* gnu/packages/patches/pipewire-0.2.7-fno-common.patch: New file.
* gnu/local.mk (dist_patch_DATA): Register it.
* gnu/packages/linux.scm (pipewire)[source]: Use it.
Signed-off-by: Guillaume Le Vaillant <glv@posteo.net>
Remove patch. It is now included in upstream release.
* gnu/packages/music.scm (python-mediafile): Update to 0.7.0.
* gnu/packages/patches/python-mediafile-wavpack.patch: Delete patch.
* gnu/local.mk: Deregister it.
Fixes <https://issues.guix.gnu.org/49990>.
Previously, building 'ant-bootstrap' would fail in obscure ways.
* gnu/packages/patches/classpath-miscompilation.patch: New file.
* gnu/local.mk (dist_patch_DATA): Add it.
* gnu/packages/java.scm (classpath-bootstrap)[source]: Use it.
[arguments]: Remove 'remove-call-to-free' phase.
Fixes <https://issues.guix.gnu.org/49295>.
Reported by Maxime Devos <maximedevos@telenet.be>.
* gnu/packages/patches/mailutils-variable-lookup.patch: New file.
* gnu/packages/mail.scm (mailutils)[source]: Use it.
* gnu/local.mk (dist_patch_DATA): Add it.
* gnu/packages/patches/evolution-printableoptions.patch: New file.
* gnu/packages/local.mk (dist_patch_DATA): Add it.
* gnu/packages/gnome.scm (evolution)[source]: Use it.
* gnu/packages/patches/evolution-data-server-printableoptions.patch: New file.
* gnu/packages/local.mk (dist_patch_DATA): Add it.
* gnu/packages/gnome.scm (evolution-data-server)[source]: Use it.
* gnu/packages/patches/python-chai-drop-python2.patch: New file.
* gnu/local.mk (dist_patch_DATA): Add it.
* gnu/packages/python-xyz.scm (python-chai)[source]: Use it.
* gnu/packages/patches/qtwebkit-fix-building-with-bison-3.7.patch: New file.
* gnu/local.mk (dist_patch_DATA): Add it.
* gnu/packages/qt.scm (qtwebkit)[source]: Use it.
Signed-off-by: Guillaume Le Vaillant <glv@posteo.net>
* gnu/packages/patches/qtwebkit-fix-building-with-glib-2.68.patch: New file.
* gnu/local.mk (dist_patch_DATA): Add it.
* gnu/packages/qt.scm (qtwebkit)[source]: Use it.
Signed-off-by: Guillaume Le Vaillant <glv@posteo.net>
* gnu/packages/patches/qtwebkit-fix-building-with-icu-68.patch: New file.
* gnu/local.mk (dist_patch_DATA): Add it.
* gnu/packages/qt.scm (qtwebkit)[source]: Use it
Signed-off-by: Guillaume Le Vaillant <glv@posteo.net>
* gnu/packages/patches/qtwebkit-fix-building-with-python-3.9.patch: New file.
* gnu/local.mk (dist_patch_DATA): Add it.
* gnu/packages/qt.scm (qtwebkit)[source]: Use it.
Signed-off-by: Guillaume Le Vaillant <glv@posteo.net>
* gnu/packages/patches/glade-gls-set-script-name.patch: New patch.
* gnu/packages/patches/glade-test-widget-null-icon.patch: New patch.
* gnu/local.mk (DIST_PATCH_DATA): Add them.
* gnu/packages/gnome.scm (glade3): Update to 3.38.2.
[source]: Apply the patches.
[arguments]: Add new skip-gtk-update-icon-cache and fix-tests phases.
Adapt the fix-docbook phase to the meson build system.
[native-inputs]: Add glib, python-pyobject, gobject-introspection and
gjs. Remove python 2.
* gnu/packages/patches/gtk-doc-respect-xml-catalog.patch: New file.
* gnu/local.mk (DIST_PATCH_DATA): Add it.
* gnu/packages/gtk.scm (gtk-doc): Update to 1.33.2.
[source]: Add gtk-doc-respect-xml-catalog.patch patch.
[build-system]: Switch to meson.
[arguments]: Remove fix-docbook phase.
Remove configure flags that are no longer needed.
[outputs]: Remove the help output since the help-dir option no longer exists.
* gnu/packages/patches/ocaml-4.09-multiple-definitions.patch: New file.
* gnu/packages/ocaml.scm (ocaml-4.09)[source]: Use it.
* gnu/local.mk (dist_patch_DATA): Add it.
The link failure shows up when using ld from GNU Binutils 2.37, and not
with 2.34.
* gnu/packages/patches/ocaml-multiple-definitions.patch: New file.
* gnu/packages/ocaml.scm (ocaml-4.07-boot)[source]: Use it.
* gnu/local.mk (dist_patch_DATA): Add it.
Reported by John Kehayias <john.kehayias@protonmail.com>
in <https://issues.guix.gnu.org/49794>.
* gnu/packages/patches/mesa-opencl-all-targets.patch: New file.
* gnu/local.mk (dist_patch_DATA): Add it.
* gnu/packages/gl.scm (mesa-opencl)[source]: Use it.
* gnu/packages/patches/glib-networking-gnutls-binding.patch: New file.
* gnu/local.mk (dist_patch_DATA): Add it.
* gnu/packages/gnome.scm (glib-networking)[source]: Use it.
* gnu/packages/patches/gnutls-guile-eintr-eagain.patch: New file.
* gnu/local.mk (dist_patch_DATA): Add it.
* gnu/packages/tls.scm (gnutls)[source]: Use it.
* gnu/packages/gl.scm (mesa): Update to 21.1.6.
* gnu/packages/patches/mesa-skip-tests.patch: Remove cache_test.c as it is no
longer needed (test passes).
Signed-off-by: Ludovic Courtès <ludo@gnu.org>
There was/is something funny going on with the bootstrap glibc. The
symbol for posix_spawnp points to getopt_r. Which in turn leads to a
lot of crashed in tests later on. I extended the glibc-bootstrap patch
to work around this bug.
* gnu/packages/patches/glibc-bootstrap-system.patch: Adjust patch to
work correctly with new architectures.
Signed-off-by: Efraim Flashner <efraim@flashner.co.il>
This commit bootstraps the Racket compiler and runtime system from source,
including Racket CS as well as both variants of Racket BC. (One remaining
limitation is discussed in comments added to gnu/packages/racket.scm.)
In the process, it moves to building minimal Racket from the Git repository,
rather than the packaged source tarballs. The Git repository is slightly
better as the ``corresponding source'':
1. A few packages especially closely tied to the Racket core implementation
(like "compiler-lib", "base", and "racket-doc") are developed in the
same Git repository. Having them use the same Guix origin, too, will
help to keep them in sync.
2. The top-level Makefile in the Git repository is an important
``script[] used to control compilation and installation.''
In particular, it cooperates with the "distro-build" package to
create the source tarballs and installers for a Racket distribution.
(Racket supports a notion of custom distributions.)
3. It is ``the preferred form ... for making modifications'' to the core
Racket implementation.
Racket releases are tagged in the Git repository (e.g. "v8.1"). At the
beginning of each release cycle, a branch is created to stabilizer a version
for extra testing. Active development happens on the "master" branch.
* gnu/packages/racket-minimal-sh-via-rktio.patch: Adjust for extra directory
layer.
* gnu/local/racket.scm (cfg-flag:sh-for-rktio, cfg-flag:enable-lt,
cfg-flag:enable-racket, unpack-nanopass+stex,
%main-repo-main-distribution-pkgs): New private variables.
* gnu/local/racket.scm (racket-minimal)[source]: Use Git.
[source](snippet): Unbundle nanopass, stex, and libffi.
[native-inputs]: Use racket-bootstrap-chez-bootfiles, plus its
dependencies (for Chez, plus a Racket for bootstrap pig).
[arguments]: Revise extensively.
* gnu/local/racket.scm (racket-minimal-bc-3m, racket-minimal-bc-cgc): New
packages, hidden at least for now.
(racket-bootstrap-chez-bootfiles): Another new package, but this one is
especially likely to stay hidden.
* gnu/local/racket.scm (racket)[origin](snippet): Unbundle packages
developed in the main Git repository, but leave their links.rktd and
pkgs.rktd entries in place.
[native-inputs]: Add the main Racket Git repository.
[arguments](#:phases): Adjust 'unpack-packages to also unpack package
sources from the main Racket Git repository.
Signed-off-by: Ludovic Courtès <ludo@gnu.org>
This change takes advantage of improved support for layered
and tethered installations in Racket 8.2.
* gnu/packages/racket.scm (extend-layer): New private variable.
This is a script for configuring a new config-tethered layer
chaining to an existing Racket installation.
* gnu/packages/racket.scm (racket)[source](snippet): Unbundle
`racket-minimal`.
[inputs]: Remove inputs that properly belong to `racket-minimal`.
[native-inputs]: Add `racket-minimal` and `extend-layer`.
[arguments]: Stop inheriting from `racket-minimal`. Add phase
'unpack-packages to move the sources and links file into place.
Replace 'configure phase using `extend-layer`.
Replace 'build phase using `raco setup`.
Delete 'install phase.
* gnu/packages/patches/racket-sh-via-rktio.patch: Rename to ...
* gnu/packages/patches/racket-minimal-sh-via-rktio.patch: ... this
file to placate `guix lint`.
* gnu/local.mk (dist_patch_DATA): Update accordingly.
* gnu/packages/racket.scm (racket-minimal)[source]: Likewise.
Signed-off-by: Ludovic Courtès <ludo@gnu.org>
* gnu/packages/patches/python-onnx-shared-libraries.patch: New file.
* gnu/local.mk (dist_patch_DATA): Add it.
* gnu/packages/machine-learning.scm (python-onnx)[source]: Use it.
[arguments]: New field.
* gnu/packages/machine-learning.scm (xnnpack): New variable.
* gnu/packages/patches/xnnpack-system-libraries.patch: New file.
* gnu/local.mk (dist_patch_DATA): Add it.
* gnu/packages/parallel.scm (cpuinfo): New variable.
* gnu/packages/patches/cpuinfo-system-libraries.patch: New file.
* gnu/local.mk (dist_patch_DATA): Add it.
* gnu/packages/parallel.scm (pthreadpool): New variable.
* gnu/packages/patches/pthreadpool-system-libraries.patch: New file.
* gnu/local.mk (dist_patch_DATA): Add it.
* gnu/packages/maths.scm (fxdiv): New variable.
* gnu/packages/patches/fxdiv-system-libraries.patch: New file.
* gnu/local.mk (dist_patch_DATA): Add it.
OpenSSL version 1.1 brought some API changes which broke the build here, fix
that by accessing rsa->n (and e) directly, using RSA_get0_key instead.
* gnu/packages/patches/adb-libssl_11-compatibility.patch: New file
* gnu/local.mk (dist_patch_DATA): Add it.
* gnu/packages/android.scm (android-platform-system-core)[origin]: Use it.
(adb)[inputs]: Replace openssl-1.0 with openssl.
* gnu/packages/rocm.scm (rocm-comgr): New variable.
* gnu/packages/patches/rocm-comgr-3.1.0-dependencies.patch: New file.
* gnu/local.mk (dist_patch_DATA): Add it.
* gnu/packages/patches/restic-0.9.6-fix-tests-for-go1.15.patch: New
file.
* gnu/local.mk (dist_patch_DATA): Register it.
* gnu/packages/backup.scm (restic): Use it.
Signed-off-by: Maxim Cournoyer <maxim.cournoyer@gmail.com>
The patch disabling tests is removed because it only fixes 2 out of 43 test
failures.
* gnu/packages/patches/pypy3-7.3.1-fix-tests.patch: Delete file.
* gnu/local.mk (dist_patch_DATA): De-register it.
* gnu/packages/python.scm (pypy3): Update to 7.3.5.
[patches]: Remove patch.
* gnu/packages/bootloaders.scm (u-boot-sifive-fu540): Rename to ...
(u-boot-sifive-unleashed): ... this. Change board name from sifive_fu540 to
sifive_unleashed.
* gnu/packages/patches/u-boot-riscv64-fix-extlinux.patch: Rename sifive_fu540
to sifive_unleashed.
* gnu/packages/game-development.scm (instead): New variable.
* gnu/packages/patches/instead-use-games-path.patch: New file.
* gnu/local.mk (dist_patch_DATA): Register it here.
* gnu/packages/machine-learning.scm (onnx-optimizer): New variable.
* gnu/packages/patches/onnx-optimizer-system-library.patch: New file.
* gnu/local.mk (dist_patch_DATA): Add it.
This is a follow-up to 2fa26446a1 which
inadvertently inverted the value of this variable.
* gnu/packages/patches/binutils-loongson-workaround.patch: Flip variable value
as it was before 2fa26446a1.
This allows "./pre-inst-env guix build hello --target=x86_64-w64-mingw32"
to succeed. The binary can be run successfully under wine.
* gnu/packages/patches/binutils-mingw-w64-timestamp.patch:
Update to the current version in Debian.
Signed-off-by: Mathieu Othacehe <othacehe@gnu.org>
Commit 87961fc965 inadvertently modified the
patch set for glibc-2.31. This change restores the original patch set.
Fixes: <https://bugs.gnu.org/49516>.
* gnu/packages/base.scm (glibc-2.31) [source]: Use the same patches as glibc,
but replace glibc-hurd-clock_gettime_monotonic.patch with
glibc-2.31-hurd-clock_gettime_monotonic.patch, and add
glibc-hurd-signal-sa-siginfo.patch.
* gnu/packages/patches/glibc-2.31-hurd-clock_gettime_monotonic.patch: Add it.
* gnu/packages/patches/glibc-hurd-signal-sa-siginfo.patch: Add it.
* gnu/local.mk (dist_patch_DATA): Adjust accordingly.
* gnu/packages/tex.scm (biber): Update to 2.16.
[source]: Remove 'patches'.
[inputs]: Add 'perl-io-string', 'perl-parse-recdescent', and
'perl-unicode-collate' (upstream appears to have fixed the issue
initially mentioned as a comment: recent issue was closed after
telling user to use perl-unicode-collate 1.29, which is the one
available; see <https://github.com/plk/biber/issues/378>.)
* gnu/packages/patches/biber-fix-encoding-write.patch,
gnu/packages/patches/biber-sortinithash.patch: Remove.
* gnu/local.mk (dist_patch_DATA): Adjust accordingly.
Co-authored-by: Ludovic Courtès <ludo@gnu.org>
* gnu/packages/patches/ghostscript-no-header-creationdate.patch: Disable
writing "xmp:ModifyDate" and "xmp:CreateDate" if GS_GENERATE_UUIDS is set to
"0" or "no".
* gnu/packages/bittorrent.scm (transmission-remote-gtk): New variable.
* gnu/packages/patches/transmission-remote-gtk-fix-appstream.patch: New file.
* gnu/local.mk (dist_patch_DATA): Add it.
Co-authored-by: Leo Famulari <leo@famulari.name>
This allows proot to be built for aarch64-linux and armhf-linux.
* gnu/packages/patches/proot-test-fhs.patch: Delete patch.
* gnu/local.mk (dist_patch_DATA): Un-register it.
* gnu/packages/linux.scm: Update to 5.2.0-alpha.
[patches]: Remove field.
[supported-system]: New field.
[tests?]: Disable for ARM-based systems.
[phases]{fix-fhs-assumptions-in-tests, set-shell-file-name}: Combine into...
{patch-sources}: ... this new phase.
{build-manpage}: New phase.
{check}: Add seccomp issue URL in comment.
[native-inputs]: Add coreutils issue URL in comment. Add pkg-config and
python-docutils.
[inputs]: Add libarchive.
Make fontconfig use directory contents rather than modification time to
determine cache validity (by pretending that mtime is broken).
* gnu/packages/patches/fontconfig-cache-ignore-mtime.patch: New file.
* gnu/local.mk (dist_patch_DATA): Register it.
* gnu/packages/fontutils.scm (fontconfig)[source]: Use it.
[arguments]: Unset SOURCE_DATE_EPOCH for tests.
Signed-off-by: Ludovic Courtès <ludo@gnu.org>
Fixes <https://bugs.gnu.org/49459>.
* gnu/packages/patches/coreutils-gnulib-tests.patch: New file.
* gnu/local.mk (dist_patch_DATA): Add it.
* gnu/packages/base.scm (coreutils)[source]: Use it.
* gnu/packages/patches/python-seaborn-kde-test.patch: New file.
* gnu/local.mk (dist_patch_DATA): Add it.
* gnu/packages/python-xyz.scm (python-seaborn): Use it, and update to
0.11.1.
Fixes <https://bugs.gnu.org/49417>.
Reported by Maxime Devos <maximedevos@telenet.be>.
* gnu/packages/patches/glibc-cross-objcopy.patch: New file.
* gnu/local.mk (dist_patch_DATA): Add it.
* gnu/packages/base.scm (glibc)[source]: Use it.
* gnu/packages/patches/vtk-8-fix-freetypetools-build-failure.patch: New file.
* gnu/local.mk (dist_patch_DATA): Add it.
* gnu/packages/image-processing.scm (vtk-8): Dis-inherit from VTK. Use the
package definition that predated the update to VTK 9, taken from commit
f4dc8ac6df.
Fixes <https://bugs.gnu.org/49113>.
Reported by Maxime Devos <maximedevos@telenet.be>.
Previously, the cross-compiled libc.so linker script would read:
OUTPUT_FORMAT(elf64-little)
instead of:
OUTPUT_FORMAT(elf64-littleaarch64)
This is because glibc 2.33 runs "objdump -f" instead of
"aarch64-linux-gnu-objdump -f" to determine the output format.
* gnu/packages/patches/glibc-cross-objdump.patch: New file.
* gnu/local.mk (dist_patch_DATA): Add it.
* gnu/packages/base.scm (glibc)[source]: Use it.
Add go@1.16 as a non-default go. Changes from 1.14: Use now-supported GO_LDSO
configuration option for setting the interpreter. Bootstrap with gccgo on
platforms which do not support go-1.4. Fix and re-enable cmd/go script tests.
Fix typo in cgoldflags patch. Break out tests into "check" phase. Remove
references to perl to reduce closure size by ~10%. Set GOCACHE so go doesn't
attempt to access $HOME.
* gnu/packages/patches/go-fix-script-tests.patch: New file.
* local.mk (dist_patch_DATA): Register it.
* gnu/packages/golang.scm (go-1.16): New variable. Use the patch.
Signed-off-by: Efraim Flashner <efraim@flashner.co.il>
* gnu/packages/connman.scm (connman): Update to 1.40.
[source]: Remove upstreamed patch.
[inputs]: Add lz4, rather than propagate it from openconnect.
* gnu/packages/patches/connman-CVE-2021-33833.patch: Delete file.
* gnu/local.mk (dist_patch_DATA): Remove it.
* gnu/packages/patches/cups-CVE-2020-10001.patch: New file.
* gnu/local.mk (dist_patch_DATA): Add it.
* gnu/packages/cups.scm (cups-minimal/fixed): New variable.
(cups-minimal)[replacement]: Assign it to new field.
* gnu/packages/games.scm (widelands): Update to 1.0.
[source]: Download from github as there is no tarball for v1.0 on their
website.
[inputs]: Add curl.
* gnu/packages/patches/widelands-system-wide_minizip.patch: Adjust for
1.0. CmakeLists.txt now already defines CMAKE_MODULE_PATH, so I've moved
FindMinizip.cmake to this path.
Signed-off-by: Nicolas Goaziou <mail@nicolasgoaziou.fr>
* gnu/packages/patches/tlf-support-hamlib-4.2+.patch: New file.
* gnu/local.mk: Add it.
* gnu/packages/radio.scm (tlf): New variable.
Signed-off-by: Guillaume Le Vaillant <glv@posteo.net>
* gnu/packages/web.scm (linkchecker): Update to 10.0.1.
[source]: Remove patches.
[inputs]: Add python-beautifulsoup4. Replace python2-dnspython-1.16,
python2-pyxdg and python2-requests with python-dnspython, python-pyxdg and
python-requests respectively.
[native-inputs]: Replace python2-pytest, python2-miniboa and
python2-parameterized with python-pytest, python-miniboa and
python-parameterized respectively.
[arguments]: Use python 3. Replace check phase instead of deleting the
standard phase and adding a custom one. Use add-installed-pythonpath instead
of setting PYTHONPATH directly. Support disabling of tests with tests?.
[home-page]: Update URI.
* gnu/packages/patches/linkchecker-tests-require-network.patch: Delete file.
* gnu/local.mk (dist_patch_DATA): Unregister it.
Note: this merge actually changes the 'curl' and 'python-attrs' derivations,
as part of solving caf4a7a277 and
12964df69a respectively.
4604d43c0e (gnu: gnutls@3.6.16: Fix cross-compilation.) was ignored because it
cannot currently be tested.
Conflicts:
gnu/local.mk
gnu/packages/aidc.scm
gnu/packages/boost.scm
gnu/packages/curl.scm
gnu/packages/nettle.scm
gnu/packages/networking.scm
gnu/packages/python-xyz.scm
gnu/packages/tls.scm
This is a follow-up to 373c7b5791.
* gnu/packages/patches/bsdiff-CVE-2014-9862.patch: Delete file.
* gnu/local.mk (dist_patch_DATA): Adjust accordingly.
* gnu/packages/patches/efivar-gcc-compat.patch: New file.
* gnu/local.mk (dist_patch_DATA): Adjust accordingly.
* gnu/packages/linux.scm (efivar)[source](patches, modules, snippet): New
fields.
[arguments]: Use CC-FOR-TARGET while at it.
Fixes <https://bugs.gnu.org/49035>.
* gnu/packages/patches/curl-7.77-tls-priority-string.patch: New file.
* gnu/local.mk (dist_patch_DATA): Add it.
* gnu/packages/curl.scm (curl-7.77.0)[source]: Use it.
* gnu/packages/patches/hexchat-add-libera-chat.patch: New file.
* gnu/local.mk (dist_patch_DATA): Add it.
* gnu/packages/messaging.scm (hexchat)[source]: Use it.
* gnu/packages/crates-io.scm (rust-ndarray-0.13): New variable.
(rust-ndarray-0.12): Inherit from above.
* gnu/packages/patches/rust-ndarray-0.13-remove-blas-src.patch: New file.
* gnu/local.mk: Register new file.
* gnu/packages/tor.scm (tor): Update to 0.4.6.5.
[source]: Add a patch to fix building with GCC 7.
* gnu/packages/patches/tor-fix-build-with-gcc-7.patch: New file.
* gnu/local.mk (dist_patch_DATA): Add it.
This fixes the nonreproducibility in gcc documented here:
https://reproducible-builds.org/docs/archives/#gnu-libtool
* gnu/packages/patches/gcc-8-sort-libtool-find-output.patch: New patch.
* gnu/local.mk (dist_patch_DATA): Register it.
* gnu/packages/gcc.scm (gcc-8)[source]: Apply it.
* gnu/packages/patches/connman-CVE-2021-33833.patch: New file.
* gnu/local.mk (dist_patch_DATA): Add it.
* gnu/packages/connman.scm (connman)[source]: Use it.
* gnu/packages/patches/gcc-cross-gxx-include-dir.patch: New file.
* gnu/packages/patches/gcc-10-cross-environment-variables.patch: New file.
* gnu/packages/gcc.scm (gcc): Point to GCC-10.
(gcc-objc): Point to GCC-OBJC-10.
(gcc-objc++): Point to GCC-OBJC++-10.
* gnu/packages/cross-base.scm (cross-gcc)[source](patches): Apply the new
patches.
This is something Fedora already does since 2010, so it should be safe,
and saves a lot of space.
* gnu/packages/patches/python-2.7-no-static-lib.patch: New file.
* gnu/packages/patches/python-3-no-static-lib.patch: New file.
* gnu/local.mk (dist_patch_DATA): Add them.
* gnu/packages/python.scm (python-2.7, python-3): Use them.
* gnu/packages/patches/polkit-CVE-2021-3560.patch: New file.
* gnu/local.mk (dist_patch_DATA): Add it.
* gnu/packages/polkit.scm (polkit/fixed): New variable.
(polkit)[replacement]: New field.
This fixes the build with ffmpeg 4.4.
* gnu/packages/patches/ppsspp-disable-upgrade-and-gold.patch: Rebase patch.
* gnu/packages/emulators.scm (ppsspp): Update to 1.11.3-1.69fa207.
[source]: Adjust origin snippet to unbundle the newly added zstd library.
The 3.7 branch, while not considered the "stable" branch upstream, has been
adopted by most major GNU/Linux distributions such as Debian, Arch, openSUSE,
etc. It has the benefit of receiving all the security fixes.
* gnu/packages/tls.scm (gnutls): Update to 3.7.2. Remove trailing #t.
[source]: Remove the gnutls-CVE-2021-20231.patch and
gnutls-CVE-2021-20232.patch patches, now incorporated in the source.
* gnu/packages/patches/gnutls-CVE-2021-20231.patch: Delete file.
* gnu/packages/patches/gnutls-CVE-2021-20232.patch: Likewise.
* gnu/local.mk (dist_patch_DATA): De-register them.
* gnu/packages/patches/nsis-source-date-epoch.patch: New patch.
* gnu/local.mk (dist_patch_DATA): Register it.
* gnu/packages/installers.scm (make-nsis)[source]: Apply it.
* gnu/packages/patches/mosaicatcher-unbundle-htslib.patch: New file.
* gnu/local.mk (dist_patch_DATA): Add it.
* gnu/packages/bioinformatics.scm (mosaicatcher): New variable.
This patch was added on 'core-updates' in
43c889de85, but no longer necessary since the
update to 2.3.1 in 91741db539.
* gnu/packages/patches/python-pyflakes-fix-tests.patch: Delete file.
* gnu/local.mk (dist_patch_DATA): Adjust accordingly.
* gnu/packages/python-xyz.scm (python-pyflakes)[source](patches): Remove.
This is a followup to 4ebd4a58ce which
removed the patch, but it was still necessary for some dependents.
* gnu/packages/patches/ucx-tcp-iface-ioctl.patch: New file.
* gnu/local.mk (dist_patch_DATA): Adjust accordingly.
* gnu/packages/fabric-management.scm (ucx)[source](patches): New field.
