* gnu/packages/maths.scm (petsc): New variable.
(petsc-complex): New variable.
* gnu/packages/patches/petsc-fix-threadcomm.patch: New patch.
* gnu-system.am (dist_patch_DATA): Add it.
* gnu/system.scm (<operating-system>)[pam-services, setuid-programs]:
New fields.
(etc-directory)[bashrc]: Prepend /run/setuid-programs to $PATH.
(operating-system-etc-directory): Honor
'operating-system-pam-services'.
(%setuid-programs): New variable.
(operating-system-boot-script): Add (guix build utils) to the set of
imported modules. Call 'activate-setuid-programs' in boot script.
* gnu/system/linux.scm (base-pam-services): New procedure.
* guix/build/activation.scm (%setuid-directory): New variable.
(activate-setuid-programs): New procedure.
* build-aux/hydra/demo-os.scm: Add 'pam-services' field.
* gnu/system/linux-initrd.scm (expression->initrd): Rename 'inputs'
parameter to 'to-copy'. Remove 'files-to-copy'. Rewrite 'builder' as
a gexp, and use 'gexp->derivation'.
(qemu-initrd): Adjust accordingly.
* gnu/system.scm (file-union): Make 'name' the first parameter; remove
'inputs' parameter. Rewrite using 'gexp->derivation'.
(etc-directory): Adjust accordingly.
(operating-system-derivation): Ditto.
* gnu/services.scm (<service>)[inputs]: Remove.
* gnu/system.scm (links): Remove.
(etc-directory): Add PASSWD and SHADOW to #:inputs.
(operating-system-boot-script): Pass ETC to 'dmd-configuration-file'.
(operating-system-derivation): Remove EXTRAS from the union.
* gnu/system/linux.scm (pam-service->configuration): Rewrite in terms of
'gexp->derivation'. Compute the contents on the build side. Expect
'arguments' to contain a list of gexps.
(pam-services->directory): Rewrite in terms of 'gexp->derivation'.
(unix-pam-service): Change 'arguments' to a list of one gexp.
* gnu/system/shadow.scm (<user-account>)[inputs]: Remove.
[shell]: Change default value to a gexp.
(passwd-file): Rewrite in terms of 'gexp->derivation'. Compute
contents on the build side.
* gnu/services/base.scm (host-name-service, mingetty-service,
nscd-service, syslog-service, guix-service): Change 'start' and 'stop'
to gexps; remove 'inputs' field.
(guix-build-accounts): Change 'shell' field to a gexp.
* gnu/services/networking.scm (static-networking-service): Change
'start' and 'stop' to gexps; remove 'inputs' field.
* gnu/services/xorg.scm (slim-service): Likewise.
* gnu/services/dmd.scm (dmd-configuration-file): Expect ETC to be a
derivation. Change 'config' to a gexp. Use 'gexp->file' instead of
'text-file'.
* doc/guix.texi (Defining Services): Update nscd example with gexps, and
without 'inputs'. Add xref to "G-Expressions".
* gnu/system.scm (operating-system-boot-script): Use 'gexp->file'
instead of 'text-file*'.
* gnu/system/vm.scm (expression->derivation-in-linux-vm): Likewise.
(system-qemu-image/shared-store-script)[builder]: Turn into a gexp.
Use 'gexp->derivation' instead of 'derivation-expression'.
* gnu/packages/rdf.scm (soprano): Add input clucene and patch the cmake
file looking for it.
* gnu/packages/patches/soprano-find-clucene.patch: New file.
* gnu-system.am (dist_patch_DATA): Register the patch.
definitions accordingly.
* guix/build/cmake-build-system.scm (configure): Add flags.
* gnu/packages/maths.scm (lapack): Drop special code.
* gnu/packages/ssh.scm (libssh): Drop special code.
* gnu/packages/slim.scm (slim): Drop special code and enable shared library.
Co-authored-by: Eric Bavier <bavier@member.fsf.org>
and make input qjson native.
* gnu/packages/kde.scm (libdbusmenu-qt): Add native input doxygen for
building the documentation.
Make input qjson native, as it is needed only for the tests.
* gnu/packages/doxygen.scm: New file.
* gnu/packages/patches/doxygen-test.patch,
gnu/packages/patches/doxygen-tmake.patch: New files.
* gnu-system.am (GNU_SYSTEM_MODULES, dist_patch_DATA): Register the new files.
* gnu/system/vm.scm (system-qemu-image/shared-store-script): Move
'initrd' definition to the top-level. Have a single definition of
'initrd', 'image', and 'os-drv'.
* gnu/system.scm (operating-system-boot-script): New procedure.
(operating-system-derivation): Use it. Remove DMD-CONF from the
file union. Add BOOT-DRV to the inputs.
