Commit Graph

4291 Commits

Author SHA1 Message Date
Afkhami, Navid
21b44bbc7c
gnu: Add r-mafh5-gnomad-v3-1-2-grch38.
* gnu/packages/bioconductor.scm (r-mafh5-gnomad-v3-1-2-grch38): New variable.

Signed-off-by: Ricardo Wurmus <rekado@elephly.net>
2023-10-13 14:42:16 +02:00
Ricardo Wurmus
b4f2b681ad
gnu: Add r-chemmineob.
* gnu/packages/bioconductor.scm (r-chemmineob): New variable.
2023-10-11 15:44:06 +02:00
Ricardo Wurmus
591ffaede3
gnu: r-abn: Update to 3.0.1.
* gnu/packages/bioconductor.scm (r-abn): Update to 3.0.1.
2023-10-09 22:44:47 +02:00
Ricardo Wurmus
e97e708958
gnu: r-biomvrcns: Patch R constants.
* gnu/packages/bioconductor.scm (r-biomvrcns)[arguments]: Add phase
'patch-constants.
2023-10-06 08:55:11 +02:00
Ricardo Wurmus
c64777cfe0
gnu: r-activepathways: Update to 2.0.2.
* gnu/packages/bioconductor.scm (r-activepathways): Update to 2.0.2.
2023-10-05 15:16:26 +02:00
Ricardo Wurmus
f1259b80be
gnu: r-valr: Update to 0.7.0.
* gnu/packages/bioconductor.scm (r-valr): Update to 0.7.0.
[propagated-inputs]: Add r-lifecycle.
2023-10-05 15:16:26 +02:00
Ricardo Wurmus
8c22cc96f0
gnu: r-biomartr: Update to 1.0.5.
* gnu/packages/bioconductor.scm (r-biomartr): Update to 1.0.5.
2023-10-05 15:16:26 +02:00
Ricardo Wurmus
d841c23dc5
gnu: r-tximeta: Update to 1.18.3.
* gnu/packages/bioconductor.scm (r-tximeta): Update to 1.18.3.
2023-10-05 10:23:27 +02:00
Ricardo Wurmus
b53f7a87b2
gnu: r-biodb: Update to 1.8.1.
* gnu/packages/bioconductor.scm (r-biodb): Update to 1.8.1.
[propagated-inputs]: Add r-git2r.
2023-10-05 10:23:27 +02:00
Ricardo Wurmus
bf7c049147
gnu: r-gviz: Update to 1.44.2.
* gnu/packages/bioconductor.scm (r-gviz): Update to 1.44.2.
2023-10-05 10:23:27 +02:00
Ricardo Wurmus
9220702479
gnu: r-s4vectors: Update to 0.38.2.
* gnu/packages/bioconductor.scm (r-s4vectors): Update to 0.38.2.
2023-10-05 10:23:27 +02:00
Ricardo Wurmus
6492c6496b
gnu: r-biocstyle: Update to 2.28.1.
* gnu/packages/bioconductor.scm (r-biocstyle): Update to 2.28.1.
2023-10-05 10:23:27 +02:00
Ricardo Wurmus
27fd2d2c2a
gnu: r-yapsa: Update to 1.26.8.
* gnu/packages/bioconductor.scm (r-yapsa): Update to 1.26.8.
2023-10-05 10:23:27 +02:00
Ricardo Wurmus
6a1b46e7ab
gnu: r-enrichplot: Update to 1.20.3.
* gnu/packages/bioconductor.scm (r-enrichplot): Update to 1.20.3.
[propagated-inputs]: Add r-ggfun.
2023-10-05 10:23:27 +02:00
Ricardo Wurmus
3f3c986001
gnu: r-spectra: Update to 1.10.3.
* gnu/packages/bioconductor.scm (r-spectra): Update to 1.10.3.
2023-10-05 10:23:27 +02:00
Ricardo Wurmus
b82dc9b724
gnu: r-keggrest: Update to 1.40.1.
* gnu/packages/bioconductor.scm (r-keggrest): Update to 1.40.1.
2023-10-05 10:23:27 +02:00
Ricardo Wurmus
b56dabc7a3
gnu: r-genomeinfodb: Update to 1.36.4.
* gnu/packages/bioconductor.scm (r-genomeinfodb): Update to 1.36.4.
2023-10-05 10:23:27 +02:00
Ricardo Wurmus
28b2b7c367
gnu: r-ensembldb: Update to 2.24.1.
* gnu/packages/bioconductor.scm (r-ensembldb): Update to 2.24.1.
2023-10-05 10:23:27 +02:00
Ricardo Wurmus
fefad76048
gnu: r-ancombc: Update to 2.2.2.
* gnu/packages/bioconductor.scm (r-ancombc): Update to 2.2.2.
2023-10-05 10:23:27 +02:00
Ricardo Wurmus
caf9f847ef
gnu: r-omnipathr: Update to 3.8.2.
* gnu/packages/bioconductor.scm (r-omnipathr): Update to 3.8.2.
2023-10-05 10:23:27 +02:00
Mădălin Ionel Patrașcu
273ee56bc2
gnu: Add r-arrayquality.
* gnu/packages/bioconductor.scm (r-arrayquality): New variable.
2023-10-04 11:03:23 +02:00
Mădălin Ionel Patrașcu
4edacf416b
gnu: Add r-arraymvout.
* gnu/packages/bioconductor.scm (r-arraymvout): New variable.
2023-10-04 11:03:23 +02:00
Mădălin Ionel Patrașcu
4221c3d4da
gnu: Add r-parody.
* gnu/packages/bioconductor.scm (r-parody): New variable.
2023-10-04 11:03:23 +02:00
Mădălin Ionel Patrașcu
b84f6c2c0e
gnu: Add r-mdqc.
* gnu/packages/bioconductor.scm (r-mdqc): New variable.
2023-10-04 11:03:23 +02:00
Mădălin Ionel Patrașcu
9f08080b38
gnu: Add r-apcomplex.
* gnu/packages/bioconductor.scm (r-apcomplex): New variable.
2023-10-04 11:03:23 +02:00
Mădălin Ionel Patrașcu
e65ba1ccee
gnu: Add r-org-sc-sgd-db.
* gnu/packages/bioconductor.scm (r-org-sc-sgd-db): New variable.
2023-10-04 11:03:23 +02:00
Mădălin Ionel Patrașcu
1025316d80
gnu: Add r-hybridmtest.
* gnu/packages/bioconductor.scm (r-hybridmtest): New variable.
2023-10-04 11:03:23 +02:00
Mădălin Ionel Patrașcu
58a3333f58
gnu: Add r-anota2seq.
* gnu/packages/bioconductor.scm (r-anota2seq): New variable.
2023-10-04 11:03:23 +02:00
Ricardo Wurmus
cf5cb0875b
gnu: r-delayedmatrixstats: Update to 1.22.6.
* gnu/packages/bioconductor.scm (r-delayedmatrixstats): Update to 1.22.6.
2023-09-14 08:57:24 +02:00
Ricardo Wurmus
c8e7ea8a8b
gnu: r-rhdf5lib: Update to 1.22.1.
* gnu/packages/bioconductor.scm (r-rhdf5lib): Update to 1.22.1.
2023-09-14 08:57:24 +02:00
Ricardo Wurmus
ebaf944cdd
gnu: r-s4arrays: Update to 1.0.6.
* gnu/packages/bioconductor.scm (r-s4arrays): Update to 1.0.6.
2023-09-14 08:57:24 +02:00
Ricardo Wurmus
9232ef7986
gnu: r-clusterprofiler: Update to 4.8.3.
* gnu/packages/bioconductor.scm (r-clusterprofiler): Update to 4.8.3.
2023-09-14 08:57:24 +02:00
Ricardo Wurmus
8cfd6e804a
gnu: r-greylistchip: Update to 1.32.1.
* gnu/packages/bioconductor.scm (r-greylistchip): Update to 1.32.1.
2023-09-14 08:57:24 +02:00
Ricardo Wurmus
8fe9e14917
gnu: r-tcgautils: Update to 1.20.4.
* gnu/packages/bioconductor.scm (r-tcgautils): Update to 1.20.4.
[propagated-inputs]: Add r-biocbaseutils.
2023-09-14 08:57:24 +02:00
Ricardo Wurmus
7f983fb730
gnu: r-shinymethyl: Update to 1.36.1.
* gnu/packages/bioconductor.scm (r-shinymethyl): Update to 1.36.1.
2023-09-14 08:57:24 +02:00
Ricardo Wurmus
a1245f559d
gnu: r-genomicdatacommons: Update to 1.24.3.
* gnu/packages/bioconductor.scm (r-genomicdatacommons): Update to 1.24.3.
[propagated-inputs]: Add r-tidyr.
2023-09-14 08:57:24 +02:00
Ricardo Wurmus
6e06c0032c
gnu: r-genomeinfodb: Update to 1.36.3.
* gnu/packages/bioconductor.scm (r-genomeinfodb): Update to 1.36.3.
2023-09-14 08:57:24 +02:00
Ricardo Wurmus
bf9cd9521a
gnu: r-htscluster: Update to 2.0.11.
* gnu/packages/bioconductor.scm (r-htscluster): Update to 2.0.11.
2023-09-14 00:04:05 +02:00
Ricardo Wurmus
8f59ac151f
gnu: r-abn: Update to 3.0.0.
* gnu/packages/bioconductor.scm (r-abn): Update to 3.0.0.
[propagated-inputs]: Add r-mclogit and r-stringi.
2023-09-13 23:14:38 +02:00
Navid Afkhami
cda20190bc
gnu: Add r-interactivedisplay.
* gnu/packages/bioconductor.scm (r-interactivedisplay): New variable.

Co-authored-by: Ricardo Wurmus <rekado@elephly.net>
2023-09-13 12:10:06 +02:00
Navid Afkhami
8c0c94bf9f
gnu: Add r-trackviewer.
* gnu/packages/bioconductor.scm (r-trackviewer): New variable.

Co-authored-by: Ricardo Wurmus <rekado@elephly.net>
2023-09-02 11:55:23 +02:00
Ricardo Wurmus
3335903d7d
gnu: r-tximeta: Update to 1.18.1.
* gnu/packages/bioconductor.scm (r-tximeta): Update to 1.18.1.
2023-08-28 22:15:47 +02:00
Ricardo Wurmus
99ddc62840
gnu: r-dmrseq: Update to 1.20.1.
* gnu/packages/bioconductor.scm (r-dmrseq): Update to 1.20.1.
2023-08-28 22:15:47 +02:00
Ricardo Wurmus
7b93c6d88e
gnu: r-bionero: Update to 1.8.7.
* gnu/packages/bioconductor.scm (r-bionero): Update to 1.8.7.
2023-08-28 22:15:47 +02:00
Ricardo Wurmus
86f9555ef0
gnu: r-gviz: Update to 1.44.1.
* gnu/packages/bioconductor.scm (r-gviz): Update to 1.44.1.
2023-08-28 22:15:47 +02:00
Ricardo Wurmus
4ab9700e29
gnu: r-delayedmatrixstats: Update to 1.22.5.
* gnu/packages/bioconductor.scm (r-delayedmatrixstats): Update to 1.22.5.
2023-08-28 22:15:47 +02:00
Ricardo Wurmus
b200824114
gnu: r-scran: Update to 1.28.2.
* gnu/packages/bioconductor.scm (r-scran): Update to 1.28.2.
2023-08-28 22:15:47 +02:00
Ricardo Wurmus
6567ce830f
gnu: r-scuttle: Update to 1.10.2.
* gnu/packages/bioconductor.scm (r-scuttle): Update to 1.10.2.
2023-08-28 22:15:47 +02:00
Ricardo Wurmus
362f3cdb8e
gnu: r-s4arrays: Update to 1.0.5.
* gnu/packages/bioconductor.scm (r-s4arrays): Update to 1.0.5.
[propagated-inputs]: Add r-abind.
2023-08-28 22:15:47 +02:00
Ricardo Wurmus
790f0569f4
gnu: r-biocpkgtools: Update to 1.18.1.
* gnu/packages/bioconductor.scm (r-biocpkgtools): Update to 1.18.1.
2023-08-28 22:15:47 +02:00