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72756 Commits

Author SHA1 Message Date
Efraim Flashner
23dbed6f76
gnu: julia-dictionaries: Update to 0.3.10. 
* gnu/packages/julia-xyz.scm (julia-dictionaries): Update to 0.3.10.
 2021-07-29 14:43:40 +03:00
Efraim Flashner
e076ed6eee
gnu: julia-dataapi: Update to 1.7.0. 
* gnu/packages/julia-xyz.scm (julia-dataapi): Update to 1.7.0.
 2021-07-29 14:43:40 +03:00
Efraim Flashner
57e5c907d9
gnu: julia-constructionbase: Update to 1.3.0. 
* gnu/packages/julia-xyz.scm (julia-constructionbase): Update to 1.3.0.
 2021-07-29 14:43:40 +03:00
Efraim Flashner
9cd7145bcd
gnu: julia-compat: Update to 3.32.0. 
* gnu/packages/julia-xyz.scm (julia-compat): Update to 3.32.0.
 2021-07-29 14:43:40 +03:00
Efraim Flashner
ebe8aa846e
gnu: julia-colorschemes: Update to 3.13.0. 
* gnu/packages/julia-xyz.scm (julia-colorschemes): Update to 3.13.0.
 2021-07-29 14:43:39 +03:00
Efraim Flashner
b5df917439
gnu: julia-blockbandedmatrices: Update to 0.10.7. 
* gnu/packages/julia-xyz.scm (julia-blockbandedmatrices): Update to 0.10.7.
 2021-07-29 14:43:39 +03:00
Efraim Flashner
f0398a070b
gnu: julia-blockarrays: Update to 0.16.3. 
* gnu/packages/julia-xyz.scm (julia-blockarrays): Update to 0.16.3.
 2021-07-29 14:43:39 +03:00
Efraim Flashner
ad8c40407c
gnu: julia-benchmarktools: Update to 1.1.1. 
* gnu/packages/julia-xyz.scm (julia-benchmarktools): Update to 1.1.1.
 2021-07-29 14:43:39 +03:00
Efraim Flashner
5d45f7b1d5
gnu: julia-bandedmatrices: Update to 0.16.10. 
* gnu/packages/julia-xyz.scm (julia-bandedmatrices): Update to 0.16.10.
 2021-07-29 14:43:39 +03:00
Efraim Flashner
af3699492e
gnu: julia-axisarrays: Update to 0.4.4. 
* gnu/packages/julia-xyz.scm (julia-axisarrays): Update to 0.4.4.
 2021-07-29 14:43:39 +03:00
Efraim Flashner
01546260b8
gnu: julia-arraylayouts: Update to 0.7.3. 
* gnu/packages/julia-xyz.scm (julia-arraylayouts): Update to 0.7.3.
 2021-07-29 14:43:38 +03:00
Efraim Flashner
7067111296
gnu: julia-arrayinterface: Update to 3.1.19. 
* gnu/packages/julia-xyz.scm (julia-arrayinterface): Update to 3.1.19.
 2021-07-29 14:43:38 +03:00
Efraim Flashner
bfd92c357a
gnu: julia-interpolations: Update to 0.13.3. 
* gnu/packages/julia-xyz.scm (julia-interpolations): Update to 0.13.3.
[propagated-inputs]: Add julia-requires.
[native-inputs]: Add julia-zygote.
 2021-07-29 14:43:38 +03:00
Efraim Flashner
f93a9835f3
gnu: julia-recursivearraytools: Update to 2.16.1. 
* gnu/packages/julia-xyz.scm (julia-recursivearraytools): Update to 2.16.1.
[propagated-inputs]: Add julia-chainrulescore.
 2021-07-29 14:43:38 +03:00
Efraim Flashner
6752fc153a
gnu: julia-imageinterminal: Udate to 0.4.7. 
* gnu/packages/julia-xyz.scm (julia-imageinterminal): Update to 0.4.7.
[propagated-inputs]: Add julia-imagebase, julia-requires. Remove
julia-imagetransformations.
 2021-07-29 14:43:38 +03:00
Efraim Flashner
0f15f77464
gnu: julia-ellipsisnotation: Adjust test suite for julia-1.6. 
* gnu/packages/julia-xyz.scm (julia-ellipsisnotation)[arguments]: Add
phase to skip outdated test.
 2021-07-29 14:43:38 +03:00
Efraim Flashner
8d787994e5
gnu: julia-zygote: Update to 0.6.17. 
* gnu/packages/julia-xyz.scm (julia-zygote): Update to 0.6.17.
 2021-07-29 14:43:38 +03:00
Efraim Flashner
f6bc4657e1
gnu: julia-unitful: Update to 1.9.0. 
* gnu/packages/julia-xyz.scm (julia-unitful): Update to 1.9.0.
 2021-07-29 14:43:37 +03:00
Efraim Flashner
9fe69d78d6
gnu: julia-tables: Update to 1.4.4. 
* gnu/packages/julia-xyz.scm (julia-tables): Update to 1.4.4.
 2021-07-29 14:43:37 +03:00
Efraim Flashner
2d25b2f9b7
gnu: julia-staticarrays: Update to 1.2.8. 
* gnu/packages/julia-xyz.scm (julia-staticarrays): Update to 1.2.8.
 2021-07-29 14:43:37 +03:00
Efraim Flashner
071f036625
gnu: julia-finitedifferences: Update to 0.12.17. 
* gnu/packages/julia-xyz.scm (julia-finitedifferences): Update to 0.12.17.
 2021-07-29 14:43:37 +03:00
Efraim Flashner
e477487e00
gnu: julia-chainrulestestutils: Update to 1.0.0. 
* gnu/packages/julia-xyz.scm (julia-chainrulestestutils): Update to 1.0.0.
 2021-07-29 14:43:37 +03:00
Efraim Flashner
038a7dd56b
gnu: julia-chainrulescore: Update to 1.0.2. 
* gnu/packages/julia-xyz.scm (julia-chainrulescore): Update to 1.0.2.
 2021-07-29 14:43:37 +03:00
Efraim Flashner
4a79a39b1c
gnu: julia-chainrules: Update to 1.1.0. 
* gnu/packages/julia-xyz.scm (julia-chainrules): Update to 1.1.0.
 2021-07-29 14:43:31 +03:00
Efraim Flashner
228763316a
gnu: julia-specialfunctions: Update to 1.6.0. 
* gnu/packages/julia-xyz.scm (julia-specialfunctions): Update to 1.6.0.
[propagated-inputs]: Add julia-logexpfunctions.
 2021-07-29 14:43:30 +03:00
Efraim Flashner
226af89e58
gnu: julia-fuzzycompletions: Adjust test suite for julia-1.6. 
* gnu/packages/julia-xyz.scm (julia-fuzzycompletions)[arguments]: Add
phase to skip failing test.
 2021-07-29 14:43:30 +03:00
Efraim Flashner
d09223edab
gnu: julia-rotations: Update to 1.0.2-1.b599102. 
* gnu/packages/julia-xyz.scm (julia-rotations): Update to 1.0.2-1.b599102.
 2021-07-29 14:43:30 +03:00
Efraim Flashner
1cc36f5efe
gnu: julia-nnlib: Update to 0.7.25. 
* gnu/packages/julia-xyz.scm (julia-nnlib): Update to 0.7.25.
[arguments]: Skip tests.
 2021-07-29 14:43:30 +03:00
Efraim Flashner
7975a64b6d
gnu: julia-tracker: Patch for julia-1.6. 
* gnu/packages/julia-xyz.scm (julia-tracker)[source]: Add patch.
* gnu/packages/patches/julia-tracker-16-compat.patch: New file.
* gnu/local.mk (dist_patch_DATA): Register it.
 2021-07-29 14:43:27 +03:00
Nicolas Goaziou
74dad2c75a
gnu: python-pikepdf: Update to 2.16.1. 
* gnu/packages/python-xyz.scm (python-pikepdf): Update to 2.16.1.
 2021-07-29 10:28:08 +02:00
Nicolas Goaziou
01cc360cf5
gnu: emacs-csharp-mode: Update to 0.12.0. 
* gnu/packages/emacs-xyz.scm (emacs-csharp-mode): Update to 0.12.0.
 2021-07-29 10:26:31 +02:00
Nicolas Goaziou
3ef3f791f9
gnu: emacs-nswbuff: Update to 1.3. 
* gnu/packages/emacs-xyz.scm (emacs-nswbuff): Update to 1.3.
 2021-07-29 10:24:44 +02:00
Nicolas Goaziou
e4e9037402
gnu: snap: Update to 6.9.0. 
* gnu/packages/education.scm (snap): Update to 6.9.0.
 2021-07-29 10:21:49 +02:00
Nicolas Goaziou
87b409d7e9
gnu: mame: Update to 0.234. 
* gnu/packages/emulators.scm (mame): Update to 0.234.
 2021-07-29 10:14:29 +02:00
Nicolas Goaziou
3a59d722c1
gnu: emacs-solaire-mode: Update to 2.0.2. 
* gnu/packages/emacs-xyz.scm (emacs-solaire-mode): Update to 2.0.2.
 2021-07-29 09:44:57 +02:00
Nicolas Goaziou
79a99af640
gnu: emacs-org-fragtog: Update to 0.3.3. 
* gnu/packages/emacs-xyz.scm (emacs-org-fragtog): Update to 0.3.3.
 2021-07-29 09:44:11 +02:00
Ron Nazarov via Guix-patches via
59dd6dfb91
gnu: Add emacs-nasm-mode. 
* gnu/packages/emacs-xyz.scm (emacs-nasm-mode): New variable.

Signed-off-by: Nicolas Goaziou <mail@nicolasgoaziou.fr>
 2021-07-29 09:40:08 +02:00
Leo Famulari
7af47b876a
gnu: linux-libre 4.4: Update to 4.4.277. 
* gnu/packages/linux.scm (linux-libre-4.4-version): Update to 4.4.277.
(linux-libre-4.4-pristine-source): Update hash.
 2021-07-28 17:18:04 -04:00
Leo Famulari
7c31c37676
gnu: linux-libre 4.9: Update to 4.9.277. 
* gnu/packages/linux.scm (linux-libre-4.9-version): Update to 4.9.277.
(linux-libre-4.9-pristine-source): Update hash.
 2021-07-28 17:18:04 -04:00
Leo Famulari
f836b47eba
gnu: linux-libre 4.14: Update to 4.14.241. 
* gnu/packages/linux.scm (linux-libre-4.14-version): Update to 4.14.241.
(linux-libre-4.14-pristine-source): Update hash.
 2021-07-28 17:18:04 -04:00
Leo Famulari
278fc1e85d
gnu: linux-libre 4.19: Update to 4.19.199. 
* gnu/packages/linux.scm (linux-libre-4.19-version): Update to 4.19.199.
(linux-libre-4.19-pristine-source): Update hash.
 2021-07-28 17:18:03 -04:00
Leo Famulari
7400d3ebbe
gnu: linux-libre 5.4: Update to 5.4.136. 
* gnu/packages/linux.scm (linux-libre-5.4-version): Update to 5.4.136.
(linux-libre-5.4-pristine-source): Update hash.
 2021-07-28 17:18:03 -04:00
Leo Famulari
a137816cc7
gnu: linux-libre 5.10: Update to 5.10.54. 
* gnu/packages/linux.scm (linux-libre-5.10-version): Update to 5.10.54.
(linux-libre-5.10-pristine-source): Update hash.
 2021-07-28 17:18:03 -04:00
Leo Famulari
4f108e4e5c
gnu: linux-libre: Update to 5.13.6. 
* gnu/packages/linux.scm (linux-libre-5.12-version, deblob-scripts-5.12
linux-libre-5.12-pristine-source, linux-libre-5.12-source,
linux-libre-headers-5.12, linux-libre-5.12): Remove variables.
(linux-libre-version, linux-libre-pristine-source, linux-libre-source,
linux-libre): Update to the 5.13 kernel series.
(linux-libre-with-bpf): Update to 5.13 kernel series.
* gnu/packages/aux-files/linux-libre/5.12-arm.conf,
gnu/packages/aux-files/linux-libre/5.12-arm64.conf,
gnu/packages/aux-files/linux-libre/5.12-i686.conf,
gnu/packages/aux-files/linux-libre/5.12-x86_64.conf: Delete files.
* Makefile.am (AUX_FILES): Remove them.
 2021-07-28 17:18:02 -04:00
Ricardo Wurmus
a32241fcda
gnu: r-catalyst: Update to 1.16.2. 
* gnu/packages/bioconductor.scm (r-catalyst): Update to 1.16.2.
 2021-07-28 22:26:56 +02:00
Ricardo Wurmus
9d7eb480f8
gnu: r-mixomics: Update to 6.16.2. 
* gnu/packages/bioconductor.scm (r-mixomics): Update to 6.16.2.
 2021-07-28 22:26:56 +02:00
Ricardo Wurmus
d0d3637c92
gnu: r-rsubread: Update to 2.6.4. 
* gnu/packages/bioconductor.scm (r-rsubread): Update to 2.6.4.
 2021-07-28 22:26:56 +02:00
Ricardo Wurmus
8d9626dd7d
gnu: r-annotatr: Update to 1.18.1. 
* gnu/packages/bioconductor.scm (r-annotatr): Update to 1.18.1.
 2021-07-28 22:26:56 +02:00
Ricardo Wurmus
73fa220b43
gnu: r-motifbreakr: Update to 2.6.1. 
* gnu/packages/bioconductor.scm (r-motifbreakr): Update to 2.6.1.
 2021-07-28 22:26:55 +02:00
Ricardo Wurmus
336b110f69
gnu: r-scone: Update to 1.16.1. 
* gnu/packages/bioconductor.scm (r-scone): Update to 1.16.1.
 2021-07-28 22:26:55 +02:00
Ricardo Wurmus
fd0851ee97
gnu: r-chippeakanno: Update to 3.26.2. 
* gnu/packages/bioconductor.scm (r-chippeakanno): Update to 3.26.2.
 2021-07-28 22:26:55 +02:00
Ricardo Wurmus
acc62073be
gnu: r-ensembldb: Update to 2.16.3. 
* gnu/packages/bioconductor.scm (r-ensembldb): Update to 2.16.3.
 2021-07-28 22:26:55 +02:00
Ricardo Wurmus
e2ca38e611
gnu: r-ranger: Update to 0.13.1. 
* gnu/packages/statistics.scm (r-ranger): Update to 0.13.1.
 2021-07-28 22:26:55 +02:00
Ricardo Wurmus
8934c48d41
gnu: r-blob: Update to 1.2.2. 
* gnu/packages/statistics.scm (r-blob): Update to 1.2.2.
 2021-07-28 22:26:55 +02:00
Ricardo Wurmus
a30bcf6600
gnu: r-rcpparmadillo: Update to 0.10.6.0.0. 
* gnu/packages/statistics.scm (r-rcpparmadillo): Update to 0.10.6.0.0.
 2021-07-28 22:26:55 +02:00
Ricardo Wurmus
92c837f426
gnu: r-readr: Update to 2.0.0. 
* gnu/packages/statistics.scm (r-readr): Update to 2.0.0.
[propagated-inputs]: Remove r-bh; add r-tzdb and r-vroom.
 2021-07-28 22:26:55 +02:00
Ricardo Wurmus
8c7483196a
gnu: r-tibble: Update to 3.1.3. 
* gnu/packages/statistics.scm (r-tibble): Update to 3.1.3.
 2021-07-28 22:26:55 +02:00
Ricardo Wurmus
ee2bae9385
gnu: r-pryr: Update to 0.1.5. 
* gnu/packages/statistics.scm (r-pryr): Update to 0.1.5.
[propagated-inputs]: Add r-lobstr and r-rcpp.
[native-inputs]: Remove r-rcpp.
 2021-07-28 22:26:55 +02:00
Ricardo Wurmus
5fb96b16a4
gnu: r-stringi: Update to 1.7.3. 
* gnu/packages/statistics.scm (r-stringi): Update to 1.7.3.
 2021-07-28 22:26:55 +02:00
Ricardo Wurmus
b33be7b772
gnu: r-vroom: Update to 1.5.3. 
* gnu/packages/cran.scm (r-vroom): Update to 1.5.3.
 2021-07-28 22:26:55 +02:00
Ricardo Wurmus
7f244ccacb
gnu: r-tzdb: Update to 0.1.2. 
* gnu/packages/cran.scm (r-tzdb): Update to 0.1.2.
 2021-07-28 22:26:55 +02:00
Ricardo Wurmus
42085a60bf
gnu: r-readtext: Update to 0.81. 
* gnu/packages/cran.scm (r-readtext): Update to 0.81.
 2021-07-28 22:26:55 +02:00
Ricardo Wurmus
36e993e302
gnu: r-mlr3misc: Update to 0.9.3. 
* gnu/packages/cran.scm (r-mlr3misc): Update to 0.9.3.
[propagated-inputs]: Add r-digest.
 2021-07-28 22:26:54 +02:00
Ricardo Wurmus
0f5b85ba51
gnu: r-lpme: Update to 1.1.2. 
* gnu/packages/cran.scm (r-lpme): Update to 1.1.2.
 2021-07-28 22:26:54 +02:00
Ricardo Wurmus
6833c0086c
gnu: r-phangorn: Update to 2.7.1. 
* gnu/packages/cran.scm (r-phangorn): Update to 2.7.1.
 2021-07-28 22:26:54 +02:00
Ricardo Wurmus
1b06cf529a
gnu: r-modeldata: Update to 0.1.1. 
* gnu/packages/cran.scm (r-modeldata): Update to 0.1.1.
 2021-07-28 22:26:54 +02:00
Ricardo Wurmus
5fe6129c66
gnu: r-parsnip: Update to 0.1.7. 
* gnu/packages/cran.scm (r-parsnip): Update to 0.1.7.
[propagated-inputs]: Add r-hardhat.
 2021-07-28 22:26:54 +02:00
Ricardo Wurmus
5ceaaeca08
gnu: r-workflowsets: Update to 0.1.0. 
* gnu/packages/cran.scm (r-workflowsets): Update to 0.1.0.
[propagated-inputs]: Add r-hardhat and r-lifecycle.
 2021-07-28 22:26:54 +02:00
Ricardo Wurmus
ff971f4add
gnu: r-tune: Update to 0.1.6. 
* gnu/packages/cran.scm (r-tune): Update to 0.1.6.
[propagated-inputs]: Add r-hardhat, r-lifecycle, and r-withr.
 2021-07-28 22:26:54 +02:00
Ricardo Wurmus
260d29bf76
gnu: r-workflows: Update to 0.2.3. 
* gnu/packages/cran.scm (r-workflows): Update to 0.2.3.
[propagated-inputs]: Add r-lifecycle.
 2021-07-28 22:26:54 +02:00
Ricardo Wurmus
5fa0448590
gnu: r-spatstat-linnet: Update to 2.3-0. 
* gnu/packages/cran.scm (r-spatstat-linnet): Update to 2.3-0.
[propagated-inputs]: Add r-spatstat-sparse.
 2021-07-28 22:26:54 +02:00
Ricardo Wurmus
d3b8b6703c
gnu: r-spatstat-core: Update to 2.3-0. 
* gnu/packages/cran.scm (r-spatstat-core): Update to 2.3-0.
 2021-07-28 22:26:53 +02:00
Ricardo Wurmus
9a5901e0ad
gnu: r-spatstat-geom: Update to 2.2-2. 
* gnu/packages/cran.scm (r-spatstat-geom): Update to 2.2-2.
 2021-07-28 22:26:53 +02:00
Ricardo Wurmus
7b41c93061
gnu: r-hardhat: Update to 0.1.6. 
* gnu/packages/cran.scm (r-hardhat): Update to 0.1.6.
 2021-07-28 22:26:53 +02:00
Ricardo Wurmus
35f9a754d8
gnu: r-isoband: Update to 0.2.5. 
* gnu/packages/cran.scm (r-isoband): Update to 0.2.5.
 2021-07-28 22:26:53 +02:00
Ricardo Wurmus
49979bf735
gnu: r-seewave: Update to 2.1.8. 
* gnu/packages/cran.scm (r-seewave): Update to 2.1.8.
 2021-07-28 22:26:53 +02:00
Ricardo Wurmus
03e4676138
gnu: r-showtext: Update to 0.9-3. 
* gnu/packages/cran.scm (r-showtext): Update to 0.9-3.
 2021-07-28 22:26:53 +02:00
Ricardo Wurmus
73871946a1
gnu: r-sysfonts: Update to 0.8.4. 
* gnu/packages/cran.scm (r-sysfonts): Update to 0.8.4.
 2021-07-28 22:26:53 +02:00
Ricardo Wurmus
c1919dacf4
gnu: r-styler: Update to 1.5.1. 
* gnu/packages/cran.scm (r-styler): Update to 1.5.1.
 2021-07-28 22:26:53 +02:00
Ricardo Wurmus
b21351870a
gnu: r-rttf2pt1: Update to 1.3.9. 
* gnu/packages/cran.scm (r-rttf2pt1): Update to 1.3.9.
 2021-07-28 22:26:53 +02:00
Ricardo Wurmus
d5e5809b94
gnu: r-adegenet: Update to 2.1.4. 
* gnu/packages/cran.scm (r-adegenet): Update to 2.1.4.
 2021-07-28 22:26:52 +02:00
Ricardo Wurmus
c84a2c1209
gnu: r-wk: Update to 0.5.0. 
* gnu/packages/cran.scm (r-wk): Update to 0.5.0.
 2021-07-28 22:26:52 +02:00
Ricardo Wurmus
d57de3da9c
gnu: r-compositions: Update to 2.0-2. 
* gnu/packages/cran.scm (r-compositions): Update to 2.0-2.
 2021-07-28 22:26:52 +02:00
Ricardo Wurmus
f04f40880c
gnu: r-parallelly: Update to 1.27.0. 
* gnu/packages/cran.scm (r-parallelly): Update to 1.27.0.
 2021-07-28 22:26:52 +02:00
Ricardo Wurmus
a6044a7573
gnu: r-rgl: Update to 0.107.10. 
* gnu/packages/cran.scm (r-rgl): Update to 0.107.10.
[propagated-inputs]: Remove r-manipulatewidget and r-shiny.
 2021-07-28 22:26:52 +02:00
Ricardo Wurmus
c210531551
gnu: r-afex: Update to 1.0-1. 
* gnu/packages/cran.scm (r-afex): Update to 1.0-1.
 2021-07-28 22:26:52 +02:00
Ricardo Wurmus
40648a1e20
gnu: r-credentials: Update to 1.3.1. 
* gnu/packages/cran.scm (r-credentials): Update to 1.3.1.
 2021-07-28 22:26:52 +02:00
Ricardo Wurmus
9e56bb33d5
gnu: r-sjplot: Update to 2.8.9. 
* gnu/packages/cran.scm (r-sjplot): Update to 2.8.9.
[propagated-inputs]: Add r-datawizard.
 2021-07-28 22:26:52 +02:00
Ricardo Wurmus
ce8738a194
gnu: r-performance: Update to 0.7.3. 
* gnu/packages/cran.scm (r-performance): Update to 0.7.3.
[propagated-inputs]: Add r-datawizard.
 2021-07-28 22:26:52 +02:00
Ricardo Wurmus
7a8081f23e
gnu: r-bayestestr: Update to 0.10.5. 
* gnu/packages/cran.scm (r-bayestestr): Update to 0.10.5.
[propagated-inputs]: Add r-datawizard.
 2021-07-28 22:26:51 +02:00
Ricardo Wurmus
4590f8b338
gnu: r-glmmtmb: Update to 1.1.2. 
* gnu/packages/cran.scm (r-glmmtmb): Update to 1.1.2.
 2021-07-28 22:26:51 +02:00
Ricardo Wurmus
0af4e95b33
gnu: r-survey: Update to 4.1-1. 
* gnu/packages/cran.scm (r-survey): Update to 4.1-1.
 2021-07-28 22:26:51 +02:00
Ricardo Wurmus
dce011239f
gnu: r-doby: Update to 4.6.11. 
* gnu/packages/cran.scm (r-doby): Update to 4.6.11.
 2021-07-28 22:26:23 +02:00
Ricardo Wurmus
c633e5f40a
gnu: r-flextable: Update to 0.6.7. 
* gnu/packages/cran.scm (r-flextable): Update to 0.6.7.
 2021-07-28 22:26:23 +02:00
Ricardo Wurmus
8816d7e130
gnu: r-officer: Update to 0.3.19. 
* gnu/packages/cran.scm (r-officer): Update to 0.3.19.
 2021-07-28 22:26:23 +02:00
Ricardo Wurmus
3bc970802b
gnu: r-renv: Update to 0.14.0. 
* gnu/packages/cran.scm (r-renv): Update to 0.14.0.
 2021-07-28 22:26:23 +02:00
Ricardo Wurmus
db54fbe2b1
gnu: r-rastervis: Update to 0.50.3. 
* gnu/packages/cran.scm (r-rastervis): Update to 0.50.3.
 2021-07-28 22:26:23 +02:00
Ricardo Wurmus
1ba8c81f97
gnu: r-vim: Update to 6.1.1. 
* gnu/packages/cran.scm (r-vim): Update to 6.1.1.
 2021-07-28 22:26:23 +02:00
Ricardo Wurmus
76211cbc27
gnu: r-utf8: Update to 1.2.2. 
* gnu/packages/cran.scm (r-utf8): Update to 1.2.2.
[native-inputs]: Add r-rmarkdown.
 2021-07-28 22:26:23 +02:00
Ricardo Wurmus
165ecfb477
gnu: r-cli: Update to 3.0.1. 
* gnu/packages/cran.scm (r-cli): Update to 3.0.1.
 2021-07-28 22:26:23 +02:00
Ricardo Wurmus
57f04c64bc
gnu: r-laplacesdemon: Update to 16.1.6. 
* gnu/packages/cran.scm (r-laplacesdemon): Update to 16.1.6.
 2021-07-28 22:26:23 +02:00
Ricardo Wurmus
efaa549993
gnu: r-fastmatch: Update to 1.1-3. 
* gnu/packages/cran.scm (r-fastmatch): Update to 1.1-3.
 2021-07-28 22:26:23 +02:00
Ricardo Wurmus
e1a57fcdfa
gnu: r-jpeg: Update to 0.1-9. 
* gnu/packages/cran.scm (r-jpeg): Update to 0.1-9.
 2021-07-28 22:26:23 +02:00
Ricardo Wurmus
16c3ebaf14
gnu: r-rvest: Update to 1.0.1. 
* gnu/packages/cran.scm (r-rvest): Update to 1.0.1.
 2021-07-28 22:26:23 +02:00
Ricardo Wurmus
24ad9180fe
gnu: r-ggpp: Update to 0.4.1. 
* gnu/packages/cran.scm (r-ggpp): Update to 0.4.1.
[propagated-inputs]: Remove r-generics and r-plyr.
 2021-07-28 22:26:22 +02:00
Ricardo Wurmus
55a8d2f369
gnu: r-googlesheets4: Update to 1.0.0. 
* gnu/packages/cran.scm (r-googlesheets4): Update to 1.0.0.
[propagated-inputs]: Remove r-lifecycle; add r-cli.
 2021-07-28 22:26:22 +02:00
Ricardo Wurmus
6e27f274b2
gnu: Add r-lobstr. 
* gnu/packages/cran.scm (r-lobstr): New variable.
 2021-07-28 22:26:22 +02:00
Ricardo Wurmus
f39deacd21
gnu: Add r-datawizard. 
* gnu/packages/cran.scm (r-datawizard): New variable.
 2021-07-28 22:26:22 +02:00
Lars-Dominik Braun
9ac9bc6051
gnu: r-with-tests: Hardcode path to coreutils’ rm 
When running R in a container like this

	guix environment --no-cwd -C --ad-hoc r-minimal -- Rscript -e 'Sys.timezone()'

it would print an additional line

	sh: rm: command not found

before exiting.

* gnu/packages/statistics.scm (r-with-tests) [#:phases]: Add substitute*
to patch call to `rm` and rename phase to reflect what it does now.
 2021-07-28 22:26:19 +02:00
Ricardo Wurmus
042b6971d7
gnu: Add python-modin. 
* gnu/packages/python-science.scm (python-modin): New variable.
 2021-07-28 20:31:06 +02:00
Ricardo Wurmus
251bfbcfaa
gnu: Add python-distributed. 
* gnu/packages/python-science.scm (python-distributed): New variable.
 2021-07-28 20:31:06 +02:00
Ricardo Wurmus
41431282e2
gnu: Add python-zict. 
* gnu/packages/python-xyz.scm (python-zict): New variable.
 2021-07-28 20:31:06 +02:00
Ricardo Wurmus
45ee09dc96
gnu: Add python-heapdict. 
* gnu/packages/python-xyz.scm (python-heapdict): New variable.
 2021-07-28 20:31:06 +02:00
Ricardo Wurmus
532cfc5bd2
gnu: python-pyarrow: Fix parquet support. 
Co-authored-by: Phil Beadling <phil@beadling.co.uk>.

* gnu/packages/databases.scm (python-pyarrow)[arguments]: Add phases
patch-cmake-variables, patch-parquet-library, and set-PYARROW_WITH_PARQUET.
[propagated-inputs]: Add "include" output of apache-arrow package.
 2021-07-28 20:31:06 +02:00
Ricardo Wurmus
3a150e9f12
gnu: python-pandas: Update to 1.3.0. 
* gnu/packages/python-science.scm (python-pandas): Update to 1.3.0.
[arguments]: Adjust check phase.
 2021-07-28 20:31:06 +02:00
Ricardo Wurmus
242221e380
gnu: python-dask: Update to 2021.7.1. 
* gnu/packages/python-xyz.scm (python-dask): Update to 2021.7.1.
[arguments]: Do not skip test_shuffle.
 2021-07-28 20:31:05 +02:00
Ricardo Wurmus
f01d4b197a
gnu: python-partd: Update to 1.2.0. 
* gnu/packages/python-xyz.scm (python-partd): Update to 1.2.0.
 2021-07-28 20:31:05 +02:00
Ricardo Wurmus
27c6cab2c6
gnu: python-numexpr: Update to 2.7.3. 
* gnu/packages/python-xyz.scm (python-numexpr): Update to 2.7.3.
 2021-07-28 20:31:05 +02:00
Ricardo Wurmus
145296dbcb
gnu: python-cloudpickle: Update to 1.6.0. 
* gnu/packages/python-xyz.scm (python-cloudpickle-testpkg): New variable.
(python-cloudpickle): Update to 1.6.0; inherit from
python-cloudpickle-testpkg.
[source]: Fetch from git repository.
[native-inputs]: Add python-cloudpickle-testpkg; replace python-tornado with
python-tornado-6.
 2021-07-28 20:31:05 +02:00
Ricardo Wurmus
2422fbf6b2
gnu: python2-cloudpickle: Override version, source, and native-inputs. 
* gnu/packages/python-xyz.scm (python2-cloudpickle)[version]: Explicitly set
to 1.3.0.
[source]: Copy from base package.
[native-inputs]: Do not inherit; copy.
 2021-07-28 20:31:05 +02:00
Ricardo Wurmus
c486a61c27
gnu: cmake: Update to 3.21.1. 
* gnu/packages/cmake.scm (cmake): Update to 3.21.1.
[arguments]: Skip one more test.
 2021-07-28 20:31:05 +02:00
Efraim Flashner
c20c9e1685
gnu: julia-distances: Update flakey tests. 
* gnu/packages/julia-xyz.scm (julia-distances)[arguments]: Adjust the
custom 'skip-flakey-tests phase.
 2021-07-28 16:05:33 +03:00
Efraim Flashner
fcc900bd52
gnu: julia-docstringextensions: Skip tests. 
* gnu/packages/julia-xyz.scm (julia-docstringextensions)[arguments]:
Skip tests.
 2021-07-28 16:05:33 +03:00
Efraim Flashner
21747ffa87
gnu: julia-datavalues: Skip tests. 
* gnu/packages/julia-xyz.scm (julia-datavalues)[arguments]: Skip tests.
 2021-07-28 16:05:33 +03:00
Efraim Flashner
8832df0412
gnu: julia-compat: Update to 3.31.0. 
* gnu/packages/julia-xyz.scm (julia-compat): Update to 3.31.0.
 2021-07-28 16:05:33 +03:00
Efraim Flashner
a8977845cd
gnu: global: Update to 6.6.7. 
* gnu/packages/code.scm (global): Update to 6.6.7.
 2021-07-28 16:05:33 +03:00
Efraim Flashner
cbee534391
gnu: julia-jllwrappers: Add julia-preferences. 
* gnu/packages/julia-jll.scm (julia-jllwrappers)[propagated-inputs]: Add
julia-preferences.
 2021-07-28 16:05:33 +03:00
Efraim Flashner
f7eaa69dc2
gnu: Add julia-preferences. 
* gnu/packages/julia-xyz.scm (julia-preferences): New variable.
 2021-07-28 16:05:33 +03:00
Efraim Flashner
6886c4960d
gnu: julia: Skip tests on aarch64-linux. 
* gnu/packages/julia.scm (julia)[arguments]: Skip tests when building
for aarch64-linux.
 2021-07-28 16:05:32 +03:00
Efraim Flashner
cc85829fb9
gnu: llvm-julia: Overide build-type. 
* gnu/packages/julia.scm (llvm-julia)[arguments]: Move CMAKE_BUILD_TYPE
config from configure-flags to build-type.
 2021-07-28 16:05:32 +03:00
Efraim Flashner
6adea67cb0
gnu: libuv-julia: Clean up package definition. 
* gnu/packages/julia.scm (libuv-julia)[source]: Use git-file-name.
[build-system]: Remove field.
[arguments]: Remove field.
 2021-07-28 16:05:32 +03:00
Jean-Baptiste Volatier
55bb794248
gnu: julia: Update to 1.6.1. 
* gnu/packages/julia.scm (julia): Update to 1.6.1.
[arguments]: Adjust custom 'prepare-deps phase. Remove custom
'fix-precompile phase. Add new 'shared-objects-path phase to fix paths
to shared objects. Add new 'adjust-test-suite phase to adjust for
differences in bundled vs packaged libraries. Adjust custom
'disable-broken-tests phase for new version. Add symlinks to libs in
'symlink-libraries phase. In make-flags add more finegrained compilation
targets for x86_64-linux. Update make-flags for changes since last
version.
[inputs]: Add nghttp2:lib, gfortran:lib, curl-ssh. Remove arpack-ng,
curl. Sort alphabetically.
[native-inputs]: Add nss-certs. Sort alphabetically.

(libuv-julia): Update to newer revision.
(libunwind-julia)[source]: Add new patch.
(llvm-julia): Inherit from llvm-11.
[source]: Update patch list.
[arguments]: Apply minority of the Julia specific patches in
'julia-patches phase.
[inputs]: Add julia patches.

Co-Authored-By: Nicolò Balzarotti <nicolo@nixo.xyz>.
Co-Authored-By: zimoun <zimon.toutoune@gmail.com>.
Co-Authored-By: Efraim Flashner <efraim@flashner.co.il>.
 2021-07-28 16:05:32 +03:00
Jean-Baptiste Volatier
0faf5f1dd6
gnu: Add curl-ssh. 
* gnu/packages/curl.scm (curl-ssh): New hidden package.

Signed-off-by: Efraim Flashner <efraim@flashner.co.il>
 2021-07-28 16:05:32 +03:00
Jean-Baptiste Volatier
2d4fa647b7
gnu: julia-staticarrays: Update to 1.2.5 
* gnu/packages/julia-xyz.scm (julia-staticarrays): Update to 1.2.5

Signed-off-by: Efraim Flashner <efraim@flashner.co.il>
 2021-07-28 16:05:32 +03:00
Jean-Baptiste Volatier
1978d716a9
gnu: openlibm: Fix cross-compiling. 
* gnu/packages/maths.scm (openlibm)[arguments]: Add configure-flag to
use cc-for-target.

Signed-off-by: Efraim Flashner <efraim@flashner.co.il>
 2021-07-28 16:05:31 +03:00
Jean-Baptiste Volatier
4709b74bc8
gnu: openlibm: Update to 0.7.4. 
* gnu/packages/maths.scm (openlibm): Update to 0.7.4.

Signed-off-by: Efraim Flashner <efraim@flashner.co.il>
 2021-07-28 16:05:31 +03:00
Jean-Baptiste Volatier
7db9573e86
gnu: Add pcre2-10.36. 
* gnu/packages/pcre.scm (pcre2-10.36): New variable.

Co-Authored-By: zimoun <zimoun.toutoune@gmail.com>.
Signed-off-by: Efraim Flashner <efraim@flashner.co.il>
 2021-07-28 16:05:31 +03:00
Jean-Baptiste Volatier
2459cff9ae
gnu: Add utf8proc-2.6.1. 
* gnu/packages/textutils.scm (utf8proc-2.6.1): New variable.

Co-Authored-By: zimoun <zimon.toutoune@gmail.com>.
Signed-off-by: Efraim Flashner <efraim@flashner.co.il>
 2021-07-28 16:05:31 +03:00
Franz Josef
7d93b21ab1
gnu: glibc-for-bootstrap: Update patch. 
There was/is something funny going on with the bootstrap glibc. The
symbol for posix_spawnp points to getopt_r. Which in turn leads to a
lot of crashed in tests later on. I extended the glibc-bootstrap patch
to work around this bug.

* gnu/packages/patches/glibc-bootstrap-system.patch: Adjust patch to
work correctly with new architectures.

Signed-off-by: Efraim Flashner <efraim@flashner.co.il>
 2021-07-28 16:05:31 +03:00
Efraim Flashner
8afd85538a
gnu: global: Fix lisp install dir. 
* gnu/packages/code.scm (global)[arguments]: Adjust custom 'post-install
phase to move emacs files to the correct directory.
 2021-07-28 16:05:31 +03:00
Nicolas Goaziou
b07c7f0da6
gnu: python-pikepdf: Update to 2.16.0. 
* gnu/packages/python-xyz.scm (python-pikepdf): Update to 2.16.0.
 2021-07-27 21:35:52 +02:00
cage
d0ec73907c
gnu: telescope: Update to 0.4.1. 
* gnu/packages/web-browsers.scm (telescope): Update to 0.4.1.

Signed-off-by: Nicolas Goaziou <mail@nicolasgoaziou.fr>
 2021-07-27 19:36:22 +02:00
Alexandr Vityazev
f87f60a8b5
gnu: emacs-link-hint: Update to 0.1-3.9fbf196. 
* gnu/packages/emacs-xyz.scm (emacs-link-hint): Update to 0.1-3.9fbf196.

Signed-off-by: Nicolas Goaziou <mail@nicolasgoaziou.fr>
 2021-07-27 19:10:28 +02:00
Simon South
f62c140f47
gnu: emacs-elpher: Update to 2.10.3. 
* gnu/packages/emacs-xyz.scm (emacs-elpher): Update to 2.10.3.

Signed-off-by: Nicolas Goaziou <mail@nicolasgoaziou.fr>
 2021-07-27 19:10:28 +02:00
Morgan Smith
4c4cf3d692
gnu: emacs-typit: Update to 0.2.1-2.fa125bf. 
* gnu/packages/emacs-xyz.scm (emacs-typit): Update to 0.2.1-2.fa125bf.

Signed-off-by: Nicolas Goaziou <mail@nicolasgoaziou.fr>
 2021-07-27 19:10:28 +02:00
Morgan Smith
143d21fa95
gnu: emacs-typit: Fix dictionary location. 
Move the dictionary directory to be next to the lisp files, where it is
expected to be.

* gnu/packages/emacs-xyz.scm (emacs-typit)[arguments]
<#:phases>: Remove install-dictionaries phase.
<#:include>: Include dictionaries.

Signed-off-by: Nicolas Goaziou <mail@nicolasgoaziou.fr>
 2021-07-27 19:10:27 +02:00
Vinicius Monego
3968134a4d
gnu: emacs-org-roam-bibtex: Update to 0.6.0. 
* gnu/packages/emacs-xyz.scm (emacs-org-roam-bibtex): Update to 0.6.0.

Signed-off-by: Nicolas Goaziou <mail@nicolasgoaziou.fr>
 2021-07-27 19:10:27 +02:00
Vinicius Monego
3c76399745
gnu: emacs-org-roam: Update to 2.0.0. 
* gnu/packages/emacs-xyz.scm (emacs-org-roam): Update to 2.0.0.
[propagated-inputs]: Add emacs-magit.

Signed-off-by: Nicolas Goaziou <mail@nicolasgoaziou.fr>
 2021-07-27 19:10:27 +02:00
Vinicius Monego
157f2f7f03
gnu: Add emacs-org-cv. 
* gnu/packages/emacs-xyz.scm (emacs-org-cv): New variable.

Signed-off-by: Nicolas Goaziou <mail@nicolasgoaziou.fr>
 2021-07-27 19:10:26 +02:00
Ivan Gankevich
8cfd9ef831
gnu: mesa-opencl-icd: Use absolute path for the library. 
* gnu/packages/gl.scm (mesa-opencl-icd): Use absolute path for OpenCL
  platform library in "mesa.icd" file.  With this patch setting
  LD_LIBRARY_PATH=$LIBRARY_PATH is no longer needed to run OpenCL
  applications.

Signed-off-by: Guillaume Le Vaillant <glv@posteo.net>
 2021-07-27 18:36:34 +02:00