseq): Update to 1.48.0.

Change-Id: I6e9204c00ab56f6d1441ab15a01d9680de368e9e
2024-05-08 12:53:41 +02:00
Ricardo Wurmus
23535051f4
gnu: r-tximeta: Update to 1.22.0.
* gnu/packages/bioconductor.scm (r-tximeta): Update to 1.22.0.
[propagated-inputs]: Add r-txdbmaker.

Change-Id: I1a87fadeb0cef5687abc3be91517c7cdcfaa950d
2024-05-08 12:53:41 +02:00
Ricardo Wurmus
55d89a17f9
gnu: r-tricycle: Update to 1.12.0.
* gnu/packages/bioconductor.scm (r-tricycle): Update to 1.12.0.

Change-Id: I469d3387d52cce2d443e08ca21f3c18334c7b1f1
2024-05-08 12:53:41 +02:00
Ricardo Wurmus
7dd229853b
gnu: r-tcgabiolinks: Update to 2.32.0.
* gnu/packages/bioconductor.scm (r-tcgabiolinks): Update to 2.32.0.

Change-Id: I8ea8c5b220a262e921bcc4448b039153d48ad5c8
2024-05-08 12:53:41 +02:00
Ricardo Wurmus
3ea719d1bf
gnu: r-biscuiteer: Update to 1.18.0.
* gnu/packages/bioconductor.scm (r-biscuiteer): Update to 1.18.0.

Change-Id: If9119ebcde80e8548df5bcd4ffab1b0dca4ca726
2024-05-08 12:53:41 +02:00
Ricardo Wurmus
4689ba62f5
gnu: r-omnipathr: Update to 3.11.10.
* gnu/packages/bioconductor.scm (r-omnipathr): Update to 3.11.10.

Change-Id: I3e93662d106c84cbe611f788f2c16f5caa748fbc
2024-05-08 12:53:41 +02:00
Ricardo Wurmus
a37cf20566
gnu: r-omicade4: Update to 1.44.0.
* gnu/packages/bioconductor.scm (r-omicade4): Update to 1.44.0.

Change-Id: Iace759b9cc18c774f8a595f5ae05aa7256078901
2024-05-08 12:53:40 +02:00
Ricardo Wurmus
74d8555fc0
gnu: r-dmrseq: Update to 1.24.0.
* gnu/packages/bioconductor.scm (r-dmrseq): Update to 1.24.0.

Change-Id: Ia0a2aff28eb12c730933c81a1afe203805c51a25
2024-05-08 12:53:40 +02:00
Ricardo Wurmus
b138e6fc5b
gnu: r-dada2: Update to 1.32.0.
* gnu/packages/bioconductor.scm (r-dada2): Update to 1.32.0.

Change-Id: I6e8764f77d05923b3534aff1388bf021491118fe
2024-05-08 12:53:40 +02:00
Ricardo Wurmus
7cb5aac097
gnu: r-bsseq: Update to 1.40.0.
* gnu/packages/bioconductor.scm (r-bsseq): Update to 1.40.0.

Change-Id: If2cb52db5144dd8c625d428c7a83736d0eb9ce68
2024-05-08 12:53:40 +02:00
Ricardo Wurmus
73a75b1a72
gnu: r-biotmle: Update to 1.28.0.
* gnu/packages/bioconductor.scm (r-biotmle): Update to 1.28.0.

Change-Id: Idd65b115b561e4069470133fdf70da803b7e463e
2024-05-08 12:53:40 +02:00
Ricardo Wurmus
65a3deae8c
gnu: r-bioqc: Update to 1.32.0.
* gnu/packages/bioconductor.scm (r-bioqc): Update to 1.32.0.

Change-Id: If59869b7ced6952d277b9fb45a25bd903abb9bb2
2024-05-08 12:53:40 +02:00
Ricardo Wurmus
84047fe00d
gnu: r-bionet: Update to 1.64.0.
* gnu/packages/bioconductor.scm (r-bionet): Update to 1.64.0.

Change-Id: I3a66573dfe5b4a2758bea8e7af6a05b22a14b218
2024-05-08 12:53:40 +02:00
Ricardo Wurmus
7315d4d4e1
gnu: r-bionero: Update to 1.12.0.
* gnu/packages/bioconductor.scm (r-bionero): Update to 1.12.0.

Change-Id: I17d7d7bab2ea647e5a49c8f8482251dac34edda2
2024-05-08 12:53:40 +02:00
Ricardo Wurmus
3150174b01
gnu: r-biomvrcns: Update to 1.44.0.
* gnu/packages/bioconductor.scm (r-biomvrcns): Update to 1.44.0.

Change-Id: I7a392cab724c7757b4e41e472fd9644031674ddb
2024-05-08 12:53:40 +02:00
Ricardo Wurmus
65e8360b94
gnu: r-biomvcclass: Update to 1.72.0.
* gnu/packages/bioconductor.scm (r-biomvcclass): Update to 1.72.0.

Change-Id: I64be6be30c5a64517cc285842b438a9bbfd9b463
2024-05-08 12:53:40 +02:00
Ricardo Wurmus
f6436cd8cc
gnu: r-mvcclass: Update to 1.78.0.
* gnu/packages/bioconductor.scm (r-mvcclass): Update to 1.78.0.

Change-Id: Ib40c3da90a3a77dbac7563eb1c3053669069325c
2024-05-08 12:53:40 +02:00
Ricardo Wurmus
d310e9ea81
gnu: r-biomformat: Update to 1.32.0.
* gnu/packages/bioconductor.scm (r-biomformat): Update to 1.32.0.

Change-Id: I6d789e28a5f87ed6af111c20346c388e00f75697
2024-05-08 12:53:40 +02:00
Ricardo Wurmus
f8cb2a50dc
gnu: r-biodb: Update to 1.12.0.
* gnu/packages/bioconductor.scm (r-biodb): Update to 1.12.0.

Change-Id: If7001f4b7fd5393a45799562d2ece279e0a60215
2024-05-08 12:53:40 +02:00
Ricardo Wurmus
5748d5c626
gnu: r-biocthis: Update to 1.14.0.
* gnu/packages/bioconductor.scm (r-biocthis): Update to 1.14.0.

Change-Id: I1ee87d7a43237325ee4c4d93d9f69f0c3764a13b
2024-05-08 12:53:40 +02:00
Ricardo Wurmus
5090b976d5
gnu: r-bcrank: Update to 1.66.0.
* gnu/packages/bioconductor.scm (r-bcrank): Update to 1.66.0.

Change-Id: I33ab9ad800c550b90268e7382ca1237874ca8d86
2024-05-08 12:53:40 +02:00
Ricardo Wurmus
a791fbd1a3
gnu: r-bbcanalyzer: Update to 1.34.0.
* gnu/packages/bioconductor.scm (r-bbcanalyzer): Update to 1.34.0.

Change-Id: I14da55ec9487fe641aac8e7e85708253afc1bc83
2024-05-08 12:53:40 +02:00
Ricardo Wurmus
856c5c775f
gnu: r-baynorm: Update to 1.22.0.
* gnu/packages/bioconductor.scm (r-baynorm): Update to 1.22.0.

Change-Id: I49339ce8e370d45a1c2b018d14dc38a2ce1a8fef
2024-05-08 12:53:40 +02:00
Ricardo Wurmus
019b2f05a3
gnu: r-bayesspace: Update to 1.14.0.
* gnu/packages/bioconductor.scm (r-bayesspace): Update to 1.14.0.

Change-Id: Id08d540943a7821eba58dbfd933cc1efb30059aa
2024-05-08 12:53:40 +02:00
Ricardo Wurmus
92383b27d6
gnu: r-bayesknockdown: Update to 1.30.0.
* gnu/packages/bioconductor.scm (r-bayesknockdown): Update to 1.30.0.

Change-Id: I02fd2b4f87eca8e9ef6446a05f1b17445b37698c
2024-05-08 12:53:40 +02:00
Ricardo Wurmus
a088ccde60
gnu: r-basilisk: Update to 1.16.0.
* gnu/packages/bioconductor.scm (r-basilisk): Update to 1.16.0.

Change-Id: I48bf7fef391d1025cc348b6f76538523c4adb1e8
2024-05-08 12:53:40 +02:00
Ricardo Wurmus
4cf075578a
gnu: r-basilisk-utils: Update to 1.16.0.
* gnu/packages/bioconductor.scm (r-basilisk-utils): Update to 1.16.0.

Change-Id: I4c6a737383c616b990a880848edfae7fec2d0ee5
2024-05-08 12:53:40 +02:00
Ricardo Wurmus
a6a6760a3e
gnu: r-basicstarrseq: Update to 1.32.0.
* gnu/packages/bioconductor.scm (r-basicstarrseq): Update to 1.32.0.

Change-Id: I282493d98bc9d765ac29a28c58bc6531b0153dd5
2024-05-08 12:53:40 +02:00
Ricardo Wurmus
f5ac7b45a1
gnu: r-basics: Update to 2.16.0.
* gnu/packages/bioconductor.scm (r-basics): Update to 2.16.0.

Change-Id: Ie3d41d7d58bc45d9e95379d0d1523e21e09009e0
2024-05-08 12:53:40 +02:00
Ricardo Wurmus
f01e5511a2
gnu: r-basic4cseq: Update to 1.40.0.
* gnu/packages/bioconductor.scm (r-basic4cseq): Update to 1.40.0.

Change-Id: Idba4d11fc6def781e93c7d575c93f09c546e3170
2024-05-08 12:53:40 +02:00
Ricardo Wurmus
03d957d0db
gnu: r-dir-expiry: Update to 1.12.0.
* gnu/packages/bioconductor.scm (r-dir-expiry): Update to 1.12.0.

Change-Id: I5d75a7d3e56963c653d20b3c9cce8023b76306ac
2024-05-08 12:53:39 +02:00
Ricardo Wurmus
d80573f55e
gnu: r-genetclassifier: Update to 1.44.0.
* gnu/packages/bioconductor.scm (r-genetclassifier): Update to 1.44.0.

Change-Id: I750ee3bacbf9e819ef0853a3f951f4f32ab7b77e
2024-05-08 12:53:39 +02:00
Ricardo Wurmus
249598455d
gnu: r-minet: Update to 3.62.0.
* gnu/packages/bioconductor.scm (r-minet): Update to 3.62.0.

Change-Id: I2519b6e7526c481bf58f2ba75b2e0a1381f41679
2024-05-08 12:53:39 +02:00
Ricardo Wurmus
581f74075e
gnu: r-biobtreer: Update to 1.16.0.
* gnu/packages/bioconductor.scm (r-biobtreer): Update to 1.16.0.

Change-Id: I8917872cb9e42225fa69750d50b66c745810c58d
2024-05-08 12:53:39 +02:00
Ricardo Wurmus
736fcfd110
gnu: r-bgeedb: Update to 2.30.0.
* gnu/packages/bioconductor.scm (r-bgeedb): Update to 2.30.0.

Change-Id: I61720c75925a44f1c6e8c94d8ca18271005a662c
2024-05-08 12:53:39 +02:00
Ricardo Wurmus
ffb3969e8a
gnu: r-beclear: Update to 2.20.0.
* gnu/packages/bioconductor.scm (r-beclear): Update to 2.20.0.

Change-Id: I16ff50c678cf7e56002083f8e9c1eec3053354d1
2024-05-08 12:53:39 +02:00
Ricardo Wurmus
6aed2982ec
gnu: r-megadepth: Update to 1.14.0.
* gnu/packages/bioconductor.scm (r-megadepth): Update to 1.14.0.
[inputs]: Remove megadepth.

Change-Id: Ia0fc8a1e7266a996249f04447eabf9cf86b00f07
2024-05-08 12:53:39 +02:00
Ricardo Wurmus
3f806f9667
gnu: r-ballgown: Update to 2.36.0.
* gnu/packages/bioconductor.scm (r-ballgown): Update to 2.36.0.

Change-Id: Ia60e45a814c4f6bb873b25a7e959b593fcdebb0d
2024-05-08 12:53:39 +02:00
Ricardo Wurmus
531842c537
gnu: r-guitar: Update to 2.20.0.
* gnu/packages/bioconductor.scm (r-guitar): Update to 2.20.0.

Change-Id: Ic9bb33324aac858f5fc056cf0fe393f7031c949e
2024-05-08 12:53:39 +02:00
Ricardo Wurmus
7579df216b
gnu: r-chromstar: Update to 1.30.0.
* gnu/packages/bioconductor.scm (r-chromstar): Update to 1.30.0.

Change-Id: Id729863b51653a14a0e30558065d69dc14df375e
2024-05-08 12:53:39 +02:00
Ricardo Wurmus
6cf9da8ff3
gnu: r-snpstats: Update to 1.54.0.
* gnu/packages/bioconductor.scm (r-snpstats): Update to 1.54.0.

Change-Id: Iea939d944d7574c4da573e2d84b43850dc204762
2024-05-08 12:53:39 +02:00
Ricardo Wurmus
50df6f88e3
gnu: r-snprelate: Update to 1.38.0.
* gnu/packages/bioconductor.scm (r-snprelate): Update to 1.38.0.

Change-Id: Ic7b56fc80e6983ee4f86a2de43ad1f831584911f
2024-05-08 12:53:39 +02:00
Ricardo Wurmus
38f7662dc5
gnu: r-pathview: Update to 1.44.0.
* gnu/packages/bioconductor.scm (r-pathview): Update to 1.44.0.

Change-Id: I1b186e58ff9116f403295122f02e03b018de0f1c
2024-05-08 12:53:39 +02:00
Ricardo Wurmus
9a0b026184
gnu: r-parody: Update to 1.62.0.
* gnu/packages/bioconductor.scm (r-parody): Update to 1.62.0.

Change-Id: I558464136d242e6e6d62974b2b8df324faf5c0f2
2024-05-08 12:53:39 +02:00
Ricardo Wurmus
6a5fa34dc1
gnu: r-ldblock: Update to 1.34.0.
* gnu/packages/bioconductor.scm (r-ldblock): Update to 1.34.0.

Change-Id: Ia0a9b517faf126ad075b099ed407a8a233080b2a
2024-05-08 12:53:39 +02:00
Ricardo Wurmus
3245af8e57
gnu: r-kegggraph: Update to 1.64.0.
* gnu/packages/bioconductor.scm (r-kegggraph): Update to 1.64.0.

Change-Id: I1919e5f27747edc745a7e0c65c71d0126e63bde8
2024-05-08 12:53:39 +02:00
Ricardo Wurmus
a0e8a21ef2
gnu: r-gwastools: Update to 1.50.0.
* gnu/packages/bioconductor.scm (r-gwastools): Update to 1.50.0.

Change-Id: Id076c41a4f2f189af0df10f90ed72a5a69154a68
2024-05-08 12:53:39 +02:00
Ricardo Wurmus
6a24c29ef6
gnu: r-gwascat: Update to 2.36.0.
* gnu/packages/bioconductor.scm (r-gwascat): Update to 2.36.0.

Change-Id: I476740369af4d527f94adc2f06c9af354d49b6fc
2024-05-08 12:53:39 +02:00
Ricardo Wurmus
305ee43427
gnu: r-gviz: Update to 1.48.0.
* gnu/packages/bioconductor.scm (r-gviz): Update to 1.48.0.

Change-Id: I68a479de59a531aa8ab7b376a69a1766fddeea7d
2024-05-08 12:53:39 +02:00
Ricardo Wurmus
59a8eb9d88
gnu: r-ggbio: Update to 1.52.0.
* gnu/packages/bioconductor.scm (r-ggbio): Update to 1.52.0.

Change-Id: I45c0988944ecdc2dc88f7638723a7fe25e6fcec5
2024-05-08 12:53:39 +02:00
Ricardo Wurmus
f2e5f38824
gnu: r-erma: Update to 1.20.0.
* gnu/packages/bioconductor.scm (r-erma): Update to 1.20.0.

Change-Id: Ic80ebff0510de24ed5bf8afbf199c06489e7a3f5
2024-05-08 12:53:39 +02:00
Ricardo Wurmus
0a81d3c584
gnu: r-catalyst: Update to 1.28.0.
* gnu/packages/bioconductor.scm (r-catalyst): Update to 1.28.0.

Change-Id: Ic2373881717e43db043347438c7801f4b3d3f7ad
2024-05-08 12:53:39 +02:00
Ricardo Wurmus
269b2e1765
gnu: r-msmstests: Update to 1.42.0.
* gnu/packages/bioconductor.scm (r-msmstests): Update to 1.42.0.

Change-Id: Ibe34483ca14f6f32d3b1066dad637b7a3ca8f65c
2024-05-08 12:53:39 +02:00
Ricardo Wurmus
c2bd727d05
gnu: r-msmseda: Update to 1.42.0.
* gnu/packages/bioconductor.scm (r-msmseda): Update to 1.42.0.

Change-Id: I23422c5a2680af92f5101e84750dcfa694f93dc9
2024-05-08 12:53:39 +02:00
Ricardo Wurmus
86957999bd
gnu: r-biocio: Update to 1.14.0.
* gnu/packages/bioconductor.scm (r-biocio): Update to 1.14.0.

Change-Id: I5095d4c6ea7ab93645dc8f7326f3688fcc9b11e7
2024-05-08 12:53:39 +02:00
Ricardo Wurmus
4d5be1b038
gnu: r-msfeatures: Update to 1.12.0.
* gnu/packages/bioconductor.scm (r-msfeatures): Update to 1.12.0.

Change-Id: Iac6354decbe9d887127c41340d2585b9e1ed0b15
2024-05-08 12:53:38 +02:00
Ricardo Wurmus
10915205bc
gnu: r-mscoreutils: Update to 1.16.0.
* gnu/packages/bioconductor.scm (r-mscoreutils): Update to 1.16.0.

Change-Id: I85aa872f87fd249b22d91aefff57f99426a92147
2024-05-08 12:53:38 +02:00
Ricardo Wurmus
b6e497ee17
gnu: r-delayedmatrixstats: Update to 1.26.0.
* gnu/packages/bioconductor.scm (r-delayedmatrixstats): Update to 1.26.0.

Change-Id: I7ce26d8e3df2bbac7d9b266072f9f906981a476a
2024-05-08 12:53:38 +02:00
Ricardo Wurmus
bd63b1a1e9
gnu: r-spatialexperiment: Update to 1.14.0.
* gnu/packages/bioconductor.scm (r-spatialexperiment): Update to 1.14.0.

Change-Id: Ib35abae88c1566641585d04dc1bddb794d969a6f
2024-05-08 12:53:38 +02:00
Ricardo Wurmus
1d1804e753
gnu: r-sparsematrixstats: Update to 1.16.0.
* gnu/packages/bioconductor.scm (r-sparsematrixstats): Update to 1.16.0.

Change-Id: I4c8c6c69be0b1dee2ee39dab4fa54ae04139d27c
2024-05-08 12:53:38 +02:00
Ricardo Wurmus
3a9161dd42
gnu: r-sparsearray: Update to 1.4.1.
* gnu/packages/bioconductor.scm (r-sparsearray): Update to 1.4.1.

Change-Id: Iab6d481534f68cc171c107a70c1e73a4b89686bc
2024-05-08 12:53:38 +02:00
Ricardo Wurmus
b5d4e6a641
gnu: r-scran: Update to 1.32.0.
* gnu/packages/bioconductor.scm (r-scran): Update to 1.32.0.

Change-Id: I52c93ce19c97f533b9a2b13c54a40488e7e297ba
2024-05-08 12:53:38 +02:00
Ricardo Wurmus
8cc178d752
gnu: r-scater: Update to 1.32.0.
* gnu/packages/bioconductor.scm (r-scater): Update to 1.32.0.

Change-Id: I9f2748bf1497164bb3ed6cae329b521565488b4e
2024-05-08 12:53:38 +02:00
Ricardo Wurmus
480444f16a
gnu: r-scuttle: Update to 1.14.0.
* gnu/packages/bioconductor.scm (r-scuttle): Update to 1.14.0.

Change-Id: Ib499f1130708d6455f3539f3d32af5e2be933023
2024-05-08 12:53:38 +02:00
Ricardo Wurmus
b59a84b571
gnu: r-singler: Update to 2.6.0.
* gnu/packages/bioconductor.scm (r-singler): Update to 2.6.0.

Change-Id: Idd0a8ee8559913c0534e6be46dcf49b3a3c1a2c1
2024-05-08 12:53:38 +02:00
Ricardo Wurmus
e478762c88
gnu: r-singlecellexperiment: Update to 1.26.0.
* gnu/packages/bioconductor.scm (r-singlecellexperiment): Update to 1.26.0.

Change-Id: Ie7720939014e2e43a90a1c93547492dadc7ab333
2024-05-08 12:53:38 +02:00
Ricardo Wurmus
3b9c258247
gnu: r-chromvar: Update to 1.26.0.
* gnu/packages/bioconductor.scm (r-chromvar): Update to 1.26.0.

Change-Id: Ib13a2f5268b9d49898ca428490af0ed83f55ba87
2024-05-08 12:53:38 +02:00
Ricardo Wurmus
fe25e3608b
gnu: r-motifmatchr: Update to 1.26.0.
* gnu/packages/bioconductor.scm (r-motifmatchr): Update to 1.26.0.

Change-Id: I829ce102796a01db25be22eba3b6eeb3dbd07b31
2024-05-08 12:53:38 +02:00
Ricardo Wurmus
aec0563082
gnu: r-maftools: Update to 2.20.0.
* gnu/packages/bioconductor.scm (r-maftools): Update to 2.20.0.

Change-Id: Iad2bb2427a16d8fb4cee3f06a8add4703d38a2df
2024-05-08 12:53:38 +02:00
Ricardo Wurmus
3b55a84885
gnu: r-tfbstools: Update to 1.42.0.
* gnu/packages/bioconductor.scm (r-tfbstools): Update to 1.42.0.
[propagated-inputs]: Add r-pwalign.

Change-Id: I3fb7797efc408546f3968cf99db6b818bed5da70
2024-05-08 12:53:38 +02:00
Ricardo Wurmus
7f66827659
gnu: r-cner: Update to 1.40.0.
* gnu/packages/bioconductor.scm (r-cner): Update to 1.40.0.
[propagated-inputs]: Add r-pwalign.

Change-Id: I3a4ec39d509b2d747e323f26e1e27a3ad1bb3048
2024-05-08 12:53:38 +02:00
Ricardo Wurmus
a0066612c4
gnu: r-beaddatapackr: Update to 1.56.0.
* gnu/packages/bioconductor.scm (r-beaddatapackr): Update to 1.56.0.

Change-Id: I0df5dc9740ef5a618d5ee63f30236a885f64d5f4
2024-05-08 12:53:38 +02:00
Ricardo Wurmus
5788a467bf
gnu: r-beadarray: Update to 2.54.0.
* gnu/packages/bioconductor.scm (r-beadarray): Update to 2.54.0.

Change-Id: Id76194ba8189f177156220bb16779fe20f6fc6ad
2024-05-08 12:53:38 +02:00
Ricardo Wurmus
e0320b5d04
gnu: r-beachmat: Update to 2.20.0.
* gnu/packages/bioconductor.scm (r-beachmat): Update to 2.20.0.

Change-Id: I2651545a5f210820e5c730a0da498af14d013439
2024-05-08 12:53:38 +02:00
Ricardo Wurmus
4a3bdfdc87
gnu: r-rhdf5lib: Update to 1.26.0.
* gnu/packages/bioconductor.scm (r-rhdf5lib): Update to 1.26.0.

Change-Id: I564c7b363dc1b53231258ddf7aee28859322b144
2024-05-08 12:53:38 +02:00
Ricardo Wurmus
1c7ba57959
gnu: r-hdf5array: Update to 1.32.0.
* gnu/packages/bioconductor.scm (r-hdf5array): Update to 1.32.0.
[inputs]: Remove zlib.

Change-Id: Ib1980a75b1a86c279aff4486c9ed234e78dd968c
2024-05-08 12:53:38 +02:00
Ricardo Wurmus
ea5cc8cf19
gnu: r-hitc: Update to 1.48.0.
* gnu/packages/bioconductor.scm (r-hitc): Update to 1.48.0.

Change-Id: Idf5834d1066f6d9012b41a50dbf0fd7288fea8cb
2024-05-08 12:53:38 +02:00
Ricardo Wurmus
47d93b5a72
gnu: r-fithic: Update to 1.30.0.
* gnu/packages/bioconductor.scm (r-fithic): Update to 1.30.0.

Change-Id: Ic0a0f7e42cf5586488b7b0b0141bc6988f0b73d4
2024-05-08 12:53:38 +02:00
Ricardo Wurmus
a0e09d099f
gnu: r-fishpond: Update to 2.10.0.
* gnu/packages/bioconductor.scm (r-fishpond): Update to 2.10.0.

Change-Id: If118e6dc0fc42ae7b83dc9697de8627bc03560cc
2024-05-08 12:53:37 +02:00
Ricardo Wurmus
612f4acea2
gnu: r-rgraphviz: Update to 2.48.0.
* gnu/packages/bioconductor.scm (r-rgraphviz): Update to 2.48.0.

Change-Id: I4a75273197bfb156c65a01929488fcb0fdfface7
2024-05-08 12:53:37 +02:00
Ricardo Wurmus
85f8909e12
gnu: r-s4vectors: Update to 0.42.0.
* gnu/packages/bioconductor.scm (r-s4vectors): Update to 0.42.0.

Change-Id: Icf31b9dd5636fd7aa32962a52694c79347553d82
2024-05-08 12:53:37 +02:00
Ricardo Wurmus
6f8e2e86d9
gnu: r-s4arrays: Update to 1.4.0.
* gnu/packages/bioconductor.scm (r-s4arrays): Update to 1.4.0.

Change-Id: I988fc426af0b86a4a51ebd19e32c925359451ea6
2024-05-08 12:53:37 +02:00
Ricardo Wurmus
5ce7f0fc7d
gnu: r-preprocesscore: Update to 1.66.0.
* gnu/packages/bioconductor.scm (r-preprocesscore): Update to 1.66.0.

Change-Id: I7900eb76856228194d406a31a7857723da3d6cbe
2024-05-08 12:53:37 +02:00
Ricardo Wurmus
8a5bda7435
gnu: r-icens: Update to 1.76.0.
* gnu/packages/bioconductor.scm (r-icens): Update to 1.76.0.

Change-Id: Ia343622426866a980c56b092d1fcf1088820273b
2024-05-08 12:53:37 +02:00
Ricardo Wurmus
134da4611e
gnu: r-m3c: Update to 1.26.0.
* gnu/packages/bioconductor.scm (r-m3c): Update to 1.26.0.

Change-Id: Id2c7aa0d6841ba2de27e2e71d9ca4ee85500bd47
2024-05-08 12:53:37 +02:00
Ricardo Wurmus
3c811d9bc7
gnu: r-rgreat: Update to 2.6.0.
* gnu/packages/bioconductor.scm (r-rgreat): Update to 2.6.0.

Change-Id: I8ec9065aea86ab4fe7ff659af035441ea5877373
2024-05-08 12:53:37 +02:00
Ricardo Wurmus
09932cf188
gnu: r-pcatools: Update to 2.16.0.
* gnu/packages/bioconductor.scm (r-pcatools): Update to 2.16.0.

Change-Id: I0cdce782ed951fe449618c340571cb0b81a5a434
2024-05-08 12:53:37 +02:00
Ricardo Wurmus
35a8182a32
gnu: r-biodist: Update to 1.76.0.
* gnu/packages/bioconductor.scm (r-biodist): Update to 1.76.0.

Change-Id: I2cf18df7f608c4eefd46788b12ff4414457a53fa
2024-05-08 12:53:37 +02:00
Ricardo Wurmus
27e7802bff
gnu: r-biocworkflowtools: Update to 1.30.0.
* gnu/packages/bioconductor.scm (r-biocworkflowtools): Update to 1.30.0.

Change-Id: Iee8e315cf49003bce01720e96bd589fb0ac92402
2024-05-08 12:53:37 +02:00
Ricardo Wurmus
53634d78c7
gnu: r-biocset: Update to 1.18.0.
* gnu/packages/bioconductor.scm (r-biocset): Update to 1.18.0.

Change-Id: Ia0adef15c468c8642873bac58e71e3a949af5065
2024-05-08 12:53:37 +02:00
Ricardo Wurmus
fa0676265e
gnu: r-biocor: Update to 1.28.0.
* gnu/packages/bioconductor.scm (r-biocor): Update to 1.28.0.

Change-Id: I76505cecfe6c8c51ee02ddb4517123dde6bd2db0
2024-05-08 12:53:37 +02:00
Ricardo Wurmus
8646c2c5af
gnu: r-bioconcotk: Update to 1.24.0.
* gnu/packages/bioconductor.scm (r-bioconcotk): Update to 1.24.0.

Change-Id: Ibbbb8d3c63c6c9d6fd707b6ba54db022c6894593
2024-05-08 12:53:37 +02:00
Ricardo Wurmus
6aaac102bc
gnu: r-multiassayexperiment: Update to 1.30.1.
* gnu/packages/bioconductor.scm (r-multiassayexperiment): Update to 1.30.1.

Change-Id: I22a3faf35e81df07177b364e3785d09e43218f74
2024-05-08 12:53:37 +02:00
Ricardo Wurmus
f118920c38
gnu: r-grohmm: Update to 1.38.0.
* gnu/packages/bioconductor.scm (r-grohmm): Update to 1.38.0.

Change-Id: I98c6fa88c05da2cf08f79d5e31d9bcefeedd69db
2024-05-08 12:53:37 +02:00
Ricardo Wurmus
2d925ce80e
gnu: r-experimenthubdata: Update to 1.30.0.
* gnu/packages/bioconductor.scm (r-experimenthubdata): Update to 1.30.0.

Change-Id: I6c13e5cef512e7122016908afc71c447a7d7990f
2024-05-08 12:53:37 +02:00
Ricardo Wurmus
bdffd215a6
gnu: r-experimenthub: Update to 2.12.0.
* gnu/packages/bioconductor.scm (r-experimenthub): Update to 2.12.0.

Change-Id: I9c78efff6d3cdbb9227a3584048b9ef3eca1c19f
2024-05-08 12:53:37 +02:00
Ricardo Wurmus
2e0f0f44c0
gnu: r-biocviews: Update to 1.72.0.
* gnu/packages/bioconductor.scm (r-biocviews): Update to 1.72.0.

Change-Id: I12ba24d16cce3c9aea674b5a7bb48ae837468fe1
2024-05-08 12:53:37 +02:00
Ricardo Wurmus
b9f227c7b8
gnu: r-biocstyle: Update to 2.32.0.
* gnu/packages/bioconductor.scm (r-biocstyle): Update to 2.32.0.

Change-Id: I88c9702a7c4d1c38a1515055513a24c40531bfd8
2024-05-08 12:53:37 +02:00
Ricardo Wurmus
000a4021b9
gnu: r-biocgraph: Update to 1.66.0.
* gnu/packages/bioconductor.scm (r-biocgraph): Update to 1.66.0.

Change-Id: I768ba4f032e742623325ddb1d02ef5603fc6d47b
2024-05-08 12:53:37 +02:00
Ricardo Wurmus
14c7c8d462
gnu: r-bioccheck: Update to 1.40.0.
* gnu/packages/bioconductor.scm (r-bioccheck): Update to 1.40.0.

Change-Id: I2ba21396e88a3a0b85ce68150446ca435ba0aef0
2024-05-08 12:53:37 +02:00
Ricardo Wurmus
efaa01c156
gnu: r-biocbaseutils: Update to 1.6.0.
* gnu/packages/bioconductor.scm (r-biocbaseutils): Update to 1.6.0.

Change-Id: I4396532de61a7bc06423c7dddaec9af096adb206
2024-05-08 12:53:37 +02:00
Ricardo Wurmus
5f6cd5a08e
gnu: r-ebarrays: Update to 2.68.0.
* gnu/packages/bioconductor.scm (r-ebarrays): Update to 2.68.0.

Change-Id: I204d9dc9f9d0cd62e2ca755f564067ef7985f7ed
2024-05-08 12:53:36 +02:00
Ricardo Wurmus
673c680099
gnu: r-reactomepa: Update to 1.48.0.
* gnu/packages/bioconductor.scm (r-reactomepa): Update to 1.48.0.

Change-Id: I89d8101b4a3e410619c92b54de864194f12eb482
2024-05-08 12:53:36 +02:00
Ricardo Wurmus
641602b9f9
gnu: r-graphite: Update to 1.50.0.
* gnu/packages/bioconductor.scm (r-graphite): Update to 1.50.0.

Change-Id: I76f3fe726fafc2437a9b6b7f00922e44265321cf
2024-05-08 12:53:36 +02:00
Ricardo Wurmus
f20f659115
gnu: r-biobroom: Update to 1.36.0.
* gnu/packages/bioconductor.scm (r-biobroom): Update to 1.36.0.

Change-Id: I7ce12a8b513c3a8de58c6c3d301f9949f0591a4e
2024-05-08 12:53:36 +02:00
Ricardo Wurmus
bdf3ab2e3b
gnu: r-bioassayr: Update to 1.42.0.
* gnu/packages/bioconductor.scm (r-bioassayr): Update to 1.42.0.

Change-Id: I6735615a04c3e8943086aa0cffb03dadb723a654
2024-05-08 12:53:36 +02:00
Ricardo Wurmus
83b7790cae
gnu: r-fmcsr: Update to 1.46.0.
* gnu/packages/bioconductor.scm (r-fmcsr): Update to 1.46.0.

Change-Id: Id233057e337e67a3e1edfaaf10ef5e273901436b
2024-05-08 12:53:36 +02:00
Ricardo Wurmus
16d94b478d
gnu: r-chemminer: Update to 3.56.0.
* gnu/packages/bioconductor.scm (r-chemminer): Update to 3.56.0.

Change-Id: I04a8ec120f3c949ede3b6c38590d56455a1b32dc
2024-05-08 12:53:36 +02:00
Ricardo Wurmus
cfc7f49dc5
gnu: r-chemmineob: Update to 1.42.0.
* gnu/packages/bioconductor.scm (r-chemmineob): Update to 1.42.0.

Change-Id: I6de9b4e325ed48535934a23a284ffc8f6b51c77a
2024-05-08 12:53:36 +02:00
Ricardo Wurmus
0b85ec45ee
gnu: r-biggr: Update to 1.40.0.
* gnu/packages/bioconductor.scm (r-biggr): Update to 1.40.0.

Change-Id: Ic28d925fef3901693c7d7769a494bccc8da5121b
2024-05-08 12:53:36 +02:00
Ricardo Wurmus
25c010f0a7
gnu: r-hyperdraw: Update to 1.56.0.
* gnu/packages/bioconductor.scm (r-hyperdraw): Update to 1.56.0.

Change-Id: I6279b34131142abcf14a8fd08b9faa1298013a85
2024-05-08 12:53:36 +02:00
Ricardo Wurmus
9ec37522fd
gnu: r-hypergraph: Update to 1.76.0.
* gnu/packages/bioconductor.scm (r-hypergraph): Update to 1.76.0.

Change-Id: Id3778bdb1eb98ef71b6dbca207b1a96acf8e8e28
2024-05-08 12:53:36 +02:00
Ricardo Wurmus
6006340e76
gnu: r-hybridmtest: Update to 1.48.0.
* gnu/packages/bioconductor.scm (r-hybridmtest): Update to 1.48.0.

Change-Id: I89893ca526c27493f3966e3d777366024dc0fa91
2024-05-08 12:53:36 +02:00
Ricardo Wurmus
3a7e38fd78
gnu: r-rsbml: Update to 2.62.0.
* gnu/packages/bioconductor.scm (r-rsbml): Update to 2.62.0.

Change-Id: I870e9d67c6f8123c53ec72c49d934613e25d9c77
2024-05-08 12:53:36 +02:00
Ricardo Wurmus
1e2a028525
gnu: r-bifet: Update to 1.24.0.
* gnu/packages/bioconductor.scm (r-bifet): Update to 1.24.0.

Change-Id: I1737a7b834c834436791eb407c275f1b322d2c4c
2024-05-08 12:53:36 +02:00
Ricardo Wurmus
c1d8f61898
gnu: r-bicare: Update to 1.62.0.
* gnu/packages/bioconductor.scm (r-bicare): Update to 1.62.0.

Change-Id: I9861a66178d503c45122a64a219086ef9cd8754e
2024-05-08 12:53:36 +02:00
Ricardo Wurmus
4ce9c19290
gnu: r-bhc: Update to 1.56.0.
* gnu/packages/bioconductor.scm (r-bhc): Update to 1.56.0.

Change-Id: I0bba03639a3f1b301214051fd00b6f13de49f433
2024-05-08 12:53:36 +02:00
Ricardo Wurmus
40a55d3f50
gnu: r-bgx: Update to 1.70.0.
* gnu/packages/bioconductor.scm (r-bgx): Update to 1.70.0.

Change-Id: Ibbbae41e23ab19f5cba7e2264fa2c2848a38a15f
2024-05-08 12:53:36 +02:00
Ricardo Wurmus
841b39867d
gnu: r-acde: Update to 1.34.0.
* gnu/packages/bioconductor.scm (r-acde): Update to 1.34.0.

Change-Id: Iad20ebfe118270c0f878ac1d3c7c0cbe521ab359
2024-05-08 12:53:36 +02:00
Ricardo Wurmus
31878ae8ec
gnu: r-acme: Update to 2.60.0.
* gnu/packages/bioconductor.scm (r-acme): Update to 2.60.0.

Change-Id: I3d29a5f5c4df1f77b5dc50415d537cde96e53437
2024-05-08 12:53:36 +02:00
Ricardo Wurmus
98cae12891
gnu: r-acgh: Update to 1.82.0.
* gnu/packages/bioconductor.scm (r-acgh): Update to 1.82.0.

Change-Id: I2e354918b664aeb4f58aff1f7dd6c7ade652dcca
2024-05-08 12:53:36 +02:00
Ricardo Wurmus
7619b4b16c
gnu: r-ace: Update to 1.22.0.
* gnu/packages/bioconductor.scm (r-ace): Update to 1.22.0.

Change-Id: I05b8a0c1b400f2789691358a96653abd91761b57
2024-05-08 12:53:36 +02:00
Ricardo Wurmus
1d14455948
gnu: r-universalmotif: Update to 1.22.0.
* gnu/packages/bioconductor.scm (r-universalmotif): Update to 1.22.0.

Change-Id: I8162abd88011435179e0c3ca41fe9d058f8f4522
2024-05-08 12:53:36 +02:00
Ricardo Wurmus
23d29d93dd
gnu: r-ucell: Update to 2.8.0.
* gnu/packages/bioconductor.scm (r-ucell): Update to 2.8.0.

Change-Id: I6c7867ce56a96e9320f050c9653ad558d9c9d102
2024-05-08 12:53:35 +02:00
Ricardo Wurmus
30cdef4c82
gnu: r-variancepartition: Update to 1.34.0.
* gnu/packages/bioconductor.scm (r-variancepartition): Update to 1.34.0.

Change-Id: I9908a4020f5f17e015d9be1f54ea0383e5638759
2024-05-08 12:53:35 +02:00
Ricardo Wurmus
31325acf18
gnu: r-variantfiltering: Update to 1.40.0.
* gnu/packages/bioconductor.scm (r-variantfiltering): Update to 1.40.0.

Change-Id: I3e41dfc9a50657003144c8b767a5d424be571df2
2024-05-08 12:53:35 +02:00
Ricardo Wurmus
2eb6a2fcf4
gnu: r-tilingarray: Update to 1.82.0.
* gnu/packages/bioconductor.scm (r-tilingarray): Update to 1.82.0.

Change-Id: I1353b206d83001b8965a949e55908a1306a8de7c
2024-05-08 12:53:35 +02:00
Ricardo Wurmus
c7fe318467
gnu: r-wavcluster: Update to 2.38.0.
* gnu/packages/bioconductor.scm (r-wavcluster): Update to 2.38.0.

Change-Id: I285c6f42b2cde094e6c32e95b473c9540045866b
2024-05-08 12:53:35 +02:00
Ricardo Wurmus
b3b6f34f35
gnu: r-bigmelon: Update to 1.30.0.
* gnu/packages/bioconductor.scm (r-bigmelon): Update to 1.30.0.
[native-inputs]: Remove r-knitr.

Change-Id: I5fd606d69b30ad6768cfd11594c6be66a9ae56fe
2024-05-08 12:53:35 +02:00
Ricardo Wurmus
c7dfb85604
gnu: r-gdsfmt: Update to 1.40.0.
* gnu/packages/bioconductor.scm (r-gdsfmt): Update to 1.40.0.

Change-Id: I972ee519a6c81bb88577b8ec86ca7a6ff6ab39d6
2024-05-08 12:53:35 +02:00
Ricardo Wurmus
2ff8b4be6d
gnu: r-watermelon: Update to 2.10.0.
* gnu/packages/bioconductor.scm (r-watermelon): Update to 2.10.0.

Change-Id: Iee6a26d982a87f586ad34625e8cd64d9df839fe1
2024-05-08 12:53:35 +02:00
Ricardo Wurmus
45a4d44004
gnu: r-roc: Update to 1.80.0.
* gnu/packages/bioconductor.scm (r-roc): Update to 1.80.0.

Change-Id: I4053fc2e0ab8298b95da11357c3543bdc4480272
2024-05-08 12:53:35 +02:00
Ricardo Wurmus
c25e80f57c
gnu: r-genie3: Update to 1.26.0.
* gnu/packages/bioconductor.scm (r-genie3): Update to 1.26.0.

Change-Id: I7eb05930f49b4c44678e5069cda9083fa3b2d86a
2024-05-08 12:53:35 +02:00
Ricardo Wurmus
15f55f8107
gnu: r-circrnaprofiler: Update to 1.18.0.
* gnu/packages/bioconductor.scm (r-circrnaprofiler): Update to 1.18.0.

Change-Id: I5249ad323937706edb460e6f5dbc67f3b89aeea4
2024-05-08 12:53:35 +02:00
Ricardo Wurmus
a675626580
gnu: r-cicero: Update to 1.22.0.
* gnu/packages/bioconductor.scm (r-cicero): Update to 1.22.0.

Change-Id: Iec08b05b328caf90a1a97b1dcec68eda81817f0a
2024-05-08 12:53:35 +02:00
Ricardo Wurmus
b9dc1c39a9
gnu: r-chicago: Update to 1.32.0.
* gnu/packages/bioconductor.scm (r-chicago): Update to 1.32.0.

Change-Id: I5ae8e14628f6ba5babf4202a16cbf2a93d4812a0
2024-05-08 12:53:35 +02:00
Ricardo Wurmus
b189f75029
gnu: r-rcistarget: Update to 1.24.0.
* gnu/packages/bioconductor.scm (r-rcistarget): Update to 1.24.0.
[propagated-inputs]: Add r-zoo.

Change-Id: Ifef3f1d3a3b0a6aa960d96d702c380c0b721707c
2024-05-08 12:53:35 +02:00
Ricardo Wurmus
ed72f9bf20
gnu: r-depecher: Update to 1.20.0.
* gnu/packages/bioconductor.scm (r-depecher): Update to 1.20.0.
[propagated-inputs]: Add r-clusterr.

Change-Id: I438cfd508bb90af157a1b17a520d17374b5e1007
2024-05-08 12:53:35 +02:00
Ricardo Wurmus
e258bc7be1
gnu: r-mixomics: Update to 6.28.0.
* gnu/packages/bioconductor.scm (r-mixomics): Update to 6.28.0.

Change-Id: I878f0f648b15fc17a69c8b72aedf88c8d9b05f1d
2024-05-08 12:53:35 +02:00
Ricardo Wurmus
7a3af14943
gnu: r-flowsom: Update to 2.12.0.
* gnu/packages/bioconductor.scm (r-flowsom): Update to 2.12.0.

Change-Id: I0bd56b6915c9aed7ec5e86191f3a90ee5126bd79
2024-05-08 12:53:35 +02:00
Ricardo Wurmus
3263b67123
gnu: r-opencyto: Update to 2.16.0.
* gnu/packages/bioconductor.scm (r-opencyto): Update to 2.16.0.

Change-Id: I4b0121062299fac4831edaa096a1efdf70a8b7ea
2024-05-08 12:53:35 +02:00
Ricardo Wurmus
4544b49e78
gnu: r-flowstats: Update to 4.16.0.
* gnu/packages/bioconductor.scm (r-flowstats): Update to 4.16.0.

Change-Id: I41a6906f6856b3bb7ecdcc9b5376213c80b4b55c
2024-05-08 12:53:35 +02:00
Ricardo Wurmus
13652b01d2
gnu: r-flowworkspace: Update to 4.16.0.
* gnu/packages/bioconductor.scm (r-flowworkspace): Update to 4.16.0.

Change-Id: Ib561cb7faf49b258a9fba370d62b2d2d3babff4d
2024-05-08 12:53:35 +02:00
Ricardo Wurmus
cf25a9b0f2
gnu: r-rprotobuflib: Update to 2.16.0.
* gnu/packages/bioconductor.scm (r-rprotobuflib): Update to 2.16.0.

Change-Id: I9ec03796c28a24ee683580c8be8236fc46ec4895
2024-05-08 12:53:35 +02:00
Ricardo Wurmus
34880ea220
gnu: r-flowclust: Update to 3.42.0.
* gnu/packages/bioconductor.scm (r-flowclust): Update to 3.42.0.

Change-Id: Ibdffc56edbbc159b090302ef9491c176b93ad993
2024-05-08 12:53:35 +02:00
Ricardo Wurmus
1c80d54d79
gnu: r-flowviz: Update to 1.68.0.
* gnu/packages/bioconductor.scm (r-flowviz): Update to 1.68.0.

Change-Id: I09f751cb47129b67903fb0b279a9c1b7b3555f7a
2024-05-08 12:53:34 +02:00
Ricardo Wurmus
90cdcc1227
gnu: r-ggcyto: Update to 1.32.0.
* gnu/packages/bioconductor.scm (r-ggcyto): Update to 1.32.0.

Change-Id: I0a27617ec6dec5a41201ffdf4352d5d70946a990
2024-05-08 12:53:34 +02:00
Ricardo Wurmus
af2f837060
gnu: r-ncdfflow: Update to 2.50.0.
* gnu/packages/bioconductor.scm (r-ncdfflow): Update to 2.50.0.

Change-Id: I462cd25ccd4f4e96a21293d7d6bbfab68665b91c
2024-05-08 12:53:34 +02:00
Ricardo Wurmus
45c2302159
gnu: r-flowmeans: Update to 1.64.0.
* gnu/packages/bioconductor.scm (r-flowmeans): Update to 1.64.0.

Change-Id: I0b99b3c3ebf292d9e7318a5fe33900be0634ccad
2024-05-08 12:53:34 +02:00
Ricardo Wurmus
371f8a8339
gnu: r-flowcore: Update to 2.16.0.
* gnu/packages/bioconductor.scm (r-flowcore): Update to 2.16.0.

Change-Id: I545b9e5453abc33a64a96a814fff5539daa59c3e
2024-05-08 12:53:34 +02:00
Ricardo Wurmus
f3fca2f140
gnu: r-cytolib: Update to 2.16.0.
* gnu/packages/bioconductor.scm (r-cytolib): Update to 2.16.0.

Change-Id: I66bc6871d7031229ee64765732cee003283b0d19
2024-05-08 12:53:34 +02:00
Ricardo Wurmus
ebee8425fb
gnu: r-consensusclusterplus: Update to 1.68.0.
* gnu/packages/bioconductor.scm (r-consensusclusterplus): Update to 1.68.0.

Change-Id: Ic061325418b63fed6ebaf60af1b53cd5720af9d4
2024-05-08 12:53:34 +02:00
Ricardo Wurmus
ded8565517
gnu: r-flowai: Update to 1.34.0.
* gnu/packages/bioconductor.scm (r-flowai): Update to 1.34.0.

Change-Id: I7e70ec8330092de08663200317032474b339cf7b
2024-05-08 12:53:34 +02:00
Ricardo Wurmus
2cdd8e24bf
gnu: r-flames: Update to 1.10.0.
* gnu/packages/bioconductor.scm (r-flames): Update to 1.10.0.
[propagated-inputs]: Add r-iranges, r-testthat, r-tibble, r-tidyselect, and r-txdbmaker.

Change-Id: I8cdc5c4370249f98079ffa83f16320f6f07f4650
2024-05-08 12:53:34 +02:00
Ricardo Wurmus
4c63bceb85
gnu: r-rsubread: Update to 2.18.0.
* gnu/packages/bioconductor.scm (r-rsubread): Update to 2.18.0.

Change-Id: Ia60b6fbefae10e668bf2d74e8e34e0af62286c3a
2024-05-08 12:53:34 +02:00
Ricardo Wurmus
dc61187fc5
gnu: r-annotatr: Update to 1.30.0.
* gnu/packages/bioconductor.scm (r-annotatr): Update to 1.30.0.

Change-Id: Ia96de8988e70148774a002ed4a718c0e034d8470
2024-05-08 12:53:34 +02:00
Ricardo Wurmus
b1272fe391
gnu: r-biosigner: Update to 1.32.0.
* gnu/packages/bioconductor.scm (r-biosigner): Update to 1.32.0.

Change-Id: I1c9aba3807491c8cca78ecb9cfa6118ac829a83f
2024-05-08 12:53:34 +02:00
Ricardo Wurmus
35c7407925
gnu: r-ropls: Update to 1.36.0.
* gnu/packages/bioconductor.scm (r-ropls): Update to 1.36.0.

Change-Id: I38f876b16f0757fb737e68dfdde414149325bf89
2024-05-08 12:53:34 +02:00
Ricardo Wurmus
dd2f713ad2
gnu: r-multidataset: Update to 1.32.0.
* gnu/packages/bioconductor.scm (r-multidataset): Update to 1.32.0.

Change-Id: I11186aaf5e7824b622ee077386fde04e8cc6d4f8
2024-05-08 12:53:34 +02:00
Ricardo Wurmus
542f2f6368
gnu: r-birewire: Update to 3.36.0.
* gnu/packages/bioconductor.scm (r-birewire): Update to 3.36.0.

Change-Id: I334dc128bbc21fb4b7561ffbd467f8fa8c5655bb
2024-05-08 12:53:34 +02:00
Ricardo Wurmus
1e41a6c5a2
gnu: r-rqc: Update to 1.38.0.
* gnu/packages/bioconductor.scm (r-rqc): Update to 1.38.0.

Change-Id: Ic0d16636a1d8b895f90488a53e5fb12e926aab96
2024-05-08 12:53:34 +02:00
Ricardo Wurmus
41a7ae9ec3
gnu: r-quasr: Update to 1.44.0.
* gnu/packages/bioconductor.scm (r-quasr): Update to 1.44.0.
[propagated-inputs]: Add r-txdbmaker.

Change-Id: I694b838314fd3b272c2b1e54462c01b8d7aa3db9
2024-05-08 12:53:34 +02:00
Ricardo Wurmus
df7d5ec7c9
gnu: r-rhisat2: Update to 1.20.0.
* gnu/packages/bioconductor.scm (r-rhisat2): Update to 1.20.0.
[propagated-inputs]: Remove r-genomicfeatures; add r-txdbmaker.

Change-Id: I529eb7b14bed764ee4c99840261111aa464ebee4
2024-05-08 12:53:34 +02:00
Ricardo Wurmus
d7eb538f98
gnu: r-sgseq: Update to 1.38.0.
* gnu/packages/bioconductor.scm (r-sgseq): Update to 1.38.0.

Change-Id: I0cff4621eab565b54ee90e400d716505ce3546a4
2024-05-08 12:53:34 +02:00
Ricardo Wurmus
5f6b7c1f6d
gnu: r-rbowtie: Update to 1.44.0.
* gnu/packages/bioconductor.scm (r-rbowtie): Update to 1.44.0.

Change-Id: If72dcf98d1e0807a662769f075783f5ab771ffa6
2024-05-08 12:53:34 +02:00
Ricardo Wurmus
54bbc4fb55
gnu: r-iclusterplus: Update to 1.40.0.
* gnu/packages/bioconductor.scm (r-iclusterplus): Update to 1.40.0.

Change-Id: I50d3ad0f0eb16f9c9c164e0123bf7aad6ca88e8b
2024-05-08 12:53:34 +02:00
Ricardo Wurmus
4130ff3f13
gnu: r-biocfilecache: Update to 2.12.0.
* gnu/packages/bioconductor.scm (r-biocfilecache): Update to 2.12.0.

Change-Id: I43c6a01c27f5da53c1f92a4bb60e82021b503f24
2024-05-08 12:53:34 +02:00
Ricardo Wurmus
56a0297e64
gnu: r-arrmnormalization: Update to 1.44.0.
* gnu/packages/bioconductor.scm (r-arrmnormalization): Update to 1.44.0.

Change-Id: I6764fb65b0180eff4cae6fed0ef34e6cd5ed455a
2024-05-08 12:53:33 +02:00
Ricardo Wurmus
f3e16115ba
gnu: r-progeny: Update to 1.26.0.
* gnu/packages/bioconductor.scm (r-progeny): Update to 1.26.0.

Change-Id: Ie4aa637d7579bf5f966aa48469ee9774b9be72eb
2024-05-08 12:53:33 +02:00
Ricardo Wurmus
33270b8f5b
gnu: r-rbowtie2: Update to 2.10.0.
* gnu/packages/bioconductor.scm (r-rbowtie2): Update to 2.10.0.

Change-Id: Ia0479b81f8fafec85967c3f040921265672da0bc
2024-05-08 12:53:33 +02:00
Ricardo Wurmus
11fa847d63
gnu: r-zfpkm: Update to 1.26.0.
* gnu/packages/bioconductor.scm (r-zfpkm): Update to 1.26.0.

Change-Id: Iaedb6614daf04de16a4a7f1ac5d62e2a886627db
2024-05-08 12:53:33 +02:00
Ricardo Wurmus
9932e631b4
gnu: r-zinbwave: Update to 1.26.0.
* gnu/packages/bioconductor.scm (r-zinbwave): Update to 1.26.0.

Change-Id: I0ca075c1d53c8637f096c3d5d37b8af82e913d7a
2024-05-08 12:53:33 +02:00
Ricardo Wurmus
0612b39e4a
gnu: r-webbioc: Update to 1.76.0.
* gnu/packages/bioconductor.scm (r-webbioc): Update to 1.76.0.

Change-Id: I15d7018f71115f9105ab8bcb375d0085acda5e27
2024-05-08 12:53:33 +02:00
Ricardo Wurmus
269d807b8b
gnu: r-widgettools: Update to 1.82.0.
* gnu/packages/bioconductor.scm (r-widgettools): Update to 1.82.0.

Change-Id: Ifbf93eaef653f353c07198d3ab492db0d48c2a5d
2024-05-08 12:53:33 +02:00
Ricardo Wurmus
772e6bd326
gnu: r-wiggleplotr: Update to 1.28.0.
* gnu/packages/bioconductor.scm (r-wiggleplotr): Update to 1.28.0.

Change-Id: I812e2117c9fc082e665a2d257a14d6825bd2d983
2024-05-08 12:53:33 +02:00
Ricardo Wurmus
4290e9c021
gnu: r-wrench: Update to 1.22.0.
* gnu/packages/bioconductor.scm (r-wrench): Update to 1.22.0.

Change-Id: Ic5b0bc0ca63f073b121041bb3779cd6440dadf22
2024-05-08 12:53:33 +02:00
Ricardo Wurmus
ee4ba2b6d7
gnu: r-wppi: Update to 1.12.0.
* gnu/packages/bioconductor.scm (r-wppi): Update to 1.12.0.

Change-Id: Ifb378d20553d74bfca3a3311e1139f8bccc79a8b
2024-05-08 12:53:33 +02:00
Ricardo Wurmus
649def40b8
gnu: r-xcms: Update to 4.2.0.
* gnu/packages/bioconductor.scm (r-xcms): Update to 4.2.0.
[propagated-inputs]: Remove r-multtest, r-plyr, r-rann, and r-robustbase; add r-jsonlite
and r-metabocoreutils.

Change-Id: I8ebcedc2c4b7fc073589c474de8a3ea52071d278
2024-05-08 12:53:33 +02:00
Ricardo Wurmus
218d7093e5
gnu: r-massspecwavelet: Update to 1.70.0.
* gnu/packages/bioconductor.scm (r-massspecwavelet): Update to 1.70.0.

Change-Id: I0c19c85365065a5918c9236b8789798edbd69431
2024-05-08 12:53:33 +02:00
Ricardo Wurmus
3d31071378
gnu: r-roar: Update to 1.40.0.
* gnu/packages/bioconductor.scm (r-roar): Update to 1.40.0.

Change-Id: I86b612f9a1d4715d22a30fd6dc3c564f53400bdb
2024-05-08 12:53:33 +02:00
Ricardo Wurmus
bf13473e7f
gnu: r-yarn: Update to 1.30.0.
* gnu/packages/bioconductor.scm (r-yarn): Update to 1.30.0.

Change-Id: Ibc82dc44f5f1b61b5adefaee2a16de1e159ff865
2024-05-08 12:53:33 +02:00
Ricardo Wurmus
e873fea1c1
gnu: r-quantro: Update to 1.38.0.
* gnu/packages/bioconductor.scm (r-quantro): Update to 1.38.0.

Change-Id: Ib9b1c373c0f7820c1944d49e6cdc9e0da30c752c
2024-05-08 12:53:33 +02:00
Ricardo Wurmus
67584d7d08
gnu: r-gcrma: Update to 2.76.0.
* gnu/packages/bioconductor.scm (r-gcrma): Update to 2.76.0.

Change-Id: I224f243340bed970d72a8186d1f286d6e87a339b
2024-05-08 12:53:33 +02:00
Ricardo Wurmus
f6f96b1e5d
gnu: r-yapsa: Update to 1.30.0.
* gnu/packages/bioconductor.scm (r-yapsa): Update to 1.30.0.

Change-Id: Iaf62b6d599e1a7e3cd3255877a9faf9c3d8b28c1
2024-05-08 12:53:33 +02:00
Ricardo Wurmus
78ca6efb7d
gnu: r-somaticsignatures: Update to 2.40.0.
* gnu/packages/bioconductor.scm (r-somaticsignatures): Update to 2.40.0.

Change-Id: I599c3b6a521a93dfa056d3ea42a27906360f4e92
2024-05-08 12:53:33 +02:00
Ricardo Wurmus
3458fcb7e0
gnu: r-gtrellis: Update to 1.36.0.
* gnu/packages/bioconductor.scm (r-gtrellis): Update to 1.36.0.

Change-Id: I3d0e77d8406b71adfcce754c0df5d82fbfa54d29
2024-05-08 12:53:33 +02:00
Ricardo Wurmus
e03461e6ab
gnu: r-yamss: Update to 1.30.0.
* gnu/packages/bioconductor.scm (r-yamss): Update to 1.30.0.

Change-Id: Id552217ad9a7a8273e38face0f016c410b6d2f25
2024-05-08 12:53:33 +02:00
Ricardo Wurmus
1815859a6b
gnu: r-ebimage: Update to 4.46.0.
* gnu/packages/bioconductor.scm (r-ebimage): Update to 4.46.0.

Change-Id: I18b62127bbd91d4c443a29a376506ffb95bdf74f
2024-05-08 12:53:33 +02:00
Ricardo Wurmus
5b0edd7546
gnu: r-aucell: Update to 1.26.0.
* gnu/packages/bioconductor.scm (r-aucell): Update to 1.26.0.
[propagated-inputs]: Remove r-shiny.

Change-Id: I258ef1c0dbe0b3039cccc52b45bcd279e13448eb
2024-05-08 12:53:33 +02:00
Ricardo Wurmus
78668dc53f
gnu: r-allelicimbalance: Update to 1.42.0.
* gnu/packages/bioconductor.scm (r-allelicimbalance): Update to 1.42.0.

Change-Id: I2317a273e56cec77dfc2904a9f4b394954b4452c
2024-05-08 12:53:33 +02:00
Ricardo Wurmus
69baa29212
gnu: r-annotationtools: Update to 1.78.0.
* gnu/packages/bioconductor.scm (r-annotationtools): Update to 1.78.0.

Change-Id: I03cfc05951d2385d129299857ab33dca14b9a09c
2024-05-08 12:53:32 +02:00
Ricardo Wurmus
af398adbe3
gnu: r-gofuncr: Update to 1.24.0.
* gnu/packages/bioconductor.scm (r-gofuncr): Update to 1.24.0.

Change-Id: I3a9519ce281638bded1674efdcedee2792653edd
2024-05-08 12:53:32 +02:00
Ricardo Wurmus
f5d18100fe
gnu: r-atacseqqc: Update to 1.28.0.
* gnu/packages/bioconductor.scm (r-atacseqqc): Update to 1.28.0.
[propagated-inputs]: Add r-biocparallel.

Change-Id: Ie8b4dfaeb8d2dace4222edcc453206c92038ccf3
2024-05-08 12:53:32 +02:00
Ricardo Wurmus
c05269694a
gnu: r-genomicscores: Update to 2.16.0.
* gnu/packages/bioconductor.scm (r-genomicscores): Update to 2.16.0.

Change-Id: I5e16fcbdb0539d1549703c5613637a45dd394f19
2024-05-08 12:53:32 +02:00
Ricardo Wurmus
a0f8d68eb9
gnu: r-motifstack: Update to 1.48.0.
* gnu/packages/bioconductor.scm (r-motifstack): Update to 1.48.0.

Change-Id: I3f5753d9c6b6d80f813745ea784b50d805ea9a5b
2024-05-08 12:53:32 +02:00
Ricardo Wurmus
820be3c706
gnu: r-motifbreakr: Update to 2.18.0.
* gnu/packages/bioconductor.scm (r-motifbreakr): Update to 2.18.0.
[propagated-inputs]: Add r-pwalign.

Change-Id: If6d1a32ef6c413a2c5f9e1b9facb86535474f2f0
2024-05-08 12:53:32 +02:00