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376 Commits

Author SHA1 Message Date
Ricardo Wurmus
beaa026aa7
gnu: r: Fix more reproducibility problems. 
* gnu/packages/statistics.scm (r)[arguments]: Patch locations in the
build system that need special treatment for reproducibility.
 2017-03-08 12:32:49 +01:00
Ricardo Wurmus
745c687be3
gnu: r: Fix syntax for INSTALL_OPTS. 
This is a follow-up to commit 4621acfd82.

* gnu/packages/statistics.scm (r)[arguments]: Ensure that
"--built-timestamp" appears on the same line as the other INSTALL_OPTS.
 2017-03-08 12:32:49 +01:00
Marius Bakke
6cb7477699
gnu: python-statsmodels: Update to 0.8.0. 
* gnu/packages/statistics.scm (python-statsmodels, python2-statsmodels):
Update to 0.8.0.
[source]: Use 'pypi-uri'.
[arguments]: Add more files to matplotlib backend substitution.
* gnu/packages/patches/python-statsmodels-fix-tests.patch: Drop test that
fails with numpy 1.12. Remove previous contents.
 2017-03-06 23:24:11 +01:00
Tobias Geerinckx-Rice
9c53993fb2
gnu: r-gtable: Remove duplicate definition. 
* gnu/packages/statistics.scm (r-gtable): Remove shadowed 0.1.2 version.
[home-page]: Use HTTPS.
[synopsis, description]: Use those of the removed version.
 2017-03-03 00:59:30 +01:00
Tobias Geerinckx-Rice
fe08b1a759
gnu: r-codetools: Remove duplicate definition. 
* gnu/packages/statistics.scm (r-codetools): Remove shadowed 0.2-14 version.
[home-page]: Use HTTPS.
 2017-03-03 00:59:30 +01:00
Ricardo Wurmus
4621acfd82
gnu: r: Build default packages reproducibly. 
This is a follow-up to commit de643f0c15.

* gnu/packages/statistics.scm (r)[arguments]: Set the built timestamp for core
packages to the epoch; add phase "build-recommended-packages-reproducibly".
 2017-02-07 20:04:49 +01:00
Raoul Jean Pierre Bonnal
c6dced88f2
gnu: Add r-rann. 
* gnu/packages/statistics.scm (r-rann): New variable.

Signed-off-by: Kei Kebreau <kei@openmailbox.org>
 2017-02-03 14:21:22 -05:00
Raoul Jean Pierre Bonnal
37337699d7
gnu: Add r-randomforest. 
* gnu/packages/statistics.scm (r-randomforest): New variable.

Signed-off-by: Kei Kebreau <kei@openmailbox.org>
 2017-02-03 14:12:51 -05:00
Ben Woodcroft
e4b6c565be
gnu: r-ggplot2: Add r-svglite to propagated-inputs. 
* gnu/packages/statistics.scm (r-ggplot2)[propagated-inputs]: Add
r-svglite.
 2017-01-23 21:23:33 +10:00
Raoul Jean Pierre Bonnal
e431eb670d
gnu: Add r-fastica. 
* gnu/packages/statistics.scm (r-fastica): New variable.
 2017-01-20 15:38:03 +01:00
Raoul Jean Pierre Bonnal
793f2edbbc
gnu: Add r-lars. 
* gnu/packages/statistics.scm (r-lars): New variable.
 2017-01-20 15:38:03 +01:00
Raoul Jean Pierre Bonnal
efba686c80
gnu: Add r-mixtools. 
* gnu/packages/statistics.scm (r-mixtools): New variable.
 2017-01-20 15:38:03 +01:00
Raoul Jean Pierre Bonnal
c6017f7222
gnu: Add r-cowplot. 
* gnu/packages/statistics.scm (r-cowplot): New variable.
 2017-01-20 15:38:02 +01:00
Ricardo Wurmus
26a281ef27
gnu: Add r-compquadform. 
* gnu/packages/statistics.scm (r-compquadform): New variable.
 2017-01-17 21:46:48 +01:00
Ricardo Wurmus
5f764dd7ff
gnu: Add r-fivethirtyeight. 
* gnu/packages/statistics.scm (r-fivethirtyeight): New variable.
 2017-01-17 21:46:47 +01:00
Roel Janssen
ac1f1e4e02
gnu: Add r-ggthemes. 
* gnu/packages/statistics.scm (r-ggthemes):  New variable.
 2017-01-12 15:14:04 +01:00
Roel Janssen
7b030c9f9b
gnu: r-plotrix: Update to 3.6-4. 
* gnu/packages/statistics.scm (r-plotrix): Update to 3.6-4.
 2017-01-03 13:51:05 +01:00
Roel Janssen
0c74399d98
gnu: r-git2r: Update to 0.18.0. 
* gnu/packages/statistics.scm (r-git2r): Update to 0.18.0.
 2017-01-03 13:49:18 +01:00
Roel Janssen
807db78fc9
gnu: r-hmisc: Update to 4.0-2. 
* gnu/packages/statistics.scm (r-hmisc): Update to 4.0-2.
  [propagated-inputs]: Add r-base64enc.
 2017-01-03 13:46:14 +01:00
Roel Janssen
437d064dc5
gnu: r-openssl: Update to 0.9.6. 
* gnu/packages/statistics.scm (r-openssl): Update to 0.9.6.
 2017-01-03 13:39:51 +01:00
Roel Janssen
da13738ef0
gnu: r-ggplot2: Update to 2.2.1. 
* gnu/packages/statistics.scm (r-ggplot2): Update to 2.2.1.
 2017-01-03 13:34:53 +01:00
Ricardo Wurmus
35bb2ff88a
gnu: r-rsqlite: Update to 1.1-1. 
* gnu/packages/statistics.scm (r-rsqlite): Update to 1.1-1.
[propagated-inputs]: Add r-bh, r-memoise, r-plogr, and r-rcpp.
 2016-12-29 21:49:13 +01:00
Ricardo Wurmus
28c041afe8
gnu: Add r-plogr. 
* gnu/packages/statistics.scm (r-plogr): New variable.
 2016-12-29 21:49:13 +01:00
Ricardo Wurmus
ab607061cd
gnu: r-hmisc: Update to 4.0-1. 
* gnu/packages/statistics.scm (r-hmisc): Update to 4.0-1.
[propagated-inputs]: Remove r-cluster, r-foreign, r-lattice, r-nnet, and
r-rpart; add r-base64.
 2016-12-29 21:49:12 +01:00
Ricardo Wurmus
0811f0f9d2
gnu: Add r-base64. 
* gnu/packages/statistics.scm (r-base64): New variable.
 2016-12-29 21:49:12 +01:00
Ricardo Wurmus
ca380feb37
gnu: r-rmarkdown: Update to 1.3. 
* gnu/packages/statistics.scm (r-rmarkdown): Update to 1.3.
[propagated-inputs]: Remove r-tibble; add r-rprojroot.
 2016-12-29 21:49:12 +01:00
Ricardo Wurmus
046e27e3f5
gnu: Add r-rprojroot. 
* gnu/packages/statistics.scm (r-rprojroot): New variable.
 2016-12-29 21:49:12 +01:00
Ricardo Wurmus
a8e45b3240
gnu: r-rcpparmadillo: Update to 0.7.600.1.0. 
* gnu/packages/statistics.scm (r-rcpparmadillo): Update to 0.7.600.1.0.
* gnu/packages/maths.scm (armadillo-for-rcpparmadillo): Update to
7.600.1.
 2016-12-29 21:49:12 +01:00
Ricardo Wurmus
c729d3dc0e
gnu: r-zoo: Update to 1.7-14. 
* gnu/packages/statistics.scm (r-zoo): Update to 1.7-14.
[propagated-inputs]: Remove r-lattice.
 2016-12-29 21:49:11 +01:00
Ricardo Wurmus
53941eb7a5
gnu: r-fastcluster: Update to 1.1.22. 
* gnu/packages/statistics.scm (r-fastcluster): Update to 1.1.22.
 2016-12-29 21:49:11 +01:00
Ricardo Wurmus
3a181dc46e
gnu: r-plotly: Update to 4.5.6. 
* gnu/packages/statistics.scm (r-plotly): Update to 4.5.6.
 2016-12-29 21:49:11 +01:00
Ricardo Wurmus
54aa6eb6ee
gnu: r-r-rsp: Update to 0.40.0. 
* gnu/packages/statistics.scm (r-r-rsp): Update to 0.40.0.
 2016-12-29 21:49:11 +01:00
Ricardo Wurmus
1a44753b95
gnu: r-r-utils: Update to 2.5.0. 
* gnu/packages/statistics.scm (r-r-utils): Update to 2.5.0.
 2016-12-29 21:49:11 +01:00
Ricardo Wurmus
62350c0797
gnu: r-coda: Update to 0.19-1. 
* gnu/packages/statistics.scm (r-coda): Update to 0.19-1.
[propagated-inputs]: Remove r-lattice.
 2016-12-29 21:49:11 +01:00
Ricardo Wurmus
3607afbe4c
gnu: r-chron: Update to 2.3-48. 
* gnu/packages/statistics.scm (r-chron): Update to 2.3-48.
 2016-12-29 21:49:11 +01:00
Ricardo Wurmus
eaec5506ad
gnu: r-knitr: Update to 1.15.1. 
* gnu/packages/statistics.scm (r-knitr): Update to 1.15.1.
[propagated-inputs]: Remove r-formatr.
 2016-12-29 21:49:10 +01:00
Ricardo Wurmus
fd7810d323
gnu: r-bh: Update to 1.62.0-1. 
* gnu/packages/statistics.scm (r-bh): Update to 1.62.0-1.
 2016-12-29 21:49:10 +01:00
Ricardo Wurmus
dd4ae2950a
gnu: r-svglite: Update to 1.2.0. 
* gnu/packages/statistics.scm (r-svglite): Update to 1.2.0.
 2016-12-29 21:49:10 +01:00
Ricardo Wurmus
48a87bbe3b
gnu: r-gdtools: Update to 0.1.3. 
* gnu/packages/statistics.scm (r-gdtools): Update to 0.1.3.
 2016-12-29 21:49:10 +01:00
Ricardo Wurmus
ab01f1cdb1
gnu: r-ggplot2: Update to 2.2.0. 
* gnu/packages/statistics.scm (r-ggplot2): Update to 2.2.0.
[propagated-inputs]: Remove r-proto and r-svglite; add r-lazyeval and
r-tibble.
 2016-12-29 21:49:10 +01:00
Ricardo Wurmus
b94b03b7fa
gnu: r-scales: Update to 0.4.1. 
* gnu/packages/statistics.scm (r-scales): Update to 0.4.1.
 2016-12-29 21:49:10 +01:00
Ricardo Wurmus
8a8fc31c6a
gnu: r-mgcv: Update to 1.8-16. 
* gnu/packages/statistics.scm (r-mgcv): Update to 1.8-16.
 2016-12-29 21:49:10 +01:00
Ricardo Wurmus
2a1c1b8074
gnu: r-hms: Update to 0.3. 
* gnu/packages/statistics.scm (r-hms): Update to 0.3.
 2016-12-29 21:49:09 +01:00
Ricardo Wurmus
85455a08f4
gnu: r-git2r: Update to 0.17.0. 
* gnu/packages/statistics.scm (r-git2r): Update to 0.17.0.
 2016-12-29 21:49:09 +01:00
Ricardo Wurmus
abb6f0540e
gnu: r-ade4: Update to 1.7-5 
* gnu/packages/statistics.scm (r-ade4): Update to 1.7-5.
 2016-12-29 21:49:09 +01:00
Ricardo Wurmus
db1b38af4e
gnu: r-xml: Update to 3.98-1.5. 
* gnu/packages/statistics.scm (r-xml): Update to 3.98-1.5.
[propagated-inputs]: Remove r-rcurl.
 2016-12-29 21:49:09 +01:00
Ricardo Wurmus
773a50114c
gnu: r-sparsem: Update to 1.74. 
* gnu/packages/statistics.scm (r-sparsem): Update to 1.74.
 2016-12-29 21:49:09 +01:00
Ricardo Wurmus
76ce7c3767
gnu: r-data-table: Update to 1.10.0. 
* gnu/packages/statistics.scm (r-data-table): Update to 1.10.0.
[propagated-inputs]: Remove r-chron.
 2016-12-29 21:49:09 +01:00
Ricardo Wurmus
58b93ad5d9
gnu: r-estimability: Update to 1.2. 
* gnu/packages/statistics.scm (r-estimability): Update to 1.2.
 2016-12-29 21:49:08 +01:00
Ricardo Wurmus
eebac90aa8
gnu: r-rcpp: Update to 0.12.8. 
* gnu/packages/statistics.scm (r-rcpp): Update to 0.12.8.
 2016-12-29 21:49:08 +01:00