Commit Graph

1750 Commits

Author SHA1 Message Date
Ricardo Wurmus
acc62073be
gnu: r-ensembldb: Update to 2.16.3.
* gnu/packages/bioconductor.scm (r-ensembldb): Update to 2.16.3.
2021-07-28 22:26:55 +02:00
Tobias Geerinckx-Rice
5079aa2afd
gnu: r-structuralvariantannotation: Update to 1.8.1.
The previous 1.8.0 source tarball has vanished.

* gnu/packages/bioconductor.scm (r-structuralvariantannotation):
Update to 1.8.1.
[propagated-inputs]: Add r-genomicfeatures.
2021-07-25 19:39:11 +02:00
Ricardo Wurmus
4140b66837
gnu: r-gviz: Update to 1.36.2.
* gnu/packages/bioconductor.scm (r-gviz): Update to 1.36.2.
2021-07-10 21:35:29 +02:00
Ricardo Wurmus
564142d25e
gnu: r-catalyst: Update to 1.16.1.
* gnu/packages/bioconductor.scm (r-catalyst): Update to 1.16.1.
2021-07-10 21:35:29 +02:00
Ricardo Wurmus
c4ffceb0c2
gnu: r-rhdf5lib: Update to 1.14.2.
* gnu/packages/bioconductor.scm (r-rhdf5lib): Update to 1.14.2.
2021-07-10 21:35:29 +02:00
Ricardo Wurmus
e957d6c93b
gnu: r-bioconcotk: Update to 1.12.1.
* gnu/packages/bioconductor.scm (r-bioconcotk): Update to 1.12.1.
2021-07-10 21:35:29 +02:00
Ricardo Wurmus
1cbcf54204
gnu: r-biocstyle: Update to 2.20.2.
* gnu/packages/bioconductor.scm (r-biocstyle): Update to 2.20.2.
2021-07-10 21:35:29 +02:00
Ricardo Wurmus
23abd7b6b6
gnu: r-mixomics: Update to 6.16.1.
* gnu/packages/bioconductor.scm (r-mixomics): Update to 6.16.1.
2021-07-10 21:35:29 +02:00
Ricardo Wurmus
3d539883ca
gnu: r-rsubread: Update to 2.6.3.
* gnu/packages/bioconductor.scm (r-rsubread): Update to 2.6.3.
2021-07-10 21:35:29 +02:00
Ricardo Wurmus
a94d1e3b4c
gnu: r-annaffy: Update to 1.64.2.
* gnu/packages/bioconductor.scm (r-annaffy): Update to 1.64.2.
2021-07-10 21:35:29 +02:00
Ricardo Wurmus
344c901a4c
gnu: r-clusterprofiler: Update to 4.0.2.
* gnu/packages/bioconductor.scm (r-clusterprofiler): Update to 4.0.2.
2021-07-10 21:35:29 +02:00
Ricardo Wurmus
a5e6826020
gnu: r-enrichplot: Update to 1.12.2.
* gnu/packages/bioconductor.scm (r-enrichplot): Update to 1.12.2.
2021-07-10 21:35:29 +02:00
Ricardo Wurmus
209642912d
gnu: r-dose: Update to 3.18.1.
* gnu/packages/bioconductor.scm (r-dose): Update to 3.18.1.
2021-07-10 21:35:29 +02:00
Ricardo Wurmus
072533f579
gnu: r-diffbind: Update to 3.2.4.
* gnu/packages/bioconductor.scm (r-diffbind): Update to 3.2.4.
2021-07-10 21:35:28 +02:00
Ricardo Wurmus
9496f34e23
gnu: r-systempiper: Update to 1.26.3.
* gnu/packages/bioconductor.scm (r-systempiper): Update to 1.26.3.
[propagated-inputs]: Add r-crayon and r-s4vectors.
2021-07-10 21:35:28 +02:00
Ricardo Wurmus
ea52ad7d4f
gnu: r-mzr: Update to 2.26.1.
* gnu/packages/bioconductor.scm (r-mzr): Update to 2.26.1.
2021-07-10 21:35:28 +02:00
Ricardo Wurmus
8936e45327
gnu: r-limma: Update to 3.48.1.
* gnu/packages/bioconductor.scm (r-limma): Update to 3.48.1.
2021-07-10 21:35:28 +02:00
Ricardo Wurmus
dfe8e5cca6
gnu: r-genomeinfodb: Update to 1.28.1.
* gnu/packages/bioconductor.scm (r-genomeinfodb): Update to 1.28.1.
2021-07-10 21:35:28 +02:00
Ricardo Wurmus
fd00ed8ff8
gnu: r-ensembldb: Update to 2.16.2.
* gnu/packages/bioconductor.scm (r-ensembldb): Update to 2.16.2.
2021-07-10 21:35:28 +02:00
Ricardo Wurmus
3c60e8d5e5
gnu: r-edaseq: Update to 2.26.1.
* gnu/packages/bioconductor.scm (r-edaseq): Update to 2.26.1.
2021-07-10 21:35:28 +02:00
Ricardo Wurmus
f8d7d07679
gnu: r-biocparallel: Update to 1.26.1.
* gnu/packages/bioconductor.scm (r-biocparallel): Update to 1.26.1.
2021-07-10 21:35:28 +02:00
Ricardo Wurmus
03c9d86432
gnu: r-biomart: Update to 2.48.2.
* gnu/packages/bioconductor.scm (r-biomart): Update to 2.48.2.
2021-07-10 21:35:28 +02:00
Ricardo Wurmus
74bfaf92db
gnu: r-annotationhub: Update to 3.0.1.
* gnu/packages/bioconductor.scm (r-annotationhub): Update to 3.0.1.
2021-07-10 21:35:28 +02:00
Ricardo Wurmus
4aa90cb4b3
gnu: Add r-cistopic-next.
* gnu/packages/bioconductor.scm (r-cistopic-next): New variable.
2021-06-29 12:28:44 +02:00
Ricardo Wurmus
4fb2b5cef8
gnu: r-cistopic: Update to 2.1.0.
* gnu/packages/bioconductor.scm (r-cistopic): Update to 2.1.0.
2021-06-28 19:23:49 +02:00
Ricardo Wurmus
c44271445a
gnu: r-monocle3: Update to 1.0.0.
* gnu/packages/bioconductor.scm (r-monocle3): Update to 1.0.0.
[propagated-inputs]: Add r-batchelor, r-leidenbase, and r-rsample.
2021-06-21 17:53:26 +02:00
Ricardo Wurmus
7209beb694
gnu: Add r-leidenbase.
* gnu/packages/bioconductor.scm (r-leidenbase): New variable.
2021-06-21 17:53:26 +02:00
Ricardo Wurmus
a41bddd29d
gnu: Add r-batchelor.
* gnu/packages/bioconductor.scm (r-batchelor): New variable.
2021-06-21 17:53:26 +02:00
Ricardo Wurmus
278e1c090e
gnu: Add r-residualmatrix.
* gnu/packages/bioconductor.scm (r-residualmatrix): New variable.
2021-06-21 17:53:26 +02:00
Ricardo Wurmus
111aa862ec
gnu: r-monocle3: Add missing input.
* gnu/packages/bioconductor.scm (r-monocle3)[propagated-inputs]: Add
r-assertthat.
2021-06-21 17:53:25 +02:00
Ricardo Wurmus
ef5468ff0e
gnu: Add r-chicago.
* gnu/packages/bioconductor.scm (r-chicago): New variable.
2021-06-17 14:57:47 +02:00
Ricardo Wurmus
88d8b4ece0
gnu: r-gviz: Update to 1.36.1.
* gnu/packages/bioconductor.scm (r-gviz): Update to 1.36.1.
2021-06-17 14:25:36 +02:00
Ricardo Wurmus
45f1e079a5
gnu: r-scater: Update to 1.20.1.
* gnu/packages/bioconductor.scm (r-scater): Update to 1.20.1.
2021-06-17 14:25:36 +02:00
Ricardo Wurmus
06fb533c28
gnu: r-rhdf5lib: Update to 1.14.1.
* gnu/packages/bioconductor.scm (r-rhdf5lib): Update to 1.14.1.
2021-06-17 14:25:36 +02:00
Ricardo Wurmus
e4c2155263
gnu: r-biocstyle: Update to 2.20.1.
* gnu/packages/bioconductor.scm (r-biocstyle): Update to 2.20.1.
2021-06-17 14:25:36 +02:00
Ricardo Wurmus
46178051d5
gnu: r-enrichplot: Update to 1.12.1.
* gnu/packages/bioconductor.scm (r-enrichplot): Update to 1.12.1.
2021-06-17 14:25:36 +02:00
Ricardo Wurmus
c5b7ade1c6
gnu: r-biocsingular: Update to 1.8.1.
* gnu/packages/bioconductor.scm (r-biocsingular): Update to 1.8.1.
2021-06-17 14:25:36 +02:00
Ricardo Wurmus
79b67d2f54
gnu: r-diffbind: Update to 3.2.2.
* gnu/packages/bioconductor.scm (r-diffbind): Update to 3.2.2.
2021-06-17 14:25:36 +02:00
Ricardo Wurmus
005d3d4058
gnu: r-biostrings: Update to 2.60.1.
* gnu/packages/bioconductor.scm (r-biostrings): Update to 2.60.1.
2021-06-17 14:25:36 +02:00
Ricardo Wurmus
495a9cff6d
gnu: r-biomart: Update to 2.48.1.
* gnu/packages/bioconductor.scm (r-biomart): Update to 2.48.1.
[propagated-inputs]: Add r-xml2.
2021-06-17 14:25:36 +02:00
Ricardo Wurmus
49e8978452
gnu: r-annotationdbi: Update to 1.54.1.
* gnu/packages/bioconductor.scm (r-annotationdbi): Update to 1.54.1.
2021-06-17 14:25:36 +02:00
Ricardo Wurmus
8f12002f6e
gnu: r-sushi: Update to 1.30.0.
* gnu/packages/bioconductor.scm (r-sushi): Update to 1.30.0.
2021-06-05 09:12:58 +02:00
Ricardo Wurmus
abe7628a05
gnu: r-guitar: Update to 2.8.0.
* gnu/packages/bioconductor.scm (r-guitar): Update to 2.8.0.
2021-06-05 09:12:58 +02:00
Ricardo Wurmus
3a5642d72e
gnu: r-chromstar: Update to 1.18.0.
* gnu/packages/bioconductor.scm (r-chromstar): Update to 1.18.0.
2021-06-05 09:12:58 +02:00
Ricardo Wurmus
3e2052e7da
gnu: r-snpstats: Update to 1.42.0.
* gnu/packages/bioconductor.scm (r-snpstats): Update to 1.42.0.
2021-06-05 09:12:58 +02:00
Ricardo Wurmus
8fa5a4d753
gnu: r-pathview: Update to 1.32.0.
* gnu/packages/bioconductor.scm (r-pathview): Update to 1.32.0.
2021-06-05 09:12:58 +02:00
Ricardo Wurmus
b4cea45e7c
gnu: r-ldblock: Update to 1.22.0.
* gnu/packages/bioconductor.scm (r-ldblock): Update to 1.22.0.
2021-06-05 09:12:58 +02:00
Ricardo Wurmus
2860208c42
gnu: r-kegggraph: Update to 1.52.0.
* gnu/packages/bioconductor.scm (r-kegggraph): Update to 1.52.0.
[propagated-inputs]: Add r-rgraphviz.
2021-06-05 09:12:58 +02:00
Ricardo Wurmus
a06d13be09
gnu: r-gwascat: Update to 2.24.0.
* gnu/packages/bioconductor.scm (r-gwascat): Update to 2.24.0.
[propagated-inputs]: Add r-annotationhub.
2021-06-05 09:12:58 +02:00
Ricardo Wurmus
bdfa1178b9
gnu: r-gviz: Update to 1.36.0.
* gnu/packages/bioconductor.scm (r-gviz): Update to 1.36.0.
2021-06-05 09:12:57 +02:00