Ricardo Wurmus
6962b32a2b
gnu: python-pyjanitor: Update to 0.27.0.
...
* gnu/packages/python-science.scm (python-pyjanitor): Update to 0.27.0.
[arguments]: Disable a few more tests; add phase 'pandas-compat.
Change-Id: Ia8891971a687342166f30ded11f9e341a208d95e
2024-05-05 22:38:16 +02:00
Ricardo Wurmus
297e88edff
gnu: python-xarray: Disable tests that are known to fail.
...
* gnu/packages/python-science.scm (python-xarray)[arguments]: Disable two
tests.
Change-Id: I70954173e0aca5a377cf19476e9390a97febadc7
2024-05-05 22:38:15 +02:00
Ricardo Wurmus
74dd2def7f
gnu: python-pandas: Default to version 2.x.
...
* gnu/packages/python-science.scm (python-pandas): Define as alias for
python-pandas-2; rename existing definition to...
(python-pandas-1): ...this new variable.
Change-Id: If359e3b2d42c683d7d0152b1757bbc5a979c999b
2024-05-05 22:38:15 +02:00
Ricardo Wurmus
d85a19a29c
gnu: python-scikit-opt: Add missing input.
...
* gnu/packages/python-science.scm (python-scikit-opt)[propagated-inputs]: Add
python-pytorch.
Change-Id: I037cc43bedeaebb05bf038c0bca72919f8c27c40
2024-05-05 22:38:15 +02:00
Marco Baggio
da18b8620f
gnu: Add python-cvxpy.
...
* gnu/packages/python-science.scm (python-cvxpy): New variable.
Co-authored-by: Ricardo Wurmus <rekado@elephly.net>
Change-Id: I440ab3768cbc4e78364dc31cf9484effd9670f49
2024-05-05 22:38:15 +02:00
Marco Baggio
2c0cf38f04
gnu: Add python-ecos.
...
* gnu/packages/python-science.scm (python-ecos): New variable.
Co-authored-by: Ricardo Wurmus <rekado@elephly.net>
Change-Id: I83d9b746f5f3563f417efc5d18911f2eb04f201c
2024-05-05 22:38:15 +02:00
Marco Baggio
a0971243bc
gnu: Add python-osqp.
...
* gnu/packages/python-science.scm (python-osqp): New variable.
Co-authored-by: Ricardo Wurmus <rekado@elephly.net>
Change-Id: Id6f1665505469fd6543046636b82d0730b319df3
2024-05-05 22:38:15 +02:00
Marco Baggio
d051ef0913
gnu: Add python-qdldl.
...
* gnu/packages/python-science.scm (python-qdldl): New variable.
Co-authored-by: Ricardo Wurmus <rekado@elephly.net>
Change-Id: I523ecb2292c9b514b548e2130d0d43bb77317b00
2024-05-05 22:38:15 +02:00
Marco Baggio
d470a9aa54
gnu: Add python-scs.
...
* gnu/packages/python-science.scm (python-scs): New variable.
Co-authored-by: Ricardo Wurmus <rekado@elephly.net>
Change-Id: I6c5ecdac4b558aab4b8ee396dff1dfc9cdec07f0
2024-05-05 22:38:15 +02:00
Marco Baggio
670dcc8e4c
gnu: Add python-fastcluster.
...
* gnu/packages/python-science.scm (python-fastcluster): New variable.
Co-authored-by: Ricardo Wurmus <rekado@elephly.net>
Change-Id: Ifc5229a4d00f581eb358a1f41fc3479fd1c33c2e
2024-05-05 22:38:15 +02:00
Ricardo Wurmus
c4eccd2066
gnu: Add python-clarabel.
...
* gnu/packages/python-science.scm (python-clarabel): New variable.
Change-Id: I28459162460ca9bf9e9557122f611c677afadc27
2024-05-05 22:38:15 +02:00
Ricardo Wurmus
c9d9b9572b
gnu: Add python-xarray-schema.
...
* gnu/packages/python-science.scm (python-xarray-schema): New variable.
Change-Id: I4ca650f2c2872698fc22392add169f44b9e2e035
2024-05-05 22:38:15 +02:00
Ricardo Wurmus
061885faec
gnu: python-xarray-datatree: Add missing input.
...
* gnu/packages/python-science.scm (python-xarray-datatree)[native-inputs]:
Add python-setuptools-scm.
Change-Id: I86a7280ba687385edb15f30dae1a20e3811a0beb
2024-05-05 22:38:15 +02:00
Sharlatan Hellseher
8cea282efe
gnu: Add python-supersmoother.
...
* gnu/packages/python-science.scm (python-supersmoother): New variable.
Change-Id: I8fb43d746757014e3b773c07458b777b893adb4a
2024-04-30 21:36:10 +01:00
Ricardo Wurmus
e6586f55e0
gnu: python-xarray-dataclasses: Add missing test input.
...
* gnu/packages/python-science.scm (python-xarray-dataclasses)[native-inputs]:
Add python-pytest.
Change-Id: I137d49380d772f11f75837aa9a915ced85cfc1a2
2024-04-22 11:29:30 +02:00
Ricardo Wurmus
061c7bc1ca
gnu: python-pandas-2: Skip expensive tests.
...
* gnu/packages/python-science.scm (python-pandas-2)[arguments]: Set PANDAS_CI
variable.
Change-Id: I7c400ff260b3c833be1a55a30de021a81a5cbacb
2024-04-22 11:29:30 +02:00
Nicolas Graves
ff2d0ecfca
gnu: Add python-pandas-2.
...
* gnu/packages/python-science.scm (python-pandas-2): New variable.
Co-authored-by: Ricardo Wurmus <rekado@elephly.net>
Change-Id: I7f0510f9021d4eac3c981e5e58f73dc3ec7efd2f
2024-04-22 11:29:30 +02:00
Ricardo Wurmus
81eb92105f
gnu: Add python-xarray-datatree.
...
* gnu/packages/python-science.scm (python-xarray-datatree): New variable.
Change-Id: I403f241b6daae8b5c835f4517a1dceca0393f8e6
2024-04-22 11:29:29 +02:00
Ricardo Wurmus
3c00ef084b
gnu: Add python-xarray-dataclasses.
...
* gnu/packages/python-science.scm (python-xarray-dataclasses): New variable.
Change-Id: I55f258e36ea70a2efb142bd652a81d70771a457c
2024-04-22 11:29:29 +02:00
Maxim Cournoyer
05eb9349e3
gnu: Add python-pods.
...
* gnu/packages/python-science.scm (python-pods): New variable.
Change-Id: I9044baaa750ee9cb7411e41dcee1df17b57741db
2024-03-31 21:25:51 -04:00
Sharlatan Hellseher
25d66b55c2
gnu: python-distributed: Disable parallel tests.
...
As seen in <https://ci.guix.gnu.org/build/3708961/log/raw >, parallel
tests introduced package build regression.
* gnu/packages/python-science.scm (python-distributed) [arguments]
<#:test-flags>: Disable parallel tests.
[native-inputs]: Remove python-pytest-xdist.
Change-Id: I3a04098604fa03ab91ceb228dd70c34c3d84db78
2024-03-29 19:08:08 +00:00
Sharlatan Hellseher
249f0a9c9f
gnu: python-distributed: Speed up tests.
...
* gnu/packages/python-science.scm (python-distributed) [arguments]
<#:test-flags>: Add option to run tests in parallel. Disable 3 more
flaky tests.
[native-inputs]: Add python-pytest-xdist. Sort alphabetically.
Change-Id: I588c1a1dc82e3208cc1eeeefbdc58fb080775ac0
2024-03-29 15:08:07 +00:00
nafkhamdc
d616e85ac8
gnu: python-upsetplot: Update to 0.9.0.
...
* gnu/packages/python-science.scm (python-upsetplot): Update to 0.9.0.
[source]: Remove obsolete snippet.
[arguments]: Remove custom check phase.
[build-system]: Use pyproject-build-system.
Change-Id: I68bcd6840577a12594e491e9fd5e114f9261f6c7
Co-authored-by: Ricardo Wurmus <rekado@elephly.net>
2024-03-28 13:37:20 +01:00
TimotheeMathieu
9474e64b09
gnu: Add python-scikit-opt.
...
* gnu/packages/python-science.scm (python-scikit-opt): New variable.
Change-Id: I47d6b35d9658a37a242b4db61d293fa7efd33802
Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2024-02-10 22:51:59 +01:00
Sharlatan Hellseher
5729b2b352
gnu: python-traittypes: Simplify package.
...
* gnu/packages/python-science.scm (python-traittypes) [build-system]:
Swap to pyproject-build-system.
[arguments]: Move excluded tests to <#:test-flags>. Use standard 'check
phase.
Change-Id: I4cab0c94036a7e5f0851edf2833dfac2f675d2a0
2024-02-06 21:11:40 +00:00
Sharlatan Hellseher
5dee582c13
gnu: python-pynrrd: Update to 1.0.0.
...
* gnu/packages/python-science.scm (python-pynrrd): Update to 1.0.0.
[arguments]: Keep 'ensure-no-mtimes-pre-1980 phase as it's building with
it successfully.
[propagated-inputs]: Add python-nptyping and python-typing-extensions.
Change-Id: Ic4dcd0825e71d3eb4acd39694bee9e22e8485f9f
2024-02-06 19:56:05 +00:00
Sharlatan Hellseher
ac18dfc675
gnu: python-pynrrd: Improve description.
...
* gnu/packages/python-science.scm (python-pynrrd) [description]: Add
definition of NRRD.
Change-Id: I0335df0eb4be600d81799da64374ddfb49b06720
2024-02-06 19:49:50 +00:00
Antero Mejr
36f5db706c
gnu: Add python-pynrrd.
...
* gnu/packages/python-science.scm (python-pynrrd): New variable.
Signed-off-by: Sharlatan Hellseher <sharlatanus@gmail.com>
2024-02-06 19:40:17 +00:00
Wiktor Żelazny
a879dd8b36
gnu: Add python-pandarallel.
...
* gnu/packages/python-science.scm (python-pandarallel): New variable.
Signed-off-by: Sharlatan Hellseher <sharlatanus@gmail.com>
2024-02-01 21:16:14 +00:00
Efraim Flashner
9f1ab898c3
gnu: python-scipy: Enable building on more architectures.
...
* gnu/packages/python-science.scm (python-scipy)[propagated-inputs]:
Only include python-jupytext on systems where it is supported.
Change-Id: Ic085094e4e3977e4c0698e8c03de09ee8e70f144
2024-01-30 13:43:32 +02:00
Troy Figiel
cde0adaacd
gnu: Add python-pyjanitor.
...
* gnu/packages/python-science.scm (python-pyjanitor): New variable.
Signed-off-by: Sharlatan Hellseher <sharlatanus@gmail.com>
2024-01-29 21:40:59 +00:00
Troy Figiel
343f4f1d70
gnu: Add python-unyt.
...
* gnu/packages/python-science.scm (python-unyt): New variable.
Signed-off-by: Sharlatan Hellseher <sharlatanus@gmail.com>
2024-01-29 21:12:12 +00:00
Sharlatan Hellseher
77a07a968f
gnu: python-pyamg: Regenerate bundled files.
...
* gnu/packages/python-science.scm (python-pyamg) [source]: Delete
auto-generated files.
[arguments] <#:phases>: Add 'amg-core-bind-them phase to
re-generate *_bind.cpp files deleted in snippet.
[native-inputs]: Add python-cppheaderparser and python-pyyaml.
[description]: Improve style, omit implementation details.
Change-Id: I6f68914cd912e6f4592e51c21b129847e73be847
2024-01-28 22:44:30 +00:00
Sharlatan Hellseher
42c7b50e23
gnu: python-trimesh: Enable tests.
...
* gnu/packages/python-science.scm (python-trimesh): Enable tests and
apply new package style.
[source]: Use git checkout which has working test suit.
[arguments] <#:test-flags>: Disable tests requiring optional Python
modules.
[propagated-inputs]: Add python-chardet, python-colorlog python-httpx
python-jsonschema python-lxml python-networkx python-pillow
python-requests python-rtree python-scipy python-setuptools
python-shapely python-sympy and python-xxhash.
Change-Id: I1aa363053c2d736bc44b8f9071c637256cc2d952
2024-01-28 22:39:22 +00:00
Sharlatan Hellseher
a01afbd300
gnu: python-trimesh: Update to 4.0.10.
...
* gnu/packages/python-science.scm (python-trimesh): Update to 4.0.10.
[build-system]: Swap to pyproject-build-system.
Change-Id: I757b4c27db9969d42021434883a057debbbc83fd
2024-01-28 22:38:05 +00:00
Vinicius Monego
a4c9766108
gnu: python-xarray-einstats: Update to 0.7.0.
...
* gnu/packages/python-science.scm (python-xarray-einstats): Update to 0.7.0.
Change-Id: Iddd1fca8c37f05a928d20b90f9f95814f31435b2
2024-01-24 20:02:51 -03:00
Ricardo Wurmus
afd0fe50b0
gnu: python-pyts: Update to 0.13.0.
...
* gnu/packages/python-science.scm (python-pyts): Update to 0.13.0.
[build-system]: Use pyproject-build-system.
[arguments]: Remove custom 'check phase; enable all tests.
[propagated-inputs]: Remove python-matplotlib.
Change-Id: Iafcc047d8bb14e1eef514fd92aa53f8fda38eab0
2024-01-24 11:34:35 +01:00
Sharlatan Hellseher
3419c216b4
gnu: python-pydicom: Update to 2.4.4.
...
* gnu/packages/python-science.scm (python-pydicom): Update to 2.4.4.
Change-Id: I996115fb3bdf0bd61d2b2dcdb2500b31ce104597
2024-01-23 23:57:32 +00:00
Sharlatan Hellseher
b537437af7
gnu: python-pydicom: Simplify package style.
...
* gnu/packages/python-science.scm (python-pydicom)[build-system]: Swap
to pyproject-build-system.
[description]: Simplify wording, indent.
Change-Id: I7ef413ea2da6cbb83eb33424c559f7ac5ed549cb
2024-01-23 23:54:44 +00:00
Sharlatan Hellseher
5a616cc14b
gnu: python-pynetdicom: Simplify package style.
...
* gnu/package/python-science.scm (python-pynetdicom)[build-system]: Swap
to pyproject-build-system.
[description]: Simplify wording, indent.
Change-Id: If4e80d06edb0080685d0695f30abc2f9db669f45
2024-01-23 23:51:48 +00:00
Antero Mejr
e71abbc643
gnu: Add python-pynetdicom.
...
* gnu/packages/python-science.scm (python-pynetdicom): New variable.
Signed-off-by: Sharlatan Hellseher <sharlatanus@gmail.com>
2024-01-23 23:38:02 +00:00
Ricardo Wurmus
994817bfdc
gnu: python-scipy: Update to 1.12.0.
...
* gnu/packages/python-science.scm (python-scipy): Update to 1.12.0.
[propagated-inputs]: Add python-jupytext, python-mpmath, python-mypy,
python-numpydoc, python-pydata-sphinx-theme, python-pydevtool,
python-rich-click, python-sphinx, python-threadpoolctl, and
python-typing-extensions; remove python-pyparsing.
[native-inputs]: Add python-hypothesis, python-pycodestyle, python-pytest-cov,
and python-pytest-xdist; remove python-threadpoolctl.
Change-Id: I81a4831e3d94c58416f7d35ec47de90370b88210
2024-01-23 13:36:47 +01:00
Troy Figiel
6f6cfb8365
gnu: python-tdda: Remove relax-requirements phase.
...
* gnu/packages/python-science.scm (python-tdda)[arguments]<#:phases>: Remove relax-requirements phase.
Signed-off-by: Sharlatan Hellseher <sharlatanus@gmail.com>
2024-01-22 21:48:28 +00:00
Sharlatan Hellseher
b9e74d092d
gnu: python-scikit-fem: Update to 9.0.1.
...
* gnu/packages/python-science.scm (python-scikit-fem): Update to 9.0.1.
[arguments]<#:test-flags>: Drop it to activate all tests.
[native-inputs]: Add python-autograd, python-pyamg, and python-shapely.
Change-Id: Ic4706196026bd5756b4db8230b15efacdca7d463
2024-01-21 17:40:18 +00:00
Felix Gruber
5f93aa182a
gnu: Add python-pyamg.
...
* gnu/packages/python-science.scm (python-pyamg): New variable.
Change-Id: Ibf39fecd14d4e6fd72078b217737e5e5cbbf2321
Signed-off-by: Sharlatan Hellseher <sharlatanus@gmail.com>
2024-01-21 17:18:29 +00:00
Troy Figiel
e1d3be4113
gnu: python-pandera: Fix build.
...
* gnu/packages/python-science.scm (python-pandera): Fix build.
[source]: Delete tests/modin directory.
[native-inputs]: Remove python-modin.
Signed-off-by: Sharlatan Hellseher <sharlatanus@gmail.com>
2024-01-20 22:03:03 +00:00
Troy Figiel
7c540ed106
gnu: python-pandas-stubs: Update to 1.5.3.230321.
...
* gnu/packages/python-science.scm (python-pandas-stubs): Update to
1.5.3.230321.
[arguments]<#:test-flags>: Ignore tests that require a version of
python-pyarrow with ORC integration.
[native-inputs]: Add python-odfpy.
Signed-off-by: Sharlatan Hellseher <sharlatanus@gmail.com>
2024-01-20 22:02:49 +00:00
Troy Figiel
0118fe6f85
gnu: python-plotnine: Reformat with guix style.
...
* gnu/packages/python-science.scm (python-plotnine): Reformat with guix style.
Signed-off-by: Sharlatan Hellseher <sharlatanus@gmail.com>
2024-01-18 21:04:21 +00:00
Troy Figiel
662ae5eac2
gnu: python-plotnine: Fix build.
...
* gnu/packages/python-science.scm (python-plotnine): Fix build.
[arguments]<#:test-flags>: Add test_custom_shape to ignored tests.
Co-authored-by: Sharlatan Hellseher <sharlatanus@gmail.com>
Signed-off-by: Sharlatan Hellseher <sharlatanus@gmail.com>
2024-01-18 20:56:59 +00:00
Troy Figiel
dac977ea4e
gnu: Add python-pandera.
...
* gnu/packages/python-science.scm (python-pandera): New variable.
2024-01-17 11:18:00 +01:00
