Fixes <https://bugs.gnu.org/38836>.
Reported by Ricardo Wurmus <rekado@elephly.net>.
* guix/import/cran.scm (bioconductor-packages-list): Close the port
returned by 'http-fetch/cached'.
(fetch-description): Likewise.
Fixes <https://bugs.gnu.org/20145>.
* guix/build/download.scm (%tls-ports, register-tls-record-port): Remove.
(tls-wrap): Remove call to 'register-tls-record-port'. Return a custom
binary input/output port instead. This is a backport of what Guile
2.2's (web client) module has been doing.
(close-connection): Define as an alias for 'close-port'.
* guix/http-client.scm (http-fetch): Remove #:keep-alive? parameter,
which was ignored and unused.
Pass #:keep-alive? #f to 'http-get'.
* guix/lint.scm (probe-uri): Use 'close-port' instead of 'close-connection'.
* guix/scripts/substitute.scm (http-multiple-get): Likewise.
This fixes the bug which prevented uglify-js from being defined properly, and
cascaded back to all Common Lisp packages.
* gnu/packages/bioinformatics.scm: Replace javascript module with lisp-xyz.
* gnu/packages/cran.scm: Use lisp-xyz module.
* gnu/packages/javascript.scm (uglify-js): Move from here...
* gnu/packages/lisp-xyz.scm: ... To here.
* gnu/packages/web.scm: Replace javascript module with lisp-xyz.
* guix/build-system/minify.scm: Find uglify-js in the lisp-xyz module.
Fixes <https://bugs.gnu.org/38709>.
Reported by Valentin Ignatev <valentignatev@gmail.com>.
* guix/import/crate.scm (crate-recursive-import): Add optional 'version'
parameter and honor it.
* guix/scripts/import/crate.scm (guix-import-crate): Pass VERSION as 2nd
argument to 'crate-recursive-import'.
* guix/store.scm (current-target-system): New exported monadic procedure.
* guix/profiles.scm (profile-derivation): Set target at bind time using the
above procedure.
* guix/scripts/pack.scm (guix-pack)[manifest-from-args]: Remove
'provenance', and add 'with-provenance' procedure. Wrap 'cond' form in
'with-provenance'.
Fixes <https://bugs.gnu.org/38673>.
Reported by zimoun <zimon.toutoune@gmail.com>.
* guix/describe.scm (manifest-entry-with-provenance): New procedure.
* guix/scripts/package.scm (process-actions): Use it when FILES is
non-empty.
When the qt-build-system was created, based on the cmake-build-system,
some references to cmake have been missed to be changed.
* guix/build-system/qt.scm (qt-build, qt-cross-build)[modules]:
Use qt-build-system, not cmake-build-system. [builder]: Call qt-build,
not cmake-build.
Coauthored-by: Ludovic Courtès <ludo@gnu.org>
* guix/gexp.scm (gexp->file): Add system and target arguments and pass them to
gexp->derivation and load-path-expression calls,
(scheme-file-compiler): adapt accordingly to pass system and target arguments.
Until now, 'guix system delete-generations' would ignore OPTS; for
example, it would not enable #:print-extended-build-trace? & co.,
leading to suboptimal output.
* guix/scripts/system.scm (process-command)[with-store*]: New macro.
Use it for 'delete-generations', 'switch-generation', and 'roll-back'.
This allows callers to distinguish between signature verification
failure and missing key.
* guix/gnupg.scm (gnupg-receive-keys): Return true on success.
(gnupg-verify*): Check return value of 'gnupg-receive-keys'. Return two
values, the first one being a symbol.
* guix/upstream.scm (download-tarball): Get the two return values of
'gnupg-verify*', and match on the first one.
* gnu/packages/bash.scm (download-patches): Check the first return value
of 'gnupg-verify*'.
This halves the run time on a large number of subsequent 'gnupg-verify'
calls.
* guix/gnupg.scm (sigid-rx, goodsig-rx, validsig-rx, expkeysig-rx)
(errsig-rx): New variables, lifted from...
(gnupg-verify)[status-line->sexp]: ... here.
Until then, 'gnupg-status-missing-key?' would return a key id. Its
user, 'gnupg-verify*', would then fetch a key with that ID from key
servers, thus possibly the wrong key (due to key ID collisions). If it
did fetch the wrong key, the effect would be a signature verification
failure down the path--e.g., in "guix refresh -u".
* guix/gnupg.scm (gnupg-verify)[maybe-fingerprint]: New procedure.
[status-line->sexp](errsig-rx): Add parenthetical expression at the end.
Fetch it and add it to the 'signature-error' sexp.
(gnupg-status-missing-key?): Match the whole 'signature-error' sexp and
return preferably the fingerprint rather than KEY-ID.
(gnupg-receive-keys): Rename 'key-id' parameter to 'fingerprint/key-id'.
Returning a key ID was inconsequential because the only user of
'gnupg-status-good-signature?', (guix upstream) (via 'gnupg-verify*'),
would not check the return value as long as it's true.
* guix/gnupg.scm (gnupg-status-good-signature?): Return a
fingerprint/user pair instead of key-id/user.
(gnupg-verify*): Mention it in docstring.
This is a one-character follow-up to
356a79becc
Reported by Jonathan Brielmaier <jonathan.brielmaier@web.de>.
* guix/swh.scm(<origin>): Remove a slash from example URI witin a comment.
When using the archival linter, git origins already in the archive where
not recognized due to an API change and where repeatedly asked for archival.
This is fixed here.
* guix/swh.scm (lookup-origin): Fix API URI for getting origin.
(<origin>): Fix comment with API URI example.
* guix/base64.scm: Remove #:use-module clauses for (rnrs) and (srfi
srfi-13). Add other #:use-module clauses.
(fxbit-field): Define as an alias for 'bit-field.
(fx=?, fx+, mod): New aliases.
(assert): New macro.
* guix/scripts/challenge.scm (call-with-mismatches)[narinfo1]: When
LOCAL-HASH is true, call 'narinfo-hash->sha256' and use 'bytevector=?'
instead of 'string=?'.
* guix/scripts/challenge.scm (call-with-nar): New procedure.
(narinfo-contents): Express in terms of 'call-with-nar'.
(call-with-mismatches, report-differing-files/external): New
procedures.
(%diffoscope-command): New variable.
(%options): Support "diffoscope" and a string starting with "/".
* tests/challenge.scm (call-mismatch-test): New procedure.
("differing-files"): Rewrite in terms of 'call-mismatch-test'.
("call-with-mismatches"): New test.
* doc/guix.texi (Invoking guix challenge): Document it.
* guix/scripts/archive.scm (show-help, %options): Add '--list'.
(list-contents): New procedure.
(guix-archive): Honor the '--list' option.
* tests/guix-archive.sh: Test it.
* doc/guix.texi (Invoking guix archive): Document it.
* guix/import/crate.scm (%dual-license-rx): Removed function.
(crate->guix-package): Handle most of the multi-licensing cases.
* tests/crate.scm (licenses): Add tests for some licenses.
Co-authored-by: Ludovic Courtès <ludo@gnu.org>
Reported by YOANN P <yoann_mac_donald@hotmail.com>.
* guix/profiles.scm (%profile-directory): Fall back to 'getpwuid' when
"USER" and "LOGNAME" are undefined.
* guix/scripts/pack.scm (squashfs-image)[symlinks*]: New variable.
[build]: Use it instead of SYMLINKS.
(guix-pack): Emit a warning and a hint when "bash" and "bash-minimal"
are missing and PACK-FORMAT is 'squashfs.
* doc/guix.texi (Invoking guix pack): Document the /bin/sh requirement
for Singularity.
Fixes issue #38479 (see: https://bugs.gnu.org/38479).
* guix/build/emacs-build-system.scm (add-source-to-load-path): Move the source
directory to the start of the EMACSLOADPATH environment variable.
Reported-by: Diego Nicola Barbato <dnbarbato@posteo.de>
