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102378 Commits

Author SHA1 Message Date
Ricardo Wurmus
a9d140996c
gnu: r-isoformswitchanalyzer: Update to 2.0.1. 
* gnu/packages/bioconductor.scm (r-isoformswitchanalyzer): Update to 2.0.1.
[propagated-inputs]: Remove r-drimseq; add r-biocparallel, r-pfamanalyzer, r-s4vectors,
r-saturn, r-summarizedexperiment, r-sva, and r-tidyr.
 2023-07-12 14:29:09 +02:00
Ricardo Wurmus
b864a5956f
gnu: r-iranges: Update to 2.34.1. 
* gnu/packages/bioconductor.scm (r-iranges): Update to 2.34.1.
 2023-07-12 14:29:09 +02:00
Ricardo Wurmus
5eaf9f6b83
gnu: r-delayedarray: Update to 0.26.6. 
* gnu/packages/bioconductor.scm (r-delayedarray): Update to 0.26.6.
 2023-07-12 14:29:09 +02:00
Ricardo Wurmus
6e83dee12a
gnu: r-bambu: Update to 3.2.5. 
* gnu/packages/bioconductor.scm (r-bambu): Update to 3.2.5.
 2023-07-12 14:29:09 +02:00
Ricardo Wurmus
f0c82ddced
gnu: r-alevinqc: Update to 1.16.1. 
* gnu/packages/bioconductor.scm (r-alevinqc): Update to 1.16.1.
 2023-07-12 14:29:09 +02:00
Ricardo Wurmus
4db85c197b
gnu: r-ancombc: Update to 2.2.1. 
* gnu/packages/bioconductor.scm (r-ancombc): Update to 2.2.1.
[propagated-inputs]: Remove r-dplyr, r-emmeans, r-magrittr, r-rlang, r-rngtools,
r-tibble, and r-tidyr; add r-gtools, r-matrix, and r-multcomp.
 2023-07-12 14:29:09 +02:00
Ricardo Wurmus
558637533f
gnu: r-gdsfmt: Update to 1.36.1. 
* gnu/packages/bioconductor.scm (r-gdsfmt): Update to 1.36.1.
[properties]: Tell updater to leave the extra inputs be.
 2023-07-12 14:29:09 +02:00
Ricardo Wurmus
b4cafa71ae
gnu: Add r-saturn. 
* gnu/packages/bioconductor.scm (r-saturn): New variable.
 2023-07-12 14:29:09 +02:00
Ricardo Wurmus
990bac0ea5
gnu: Add r-pfamanalyzer. 
* gnu/packages/bioconductor.scm (r-pfamanalyzer): New variable.
 2023-07-12 14:29:09 +02:00
Ricardo Wurmus
b10bff65be
gnu: r-mzr: Update to 2.34.1. 
* gnu/packages/bioconductor.scm (r-mzr): Update to 2.34.1.
[properties]: Tell updater to not remove the "boost" input.
 2023-07-12 14:29:09 +02:00
Ricardo Wurmus
ee50cae529
gnu: r-norm: Update to 1.0-11.1. 
* gnu/packages/statistics.scm (r-norm): Update to 1.0-11.1.
 2023-07-12 14:29:09 +02:00
Ricardo Wurmus
c141725c65
gnu: r-logspline: Update to 2.1.20. 
* gnu/packages/statistics.scm (r-logspline): Update to 2.1.20.
 2023-07-12 14:29:09 +02:00
Ricardo Wurmus
5a1c16fa18
gnu: r-pbapply: Update to 1.7-2. 
* gnu/packages/statistics.scm (r-pbapply): Update to 1.7-2.
 2023-07-12 14:29:09 +02:00
Ricardo Wurmus
42c29d9d22
gnu: r-robust: Update to 0.7-2. 
* gnu/packages/statistics.scm (r-robust): Update to 0.7-2.
 2023-07-12 14:29:09 +02:00
Ricardo Wurmus
2108aa1975
gnu: r-rrcov: Update to 1.7-4. 
* gnu/packages/statistics.scm (r-rrcov): Update to 1.7-4.
 2023-07-12 14:29:09 +02:00
Ricardo Wurmus
387c1fafce
gnu: r-robustbase: Update to 0.99-0. 
* gnu/packages/statistics.scm (r-robustbase): Update to 0.99-0.
 2023-07-12 14:29:08 +02:00
Ricardo Wurmus
86c7032abf
gnu: r-deoptimr: Update to 1.0-14. 
* gnu/packages/statistics.scm (r-deoptimr): Update to 1.0-14.
 2023-07-12 14:29:08 +02:00
Ricardo Wurmus
f9dc378cb4
gnu: r-mvtnorm: Update to 1.2-2. 
* gnu/packages/statistics.scm (r-mvtnorm): Update to 1.2-2.
 2023-07-12 14:29:08 +02:00
Ricardo Wurmus
e8ef13993e
gnu: r-rmarkdown: Update to 2.23. 
* gnu/packages/statistics.scm (r-rmarkdown): Update to 2.23.
 2023-07-12 14:29:08 +02:00
Ricardo Wurmus
7cb71cb2fb
gnu: r-rcpparmadillo: Update to 0.12.4.1.0. 
* gnu/packages/statistics.scm (r-rcpparmadillo): Update to 0.12.4.1.0.
 2023-07-12 14:29:08 +02:00
Ricardo Wurmus
b8112b4600
gnu: r-rstudioapi: Update to 0.15.0. 
* gnu/packages/statistics.scm (r-rstudioapi): Update to 0.15.0.
 2023-07-12 14:29:08 +02:00
Ricardo Wurmus
c5c0f85b77
gnu: r-xml2: Update to 1.3.5. 
* gnu/packages/statistics.scm (r-xml2): Update to 1.3.5.
 2023-07-12 14:29:08 +02:00
Ricardo Wurmus
4ec94fe0a9
gnu: r-locfit: Update to 1.5-9.8. 
* gnu/packages/statistics.scm (r-locfit): Update to 1.5-9.8.
 2023-07-12 14:29:08 +02:00
Ricardo Wurmus
1493844a1e
gnu: r-dbplyr: Update to 2.3.3. 
* gnu/packages/statistics.scm (r-dbplyr): Update to 2.3.3.
 2023-07-12 14:29:08 +02:00
Ricardo Wurmus
6276fbb64a
gnu: r-testthat: Update to 3.1.10. 
* gnu/packages/statistics.scm (r-testthat): Update to 3.1.10.
 2023-07-12 14:29:08 +02:00
Ricardo Wurmus
b372435930
gnu: r-matrix: Update to 1.6-0. 
* gnu/packages/statistics.scm (r-matrix): Update to 1.6-0.
 2023-07-12 14:29:08 +02:00
Ricardo Wurmus
f072cd9486
gnu: r-kernsmooth: Update to 2.23-22. 
* gnu/packages/statistics.scm (r-kernsmooth): Update to 2.23-22.
 2023-07-12 14:29:08 +02:00
Ricardo Wurmus
42b5758b82
gnu: r-paws: Update to 0.3.0. 
* gnu/packages/cran.scm (r-paws): Update to 0.3.0.
 2023-07-12 14:29:08 +02:00
Ricardo Wurmus
5933aadf2f
gnu: r-paws-compute: Update to 0.3.1. 
* gnu/packages/cran.scm (r-paws-compute): Update to 0.3.1.
 2023-07-12 14:29:07 +02:00
Ricardo Wurmus
c7d49778e2
gnu: r-paws-storage: Update to 0.3.0. 
* gnu/packages/cran.scm (r-paws-storage): Update to 0.3.0.
 2023-07-12 14:29:07 +02:00
Ricardo Wurmus
39302d72b8
gnu: r-paws-database: Update to 0.3.0. 
* gnu/packages/cran.scm (r-paws-database): Update to 0.3.0.
 2023-07-12 14:29:07 +02:00
Ricardo Wurmus
6df06f6712
gnu: r-paws-networking: Update to 0.3.0. 
* gnu/packages/cran.scm (r-paws-networking): Update to 0.3.0.
 2023-07-12 14:29:07 +02:00
Ricardo Wurmus
5e436baab7
gnu: r-paws-management: Update to 0.3.1. 
* gnu/packages/cran.scm (r-paws-management): Update to 0.3.1.
 2023-07-12 14:29:07 +02:00
Ricardo Wurmus
969d35e169
gnu: r-paws-machine-learning: Update to 0.3.0. 
* gnu/packages/cran.scm (r-paws-machine-learning): Update to 0.3.0.
 2023-07-12 14:29:07 +02:00
Ricardo Wurmus
9ac7524dd4
gnu: r-paws-analytics: Update to 0.3.0. 
* gnu/packages/cran.scm (r-paws-analytics): Update to 0.3.0.
 2023-07-12 14:29:07 +02:00
Ricardo Wurmus
885c7b0b3c
gnu: r-paws-security-identity: Update to 0.3.1. 
* gnu/packages/cran.scm (r-paws-security-identity): Update to 0.3.1.
 2023-07-12 14:29:07 +02:00
Ricardo Wurmus
f85b362b81
gnu: r-paws-application-integration: Update to 0.3.1. 
* gnu/packages/cran.scm (r-paws-application-integration): Update to 0.3.1.
 2023-07-12 14:29:07 +02:00
Ricardo Wurmus
688e22f4b7
gnu: r-paws-end-user-computing: Update to 0.3.0. 
* gnu/packages/cran.scm (r-paws-end-user-computing): Update to 0.3.0.
 2023-07-12 14:29:07 +02:00
Ricardo Wurmus
52312a4551
gnu: r-paws-developer-tools: Update to 0.3.1. 
* gnu/packages/cran.scm (r-paws-developer-tools): Update to 0.3.1.
 2023-07-12 14:29:07 +02:00
Ricardo Wurmus
17148282b6
gnu: r-paws-cost-management: Update to 0.3.1. 
* gnu/packages/cran.scm (r-paws-cost-management): Update to 0.3.1.
 2023-07-12 14:29:07 +02:00
Ricardo Wurmus
a656a07e37
gnu: r-paws-customer-engagement: Update to 0.3.0. 
* gnu/packages/cran.scm (r-paws-customer-engagement): Update to 0.3.0.
 2023-07-12 14:29:07 +02:00
Ricardo Wurmus
8302b17bff
gnu: r-paws-common: Update to 0.5.8. 
* gnu/packages/cran.scm (r-paws-common): Update to 0.5.8.
 2023-07-12 14:29:07 +02:00
Ricardo Wurmus
432ffdb433
gnu: r-delaporte: Update to 8.1.1. 
* gnu/packages/cran.scm (r-delaporte): Update to 8.1.1.
 2023-07-12 14:29:07 +02:00
Ricardo Wurmus
6945b8502a
gnu: r-intervals: Update to 0.15.4. 
* gnu/packages/cran.scm (r-intervals): Update to 0.15.4.
 2023-07-12 14:29:07 +02:00
Ricardo Wurmus
24177b718f
gnu: r-readtext: Update to 0.90. 
* gnu/packages/cran.scm (r-readtext): Update to 0.90.
 2023-07-12 14:29:07 +02:00
Ricardo Wurmus
7ecefb14dd
gnu: r-downlit: Update to 0.4.3. 
* gnu/packages/cran.scm (r-downlit): Update to 0.4.3.
 2023-07-12 14:29:07 +02:00
Ricardo Wurmus
362b352c92
gnu: r-mlr3tuning: Update to 0.19.0. 
* gnu/packages/cran.scm (r-mlr3tuning): Update to 0.19.0.
[native-inputs]: Add r-knitr.
 2023-07-12 14:29:07 +02:00
Ricardo Wurmus
11fe7a5bdc
gnu: r-seurat: Update to 4.3.0.1. 
* gnu/packages/cran.scm (r-seurat): Update to 4.3.0.1.
 2023-07-12 14:29:07 +02:00
Ricardo Wurmus
e744151010
gnu: r-scattermore: Update to 1.2. 
* gnu/packages/cran.scm (r-scattermore): Update to 1.2.
 2023-07-12 14:29:07 +02:00
Ricardo Wurmus
869a579c83
gnu: r-confintr: Update to 1.0.2. 
* gnu/packages/cran.scm (r-confintr): Update to 1.0.2.
 2023-07-12 14:29:07 +02:00
Ricardo Wurmus
ad78b3cc3d
gnu: r-rfast: Update to 2.0.8. 
* gnu/packages/cran.scm (r-rfast): Update to 2.0.8.
 2023-07-12 14:29:06 +02:00
Ricardo Wurmus
e3fd0a9bcb
gnu: r-cpp11: Update to 0.4.4. 
* gnu/packages/cran.scm (r-cpp11): Update to 0.4.4.
 2023-07-12 14:29:06 +02:00
Ricardo Wurmus
4ed654c934
gnu: r-spatstat-geom: Update to 3.2-2. 
* gnu/packages/cran.scm (r-spatstat-geom): Update to 3.2-2.
 2023-07-12 14:29:06 +02:00
Ricardo Wurmus
1bec2b33da
gnu: r-spatstat-sparse: Update to 3.0-2. 
* gnu/packages/cran.scm (r-spatstat-sparse): Update to 3.0-2.
 2023-07-12 14:29:06 +02:00
Ricardo Wurmus
86231c1cfd
gnu: r-fastshap: Update to 0.1.0. 
* gnu/packages/cran.scm (r-fastshap): Update to 0.1.0.
[propagated-inputs]: Remove r-abind, r-ggplot2, r-gridextra, r-matrixstats, r-plyr, and
r-tibble; add r-foreach.
[native-inputs]: Add r-knitr.
 2023-07-12 14:29:06 +02:00
Ricardo Wurmus
4169a87e19
gnu: r-scatterpie: Update to 0.2.1. 
* gnu/packages/cran.scm (r-scatterpie): Update to 0.2.1.
 2023-07-12 14:29:06 +02:00
Ricardo Wurmus
084af94196
gnu: r-aws: Update to 2.5-3. 
* gnu/packages/cran.scm (r-aws): Update to 2.5-3.
 2023-07-12 14:29:06 +02:00
Ricardo Wurmus
1d933c516d
gnu: r-kutils: Update to 1.72. 
* gnu/packages/cran.scm (r-kutils): Update to 1.72.
 2023-07-12 14:29:06 +02:00
Ricardo Wurmus
c09ccaa7f2
gnu: r-stanheaders: Update to 2.26.27. 
* gnu/packages/cran.scm (r-stanheaders): Update to 2.26.27.
 2023-07-12 14:29:06 +02:00
Ricardo Wurmus
b12240ae55
gnu: r-torch: Update to 0.11.0. 
* gnu/packages/cran.scm (r-torch): Update to 0.11.0.
 2023-07-12 14:29:06 +02:00
Ricardo Wurmus
9503d885a8
gnu: r-gdina: Update to 2.9.4. 
* gnu/packages/cran.scm (r-gdina): Update to 2.9.4.
 2023-07-12 14:29:06 +02:00
Ricardo Wurmus
ae0384d46a
gnu: r-r-huge: Update to 0.10.0. 
* gnu/packages/cran.scm (r-r-huge): Update to 0.10.0.
 2023-07-12 14:29:06 +02:00
Ricardo Wurmus
53dbbb1aa8
gnu: r-mda: Update to 0.5-4. 
* gnu/packages/cran.scm (r-mda): Update to 0.5-4.
 2023-07-12 14:29:06 +02:00
Ricardo Wurmus
8308f9ee39
gnu: r-pmcmrplus: Update to 1.9.7. 
* gnu/packages/cran.scm (r-pmcmrplus): Update to 1.9.7.
[native-inputs]: Add r-rmarkdown.
 2023-07-12 14:29:06 +02:00
Ricardo Wurmus
ce0d2221ee
gnu: r-desolve: Update to 1.36. 
* gnu/packages/cran.scm (r-desolve): Update to 1.36.
 2023-07-12 14:29:06 +02:00
Ricardo Wurmus
bf7388bcb2
gnu: r-uwot: Update to 0.1.16. 
* gnu/packages/cran.scm (r-uwot): Update to 0.1.16.
 2023-07-12 14:29:06 +02:00
Ricardo Wurmus
b13c386550
gnu: r-styler: Update to 1.10.1. 
* gnu/packages/cran.scm (r-styler): Update to 1.10.1.
 2023-07-12 14:29:06 +02:00
Ricardo Wurmus
177339b8b4
gnu: r-arrow: Update to 12.0.1. 
* gnu/packages/cran.scm (r-arrow): Update to 12.0.1.
 2023-07-12 14:29:06 +02:00
Ricardo Wurmus
f0cc272cdb
gnu: r-ggfun: Update to 0.1.1. 
* gnu/packages/cran.scm (r-ggfun): Update to 0.1.1.
 2023-07-12 14:29:06 +02:00
Ricardo Wurmus
78a7979cdb
gnu: r-ggplotify: Update to 0.1.1. 
* gnu/packages/cran.scm (r-ggplotify): Update to 0.1.1.
 2023-07-12 14:29:06 +02:00
Ricardo Wurmus
5286885510
gnu: r-polspline: Update to 1.1.23. 
* gnu/packages/cran.scm (r-polspline): Update to 1.1.23.
 2023-07-12 14:29:06 +02:00
Ricardo Wurmus
3d677f4bc1
gnu: r-spdata: Update to 2.3.0. 
* gnu/packages/cran.scm (r-spdata): Update to 2.3.0.
 2023-07-12 14:29:06 +02:00
Ricardo Wurmus
473142bc5e
gnu: r-remacor: Update to 0.0.16. 
* gnu/packages/cran.scm (r-remacor): Update to 0.0.16.
[propagated-inputs]: Remove r-clustergeneration and r-runit; add r-envstats, r-rcpp, and
r-rcpparmadillo.
 2023-07-12 14:29:05 +02:00
Ricardo Wurmus
c0273b86d7
gnu: r-future: Update to 1.33.0. 
* gnu/packages/cran.scm (r-future): Update to 1.33.0.
 2023-07-12 14:29:05 +02:00
Ricardo Wurmus
d459606e51
gnu: r-gargle: Update to 1.5.1. 
* gnu/packages/cran.scm (r-gargle): Update to 1.5.1.
 2023-07-12 14:29:05 +02:00
Ricardo Wurmus
f1ae6affed
gnu: r-kohonen: Update to 3.0.12. 
* gnu/packages/cran.scm (r-kohonen): Update to 3.0.12.
 2023-07-12 14:29:05 +02:00
Ricardo Wurmus
e6802a6816
gnu: r-admisc: Update to 0.33. 
* gnu/packages/cran.scm (r-admisc): Update to 0.33.
 2023-07-12 14:29:05 +02:00
Ricardo Wurmus
04e54c155d
gnu: r-biocmanager: Update to 1.30.21. 
* gnu/packages/cran.scm (r-biocmanager): Update to 1.30.21.
 2023-07-12 14:29:05 +02:00
Ricardo Wurmus
7a331225a6
gnu: r-rcppannoy: Update to 0.0.21. 
* gnu/packages/cran.scm (r-rcppannoy): Update to 0.0.21.
 2023-07-12 14:29:05 +02:00
Ricardo Wurmus
6b8f69add4
gnu: r-usethis: Update to 2.2.2. 
* gnu/packages/cran.scm (r-usethis): Update to 2.2.2.
 2023-07-12 14:29:05 +02:00
Ricardo Wurmus
c62608ab3a
gnu: r-ggeffects: Update to 1.2.3. 
* gnu/packages/cran.scm (r-ggeffects): Update to 1.2.3.
 2023-07-12 14:29:05 +02:00
Ricardo Wurmus
cbc2b21497
gnu: r-emmeans: Update to 1.8.7. 
* gnu/packages/cran.scm (r-emmeans): Update to 1.8.7.
 2023-07-12 14:29:05 +02:00
Ricardo Wurmus
2a3124d924
gnu: r-multcomp: Update to 1.4-25. 
* gnu/packages/cran.scm (r-multcomp): Update to 1.4-25.
 2023-07-12 14:29:05 +02:00
Ricardo Wurmus
e29a78dbcf
gnu: r-targets: Update to 1.2.0. 
* gnu/packages/cran.scm (r-targets): Update to 1.2.0.
 2023-07-12 14:29:05 +02:00
Ricardo Wurmus
acd42d0d39
gnu: r-tarchetypes: Update to 0.7.7. 
* gnu/packages/cran.scm (r-tarchetypes): Update to 0.7.7.
 2023-07-12 14:29:05 +02:00
Ricardo Wurmus
63319c1939
gnu: r-raster: Update to 3.6-23. 
* gnu/packages/cran.scm (r-raster): Update to 3.6-23.
 2023-07-12 14:29:05 +02:00
Ricardo Wurmus
c16238380e
gnu: r-labelled: Update to 2.12.0. 
* gnu/packages/cran.scm (r-labelled): Update to 2.12.0.
 2023-07-12 14:29:04 +02:00
Ricardo Wurmus
31eb88db4b
gnu: r-qualv: Update to 0.3-5. 
* gnu/packages/cran.scm (r-qualv): Update to 0.3-5.
 2023-07-12 14:29:04 +02:00
Ricardo Wurmus
530a3023e0
gnu: r-proc: Update to 1.18.4. 
* gnu/packages/cran.scm (r-proc): Update to 1.18.4.
 2023-07-12 14:29:04 +02:00
Ricardo Wurmus
41e722549a
gnu: r-golem: Update to 0.4.1. 
* gnu/packages/cran.scm (r-golem): Update to 0.4.1.
 2023-07-12 14:29:04 +02:00
Ricardo Wurmus
172aeabe36
gnu: r-flextable: Update to 0.9.2. 
* gnu/packages/cran.scm (r-flextable): Update to 0.9.2.
 2023-07-12 14:29:04 +02:00
Ricardo Wurmus
94afe638da
gnu: r-insight: Update to 0.19.3. 
* gnu/packages/cran.scm (r-insight): Update to 0.19.3.
 2023-07-12 14:29:04 +02:00
Ricardo Wurmus
3c08e4faff
gnu: r-reticulate: Update to 1.30. 
* gnu/packages/cran.scm (r-reticulate): Update to 1.30.
[propagated-inputs]: Add r-rlang.
 2023-07-12 14:29:04 +02:00
Ricardo Wurmus
6b4689ced6
gnu: r-renv: Update to 1.0.0. 
* gnu/packages/cran.scm (r-renv): Update to 1.0.0.
 2023-07-12 14:29:04 +02:00
Ricardo Wurmus
b3983eb663
gnu: r-sitar: Update to 1.4.0. 
* gnu/packages/cran.scm (r-sitar): Update to 1.4.0.
 2023-07-12 14:29:04 +02:00
Ricardo Wurmus
230aa51bb8
gnu: r-cubature: Update to 2.1.0. 
* gnu/packages/cran.scm (r-cubature): Update to 2.1.0.
 2023-07-12 14:29:04 +02:00
Ricardo Wurmus
d37077053e
gnu: r-quantmod: Update to 0.4.23. 
* gnu/packages/cran.scm (r-quantmod): Update to 0.4.23.
 2023-07-12 14:29:04 +02:00
Ricardo Wurmus
b3be4e8ea7
gnu: r-vctrs: Update to 0.6.3. 
* gnu/packages/cran.scm (r-vctrs): Update to 0.6.3.
 2023-07-12 14:29:04 +02:00
Ricardo Wurmus
105b50bd47
gnu: r-webshot: Update to 0.5.5. 
* gnu/packages/cran.scm (r-webshot): Update to 0.5.5.
 2023-07-12 14:29:04 +02:00
Ricardo Wurmus
579f31b517
gnu: r-processx: Update to 3.8.2. 
* gnu/packages/cran.scm (r-processx): Update to 3.8.2.
 2023-07-12 14:29:04 +02:00
Ricardo Wurmus
e6fe82b26b
gnu: r-gss: Update to 2.2-5. 
* gnu/packages/cran.scm (r-gss): Update to 2.2-5.
 2023-07-12 14:29:04 +02:00
Ricardo Wurmus
e261244e7f
gnu: r-mice: Update to 3.16.0. 
* gnu/packages/cran.scm (r-mice): Update to 3.16.0.
[propagated-inputs]: Add r-glmnet, r-mitml, r-nnet, and r-rpart.
 2023-07-12 14:29:04 +02:00
Ricardo Wurmus
fde0293e71
gnu: r-pan: Update to 1.8. 
* gnu/packages/cran.scm (r-pan): Update to 1.8.
 2023-07-12 14:29:04 +02:00
Ricardo Wurmus
66d6467f6c
gnu: r-broom: Update to 1.0.5. 
* gnu/packages/cran.scm (r-broom): Update to 1.0.5.
 2023-07-12 14:29:04 +02:00
Ricardo Wurmus
40fb5a1f4c
gnu: r-psych: Update to 2.3.6. 
* gnu/packages/cran.scm (r-psych): Update to 2.3.6.
 2023-07-12 14:29:04 +02:00
Ricardo Wurmus
64d4396288
gnu: r-emdbook: Update to 1.3.13. 
* gnu/packages/cran.scm (r-emdbook): Update to 1.3.13.
 2023-07-12 14:29:04 +02:00
Ricardo Wurmus
2ba310e2af
gnu: r-sp: Update to 2.0-0. 
* gnu/packages/cran.scm (r-sp): Update to 2.0-0.
 2023-07-12 14:29:04 +02:00
Ricardo Wurmus
551e46d290
gnu: r-ctrdata: Update to 1.13.3. 
* gnu/packages/cran.scm (r-ctrdata): Update to 1.13.3.
 2023-07-12 14:29:04 +02:00
Ricardo Wurmus
96e895f6ea
gnu: r-rcppthread: Update to 2.1.5. 
* gnu/packages/cran.scm (r-rcppthread): Update to 2.1.5.
[native-inputs]: Add r-r-rsp.
 2023-07-12 14:29:04 +02:00
Ricardo Wurmus
5f609dc440
gnu: r-rcppspdlog: Update to 0.0.13. 
* gnu/packages/cran.scm (r-rcppspdlog): Update to 0.0.13.
 2023-07-12 14:29:04 +02:00
Ricardo Wurmus
b4c0815613
gnu: r-rcpp: Update to 1.0.11. 
* gnu/packages/cran.scm (r-rcpp): Update to 1.0.11.
 2023-07-12 14:29:03 +02:00
Ricardo Wurmus
2481363f9f
gnu: r-pkgload: Update to 1.3.2.1. 
* gnu/packages/cran.scm (r-pkgload): Update to 1.3.2.1.
 2023-07-12 14:29:03 +02:00
Ricardo Wurmus
f40b72c9c1
gnu: r-pkgbuild: Update to 1.4.2. 
* gnu/packages/cran.scm (r-pkgbuild): Update to 1.4.2.
[propagated-inputs]: Remove r-withr.
 2023-07-12 14:29:03 +02:00
Ricardo Wurmus
27173e7545
gnu: r-ggtern: Update to 3.4.2. 
* gnu/packages/cran.scm (r-ggtern): Update to 3.4.2.
 2023-07-12 14:29:03 +02:00
Ricardo Wurmus
e7e8ef4c4c
gnu: r-fastdummies: Update to 1.7.3. 
* gnu/packages/cran.scm (r-fastdummies): Update to 1.7.3.
 2023-07-12 14:29:03 +02:00
Ricardo Wurmus
90af9e7b2d
gnu: r-curl: Update to 5.0.1. 
* gnu/packages/cran.scm (r-curl): Update to 5.0.1.
 2023-07-12 14:29:03 +02:00
Ricardo Wurmus
3f24044d91
gnu: r-jsonlite: Update to 1.8.7. 
* gnu/packages/cran.scm (r-jsonlite): Update to 1.8.7.
[native-inputs]: Add r-r-rsp.
 2023-07-12 14:29:03 +02:00
Ricardo Wurmus
a71b693379
gnu: r-readxl: Update to 1.4.3. 
* gnu/packages/cran.scm (r-readxl): Update to 1.4.3.
 2023-07-12 14:29:03 +02:00
Ricardo Wurmus
be7139e592
gnu: r-ecp: Update to 3.1.5. 
* gnu/packages/cran.scm (r-ecp): Update to 3.1.5.
 2023-07-12 14:29:03 +02:00
Ricardo Wurmus
00db622370
gnu: r-ggpmisc: Update to 0.5.3. 
* gnu/packages/cran.scm (r-ggpmisc): Update to 0.5.3.
 2023-07-12 14:29:03 +02:00
Ricardo Wurmus
8825d76885
gnu: r-googlesheets4: Update to 1.1.1. 
* gnu/packages/cran.scm (r-googlesheets4): Update to 1.1.1.
 2023-07-12 14:29:03 +02:00
Ricardo Wurmus
44e149cfaa
gnu: r-googledrive: Update to 2.1.1. 
* gnu/packages/cran.scm (r-googledrive): Update to 2.1.1.
 2023-07-12 14:29:03 +02:00
Ricardo Wurmus
1d6792cf83
gnu: r-datawizard: Update to 0.8.0. 
* gnu/packages/cran.scm (r-datawizard): Update to 0.8.0.
 2023-07-12 14:29:03 +02:00
Ricardo Wurmus
bb570c1534
gnu: r-ggpicrust2: Update to 1.7.1. 
* gnu/packages/bioconductor.scm (r-ggpicrust2): Update to 1.7.1.
[propagated-inputs]: Remove r-phyloseq; add r-ggh4x.
 2023-07-12 14:29:03 +02:00
Ricardo Wurmus
d669b30658
gnu: r-scistreer: Update to 1.2.0. 
* gnu/packages/bioconductor.scm (r-scistreer): Update to 1.2.0.
 2023-07-12 14:29:03 +02:00
Ricardo Wurmus
5f8104b3a4
gnu: r-numbat: Update to 1.3.2-1. 
* gnu/packages/bioconductor.scm (r-numbat): Update to 1.3.2-1.
 2023-07-12 14:29:03 +02:00
Ricardo Wurmus
347e3b1b75
gnu: r-biomartr: Update to 1.0.4. 
* gnu/packages/bioconductor.scm (r-biomartr): Update to 1.0.4.
 2023-07-12 14:29:03 +02:00
Ricardo Wurmus
49fe6b3d66
gnu: apache-arrow: Update to 12.0.1. 
* gnu/packages/databases.scm (apache-arrow): Update to 12.0.1.
 2023-07-12 14:29:03 +02:00
Ricardo Wurmus
abd0c1b29d
gnu: r-mlr3: Update to 0.16.1. 
* gnu/packages/cran.scm (r-mlr3): Update to 0.16.1.
 2023-07-12 14:29:02 +02:00
Ricardo Wurmus
66e988201d
gnu: r-igraph: Update to 1.5.0. 
* gnu/packages/cran.scm (r-igraph): Update to 1.5.0.
[propagated-inputs]: Add r-cli.
 2023-07-12 14:29:02 +02:00
Ricardo Wurmus
56b8a26951
gnu: r-terra: Update to 1.7-39. 
* gnu/packages/cran.scm (r-terra): Update to 1.7-39.
[inputs]: Add curl, openssh, openssl, and pcre2.
 2023-07-12 14:29:02 +02:00
Ricardo Wurmus
5dea2079b1
gnu: r-leidenalg: Update to 1.1.0. 
* gnu/packages/cran.scm (r-leidenalg): Update to 1.1.0.
[properties]: Add hint for updater to keep gmp as input.
 2023-07-12 14:29:02 +02:00
Ricardo Wurmus
5aca0cd1e3
gnu: Add r-envstats. 
* gnu/packages/cran.scm (r-envstats): New variable.
 2023-07-12 14:29:02 +02:00
Ricardo Wurmus
64b18f3282
gnu: r-gmp: Update to 0.7-2. 
* gnu/packages/cran.scm (r-gmp): Update to 0.7-2.
[arguments]: Remove obsolete build phase.
[properties]: Tell updater that "gmp" is an extra input.
 2023-07-12 14:29:02 +02:00
Ricardo Wurmus
2c04ca3de0
gnu: r-haven: Update to 2.5.3. 
* gnu/packages/cran.scm (r-haven): Update to 2.5.3.
[properties]: Declare readstat as an extra input.
[native-inputs]: Add pkg-config.
 2023-07-12 14:29:02 +02:00
Ricardo Wurmus
95a4fc7e9c
gnu: r-gprofiler2: Update to 0.2.2. 
* gnu/packages/cran.scm (r-gprofiler2): Update to 0.2.2.
[native-inputs]: Add r-rmarkdown.
 2023-07-12 14:29:02 +02:00
Ricardo Wurmus
1223a87a14
gnu: r-v8: Update to 4.3.2. 
* gnu/packages/cran.scm (r-v8): Update to 4.3.2.
[properties]: Declare libnode as an extra input, not an ignored input.
 2023-07-12 14:29:02 +02:00
Ricardo Wurmus
1b09d2e9ae
gnu: r-lme4: Update to 1.1-34. 
* gnu/packages/statistics.scm (r-lme4): Update to 1.1-34.
 2023-07-12 14:29:02 +02:00
Ricardo Wurmus
138d0dd9ad
gnu: r-digest: Update to 0.6.33. 
* gnu/packages/statistics.scm (r-digest): Update to 0.6.33.
[native-inputs]: Add r-simplermarkdown.
 2023-07-12 14:29:02 +02:00
Ricardo Wurmus
60c70a9009
gnu: r-plotly: Update to 4.10.2. 
* gnu/packages/statistics.scm (r-plotly): Update to 4.10.2.
 2023-07-12 14:29:02 +02:00
Ricardo Wurmus
7c2290f663
gnu: r-opencpu: Update to 2.2.10. 
* gnu/packages/cran.scm (r-opencpu): Update to 2.2.10.
[properties]: Add hints for updater.
 2023-07-12 14:29:02 +02:00
Ricardo Wurmus
cca7d7ea4c
gnu: r-rgl: Update to 1.2.1. 
* gnu/packages/cran.scm (r-rgl): Update to 1.2.1.
[properties]: Tell updater to not remove glu and libx11.
 2023-07-12 14:29:01 +02:00
Ricardo Wurmus
2680ec55ff
gnu: r-bslib: Update to 0.5.0. 
* gnu/packages/cran.scm (r-bslib): Update to  0.5.0.
[source]: Delete minified JavaScript for components.
[arguments]: Update 'process-javascript phase to generate components from
source.
[native-inputs]: Add typescript-components.
 2023-07-12 14:29:01 +02:00
jgart
4a027d2b0e
gnu: rr: Fix typo in synopsis. 
* gnu/packages/debug.scm (rr)
[synopsis]: Fix typo.
 2023-07-11 22:43:35 -05:00
jgart
cf3bd63b06
gnu: keepassxc: Fix broken home-page url. 
* gnu/packages/password-utils.scm (keepassxc): Fix broken url.
[home-page]: Fix broken url.
 2023-07-11 22:43:05 -05:00
Zhu Zihao
b5baa98053
gnu: nix: Update to 2.16.1. 
* gnu/packages/package-management.scm (nix): Update to 2.16.1.
[source]: Use HTTPS for package source.
[inputs]: Add nlohmann-json.
[native-inputs]: Add rapidcheck.
[arguments]<#:phases>: In phase "check", change the value of environment
variable  "NIX_STORE" to "/nix/store" temporarily.

* gnu/packages/patches/nix-dont-build-html-doc.diff: Update.

Co-authored-by: jgart <jgart@dismail.de>
 2023-07-11 22:28:52 -05:00
Zhu Zihao
38f050193b
gnu: Add rapidcheck. 
* gnu/packages/check.scm (rapidcheck): New variable.
 2023-07-11 21:39:35 -05:00
AwesomeAdam54321
b073fb9896
gnu: Add python-redo. 
* gnu/packages/python-xyz.scm (python-redo): New variable.
 2023-07-11 21:39:27 -05:00
Daniel Meißner
64b720e65e
gnu: Add python-cloup. 
* gnu/packages/python-xyz.scm (python-cloup): New variable.

Co-authored-by: jgart <jgart@dismail.de>
 2023-07-11 20:33:15 -05:00
John Kehayias
15f9870eb3
gnu: rocm: Update to 5.6.0. 
Update all of the ROCm packages at the same time as they share a version
number and should be upgraded together, including llvm-for-rocm.

* gnu/packages/llvm.scm (llvm-for-rocm): Update to 5.6.0.
[source]{patches}: Remove unneeded patches (linkdl and remove-isystem-usr-include).
* gnu/packages/rocm.scm (rocm-cmake, roct-thunk-interface): Update
to 5.6.0.
(rocclr-src): Update to 5.6.0.
[source]{patches}: Add enable-gfx800 patch.
(rocm-device-libs):  Update to 5.6.0.
[inputs]: Update style.
(rocm-comgr): Update to 5.6.0.
[inputs]: Remove lld.  Update style.
(rocr-runtime): Update to 5.6.0.
[arguments]: Use gexps.  Remove configure-flags.  Add add-rocm-device-lib-path
phase.
[inputs]: Add libdrm.  Update style.
[native-inputs]: Add pkg-config.  Update style.
(rocm-opencl-runtime): Update to 5.6.0.
[source]{patches}: Remove noopencl patch.
[arguments]{configure-flags}: Add BUILD_ICD=OFF and
FILE_REORG_BACKWARD_COMPATIBILITY=OFF flags.
[inputs]: Add opencl-headers.
(rocminfo): Update to 5.6.0.
[arguments]: Use gexps.  Use search-input-file instead of assoc-ref and which.
(rocm-bandwidth-test): Update to 5.6.0.
[source]{patches}: Add fix-includes patch.
* gnu/packages/patches/rocm-comgr-3.1.0-dependencies.patch,
gnu/packages/patches/rocm-opencl-runtime-4.3-noclinfo.patch: Update patches.
* gnu/packages/patches/llvm-roc-4.0.0-remove-isystem-usr-include.patch,
gnu/packages/patches/llvm-roc-5.0.0-linkdl.patch,
gnu/packages/patches/rocm-opencl-runtime-4.3-noopencl.patch: Delete files.
* gnu/packages/patches/rocm-bandwidth-test-5.5.0-fix-includes.patch,
gnu/packages/patches/rocclr-5.6.0-enable-gfx800.patch: New files.
* gnu/local.mk (dist_patch_DATA): Update patches.
 2023-07-11 12:21:00 -04:00
Ahmad Draidi
0cce3ac36e
gnu: Add emacs-sakura-theme. 
* gnu/packages/emacs-xyz.scm (emacs-sakura-theme): New variable.

Signed-off-by: Andrew Tropin <andrew@trop.in>
 2023-07-11 20:06:12 +04:00
Ahmad Draidi
ebaeeacc84
gnu: Add emacs-abyss-theme. 
* gnu/packages/emacs-xyz.scm (emacs-abyss-theme): New variable.

Signed-off-by: Andrew Tropin <andrew@trop.in>
 2023-07-11 20:06:11 +04:00
Ahmad Draidi
3b77a06f3b
gnu: Add emacs-starlit-theme. 
* gnu/packages/emacs-xyz.scm (emacs-starlit-theme): New variable.

Signed-off-by: Andrew Tropin <andrew@trop.in>
 2023-07-11 20:06:10 +04:00
Ahmad Draidi
686a3ca7c5
gnu: emacs-dumbparens: Update to 0-1.59bb5ae. 
* gnu/packages/emacs-xyz.scm (emacs-dumbparens): Update to 0-1.59bb5ae.
[source]: Download from new upstream URL.
[home-page]: Use new home-page.

Signed-off-by: Andrew Tropin <andrew@trop.in>
 2023-07-11 20:06:09 +04:00
Ahmad Draidi
355391419b
gnu: emacs-scroll-on-drag: Update to 0.1-2.179c2ac. 
* gnu/packages/emacs-xyz.scm (emacs-scroll-on-drag): Update to 0.1-2.179c2ac.
[source]: Download from new upstream URL.
[home-page]: Use new home-page.

Signed-off-by: Andrew Tropin <andrew@trop.in>
 2023-07-11 20:06:08 +04:00
Ahmad Draidi
7c6237ccbb
gnu: emacs-mode-line-idle: Update to 0.2-0.1dc0115. 
* gnu/packages/emacs-xyz.scm (emacs-mode-line-idle): Update to 0.2-0.1dc0115.
[source]: Download from new upstream URL.
[home-page]: Use new home-page.

Signed-off-by: Andrew Tropin <andrew@trop.in>
 2023-07-11 20:06:07 +04:00
Ahmad Draidi
e7d554c8ad
gnu: emacs-undo-fu-session: Update to 0.6-0.a6c4f73. 
* gnu/packages/emacs-xyz.scm (emacs-undo-fu-session): Update to 0.6-0.a6c4f73.
[source]: Download from new upstream URL.
[arguments]: Update #:test-command. Fix tests by adding
'--eval (setq undo-fu-session-ignore-temp-files nil)' to #:test-command.
[home-page]: Use new home-page.

Signed-off-by: Andrew Tropin <andrew@trop.in>
 2023-07-11 20:06:06 +04:00
Ahmad Draidi
9a214850f0
gnu: emacs-undo-fu: Update to 0.5-0.0e22308. 
* gnu/packages/emacs-xyz.scm (emacs-undo-fu): Update to 0.5-0.0e22308.
[source]: Download from new upstream URL.
[home-page]: Use new home-page.

Signed-off-by: Andrew Tropin <andrew@trop.in>
 2023-07-11 20:06:05 +04:00
Ahmad Draidi
507d2648c1
gnu: emacs-spell-fu: Update to 0.3-1.67a26b7. 
* gnu/packages/emacs-xyz.scm (emacs-spell-fu): Update to 0.3-1.67a26b7.
[source]: Download from new upstream URL.
[home-page]: Use new home-page.

Signed-off-by: Andrew Tropin <andrew@trop.in>
 2023-07-11 20:06:04 +04:00
Paul A. Patience
7858b74b77
gnu: gnuplot: Update to 5.4.8. 
* gnu/packages/maths.scm (gnuplot): Update to 5.4.8.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
 2023-07-11 16:58:04 +02:00
Paul A. Patience
7761495ccb
gnu: gmsh: Update to 4.11.1. 
* gnu/packages/maths.scm (gmsh): Update to 4.11.1.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
 2023-07-11 16:15:01 +02:00
Bruno Victal
fc25bd72b2
gnu: desktop-file-utils: Format description. 
* gnu/packages/freedesktop.scm (desktop-file-utils)[description]: Format
description.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
 2023-07-11 16:12:25 +02:00
Bruno Victal
e12a0cb3db
gnu: guile-hashing: Fix description. 
* gnu/packages/guile-xyz.scm (guile-hashing)[description]: Fix typo.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
 2023-07-11 16:12:23 +02:00
Timotej Lazar
355e3c6e1c
gnu: rxvt-unicode: Use helper procedure to make desktop files. 
* gnu/packages/xdisorg.scm (rxvt-unicode)[arguments]: Replace custom code with
make-desktop-entry-file. Specify categories and icon in desktop files.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
 2023-07-11 16:06:52 +02:00
Timotej Lazar
f969f45fa8
gnu: rxvt-unicode: Use new package style. 
* gnu/packages/xdisorg.scm (rxvt-unicode)[arguments]: Use gexps.
[inputs]: Drop input labels.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
 2023-07-11 16:06:51 +02:00
Timotej Lazar
f0dfb2a8e9
gnu: rxvt-unicode: Update to 9.31 [fixes CVE-2022-4170]. 
* gnu/packages/xdisorg.scm (rxvt-unicode): Update to 9.31.
[inputs]: Add libxext.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
 2023-07-11 16:06:49 +02:00
Timotej Lazar
09d1e04230
gnu: qbittorrent{,-nox}: Use qt-build-system. 
CMake is now upstream’s preferred build system.

* gnu/packages/bittorrent.scm (qbittorrent)[build-system]: Use qt-build-system.
[arguments]: Drop custom wrap phase. (Re-)enable tests.
[inputs]: Remove input labels. Drop qtbase-5.
[native-inputs]: Drop pkg-config.
(qbittorrent-nox)[arguments]: Adjust configure-flags. Keep the wrap-qt phase
since the non-GUI version is also a QT program.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
 2023-07-11 16:05:50 +02:00
Timotej Lazar
f561e8a0ed
gnu: qbittorrent: Update to 4.5.4. 
* gnu/packages/bittorrent.scm (qbittorrent): Update to 4.5.4.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
 2023-07-11 16:05:48 +02:00
Zac Berkowitz
b716d17e1c
gnu: mit-scheme: Fix building 
* gnu/packages/scheme.scm (mit-scheme)[arguments] Add 'set-env
  before 'configure, setting -Wno-array-parameter in CFLAGS and
  CPPFLAGS to ignore warning causing build break.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
 2023-07-11 16:04:44 +02:00
Andy Tai
b27d3265c6
gnu: xorriso: Update to 1.5.6.pl02 
* gnu/packages/cdrom.scm (xorriso): Update to 1.5.6.pl02

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
 2023-07-11 15:53:26 +02:00
Philippe SWARTVAGHER
fa7d3972f8
gnu: hwloc: Update to 2.9.2. 
* gnu/packages/mpi.scm (hwloc-2): Update to 2.9.2.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
 2023-07-11 15:52:26 +02:00
Morgan Smith
16c5c7c5c1
gnu: guile-chickadee: Change license to Apache 2.0. 
* gnu/packages/game-development.scm (guile-chickadee)[license]: Change to
Apache 2.0 (asl2.0).

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
 2023-07-11 15:47:56 +02:00
Jonathan Brielmaier
67e22584fa
gnu: icedove: Update to 102.13.0. 
* gnu/packages/gnuzilla.scm (icedove): Update to 102.13.0.
 2023-07-10 21:08:29 +02:00
Leo Famulari
4a508a628f
gnu: opustags: Update to 1.9.0. 
* gnu/packages/music.scm (opustags): Update to 1.9.0.
[native-inputs]: Add perl-test-deep.
[arguments]: Adjust accordingly.
 2023-07-10 13:42:57 -04:00
Andreas Enge
a37d2e9187
gnu: pari-gp: Update to 2.15.4. 
* gnu/packages/algebra.scm (pari-gp): Update to 2.15.4.
 2023-07-10 19:32:45 +02:00
John Kehayias
ef0a45c641
gnu: openrgb: Update to 0.9. 
* gnu/packages/hardware.scm (openrgb): Update to 0.9.
* gnu/packages/patches/openrgb-unbundle-hueplusplus.patch: Update.
 2023-07-10 11:21:31 -04:00
Paul A. Patience
b7be0a999d
gnu: bpython: Update to 0.24. 
* gnu/packages/python-xyz.scm (bpython): Update to 0.24.
[propagated-inputs]: Remove python-six.

Signed-off-by: Christopher Baines <mail@cbaines.net>
 2023-07-10 12:39:35 +01:00
Paul A. Patience
6d2ca5dd04
gnu: python-curtsies: Update to 0.4.1. 
* gnu/packages/terminals.scm (python-curtsies): Update to 0.4.1.

Signed-off-by: Christopher Baines <mail@cbaines.net>
 2023-07-10 12:39:35 +01:00
Paul A. Patience
95af7f7c9b
gnu: python-blessed: Add missing dependency. 
Fixes the build of python-curtsies.

The python-six dependency was accidentally removed in commit
9e1cbc62e5.

* gnu/packages/python-xyz.scm (python-blessed)[propagated-inputs]: Add
python-six.

Signed-off-by: Christopher Baines <mail@cbaines.net>
 2023-07-10 12:39:35 +01:00
Christopher Baines
81a2a0f8d1
gnu: ruby-hamster: Fix build. 
* gnu/packages/ruby.scm (ruby-hamster)[arguments]: Run tests with ruby-2.7 and
update style.
 2023-07-10 12:39:35 +01:00
Yovan Naumovski via Guix-patches via
fd2a01d564
gnu: ruby-terraform: Update to 1.7.0. 
* gnu/packages/ruby.scm (ruby-terraform): Update to 1.7.0.
[source]: Use git-fetch.
[arguments]: Enable tests.
[native-inputs]: Add ruby-rspec, ruby-faker, ruby-simplecov.
[propagated-inputs]: Add ruby-immutable-struct.
 2023-07-10 12:39:35 +01:00
Yovan Naumovski via Guix-patches via
0a6f2b8f31
gnu: Add ruby-faker. 
* gnu/packages/ruby.scm (ruby-faker): New variable.
 2023-07-10 12:39:35 +01:00
Yovan Naumovski via Guix-patches via
8509e977b4
gnu: Add ruby-immutable-struct. 
* gnu/packages/ruby.scm (ruby-immutable-struct): New variable.
 2023-07-10 12:39:35 +01:00
Yovan Naumovski via Guix-patches via
79bbf07ecc
gnu: ruby-lino: Update to 3.1.0. 
* gnu/packages/ruby.scm (ruby-lino): Update to 3.1.0.
 2023-07-10 12:39:35 +01:00
Yovan Naumovski via Guix-patches via
ab34f9af29
gnu: ruby-i18n: Update to 1.13.0. 
* gnu/packages/ruby.scm (ruby-i18n): Update to 1.13.0.
 2023-07-10 12:39:35 +01:00
gemmaro
83444f2940
gnu: ruby-net-ssh: Update to 7.1.0. 
* gnu/packages/ruby.scm (ruby-net-ssh): Update to 7.1.0.
[source]: Switch to git-fetch for tests.
[native-inputs]: Add ruby-bcrypt-pbkdf, ruby-ed25519, ruby-rbnacl, and
ruby-x25519 for tests with optional dependencies.

Signed-off-by: Christopher Baines <mail@cbaines.net>
 2023-07-10 12:39:35 +01:00
gemmaro
5a59f77e76
gnu: Add ruby-x25519. 
* gnu/packages/ruby.scm (ruby-x25519): New variable.

Signed-off-by: Christopher Baines <mail@cbaines.net>
 2023-07-10 12:39:34 +01:00
gemmaro
f6e6d5981f
gnu: ruby-rbnacl: Use new package style. 
* gnu/packages/ruby.scm (ruby-rbnacl): Use new package style.
[arguments]: Use gexp.
[source, propagated-inputs, inputs, native-inputs]: Restyle format.

Signed-off-by: Christopher Baines <mail@cbaines.net>
 2023-07-10 12:39:34 +01:00
gemmaro
98eaf21d4a
gnu: ruby-rbnacl: Update to 7.1.1. 
* gnu/packages/ruby.scm (ruby-rbnacl): Update to 7.1.1.
[home-page]: Update to current home page link.

Signed-off-by: Christopher Baines <mail@cbaines.net>
 2023-07-10 12:39:34 +01:00
gemmaro
6a4ae3528f
gnu: Add ruby-ed25519. 
* gnu/packages/ruby.scm (ruby-ed25519): New variable.

Signed-off-by: Christopher Baines <mail@cbaines.net>
 2023-07-10 12:39:34 +01:00
gemmaro
40bac1a557
gnu: Add ruby-bcrypt-pbkdf. 
* gnu/packages/ruby.scm (ruby-bcrypt-pbkdf): New variable.

Signed-off-by: Christopher Baines <mail@cbaines.net>
 2023-07-10 12:39:34 +01:00
Ricardo Wurmus
d0296970fb
gnu: Add python-captum. 
* gnu/packages/machine-learning.scm (python-captum): New variable.
 2023-07-10 13:13:45 +02:00
kiasoc5
e3d9d896b5
gnu: Add python-flask-seasurf. 
* gnu/packages/python-web.scm (python-flask-seasurf): New variable.

Co-authored-by: Ricardo Wurmus <rekado@elephly.net>
 2023-07-10 13:13:45 +02:00
kiasoc5
4181835a52
gnu: Add python-flask-compress. 
* gnu/packages/python-web.scm (python-flask-compress): New variable.

Co-authored-by: Ricardo Wurmus <rekado@elephly.net>
 2023-07-10 13:13:45 +02:00
Tobias Geerinckx-Rice
8b38d180ec
gnu: ndisc6: Update to 1.0.7. 
* gnu/packages/networking.scm (ndisc6): Update to 1.0.7.
 2023-07-09 02:00:01 +02:00
Tobias Geerinckx-Rice
5ac5d7c86a
gnu: bpftrace: Update to 0.18.0. 
* gnu/packages/linux.scm (bpftrace): Update to 0.18.0.
 2023-07-09 02:00:01 +02:00
Pierre Neidhardt
1944b3baf4
gnu: sbcl-ospm: Update to 0.0.2. 
* gnu/packages/lisp-xyz.scm (sbcl-ospm): Update to 0.0.2.
 2023-07-10 12:30:06 +02:00
Efraim Flashner
c4a89a6d6b
gnu: ruby-ruby-memcheck: Skip tests when cross-compiling. 
* gnu/packages/ruby.scm (ruby-ruby-memcheck)[arguments]: Adjust #:tests?
to skip tests when cross-compiling.
 2023-07-10 12:01:38 +03:00
Efraim Flashner
ad80cfe0cb
gnu: chatty: Add missing input. 
* gnu/packages/messaging.scm (chatty)[native-inputs]: Add itstool.
 2023-07-10 11:56:50 +03:00
Efraim Flashner
997f7a71a6
gnu: webkitgtk: Fix building on i686-linux. 
* gnu/packages/webkit.scm (webkitgtk)[arguments]: When building for
i686-linux add a phase to not include optimizations used by
x86_64-linux.
 2023-07-10 10:57:51 +03:00
Mike Delago
126a91888c
gnu: cl-rove: Update to 0.10.0-1.6a5dfcd. 
* gnu/packages/lisp-check.scm (sbcl-rove): Update to 0.10.0-1.6a5dfcd.

Signed-off-by: Guillaume Le Vaillant <glv@posteo.net>
 2023-07-10 09:55:33 +02:00
Artyom Bologov
1c194cd2bb
gnu: cl-spinneret: Update to 3.0-6.d4398b5. 
* gnu/packages/lisp-xyz.scm (sbcl-spinneret): Update to 3.0-6.d4398b5.

Signed-off-by: Guillaume Le Vaillant <glv@posteo.net>
 2023-07-10 09:55:33 +02:00
Michael Ford
ca6e688883
gnu: electrum: Update to 4.4.5. 
* gnu/packages/finance.scm (electrum): Update to 4.4.5.

Signed-off-by: Guillaume Le Vaillant <glv@posteo.net>
 2023-07-10 09:55:33 +02:00
Michael Ford
84e876f1f0
gnu: ledger: Update to 3.3.2. 
* gnu/packages/finance.scm (ledger): Update to 3.3.2.

Signed-off-by: Guillaume Le Vaillant <glv@posteo.net>
 2023-07-10 09:55:33 +02:00
Michael Ford
a5cf461394
gnu: homebank: Update to 5.6.5. 
* gnu/packages/finance.scm (homebank): Update to 5.6.5.

Signed-off-by: Guillaume Le Vaillant <glv@posteo.net>
 2023-07-10 09:55:33 +02:00
Peter Polidoro
3c9984b860
gnu: kicad: Update to 7.0.6. 
* gnu/packages/engineering.scm (kicad): Update to 7.0.6.

Signed-off-by: Guillaume Le Vaillant <glv@posteo.net>
 2023-07-10 09:55:32 +02:00
Christopher Baines
2ccf3eb495
gnu: ruby-ruby-memcheck: Update to 1.3.2. 
* gnu/packages/ruby.scm (ruby-ruby-memcheck): Update to 1.3.2.
[arguments]: Disable tests on x86-32.
 2023-07-10 08:26:05 +01:00
Christopher Baines
9c164d72b2
gnu: ruby-safe-yaml: Fix build. 
* gnu/packages/ruby.scm (ruby-safe-yaml)[arguments]: Build with #:ruby
ruby-2.7 and update style.
 2023-07-10 08:26:05 +01:00
Christopher Baines
e13dc6a024
gnu: ruby-sass: Update to 3.7.4. 
* gnu/packages/ruby.scm (ruby-sass): Update to 3.7.4.
[source]: Switch to git repository.
[arguments]: Specify #:test-target "test:ruby".
 2023-07-10 08:26:05 +01:00
Christopher Baines
cd0daf65a0
gnu: ruby-sass-spec: Remove ruby-terminfo input. 
As I don't think it's necessary.

* gnu/packages/ruby.scm (ruby-sass-spec)[propagated-inputs]: Remove
ruby-terminfo.
[arguments]: Update style.
 2023-07-10 08:26:04 +01:00
Christopher Baines
a1e6a360a5
gnu: ruby-terminfo: Update to 0.2. 
* gnu/packages/ruby.scm (ruby-terminfo): Update to 0.2.
[source]: Switch to source tarball.
[arguments]: Update accordingly.
 2023-07-10 08:26:04 +01:00
Christopher Baines
3f91e3e81d
gnu: ruby-flores: Fix build. 
There's a single test failure when the tests are run with ruby 3.1.

* gnu/packages/ruby.scm (ruby-flores)[arguments]: Add #:ruby ruby-2.7 and use
it.
 2023-07-10 08:26:04 +01:00
Christopher Baines
97a934d45f
gnu: ruby-yard: Refactor package and some dependencies. 
Replace ruby-yard and ruby-yard-with-tests with ruby-yard and
ruby-yard/minimal.  This introduced some cycles, so add some additional
minimal variants to avoid this.

* gnu/packages/ruby.scm (ruby-asciidoctor/minimal, ruby-test-unit/minimal,
ruby-yard/minimal): New variables.
(ruby-rubygems-tasks)[native-inputs]: Remove unnecessary ruby-spec and
ruby-yard.
(ruby-locale, ruby-gettext, ruby-tdiff, ruby-nokogiri-diff,
ruby-public-suffix, ruby-addressable)[native-inputs]:
Switch to ruby-yard/minimal.
(ruby-metaclass)[native-inputs]: Switch to ruby-test-unit/minimal.
(ruby-yard): Update to 0.9.34.
[arguments]: Update style, don't disable tests, specify #:test-target, and
patch spec/cli/diff_spec.rb.
[native-inputs]: Add from ruby-yard-with-tests.
(ruby-yard-with-tests): Remove variable.
 2023-07-10 08:26:04 +01:00
Christopher Baines
a6e0ecfa77
gnu: ruby-version-gem: Update to 1.1.3. 
* gnu/packages/ruby.scm (ruby-version-gem): Update to 1.1.3.
[arguments]: Drop 'disable-problematic-tests phase.
 2023-07-10 08:26:04 +01:00
Christopher Baines
29ecffebbf
gnu: ruby-rspec-block-is-expected: Update to 1.0.5. 
* gnu/packages/ruby.scm (ruby-rspec-block-is-expected): Update to 1.0.5.
[arguments]: Don't attempt to sign gem.
 2023-07-10 08:26:04 +01:00
Christopher Baines
411791ea40
gnu: ruby-minitest-tu-shim: Fix build. 
* gnu/packages/ruby.scm (ruby-minitest-tu-shim)[arguments]: Update style.
[propagated-inputs]: Update style.
[native-inputs]: Use ruby-hoe-3.
 2023-07-10 08:26:04 +01:00
Christopher Baines
f8827a4416
gnu: ruby-fast-gettext: Update to 2.3.0. 
* gnu/packages/ruby.scm (ruby-fast-gettext): Update to 2.3.0.
[arguments]: Update style and remove now unnecessary phases.
[native-inputs]: Add ruby-rubocop-packaging.
 2023-07-10 08:26:04 +01:00
Christopher Baines
c078d78714
gnu: ruby-chunky-png: Update to 1.4.0. 
* gnu/packages/ruby.scm (ruby-chunky-png): Update to 1.4.0.
[arguments]: Update style.
 2023-07-10 08:26:04 +01:00
Christopher Baines
7c94bfddb3
gnu: Add ruby-rubocop-packaging. 
* gnu/packages/ruby.scm (ruby-rubocop-packaging): New variable.
 2023-07-10 08:26:04 +01:00
Christopher Baines
a6cc172aa5
gnu: ruby-hoe-git: Fix build. 
* gnu/packages/ruby.scm (ruby-hoe-git)[propagated-inputs]: Use ruby-hoe-3.
 2023-07-10 08:26:04 +01:00
Christopher Baines
6a7e758aed
gnu: ruby-heredoc-unindent: Fix build. 
* gnu/packages/ruby.scm (ruby-heredoc-unindent)[native-inputs]: Use
ruby-hoe-3.
 2023-07-10 08:26:03 +01:00
Christopher Baines
d0d3c6c914
gnu: Add ruby-hoe-3. 
Some packages tests fail due to Hoe not parsing the README, so this provides a
way around that.

* gnu/packages/ruby.scm (ruby-hoe-3): New variable.
 2023-07-10 08:26:03 +01:00
Christopher Baines
135c9af111
gnu: ruby-mapping: Fix build. 
* gnu/packages/ruby.scm (ruby-mapping)[arguments]: Add 'patch phase.
 2023-07-10 08:26:03 +01:00
Christopher Baines
6f57245943
gnu: ruby-minitest-4: Fix build. 
* gnu/packages/ruby.scm (ruby-minitest-4)[arguments]: Patch a failing test and
update style.
[native-inputs]: Add ruby-minitest.
 2023-07-10 08:26:03 +01:00
Christopher Baines
d3d4cdf260
gnu: ruby-stackprof: Always skip the GC test. 
As this is very flaky.

* gnu/packages/ruby.scm (ruby-stackprof)[arguments]: Tweak skipping tests.
 2023-07-10 08:26:03 +01:00
Christopher Baines
3f14b1b4f7
gnu: ruby-ruby-parser: Update to 3.20.2. 
* gnu/packages/ruby.scm (ruby-ruby-parser): Update to 3.20.2.
[arguments]: Patch Rakefile.
[native-inputs]: Add bison and ruby-minitest.
 2023-07-10 08:26:03 +01:00
Christopher Baines
ac0d3428fb
gnu: Remove ruby-minitest-5.15. 
This variant is now unused.

* gnu/packages/ruby.scm (ruby-minitest-5.15): Remove variable.
 2023-07-10 08:26:03 +01:00
Christopher Baines
701608c496
gnu: ruby-byebug: Fix build. 
* gnu/packages/ruby.scm (ruby-byebug)[arguments]: Update style and skip some
failing tests.
[native-inputs]: Use ruby-minitest rather than ruby-minitest-5.15.
 2023-07-10 08:26:03 +01:00
Christopher Baines
52cbeffa59
gnu: swagger-diff: Update to 2.0.0. 
* gnu/packages/ruby.scm (swagger-diff): Update to 2.0.0.
[arguments]: Update style.
 2023-07-10 08:26:03 +01:00
Christopher Baines
68322974bf
gnu: ruby-text-hyphen: Update to 1.5.0. 
* gnu/packages/ruby.scm (ruby-text-hyphen): Update to 1.5.0.
 2023-07-10 08:26:03 +01:00
Christopher Baines
f286d26f53
gnu: ruby-slop: Update to 4.10.1. 
* gnu/packages/ruby.scm (ruby-slop): Update to 4.10.1.
[native-inputs]: Remove.
 2023-07-10 08:26:02 +01:00
Christopher Baines
396d1a7a1f
gnu: ruby-sexp-processor: Update to 4.17.0. 
* gnu/packages/ruby.scm (ruby-sexp-processor): Update to 4.17.0.
[native-inputs]: Add ruby-minitest and ruby-minitest-proveit.
 2023-07-10 08:26:02 +01:00
Christopher Baines
e9ba11e190
gnu: ruby-net-scp: Fix build. 
* gnu/packages/ruby.scm (ruby-net-scp)[native-inputs]: Use ruby-mocha-1.
 2023-07-10 08:26:02 +01:00
Christopher Baines
403d721d56
gnu: ruby-net-http-persistent: Update to 4.0.2. 
* gnu/packages/ruby.scm (ruby-net-http-persistent): Update to 4.0.2.
[native-inputs]: Add ruby-rake-manifest.
 2023-07-10 08:26:02 +01:00
Christopher Baines
c5d10ca52a
gnu: ruby-connection-pool: Update to 2.4.1. 
* gnu/packages/ruby.scm (ruby-connection-pool): Update to 2.4.1.
[arguments]: Remove ruby-standard dependency.
 2023-07-10 08:26:02 +01:00
Christopher Baines
06a83348c3
gnu: ruby-net-http-digest-auth: Fix build. 
* gnu/packages/ruby.scm (ruby-net-http-digest-auth)[native-inputs]: Add
ruby-minitest.
 2023-07-10 08:26:02 +01:00
Christopher Baines
a820891c89
gnu: ruby-spy: Remove ruby-pry-byebug input. 
* gnu/packages/ruby.scm (ruby-spy)[arguments]: Remove use of pry-byebug.
[native-inputs]: Remove ruby-pry-byebug.
 2023-07-10 08:26:02 +01:00
Christopher Baines
9bdb1c4baa
gnu: ruby-language-server-protocol: Remove ruby-pry-byebug dependency. 
* gnu/packages/ruby.scm (ruby-language-server-protocol)[arguments]: Add
'remove-unnecessary-dependencies phase.
[native-inputs]: Remove ruby-pry-byebug.
 2023-07-10 08:26:02 +01:00
Christopher Baines
9271bb9bfd
gnu: ruby-sorbet-runtime: Remove ruby-pry-byebug input. 
As byebug is for Ruby 2.

* gnu/packages/ruby.scm (ruby-sorbet-runtime)[native-inputs]: Remove
ruby-pry-byebug.
 2023-07-10 08:26:02 +01:00
Christopher Baines
b81962cba4
gnu: ruby-octokit: Update to 6.1.1. 
* gnu/packages/ruby.scm (ruby-octokit): Update to 6.1.1.
[arguments]: Remove pry-byebug dependency.
[native-inputs]: Remove pry-byebug.
 2023-07-10 08:26:02 +01:00
Christopher Baines
0b7258ecc5
gnu: ruby-jwt: Update to 2.7.1. 
* gnu/packages/ruby.scm (ruby-jwt): Update to 2.7.1.
[source]: Switch to git.
[arguments]: Remove more unnecessary dependencies, and update style.
 2023-07-10 08:26:01 +01:00
Christopher Baines
2a040300dc
gnu: ruby-multi-json: Fix build. 
* gnu/packages/ruby.scm (ruby-multi-json)[arguments]: Skip tests and update
style.
 2023-07-10 08:26:01 +01:00
Christopher Baines
ecd9d36a33
gnu: ruby-braintree: Update to 4.12.0. 
* gnu/packages/ruby.scm (ruby-braintree): Update to 4.12.0.
[arguments]: Tweak relax-requirements phase and update style.
 2023-07-10 08:26:01 +01:00
Christopher Baines
6937663eaa
gnu: ruby-benchmark-ips: Update to 2.12.0. 
* gnu/packages/ruby.scm (ruby-benchmark-ips): Update to 2.12.0.
[source]: Switch to git repository.
[arguments]: Patch Gemfile and gemspec.
 2023-07-10 08:26:01 +01:00
Christopher Baines
8cd697f8ff
gnu: ruby-awesome-print: Update to 1.9.2. 
* gnu/packages/ruby.scm (ruby-awesome-print): Update to 1.9.2.
[arguments]: Update style.
 2023-07-10 08:26:01 +01:00
Christopher Baines
6d82239a5f
gnu: ronn-ng: Fix build. 
* gnu/packages/groff.scm (ronn-ng)[arguments]: Add 'patch-test phase and
update style.
 2023-07-10 08:26:01 +01:00
Christopher Baines
7ed11ca491
gnu: facter: Update to 4.4.1. 
* gnu/packages/admin.scm (facter): Update to 4.4.1.
[arguments,inputs]: Update style.
[home-page]: Update.
 2023-07-10 08:26:01 +01:00
Christopher Baines
e0a2398559
gnu: ruby-rb-inotify: Update to 0.10.1. 
* gnu/packages/ruby.scm (ruby-rb-inotify): Update to 0.10.1.
[arguments]: Update style.
 2023-07-10 08:26:01 +01:00
Christopher Baines
93a311d760
gnu: ruby-bibtex-ruby: Remove ruby-byebug dependency. 
byebug is for Ruby 2, so it's best to avoid it.

* gnu/packages/ruby.scm (ruby-bibtex-ruby)[native-inputs]: Remove ruby-byebug.
 2023-07-10 08:26:01 +01:00
Christopher Baines
5b47196d3a
gnu: ruby-wapiti: Update to 2.1.0. 
* gnu/packages/ruby.scm (ruby-wapiti): Update to 2.1.0.
[native-inputs]: Remove ruby-byebug.
 2023-07-10 08:26:01 +01:00