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141 Commits

Author SHA1 Message Date
Vinicius Monego
b2d433d485
gnu: python-pytensor: Update to 2.18.1. 
* gnu/packages/python-science.scm (python-pytensor): Update to 2.18.1.

Change-Id: I7992d8a00c378c008995df3d026c3e05c235ae6d
 2023-12-05 16:41:52 -03:00
Efraim Flashner
504e621445
gnu: python-gpy: Adjust for newer python. 
* gnu/packages/python-science.scm (python-gpy)[source]: Add snippet to
adjust python module imports.

Change-Id: I0772febb97d75e0a0caa331913c9e7453d11e70d
 2023-12-05 13:43:42 +02:00
Felix Gruber
8803100072
gnu: Add python-pyfma. 
* gnu/packages/python-science.scm (python-pyfma): New variable.

Change-Id: I354d3d56f2799c8c9ac9b868fcacbf88dcc5c25d
Signed-off-by: Ludovic Courtès <ludo@gnu.org>
 2023-12-04 22:26:37 +01:00
Felix Gruber
f76ffc3ea6
gnu: Add python-meshzoo. 
* gnu/packages/python-science.scm (python-meshzoo): New variable.

Change-Id: Ia41d62ebd6c4cb3c22ebe0668c36279a9ca191ac
Signed-off-by: Ludovic Courtès <ludo@gnu.org>
 2023-12-04 22:26:37 +01:00
Troy Figiel
416ae9ad89
gnu: Add python-tdda. 
* gnu/packages/python-science.scm (python-tdda): New variable.

Change-Id: I456aa236b3348e5b990289d8a381c2d5276a12f1
Signed-off-by: Ludovic Courtès <ludo@gnu.org>
 2023-11-15 18:29:38 +01:00
Vinicius Monego
43d9fa0802
gnu: python-pytensor: Update to 2.17.3. 
* gnu/packages/python-science.scm (python-pytensor): Update to 2.17.3.

Change-Id: I2843aca1df4d43883bf643e6e363bd3700202c45
 2023-11-03 19:25:36 -03:00
Vinicius Monego
a7d56852e3
gnu: Add python-salib. 
* gnu/packages/python-science.scm (python-salib): New variable.
 2023-11-03 19:25:35 -03:00
Paul A. Patience
d07e75a4ce
gnu: python-trimesh: Update to 3.23.5. 
* gnu/packages/python-science.scm (python-trimesh): Update to 3.23.5.

Signed-off-by: Christopher Baines <mail@cbaines.net>
 2023-10-17 10:26:55 +01:00
Paul A. Patience
4aa6a924b2
gnu: python-pyvista: Update to 0.42.3. 
* gnu/packages/python-science.scm (python-pyvista): Update to 0.42.3.

Signed-off-by: Christopher Baines <mail@cbaines.net>
 2023-10-17 10:26:23 +01:00
Nicolas Graves
e9c0bb0341
gnu: python-distributed: Disable failing tests. 
* gnu/packages/python-science.scm (python-distributed): Disable failing tests.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
 2023-10-08 23:43:50 +02:00
Vinicius Monego
04b31ce1f8
gnu: Add python-numpoly. 
* gnu/packages/python-science.scm (python-numpoly): New variable.
 2023-09-30 10:37:47 -03:00
Vinicius Monego
645aeaf52d
gnu: python-pytensor: Update to 2.14.2. 
* gnu/packages/python-science.scm (python-pytensor): Update to 2.14.2.
[native-inputs]: Add python-pytest-mock.
 2023-08-05 18:40:01 -03:00
Vinicius Monego
746416b44a
gnu: Add python-scikit-fem. 
* gnu/packages/python-science.scm (python-scikit-fem): New variable.
 2023-07-29 14:25:03 -03:00
Ricardo Wurmus
01412c6c6a
gnu: python-distributed: Update to 2023.7.0. 
* gnu/packages/python-science.scm (python-distributed): Update to 2023.7.0.
 2023-07-15 13:36:02 +02:00
Ricardo Wurmus
ea81a0417a
gnu: Add python-plotnine. 
* gnu/packages/python-science.scm (python-plotnine): New variable.
 2023-07-13 22:29:24 +02:00
Arun Isaac
d4e9ad2d42
gnu: python-pandas-flavor: Update to 0.5.0. 
* gnu/packages/python-science.scm (python-pandas-flavor): Update to 0.5.0.
[propagated-inputs]: Add python-lazy-loader and python-packaging.
[home-page]: Update.
 2023-06-29 17:01:56 +01:00
Ricardo Wurmus
2a7ca17068
gnu: python-distributed: Disable timeout test. 
* gnu/packages/python-science.scm (python-distributed)[arguments]: Disable
test_nanny_timeout, because it times out.
 2023-06-29 12:01:22 +02:00
Paul A. Patience
5cf9880dd4
gnu: python-trimesh: Update to 3.22.1. 
* gnu/packages/python-science.scm (python-trimesh): Update to 3.22.1.
[arguments]<#:phases>: Update path in 'fix-build' phase.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
 2023-06-25 23:46:03 +02:00
Vinicius Monego
cbcab52fd1
gnu: Add python-pytensor. 
* gnu/packages/python-science.scm (python-pytensor): New variable.
 2023-06-25 10:48:05 -03:00
Vinicius Monego
a38f5a71ad
gnu: Add python-xarray-einstats. 
* gnu/packages/python-science.scm (python-xarray-einstats): New variable.
 2023-06-25 10:43:22 -03:00
Vinicius Monego
b08a1f3ce1
gnu: python-xarray: Update to 2023.6.0. 
* gnu/packages/python-science.scm (python-xarray): Update to 2023.6.0.
[build-system]: Switch to pyproject-build-system.
[arguments]: Do not override the check phase.
 2023-06-25 10:43:22 -03:00
Vinicius Monego
6bc2fbc14c
gnu: Add python-einops. 
* gnu/packages/python-science.scm (python-einops): New variable.
 2023-06-25 10:43:22 -03:00
Paul A. Patience
24fc0d506a
gnu: python-pyvista: Update to 0.39.1. 
* gnu/packages/python-science.scm (python-pyvista): Update to 0.39.1.
[propagated-inputs]: Add python-pooch, remove python-appdirs.

Signed-off-by: Christopher Baines <mail@cbaines.net>
 2023-06-20 22:16:14 +01:00
Ricardo Wurmus
4557c83a7d
gnu: python-distributed: Update to 2023.4.1. 
* gnu/packages/python-science.scm (python-distributed): Update to 2023.4.1.
[source]: Remove snippet.
[arguments]: Update build phase 'versioneer; restore 'sanity-check phase;
simplify custom 'check phase; add 'fix-pytest-config phase; use #:test-flags.
[build-system]: Use pyproject-build-system.
[native-inputs]: Add python-importlib-metadata.
 2023-05-11 15:59:22 +02:00
Ricardo Wurmus
96c51a9dbf
gnu: python-scikit-optimize: Fix build with newer numpy and sklearn. 
* gnu/packages/patches/python-scikit-optimize-1148.patch,
gnu/packages/patches/python-scikit-optimize-1150.patch: New patches.
* gnu/local.mk (dist_patch_DATA): Add them.
* gnu/packages/python-science.scm (python-scikit-optimize)[source]: Fetch with
git and apply patches.
 2023-05-10 19:27:07 +02:00
Efraim Flashner
12c529c071
gnu: python-bottleneck: Honor #:tests? flag. 
* gnu/packages/python-science.scm (python-bottleneck)[arguments]: Adjust
custom 'check phase to honor the #:tests? flag.
 2023-05-08 12:42:10 +03:00
Efraim Flashner
4a23812c7c
gnu: python-bottleneck: Update to 1.3.7. 
* gnu/packages/python-science.scm (python-bottleneck): Update to 1.3.7.
 2023-05-08 12:42:09 +03:00
Ricardo Wurmus
5409ae48af
gnu: python-distributed: Fix build. 
* gnu/packages/python-science.scm (python-distributed)[build-system]: Use
pyproject-build-system.
[arguments]: Hide deprecation warnings from tornado, because they break almost
all tests; disable three more tests.
 2023-04-26 11:17:41 +02:00
Maxim Cournoyer
3bacd3c76a
Merge branch 'master' into core-updates. 
Conflicts:
	gnu/local.mk
	gnu/packages/build-tools.scm
	gnu/packages/certs.scm
	gnu/packages/check.scm
	gnu/packages/compression.scm
	gnu/packages/cups.scm
	gnu/packages/fontutils.scm
	gnu/packages/gnuzilla.scm
	gnu/packages/guile.scm
	gnu/packages/ibus.scm
	gnu/packages/image-processing.scm
	gnu/packages/linux.scm
	gnu/packages/music.scm
	gnu/packages/nss.scm
	gnu/packages/pdf.scm
	gnu/packages/python-xyz.scm
	gnu/packages/qt.scm
	gnu/packages/ruby.scm
	gnu/packages/shells.scm
	gnu/packages/tex.scm
	gnu/packages/video.scm
	gnu/packages/vulkan.scm
	gnu/packages/web.scm
	gnu/packages/webkit.scm
	gnu/packages/wm.scm
 2023-04-14 17:15:08 -04:00
Maxim Cournoyer
a3bfb86738
gnu: python-scipy: Update to 1.10.1. 
* gnu/packages/python-science.scm (python-scipy): Update to 1.10.1.
[build-system]: Use pyproject-build-system.
[arguments]: Add #:build-backend argument.
Remove loosen-requirements, build and install phases.
[native-inputs]: Remove python-pypa-build.
 2023-04-11 17:22:35 -04:00
Ricardo Wurmus
896982f357
gnu: python-scikit-allel: Use pyproject-build-system. 
* gnu/packages/python-science.scm (python-scikit-allel): Move up to create
alphabetic order.
[build-system]: Use pyproject-build-system.
[arguments]: Provide test flags instead of overriding 'check phase; split out
build step into new 'build-ext phase.  Disable roh_mhmm tests.
 2023-03-24 18:23:01 +01:00
Ricardo Wurmus
6d132c5ebf
gnu: Add python-scikit-optimize. 
* gnu/packages/python-science.scm (python-scikit-optimize): New variable.
 2023-03-24 18:03:30 +01:00
Lars-Dominik Braun
34f684371e
gnu: Add python-libneuroml. 
* gnu/packages/python-science.scm (python-libneuroml): New variable.
 2023-03-21 13:58:42 +01:00
Lars-Dominik Braun
9f882daf11
gnu: Add python-pylems. 
* gnu/packages/python-science.scm (python-pylems): New variable.
 2023-03-21 13:56:47 +01:00
Antero Mejr
e24b9b42bc
gnu: Add python-pydicom. 
* gnu/packages/python-science.scm (python-pydicom): New variable.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
 2023-01-08 16:11:45 +01:00
Sharlatan Hellseher
7f380a2e26
gnu: python-sgp4: Move to astronomy. 
* gnu/packages/astronomy.scm: (python-sgp4): Move here from python-science.scm.
  [description]: Expand description, annotate acronyms, add link to CelesTrak.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
 2022-12-05 22:22:20 +01:00
Sharlatan Hellseher
6468d9c131
gnu: python-sgp4: Update to 2.21. 
The latest version passes build on aarch64-linux system.

* gnu/packages/python-science.scm (python-sgp4): Update to 2.21.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
 2022-12-05 22:22:20 +01:00
Navid Afkhami
9ddc4e5b03
gnu: python-msgpack-numpy: Update to 0.4.8. 
* gnu/packages/python-science.scm (python-msgpack-numpy): Update to 0.4.8.
 2022-12-02 15:04:15 +01:00
Navid Afkhami
ba8679fb24
gnu: Add python-tspex. 
* gnu/packages/python-science.scm (python-tspex): New variable.

Co-authored-by: Ricardo Wurmus <rekado@elephly.net>
 2022-11-11 12:12:04 +01:00
Ricardo Wurmus
b19c12c2d7
gnu: Add python-pyts. 
* gnu/packages/python-science.scm (python-pyts): New variable.
 2022-11-04 19:53:31 +01:00
jgart
70cac2829f
gnu: Add python-simple-pid. 
* gnu/packages/python-science.scm (python-simple-pid): New variable.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
 2022-10-18 14:41:10 +02:00
Marius Bakke
f66067febc
Merge branch 'master' into staging 2022-09-29 07:26:37 +02:00
Guillaume Le Vaillant
05c13b3149
gnu: Add python-simplespectral. 
* gnu/packages/python-science.scm (python-simplespectral): New variable.
 2022-09-28 11:31:49 +02:00
Maxim Cournoyer
3c6e220d81
Merge branch 'master' into staging. 
With resolved conflicts in:
	gnu/local.mk
	gnu/packages/crates-io.scm
 2022-09-27 14:27:28 -04:00
Ricardo Wurmus
ab6931483b
gnu: Add python-vaex-core. 
* gnu/packages/python-science.scm (python-vaex-core): New variable.
 2022-09-25 21:24:34 +02:00
Marius Bakke
2266ec5eb1
gnu: python-cython: Remove duplicate version. 
* gnu/packages/python-xyz.scm (python-cython-0.29.32): Remove variable.
* gnu/packages/python-science.scm (python-pandas)[native-inputs]: Change from
PYTHON-CYTHON-0.29.32 to PYTHON-CYTHON.
 2022-09-18 16:26:18 +02:00
Marius Bakke
ce3b51a4c6
gnu: python-pandas: Update to 1.4.4. 
* gnu/packages/python-science.scm (python-pandas): Update to 1.4.4.
[native-inputs]: Change from PYTHON-CYTHON to PYTHON-CYTHON-0.29.32.
 2022-09-18 16:18:36 +02:00
Marius Bakke
888dfc8eb6
gnu: python-scipy: Update to 1.9.1. 
* gnu/packages/python-science.scm (python-scipy): Update to 1.9.1.
[source]: Switch to GIT-FETCH.
[outputs]: Remove.
[arguments]: Don't disable Pythran.  Don't configure OpenBLAS which is now
discovered by pkg-config.  Do a "manual" PEP 517 style build.  Make
install-doc phase conditional on the presence of Sphinx.  Simplify tests.
[propagated-inputs]: Add PYTHON-PYTHRAN.
[native-inputs]: Remove PERL, WHICH, PYTHON-NUMPYDOC,
PYTHON-PYDATA-SPHINX-THEME, PYTHON-SPHINX, and PYTHON-SPHINX-PANELS.  Add
GCC, PKG-CONFIG, PYTHON-PYPA-BUILD and PYTHON-MESON.
 2022-09-16 18:42:21 +02:00
Marius Bakke
8bd7cd34bf
gnu: python-pingouin: Don't pin scikit-learn version. 
* gnu/packages/python-science.scm (python-pingouin)[arguments]: Add phase.
 2022-09-14 21:08:34 +02:00
Marius Bakke
e3ed1d09f9
gnu: python-pingouin: Update to 0.5.2. 
* gnu/packages/python-science.scm (python-pingouin): Update to 0.5.2.
[arguments]: Adjust outdated substitution.
 2022-09-11 23:41:51 +02:00