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48198 Commits

Author SHA1 Message Date
Ricardo Wurmus
c10bef9bd3
gnu: r-caret: Update to 6.0-86. 
* gnu/packages/cran.scm (r-caret): Update to 6.0-86.
[native-inputs]: Add r-knitr.
 2020-03-24 11:06:00 +01:00
Ricardo Wurmus
1e40a27465
gnu: r-batchtools: Update to 0.9.13. 
* gnu/packages/cran.scm (r-batchtools): Update to 0.9.13.
[native-inputs]: Add r-knitr.
 2020-03-24 11:06:00 +01:00
Ricardo Wurmus
6005efa40f
gnu: r-mcmc: Update to 0.9-7. 
* gnu/packages/cran.scm (r-mcmc): Update to 0.9-7.
 2020-03-24 11:06:00 +01:00
Ricardo Wurmus
d3836473de
gnu: r-proc: Update to 1.16.2. 
* gnu/packages/cran.scm (r-proc): Update to 1.16.2.
 2020-03-24 11:06:00 +01:00
Ricardo Wurmus
c5036a4f39
gnu: r-xgboost: Update to 1.0.0.1. 
* gnu/packages/cran.scm (r-xgboost): Update to 1.0.0.1.
[native-inputs]: Add r-knitr.
 2020-03-24 11:06:00 +01:00
Ricardo Wurmus
2f445f0da3
gnu: r-radiant-data: Update to 1.3.4. 
* gnu/packages/cran.scm (r-radiant-data): Update to 1.3.4.
[propagated-inputs]: Remove r-gridextra; add r-mass, r-patchwork, and
r-randomizr.
 2020-03-24 11:06:00 +01:00
Ricardo Wurmus
ff248f41cb
gnu: r-patchwork: Update to 1.0.0. 
* gnu/packages/cran.scm (r-patchwork): Update to 1.0.0.
[source]: Fetch from CRAN.
[native-inputs]: Add r-knitr.
 2020-03-24 11:06:00 +01:00
Ricardo Wurmus
d8dc2a7c1e
gnu: r-igraph: Update to 1.2.5. 
* gnu/packages/graph.scm (r-igraph): Update to 1.2.5.
 2020-03-24 11:06:00 +01:00
Ricardo Wurmus
f7a21df523
gnu: r-robustbase: Update to 0.93-6. 
* gnu/packages/statistics.scm (r-robustbase): Update to 0.93-6.
 2020-03-24 11:06:00 +01:00
Ricardo Wurmus
7e349066e6
gnu: r-hmisc: Update to 4.4-0. 
* gnu/packages/statistics.scm (r-hmisc): Update to 4.4-0.
 2020-03-24 11:06:00 +01:00
Ricardo Wurmus
670cbe2c3c
gnu: r-pkgmaker: Update to 0.31.1. 
* gnu/packages/statistics.scm (r-pkgmaker): Update to 0.31.1.
 2020-03-24 11:06:00 +01:00
Ricardo Wurmus
d16a4d1f96
gnu: r-dt: Update to 0.13. 
* gnu/packages/statistics.scm (r-dt): Update to 0.13.
[native-inputs]: Add r-knitr.
 2020-03-24 11:05:59 +01:00
Ricardo Wurmus
f871696911
gnu: r-locfit: Update to 1.5-9.2. 
* gnu/packages/statistics.scm (r-locfit): Update to 1.5-9.2.
 2020-03-24 11:05:59 +01:00
Ricardo Wurmus
e0d6a7da74
gnu: Add r-randomizr. 
* gnu/packages/cran.scm (r-randomizr): New variable.
 2020-03-24 11:05:59 +01:00
Guillaume Le Vaillant
47a2306415
gnu: sbcl: Increase maximum heap size to 2Gb. 
* gnu/packages/lisp.scm (sbcl)[arguments]: Add the "--dynamic-space-size=2Gb"
  option in the build phase.
 2020-03-24 09:31:43 +01:00
Michael Rohleder
0f96fd6454
gnu: dialog: Update to 1.3-20200228. 
* gnu/packages/ncurses.scm (dialog): Update to 1.3-20200228.

Signed-off-by: Leo Famulari <leo@famulari.name>
 2020-03-23 21:17:55 -04:00
Leo Famulari
aae5f89db0
gnu: Git: Update to 2.26.0. 
* gnu/packages/version-control.scm (git): Update to 2.26.0.
[arguments]: Adjust the 'install-credential-netrc' phase to upstream changes.
 2020-03-23 21:17:46 -04:00
Mathieu Othacehe
acd595c237
Revert "gnu: youtube-dl: Add 'ffmpeg' as input." 
This reverts commit 4233e74b39635d5ef4dde204ecc26dcc894d9467.
 2020-03-23 21:51:25 +01:00
Leo Famulari
a11237e40a
gnu: Mutt: Update to 1.13.4. 
* gnu/packages/mail.scm (mutt): Update to 1.13.4.
[source]: Prefer HTTPS URL and replace FTP URL with HTTP.
 2020-03-23 15:53:11 -04:00
Alexandros Theodotou
0a6f68982b
gnu: sord: Add pcre to inputs. 
* gnu/packages/rdf.scm (sord)[inputs]: Add pcre needed for sord_validate.
 2020-03-23 20:48:49 +01:00
Brice Waegeneire
7884fc434f
gnu: youtube-dl: Add zsh completion. 
* gnu/packages/video.scm (youtube-dl)[arguments]: Add phase
install-completion.

Signed-off-by: Mathieu Othacehe <m.othacehe@gmail.com>
 2020-03-23 19:02:46 +01:00
Brice Waegeneire
4233e74b39
gnu: youtube-dl: Add 'ffmpeg' as input. 
* gnu/packages/video.scm (youtube-dl)[arguments]: Add phase
wrap-executable.
[inputs]: Add ffmpeg.

Signed-off-by: Mathieu Othacehe <m.othacehe@gmail.com>
 2020-03-23 19:02:44 +01:00
Maxim Cournoyer
f2c698bd3e
gnu: emacs-lua-mode: Update to 20191204. 
* (emacs-lua-mode): Update to 20191204.
 2020-03-23 13:49:39 -04:00
Maxim Cournoyer
09c09c4c7c
gnu: emacs-ert-runner: Update to 0.8.0. 
* (emacs-ert-runner): Update to 0.8.0.
 2020-03-23 13:49:38 -04:00
Maxim Cournoyer
80168c4b5b
gnu: emacs-dash: Update to 2.17.0. 
* (emacs-dash): Update to 2.17.0.
 2020-03-23 13:49:38 -04:00
Tobias Geerinckx-Rice
5490b2c733
gnu: parallel: Update to 20200322. 
* gnu/packages/parallel.scm (parallel): Update to 20200322.
 2020-03-23 18:35:27 +01:00
Tobias Geerinckx-Rice
c2d468a111
gnu: extremetuxracer: Update to 0.8.0. 
* gnu/packages/games.scm (extremetuxracer): Update to 0.8.0.
 2020-03-23 18:35:27 +01:00
Alexandros Theodotou
d3e7282ec3
gnu: Add zlfo. 
* gnu/packages/music.scm (zlfo): New variable.

Signed-off-by: Jakub Kądziołka <kuba@kadziolka.net>
 2020-03-23 15:39:02 +01:00
Alexandros Theodotou
360ebe50b5
gnu: Add ztoolkit-rsvg. 
* gnu/packages/audio.scm (ztoolkit-rsvg): New variable.

Signed-off-by: Jakub Kądziołka <kuba@kadziolka.net> [with modifications]
 2020-03-23 15:39:01 +01:00
Alexandros Theodotou
2f4faccc6f
gnu: Add ztoolkit. 
* gnu/packages/audio.scm (ztoolkit): New variable.

Signed-off-by: Jakub Kądziołka <kuba@kadziolka.net>
 2020-03-23 15:39:00 +01:00
Roel Janssen
7ff6395100
gnu: Add circos. 
* gnu/local.mk: Register circos-remove-findbin.patch.
* gnu/packages/patches/circos-remove-findbin.patch: New file.
* gnu/packages/perl.scm: New variable.
 2020-03-23 11:42:36 +01:00
Alexandros Theodotou
591faabd8c
gnu: Add python-gcovr. 
* gnu/packages/python-xyz.scm (python-gcovr): New variable.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
 2020-03-23 10:48:18 +01:00
Alexandros Theodotou
670da39888
gnu: Add lv2toweb. 
* gnu/packages/audio.scm (lv2toweb): New variable.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
 2020-03-23 10:48:18 +01:00
Leo Famulari
1eb27d5cae
Re-order the armhf linux-libre kernel packages to fix the build. 
This is a followup to commit 37f8c50cdc2e99189c74999319f3a1854d419546.

Previously, building Guix crashed like this:

------
In ice-9/eval.scm:
    619:8  4 (_ #f)
   626:19  3 (_ #<directory (gnu packages linux) 7fcf3e526c80>)
    159:9  2 (_ #<directory (gnu packages linux) 7fcf3e526c80>)
   223:20  1 (proc #<directory (gnu packages linux) 7fcf3e526c80>)
In unknown file:
           0 (%resolve-variable (7 . linux-libre-arm-generic) #<directory (gnu packages linux) 7fcf3e526c80>)

ERROR: In procedure %resolve-variable:
error: linux-libre-arm-generic: unbound variable
------

* gnu/packages/linux.scm (linux-libre-arm-veyron): Move after
linux-libre-arm-generic.
 2020-03-23 01:46:48 -04:00
Vagrant Cascadian
058e96c59f
gnu: Add linux-libre-arm64-generic. 
* gnu/packages/linux (linux-libre-arm64-generic): New variable.
 2020-03-22 20:55:42 -07:00
Vagrant Cascadian
37f8c50cdc
gnu: linux-libre-arm-veyron: Deprecate package. 
* gnu/packages/linux (linux-libre-arm-veyron): Mark as deprecated package.
  (kernel-config-veyron): Remove obsolete function.
* gnu/system/examples/asus-c201.tmpl: Update to use linux-libre-arm-generic.
* gnu/packages/aux-files/linux-libre/5.4-arm-veyron.conf: Delete file.
* Makefile.am (AUX_FILES): Update accordingly.
 2020-03-22 20:55:37 -07:00
Maxim Cournoyer
4ef89d884d
gnu: emacs-elpy: Update to 1.32.0. 
* gnu/packages/emacs-xyz.scm (emacs-elpy): Update to 1.32.0.
[phases]{fake-virtualenv}: Rename to 'do-not-use-virtualenv.  Use the new
ELPY_TEST_DONT_USE_VIRTUALENV environment variable to skip tests using
virtualenv, and set the elpy-rpc-virtualenv-path default value to 'system so
that a virtualenv is not needed.
[native-inputs]: Move the Python dependencies to...
[propagated] ...here.  This is so that Elpy doesn't nag users with fetching
those from PyPI.   Add python-rope.

Fixes <https://bugs.gnu.org/40079>.
Reported-by: sirgazil <sirgazil@zoho.com>
 2020-03-22 21:17:39 -04:00
Maxim Cournoyer
4cbd60698d
gnu: emacs: Patch references to /bin/sh. 
When attempting to run ert-runner in the build side environment where /bin/sh
doesn't exist as part of the emacs-elpy test suite, Emacs was throwing the
error "Searching for program: No such file or directory, /bin/sh".  This is
because the default shell when SHELL is not set was "/bin/sh", as can be seen
in callproc.c:

  sh = getenv ("SHELL");
  Vshell_file_name = build_string (sh ? sh : "/bin/sh");

Thus, patch the occurrences of "/bin/sh" in the source files of Emacs to refer
to their correct store location.

* gnu/packages/emacs.scm (emacs)[phases]{patch-program-file-names}: Add phase.
 2020-03-22 21:17:39 -04:00
Maxim Cournoyer
393c5e6928
gnu: emacs-minimal: Install the custom site-start file. 
This makes the EMACS-MINIMAL package more generally useful, by adding support
to load autoload definitions.  Note that this doesn't negatively impact the
performance of the emacs-build-system, because at that time the --quick option
is used, which disables loading site-start.el (which is the one calling
GUIX-EMACS-AUTOLOAD-PACKAGES).

* gnu/packages/emacs.scm (emacs-minimal)[phases]: Do not delete the
'install-site-start phase.
[inputs]: Add the emacs/guix-emacs.el auxiliary file.
 2020-03-22 21:17:39 -04:00
Maxim Cournoyer
3bd3a6257f
gnu: emacs: Re-indent. 
* gnu/packages/emacs.scm (emacs): Fix indentation.
 2020-03-22 21:17:39 -04:00
Maxim Cournoyer
ffaec30702
gnu: emacs: Byte compile the site-lisp directory, without coupling. 
This re-instates what the previously reverted commit did, but without adding
a dependency on the (guix build emacs-utils) module.

* gnu/packages/emacs.scm (emacs)[phases]{install-site-start}: Define a
EMACS-BYTE-COMPILE-DIRECTORY procedure, and use it.
 2020-03-22 21:17:38 -04:00
Maxim Cournoyer
d0a64567f1
Revert "gnu: emacs: Byte compile the site-lisp directory." 
This reverts commit 4714d0fc1a96eb6d421b64b0b585fe8043dcd07b.

Rational: Having to rebuild Emacs every time (guix build emacs-utils) changes
is not great.
 2020-03-22 21:17:38 -04:00
Maxim Cournoyer
155f9afde5
gnu: emacs: Remove obsolete FIXME comment. 
* gnu/packages/aux-files/emacs/guix-emacs.el: Remove comment.
 2020-03-22 21:17:38 -04:00
Kei Kebreau
6607aad53c
gnu: wxmaxima: Update to 20.03.1. 
* gnu/packages/maths.scm (wxmaxima): Update to 20.03.1.
 2020-03-22 19:22:42 -04:00
Alexandru-Sergiu Marton
d4842a7c47
gnu: i3-gaps: Update to 4.18. 
* gnu/packages/wm.scm (i3-gaps): Update to 1.18.

Signed-off-by: Leo Famulari <leo@famulari.name>
 2020-03-22 17:21:33 -04:00
Leo Famulari
268efd97c2
gnu: Remove qemu-minimal-2.10. 
* gnu/packages/virtualization.scm (qemu-minimal-2.10): Remove variable.
* gnu/packages/debug.scm (qemu-for-american-fuzzy-lop): New variable.
(american-fuzzy-lop)[inputs]: Remove custom-qemu and add
qemu-for-american-fuzzy-lop.
[arguments]: Adjust reference to QEMU in the 'install-qemu' phase.
 2020-03-22 14:26:31 -04:00
Leo Famulari
c9164d3098
gnu: Prefix licenses in (gnu packages debug). 
* gnu/packages/debug.scm: Add a license prefix.
 2020-03-22 14:26:31 -04:00
Guillaume Le Vaillant
e6a0cd9aa1
gnu: electron-cash: Update to 4.0.13. 
This package was inheriting from electrum, but as now almost all the fields
have differences, let's make these two packages independent from each other.

* gnu/packages/finance.scm (electron-cash): Update to 4.0.13.
  [inputs]: Add libevent, openssl, python-cython, python-hidapi,
  python-keepkey, python-stem, python-trezor, qtsvg and zlib.
  [arguments]: Add a wrap-qt phase allowing qtsvg to be found at runtime to
  show SVG icons correctly.
 2020-03-22 19:03:52 +01:00
Alex Griffin
9720894cc8
gnu: gnome-shell-extension-paperwm: Update to 36.0. 
* gnu/packages/gnome-xyz.scm (gnome-shell-extension-paperwm): Update to 36.0.
 2020-03-22 11:24:25 -05:00
Guillaume Le Vaillant
aaa8893715
gnu: qbittorrent: Fix icons not showing in GUI. 
* gnu/packages/bittorrent.scm (qbittorrent)[arguments]: Add a wrap-qt phase.
 2020-03-22 17:11:14 +01:00