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1048 Commits

Author SHA1 Message Date
Paul A. Patience
ee89bbb5ed
gnu: nomad-optimizer: Disable failing test. 
* gnu/packages/maths.scm (nomad-optimizer)[arguments]: Disable the
examples/advanced/library/PSDMads test.

Signed-off-by: Mathieu Othacehe <othacehe@gnu.org>
 2022-04-26 10:45:42 +02:00
Andreas Enge
bfe6d6ea66
gnu: lrslib: Update to 7.2. 
* gnu/packages/maths.scm (lrslib): Update to 7.2.
 2022-04-19 16:09:32 +02:00
Paul A. Patience
d262a258bb
gnu: nomad-optimizer: Fix some tests. 
* gnu/packages/maths.scm (nomad-optimizer)[arguments]<#:phases>
[fix-sources-for-tests]: Enable the pipefail option in the (generated)
script that runs tests. Enable the basic batch example3 test. Fix the
advanced library FixedVariable test (and seemingly the neighbor PSDMads
test). Expand some comments.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
 2022-04-19 12:29:44 +02:00
Paul A. Patience
11e761b9a6
gnu: nomad-optimizer: Update to 4.2.0. 
* gnu/packages/maths.scm (nomad-optimizer): Update to 4.2.0.
[arguments]: Accommodate updated build process.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
 2022-04-19 12:29:44 +02:00
Paul A. Patience
3a6703268b
gnu: nomad-optimizer: Remove trailing booleans. 
* gnu/packages/maths.scm (nomad-optimizer)[arguments]: Remove trailing
booleans.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
 2022-04-19 12:29:44 +02:00
Paul A. Patience
3a9b925f44
gnu: nomad-optimizer: Remove input labels. 
* gnu/packages/maths.scm (nomad-optimizer)[native-inputs]: Remove
labels.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
 2022-04-19 12:29:44 +02:00
Paul A. Patience
d483dbe0fa
gnu: gmsh: Update to 4.9.5. 
* gnu/packages/maths.scm (gmsh): Update to 4.9.5.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
 2022-04-19 12:29:44 +02:00
Paul A. Patience
7488c73dd2
gnu: gnuplot: Update to 5.4.3. 
* gnu/packages/maths.scm (gnuplot): Update to 5.4.3.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
 2022-04-19 12:29:43 +02:00
Ludovic Courtès
16372cb347
gnu: sundials: Remove input labels. 
* gnu/packages/maths.scm (sundials)[native-inputs, inputs]: Remove labels.
(sundials-openmpi)[inputs]: Remove labels.
 2022-04-14 14:48:21 +02:00
Ludovic Courtès
61bcd648ca
gnu: sundials: Update to 6.1.1. 
* gnu/packages/maths.scm (sundials): Update to 6.1.1.
[inputs]: Add PETSC.
(sundials-openmpi)[inputs]: Remove PETSC.
[arguments]: Remove now unnecessary flags.  Change "MPI_ENABLE" to "ENABLE_MPI".
 2022-04-14 14:48:21 +02:00
Arun Isaac
973ee1c91d
gnu: gsl: Force bootstrap when cross-compiling to riscv64-linux. 
* gnu/packages/maths.scm (gsl)[arguments]: Force an autotools bootstrap
when cross-compiling to riscv64-linux.
[native-inputs]: Add autoconf, automake and libtool when cross-compiling
to riscv64-linux.

Signed-off-by: Efraim Flashner <efraim@flashner.co.il>
 2022-03-31 16:14:52 +03:00
Ludovic Courtès
2da0f2828b
gnu: petsc-openmpi: Remove input labels. 
* gnu/packages/maths.scm (petsc-openmpi)[inputs]: Use 'modify-inputs'.
[arguments]: Adjust label name for hdf5.
 2022-03-18 16:03:32 +01:00
Ludovic Courtès
5f83f95210
gnu: petsc-openmpi: Fix compilation with Scotch 7.0. 
* gnu/packages/maths.scm (petsc-openmpi)[inputs]: Add SCOTCH:METIS.
[arguments]: Add 'adjust-pt-scotch-library-names' phase.
 2022-03-18 16:03:32 +01:00
Ludovic Courtès
6e09ab9f61
gnu: scotch: Explicitly pass "-DINTSIZE" to CMake. 
Previously, the 'scotch' and 'pt-scotch' packages would use the default
int size, which turned out to be 32 on x86_64-linux instead of 64 as it
used to be in Scotch 6.x.

* gnu/packages/maths.scm (scotch)[arguments]: Add "-DINTSIZE" to #:configure-flags.
(scotch32)[arguments]: Likewise.
(pt-scotch)[arguments]: Likewise.
(pt-scotch32)[arguments]: Likewise.
 2022-03-07 22:49:27 +01:00
Ludovic Courtès
96bc9420cb
gnu: hypre: Remove input labels. 
* gnu/packages/maths.scm (hypre)[native-inputs, inputs]: Remove labels.
(hypre-openmpi)[inputs]: Use 'modify-inputs'.
 2022-03-02 19:26:16 +01:00
Ludovic Courtès
5a04a8a6bc
gnu: texlive-latex-wrapfig: Rename to "texlive-wrapfig". 
* gnu/packages/tex.scm (texlive-latex-wrapfig): Rename to...
(texlive-wrapfig): ... this.
(texlive-latex-wrapfig): Define as deprecated.
* gnu/packages/maths.scm (hypre)[native-inputs]: Use new name.
* gnu/packages/python-xyz.scm (python-ipython-documentation)
(python-numpy-documentation): Likewise.
 2022-03-02 19:26:16 +01:00
Julien Lepiller
8fc4cfd3ce
gnu: why3: Update to 1.4.1. 
* gnu/packages/maths.scm (why3): Update to 1.4.1.
 2022-03-02 09:45:16 +01:00
Marius Bakke
1bd1f42a31
gnu: Remove unneeded uses of 'libiconv'. 
iconv is part of glibc, there is no need to add it as input.

* gnu/packages/accessibility.scm (brltty)[inputs]: Remove LIBICONV.
* gnu/packages/compression.scm (innoextract)[inputs]: Likewise.
* gnu/packages/haskell-apps.scm (darcs)[inputs]: Likewise.
* gnu/packages/kde-multimedia.scm (k3b)[inputs]: Likewise.
* gnu/packages/linphone.scm (liblinphone)[inputs]: Likewise.
* gnu/packages/mail.scm (mailutils)[inputs]: Likewise.
* gnu/packages/maths.scm (libqalculate)[inputs]: Likewise.
* gnu/packages/pep.scm (pep-engine)[inputs]: Likewise.
* gnu/packages/vim.scm (neovim)[inputs]: Likewise.
* gnu/packages/wget.scm (wget2)[inputs]: Likewise.
* gnu/packages/telegram.scm (telegram-desktop)[inputs]: Likewise.
* gnu/packages/video.scm (transcode)[native-inputs]: Likewise.
 2022-02-15 20:44:21 +01:00
Ludovic Courtès
ee92b0fb7d
gnu: mumps: Remove input labels. 
* gnu/packages/maths.scm (mumps)[inputs]: Remove labels.
[arguments]: Adjust 'configure' phase to not rely on the "mpi" and
"blas" labels.
(mumps-metis, mumps-openmpi, mumps-metis-openmpi): Use 'modify-inputs'.
 2022-02-15 17:24:08 +01:00
Ludovic Courtès
d4709d78c3
gnu: scotch: Update to 7.0.1. 
* gnu/packages/maths.scm (scotch): Update to 7.0.1.
[source]: Switch to 'git-fetch'.
[build-system]: Switch to CMAKE-BUILD-SYSTEM.
[arguments]: Add #:configure-flags.  Remove #:make-flags.  Remove
'chdir-to-src', 'configure', and 'build-esmumps' phases.
[properties]: Update 'release-monitoring-url' property.
(scotch32, pt-scotch, pt-scotch32): Update accordingly, replacing now
useless build phases with #:configure-flags.
(scotch-shared, pt-scotch-shared): Mark as deprecated.
(mumps)[arguments]: In 'configure' phase, use '-lesmumps'
unconditionally, since that's now how pt-scotch calls it.
 2022-02-15 17:24:08 +01:00
Petr Hodina
4c1dff9abe
gnu: opencascade-occt: Update to 7.6.0. 
* gnu/packages/maths.scm (opencascade-occt): Update to 7.6.0.
  [native-inputs]: Add fontconfig.

Signed-off-by: Guillaume Le Vaillant <glv@posteo.net>
 2022-02-11 16:47:45 +01:00
Eric Bavier
10b901a437
gnu: superlu: Update to 5.3.0. 
* gnu/packages/maths.scm (superlu): Update to 5.3.0.
[source]: Adjust to new url.
 2022-02-05 00:24:40 -06:00
Efraim Flashner
264162124f
gnu: openblas: Fix building on riscv64-linux. 
* gnu/packages/maths.scm (openblas)[arguments]: Adjust make-flags on
riscv64-linux to target the correct architecture when building for
riscv64-linux.
 2022-02-01 10:44:53 +02:00
Nicolas Goaziou
c5f1f8b81e
gnu: Properly deprecate texlive-generic-ulem. 
* gnu/packages/python-xyz.scm (python-nbconvert):
* gnu/packages/maths.scm (hypre): Apply deprecation.
* gnu/packages/tex.scm (texlive-generic-ulem): Fix typo in deprecation
command.
 2022-01-28 15:05:01 +01:00
Nicolas Goaziou
2b37ec1c60
gnu: Remove occurrences of deprecated texlive-latex-capt-of. 
* gnu/packages/maths.scm (hypre):
* gnu/packages/python-xyz.scm (python-numpy-documentation):
(python-ipython-documentation): Use texlive-capt-of instead of texlive-latex-capt-of.
 2022-01-28 14:37:49 +01:00
Morgan Smith
d0744d8650
gnu: jacal: Update to 1c7. 
* gnu/packages/patches/jacal-fix-texinfo.patch: Delete file.
* gnu/local.mk (dist_patch_DATA): Delete this.
* gnu/packages/maths.scm (jacal)[source]: Delete this patch.
[version]: Update to 1c7.

Signed-off-by: Oleg Pykhalov <go.wigust@gmail.com>
 2022-01-22 12:07:55 +03:00
Felix Gruber
895a2669df
gnu: dune-pdelab: Update to 2.7.1. 
* gnu/packages/maths.scm (dune-pdelab): Update to 2.7.1.
  [version]: Use `git-version` to compute the version string.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
 2022-01-20 15:28:15 +01:00
Felix Gruber
ad0a7a16d9
gnu: dune-functions: Update to 2.7.1. 
* gnu/packages/maths.scm (dune-functions): Update to 2.7.1.
  [arguments]: Parallelize build-tests phase.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
 2022-01-20 15:28:15 +01:00
Felix Gruber
adc65e9691
gnu: dune-typetree: Update to 2.7.1. 
* gnu/packages/maths.scm (dune-typetree): Update to 2.7.1.
  [arguments]: Parallelize build-tests phase.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
 2022-01-20 15:28:14 +01:00
Felix Gruber
fb6e3fdfa7
gnu: dune-subgrid: Update to 2.7.1. 
* gnu/packages/maths.scm (dune-subgrid): Update to 2.7.1.
  [version]: Use `git-version` to compute the version string.
  [arguments]: Parallelize build-tests phase.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
 2022-01-20 15:28:14 +01:00
Felix Gruber
fff6f00c35
gnu: dune-alugrid: Update to 2.7.1. 
* gnu/packages/maths.scm (dune-alugrid): Update to 2.7.1.
  [version]: Use `git-version` to compute the version string.
  [arguments]: Parallelize build-tests phase.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
 2022-01-20 15:28:14 +01:00
Felix Gruber
ef07f19b93
gnu: dune-localfunctions: Update to 2.7.1. 
* gnu/packages/maths.scm (dune-localfunctions): Update to 2.7.1.
  [arguments]: Parallelize build-tests phase.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
 2022-01-20 15:28:14 +01:00
Felix Gruber
8159cd08d2
gnu: dune-istl: Update to 2.7.1. 
* gnu/packages/maths.scm (dune-istl): Update to 2.7.1.
  [arguments]: Parallelize build-tests phase.
  [source](patches) Remove patch that is no longer needed.
* gnu/packages/patches/dune-istl-2.7-fix-non-mpi-tests.patch: Remove file.
* gnu/local.mk (dist_patch_DATA): Remove above patch.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
 2022-01-20 15:28:14 +01:00
Felix Gruber
67e6b69916
gnu: dune-grid: Update to 2.7.1. 
* gnu/packages/maths.scm (dune-grid): Update to 2.7.1.
  [arguments]: Parallelize build-tests phase.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
 2022-01-20 15:28:14 +01:00
Felix Gruber
15ae25bd25
gnu: dune-uggrid: Update to 2.7.1. 
* gnu/packages/maths.scm (dune-uggrid): Update to 2.7.1.
  [arguments]: Parallelize build-tests phase.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
 2022-01-20 15:28:14 +01:00
Felix Gruber
9e5cdc4a6c
gnu: dune-geometry: Update to 2.7.1. 
* gnu/packages/maths.scm (dune-geometry): Update to 2.7.1.
  [arguments]: Parallelize build-tests phase.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
 2022-01-20 15:28:13 +01:00
Felix Gruber
3bfcc63c31
gnu: dune-common: Update to 2.7.1. 
* gnu/packages/maths.scm (dune-common): Update to 2.7.1.
  [arguments]: Parallelize build-tests phase.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
 2022-01-20 15:28:13 +01:00
Felix Gruber
6b36def51c
gnu: Modernize add-openmpi-to-dune-package 
* gnu/packages/maths.scm (add-openmpi-to-dune-package): Use
  modify-inputs.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
 2022-01-20 15:28:13 +01:00
Felix Gruber
cc4553c6b3
gnu: Remove python2-cvxopt. 
* gnu/packages/maths.scm (python2-cvxopt): Remove variable.

Signed-off-by: Leo Famulari <leo@famulari.name>
 2022-01-12 14:12:47 -05:00
Felix Gruber
21bc72ad81
gnu: python-cvxopt: Update to 1.2.7. 
* gnu/packages/maths.scm (python-cvxopt): Update to 1.2.7.

Signed-off-by: Leo Famulari <leo@famulari.name>
 2022-01-12 14:12:47 -05:00
Felix Gruber
cd68fc1e42
gnu: ceres: Update to 2.0.0. 
* gnu/packages/maths.scm (ceres): Update to 2.0.0.
  [inputs]: Use simplified format.
  (ceres-solver-benchmarks)[phases]: Add schur_eliminator_benchmark.
  Replace autodiff_cost_function_benchmark with new autodiff_benchmarks.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
 2022-01-11 20:35:00 +01:00
Felix Gruber
80f616139c
gnu: dealii: Update to 9.3.2. 
* gnu/packages/maths.scm (dealii): Update to 9.3.2.
  [source]: Add dealii-fix-compiliation-with-boost-1.78.patch and
  dealii-fix-sundials.patch.
  [inputs]: Use simplified format.
  [native-inputs]: Use simplified format.
* gnu/packages/patches/dealii-fix-compiliation-with-boost-1.78.patch:
  New file.
* gnu/packages/patches/dealii-fix-sundials.patch: New file.
* gnu/local.mk: Add new patch files.

Signed-off-by: Nicolas Goaziou <mail@nicolasgoaziou.fr>
 2022-01-11 10:43:47 +01:00
Ludovic Courtès
4cd0b37f6b
gnu: gsl: Add 'tunable?' property. 
* gnu/packages/maths.scm (gsl)[properties]: New field.
 2022-01-01 15:36:12 +01:00
Ludovic Courtès
6b70412370
gnu: Add ceres-solver-benchmarks. 
* gnu/packages/maths.scm (ceres-solver-benchmarks): New variable.
 2022-01-01 15:23:53 +01:00
Ludovic Courtès
24667081ad
gnu: ceres-solver: Mark as tunable. 
* gnu/packages/maths.scm (ceres)[properties]: New field.
 2022-01-01 15:23:53 +01:00
Vagrant Cascadian
ae876b9ce1
gnu: Capitalize beginning of synopsis. 
* gnu/packages/admin.scm (hungrycat)[synopsis]: Captalize.
* gnu/packages/cobol.scm (gnucobol)[synopsis]: Likewise.
* gnu/packages/cpp.scm (clipper)[synopsis]: Likewise.
* gnu/packages/crates-graphics.scm (rust-piston-texture-0.8)[synopsis]:
  Likewise.
* gnu/packages/crates-io.scm (rust-alloc-stdlib-0.2, rust-atom-0.3,
  rust-oorandom-11.1, rust-r2d2, rust-scheduled-thread-pool-0.2,
  rust-takeable-option-0.4, rust-ttf-parser-0.12)[synopsis]: Likewise.
* gnu/packages/games.scm (roguebox-adventures)[synopsis]: Likewise.
* gnu/packages/gl.scm (libepoxy)[synopsis]: Likewise.
* gnu/packages/gnome-xyz.scm (arc-theme)[synopsis]: Likewise.
* gnu/packages/haskell-xyz.scm (ghc-cborg-json, ghc-rio)[synopsis]: Likewise.
* gnu/packages/installers.scm (mingw-path)[synopsis]: Likewise.
* gnu/packages/lisp-xyz.scm (sbcl-cl-utilities)[synopsis]: Likewise.
* gnu/packages/maths.scm (coda)[synopsis]: Likewise.
* gnu/packages/ocaml.scm (ocaml4.07-ppx-sexp-message)[synopsis]: Likewise.
* gnu/packages/perl6.scm (perl6-json)[synopsis]: Likewise.
* gnu/packages/python-xyz.scm (python-markuppy,
  python-febelfin-coda)[synopsis]: Likewise.
* gnu/packages/statistics.scm (r-magrittr)[synopsis]: Likewise.
* gnu/packages/terminals.scm (sakura)[synopsis]: Likewise.
 2021-12-30 21:23:27 -08:00
Vagrant Cascadian
9c3c68dae4
gnu: Remove leading article from synopsis. 
* gnu/packages/admin.scm (hungrycat)[synopsis]: Remove leading article.
* gnu/packages/cobol.scm (gnucobol)[synopsis]: Likewise.
* gnu/packages/cpp.scm (clipper)[synopsis]: Likewise.
* gnu/packages/crates-graphics.scm (rust-piston-texture-0.8)[synopsis]:
  Likewise.
* gnu/packages/crates-io.scm (rust-alloc-stdlib-0.2, rust-atom-0.3,
  rust-oorandom-11.1, rust-r2d2, rust-scheduled-thread-pool-0.2,
  rust-takeable-option-0.4, rust-ttf-parser-0.12,
  rust-svd-parser-0.9)[synopsis]: Likewise.
* gnu/packages/games.scm (roguebox-adventures)[synopsis]: Likewise.
* gnu/packages/gl.scm (libepoxy)[synopsis]: Likewise.
* gnu/packages/gnome-xyz.scm (arc-theme)[synopsis]: Likewise.
* gnu/packages/haskell-xyz.scm (ghc-cborg-json, ghc-rio)[synopsis]: Likewise.
* gnu/packages/installers.scm (mingw-path)[synopsis]: Likewise.
* gnu/packages/lisp-xyz.scm (sbcl-cl-utilities)[synopsis]: Likewise.
* gnu/packages/lisp.scm (gcl, clisp)[synopsis]: Likewise.
* gnu/packages/maths.scm (coda)[synopsis]: Likewise.
* gnu/packages/ocaml.scm (ocaml4.07-ppx-sexp-message)[synopsis]: Likewise.
* gnu/packages/perl6.scm (perl6-json)[synopsis]: Likewise.
* gnu/packages/python-xyz.scm (python-pari-jupyter, python-markuppy,
  python-febelfin-coda)[synopsis]: Likewise.
* gnu/packages/scheme.scm (mit-scheme)[synopsis]: Likewise.
* gnu/packages/statistics.scm (r-magrittr)[synopsis]: Likewise.
* gnu/packages/terminals.scm (sakura)[synopsis]: Likewise.
 2021-12-30 20:54:47 -08:00
Marius Bakke
a39e64bc22
gnu: Add feedgnuplot. 
* gnu/packages/maths.scm (feedgnuplot): New public variable.
 2021-12-26 00:58:28 +01:00
Julien Lepiller
2317a5e17f
gnu: frama-c: Update to 24.0. 
* gnu/packages/maths.scm (frama-c): Update to 24.0.
 2021-12-22 02:07:21 +01:00
Liliana Marie Prikler
78bfbfb5a7
gnu: cglm: Use meson-build-system. 
The CMake-based builds fail to correctly encode the version, leading to build
failures in dependencies.  See <https://bugs.gnu.org/52663>.

* gnu/packages/maths.scm (cglm)[build-system]: Change to meson-build-system.
[arguments]: Adjust #:configure-flags accordingly.
 2021-12-19 21:46:31 +01:00