Commit Graph

2848 Commits

Author SHA1 Message Date
Mădălin Ionel Patrașcu
4c294ae7fb
gnu: Add r-anaquin.
* gnu/packages/bioconductor.scm (r-anaquin): New variable.

Signed-off-by: Ricardo Wurmus <rekado@elephly.net>
2022-07-01 10:28:21 +02:00
Mădălin Ionel Patrașcu
c6d792f34c
gnu: Add r-amaretto.
* gnu/packages/bioconductor.scm (r-amaretto): New variable.
2022-06-30 15:35:27 +02:00
Mădălin Ionel Patrașcu
dd74da6190
gnu: Add r-amountain.
* gnu/packages/bioconductor.scm (r-amountain): New variable.
2022-06-30 15:29:45 +02:00
Ricardo Wurmus
6e333213d3
gnu: r-metap: Update to 1.8.
* gnu/packages/bioconductor.scm (r-metap): Update to 1.8.
[propagated-inputs]: Add r-mathjaxr and r-qqconf.
2022-06-30 15:17:58 +02:00
Ricardo Wurmus
fce6aeba7e
gnu: r-nbpseq: Update to 0.3.1.
* gnu/packages/bioconductor.scm (r-nbpseq): Update to 0.3.1.
2022-06-13 14:21:46 +02:00
Ricardo Wurmus
37378829bc
gnu: r-restfulr: Update to 0.0.14.
* gnu/packages/bioconductor.scm (r-restfulr): Update to 0.0.14.
2022-06-13 14:21:42 +02:00
Ricardo Wurmus
0006a9a83a
gnu: Add r-deconvr.
* gnu/packages/bioconductor.scm (r-deconvr): New variable.
2022-06-12 22:51:23 +02:00
Ricardo Wurmus
541823b318
gnu: r-hdf5array: Update to 1.24.1.
* gnu/packages/bioconductor.scm (r-hdf5array): Update to 1.24.1.
2022-06-12 11:16:30 +02:00
Ricardo Wurmus
a12ec47cbd
gnu: r-universalmotif: Update to 1.14.1.
* gnu/packages/bioconductor.scm (r-universalmotif): Update to 1.14.1.
2022-06-12 11:16:30 +02:00
Ricardo Wurmus
a76b657d93
gnu: r-rsubread: Update to 2.10.2.
* gnu/packages/bioconductor.scm (r-rsubread): Update to 2.10.2.
2022-06-12 11:16:30 +02:00
Ricardo Wurmus
41435e0e1c
gnu: r-clusterprofiler: Update to 4.4.2.
* gnu/packages/bioconductor.scm (r-clusterprofiler): Update to 4.4.2.
2022-06-12 11:16:29 +02:00
Ricardo Wurmus
640b45d73c
gnu: r-monocle: Update to 2.24.1.
* gnu/packages/bioconductor.scm (r-monocle): Update to 2.24.1.
2022-06-12 11:16:29 +02:00
Ricardo Wurmus
8ed8c8b8da
gnu: r-chippeakanno: Update to 3.30.1.
* gnu/packages/bioconductor.scm (r-chippeakanno): Update to 3.30.1.
2022-06-12 11:16:29 +02:00
Ricardo Wurmus
46aab4d33d
gnu: r-zellkonverter: Update to 1.6.2.
* gnu/packages/bioconductor.scm (r-zellkonverter): Update to 1.6.2.
2022-06-12 11:16:28 +02:00
Ricardo Wurmus
7a344aa9e2
gnu: r-keggrest: Update to 1.36.2.
* gnu/packages/bioconductor.scm (r-keggrest): Update to 1.36.2.
2022-06-12 11:16:28 +02:00
Ricardo Wurmus
1ecac84c73
gnu: r-genomicfeatures: Update to 1.48.3.
* gnu/packages/bioconductor.scm (r-genomicfeatures): Update to 1.48.3.
2022-06-12 11:16:28 +02:00
Ricardo Wurmus
15e26f97d9
gnu: r-biocparallel: Update to 1.30.3.
* gnu/packages/bioconductor.scm (r-biocparallel): Update to 1.30.3.
[propagated-inputs]: Add r-codetools.
2022-06-12 11:16:28 +02:00
Ricardo Wurmus
f5899fe58b
gnu: r-deepsnv: Update to 1.42.1.
* gnu/packages/bioconductor.scm (r-deepsnv): Update to 1.42.1.
2022-06-12 11:16:23 +02:00
Ricardo Wurmus
bfcae1efbb
gnu: r-batchelor: Update to 1.12.1.
* gnu/packages/bioconductor.scm (r-batchelor): Update to 1.12.1.
2022-05-30 15:16:35 +02:00
Ricardo Wurmus
e640da33f3
Merge branch 'wip-r' 2022-05-29 11:49:03 +02:00
Ricardo Wurmus
89e9262012
gnu: r-bsgenome-hsapiens-ucsc-hg19-masked: Update to 1.3.993.
* gnu/packages/bioconductor.scm (r-bsgenome-hsapiens-ucsc-hg19-masked): Update to 1.3.993.
2022-05-29 11:44:09 +02:00
Mădălin Ionel Patrașcu
a5f4c03df1
gnu: Add r-scmap.
* gnu/packages/bioconductor.scm (r-scmap): New variable.

Signed-off-by: Ricardo Wurmus <rekado@elephly.net>
2022-05-29 00:43:05 +02:00
Ricardo Wurmus
66bfe55848
gnu: Add r-msdata.
* gnu/packages/bioconductor.scm (r-msdata): New variable.
2022-05-28 23:19:48 +02:00
Ricardo Wurmus
79158a5624
gnu: r-tcgabiolinksgui-data: Update to 1.16.0.
* gnu/packages/bioconductor.scm (r-tcgabiolinksgui-data): Update to 1.16.0.
2022-05-28 23:19:48 +02:00
Ricardo Wurmus
9d538de266
gnu: r-curatedtcgadata: Update to 1.18.0.
* gnu/packages/bioconductor.scm (r-curatedtcgadata): Update to 1.18.0.
[native-inputs]: Add r-knitr.
2022-05-28 23:19:47 +02:00
Ricardo Wurmus
1c4d0fc9a9
gnu: r-gagedata: Update to 2.34.0.
* gnu/packages/bioconductor.scm (r-gagedata): Update to 2.34.0.
2022-05-28 23:19:47 +02:00
Ricardo Wurmus
c56b553e97
gnu: r-affydata: Update to 1.44.0.
* gnu/packages/bioconductor.scm (r-affydata): Update to 1.44.0.
2022-05-28 23:19:47 +02:00
Ricardo Wurmus
e06ee7a745
gnu: r-all: Update to 1.38.0.
* gnu/packages/bioconductor.scm (r-all): Update to 1.38.0.
2022-05-28 23:19:47 +02:00
Ricardo Wurmus
15e10974ef
gnu: r-hsmmsinglecell: Update to 1.16.0.
* gnu/packages/bioconductor.scm (r-hsmmsinglecell): Update to 1.16.0.
2022-05-28 23:19:47 +02:00
Ricardo Wurmus
3ff4e48e85
gnu: r-pasilla: Update to 1.24.0.
* gnu/packages/bioconductor.scm (r-pasilla): Update to 1.24.0.
[propagated-inputs]: Remove r-biocstyle, r-knitr, and r-rmarkdown.
[native-inputs]: Add r-knitr.
2022-05-28 23:19:47 +02:00
Ricardo Wurmus
4f2ac5f19f
gnu: r-genomationdata: Update to 1.28.0.
* gnu/packages/bioconductor.scm (r-genomationdata): Update to 1.28.0.
2022-05-28 23:19:47 +02:00
Ricardo Wurmus
d24b0702b6
gnu: r-genelendatabase: Update to 1.32.0.
* gnu/packages/bioconductor.scm (r-genelendatabase): Update to 1.32.0.
2022-05-28 23:19:47 +02:00
Ricardo Wurmus
7a58c9af46
gnu: r-copyhelper: Update to 1.28.0.
* gnu/packages/bioconductor.scm (r-copyhelper): Update to 1.28.0.
2022-05-28 23:19:47 +02:00
Ricardo Wurmus
e437cf10a4
gnu: r-chromstardata: Update to 1.22.0.
* gnu/packages/bioconductor.scm (r-chromstardata): Update to 1.22.0.
2022-05-28 23:19:47 +02:00
Ricardo Wurmus
1413f9f214
gnu: r-celldex: Update to 1.6.0.
* gnu/packages/bioconductor.scm (r-celldex): Update to 1.6.0.
2022-05-28 23:19:46 +02:00
Ricardo Wurmus
3ce819d563
gnu: r-biscuiteerdata: Update to 1.10.0.
* gnu/packages/bioconductor.scm (r-biscuiteerdata): Update to 1.10.0.
2022-05-28 23:19:46 +02:00
Ricardo Wurmus
ccb66a16a0
gnu: r-arrmdata: Update to 1.32.0.
* gnu/packages/bioconductor.scm (r-arrmdata): Update to 1.32.0.
2022-05-28 23:19:46 +02:00
Ricardo Wurmus
9db43e4979
gnu: r-aneufinderdata: Update to 1.24.0.
* gnu/packages/bioconductor.scm (r-aneufinderdata): Update to 1.24.0.
2022-05-28 23:19:46 +02:00
Ricardo Wurmus
c89eb68ede
gnu: r-adductdata: Update to 1.12.0.
* gnu/packages/bioconductor.scm (r-adductdata): Update to 1.12.0.
2022-05-28 23:19:46 +02:00
Ricardo Wurmus
7feae8098c
gnu: r-pfam-db: Update to 3.15.0.
* gnu/packages/bioconductor.scm (r-pfam-db): Update to 3.15.0.
2022-05-28 23:19:46 +02:00
Ricardo Wurmus
5efae7b049
gnu: r-txdb-hsapiens-ucsc-hg38-knowngene: Update to 3.15.0.
* gnu/packages/bioconductor.scm (r-txdb-hsapiens-ucsc-hg38-knowngene): Update to 3.15.0.
[propagated-inputs]: Add r-annotationdbi.
2022-05-28 23:19:46 +02:00
Ricardo Wurmus
8ee1246a38
gnu: r-bsgenome-hsapiens-ucsc-hg38: Update to 1.4.4.
* gnu/packages/bioconductor.scm (r-bsgenome-hsapiens-ucsc-hg38): Update to 1.4.4.
2022-05-28 23:19:46 +02:00
Ricardo Wurmus
3d93251ea5
gnu: r-bsgenome-hsapiens-ucsc-hg19: Update to 1.4.3.
* gnu/packages/bioconductor.scm (r-bsgenome-hsapiens-ucsc-hg19): Update to 1.4.3.
2022-05-28 23:19:46 +02:00
Ricardo Wurmus
549a9e6f6a
gnu: r-leidenbase: Update to 0.1.9.
* gnu/packages/bioconductor.scm (r-leidenbase): Update to 0.1.9.
2022-05-28 23:19:46 +02:00
Ricardo Wurmus
319fa58dac
gnu: r-phyloseq: Update to 1.40.0.
* gnu/packages/bioconductor.scm (r-phyloseq): Update to 1.40.0.
2022-05-28 23:19:45 +02:00
Ricardo Wurmus
e0be852a1e
gnu: r-tximeta: Update to 1.14.0.
* gnu/packages/bioconductor.scm (r-tximeta): Update to 1.14.0.
2022-05-28 23:19:45 +02:00
Ricardo Wurmus
e290d834d9
gnu: r-tricycle: Update to 1.4.0.
* gnu/packages/bioconductor.scm (r-tricycle): Update to 1.4.0.
[propagated-inputs]: Add r-ggnewscale.
2022-05-28 23:19:45 +02:00
Ricardo Wurmus
5ec7143f69
gnu: r-tcgabiolinks: Update to 2.24.1.
* gnu/packages/bioconductor.scm (r-tcgabiolinks): Update to 2.24.1.
2022-05-28 23:19:45 +02:00
Ricardo Wurmus
a4f03b0a55
gnu: r-biscuiteer: Update to 1.10.0.
* gnu/packages/bioconductor.scm (r-biscuiteer): Update to 1.10.0.
[propagated-inputs]: Add r-iranges.
2022-05-28 23:19:45 +02:00
Ricardo Wurmus
6f31f4618a
gnu: r-omnipathr: Update to 3.4.0.
* gnu/packages/bioconductor.scm (r-omnipathr): Update to 3.4.0.
[propagated-inputs]: Add r-withr.
2022-05-28 23:19:45 +02:00
Ricardo Wurmus
b1c215755a
gnu: r-dmrseq: Update to 1.16.0.
* gnu/packages/bioconductor.scm (r-dmrseq): Update to 1.16.0.
2022-05-28 23:19:45 +02:00
Ricardo Wurmus
4ab8327ba4
gnu: r-bsseq: Update to 1.32.0.
* gnu/packages/bioconductor.scm (r-bsseq): Update to 1.32.0.
2022-05-28 23:19:45 +02:00
Ricardo Wurmus
397bdc4329
gnu: r-biotmle: Update to 1.20.0.
* gnu/packages/bioconductor.scm (r-biotmle): Update to 1.20.0.
2022-05-28 23:19:45 +02:00
Ricardo Wurmus
4b3f9a16f2
gnu: r-biotip: Update to 1.10.0.
* gnu/packages/bioconductor.scm (r-biotip): Update to 1.10.0.
[propagated-inputs]: Remove r-hmisc; add r-scran.
2022-05-28 23:19:45 +02:00
Ricardo Wurmus
e8e3d333f0
gnu: r-bioqc: Update to 1.24.0.
* gnu/packages/bioconductor.scm (r-bioqc): Update to 1.24.0.
2022-05-28 23:19:44 +02:00
Ricardo Wurmus
dba6a33e3d
gnu: r-bionetstat: Update to 1.16.0.
* gnu/packages/bioconductor.scm (r-bionetstat): Update to 1.16.0.
2022-05-28 23:19:44 +02:00
Ricardo Wurmus
8fe9bcf0a4
gnu: r-bionet: Update to 1.56.0.
* gnu/packages/bioconductor.scm (r-bionet): Update to 1.56.0.
2022-05-28 23:19:44 +02:00
Ricardo Wurmus
f5262fa4ed
gnu: r-bionero: Update to 1.4.0.
* gnu/packages/bioconductor.scm (r-bionero): Update to 1.4.0.
2022-05-28 23:19:44 +02:00
Ricardo Wurmus
3391ff6ddb
gnu: r-biomvrcns: Update to 1.36.0.
* gnu/packages/bioconductor.scm (r-biomvrcns): Update to 1.36.0.
2022-05-28 23:19:44 +02:00
Ricardo Wurmus
7fe83026b7
gnu: r-biomvcclass: Update to 1.64.0.
* gnu/packages/bioconductor.scm (r-biomvcclass): Update to 1.64.0.
2022-05-28 23:19:44 +02:00
Ricardo Wurmus
a3a8109fe8
gnu: r-mvcclass: Update to 1.70.0.
* gnu/packages/bioconductor.scm (r-mvcclass): Update to 1.70.0.
2022-05-28 23:19:44 +02:00
Ricardo Wurmus
eb18527e5f
gnu: r-biomformat: Update to 1.24.0.
* gnu/packages/bioconductor.scm (r-biomformat): Update to 1.24.0.
2022-05-28 23:19:44 +02:00
Ricardo Wurmus
12ee563b41
gnu: r-biodb: Update to 1.4.0.
* gnu/packages/bioconductor.scm (r-biodb): Update to 1.4.0.
2022-05-28 23:19:44 +02:00
Ricardo Wurmus
259c003f02
gnu: r-biocdockermanager: Update to 1.8.0.
* gnu/packages/bioconductor.scm (r-biocdockermanager): Update to 1.8.0.
2022-05-28 23:19:43 +02:00
Ricardo Wurmus
6766fbb003
gnu: r-biocthis: Update to 1.6.0.
* gnu/packages/bioconductor.scm (r-biocthis): Update to 1.6.0.
2022-05-28 23:19:43 +02:00
Ricardo Wurmus
b007802e4b
gnu: r-basilisk: Update to 1.8.0.
* gnu/packages/bioconductor.scm (r-basilisk): Update to 1.8.0.
2022-05-28 23:19:43 +02:00
Ricardo Wurmus
90e56ba6e3
gnu: r-basilisk-utils: Update to 1.8.0.
* gnu/packages/bioconductor.scm (r-basilisk-utils): Update to 1.8.0.
2022-05-28 23:19:43 +02:00
Ricardo Wurmus
5d2c07021c
gnu: r-dir-expiry: Update to 1.4.0.
* gnu/packages/bioconductor.scm (r-dir-expiry): Update to 1.4.0.
2022-05-28 23:19:43 +02:00
Ricardo Wurmus
3c65a7d577
gnu: r-genetclassifier: Update to 1.36.0.
* gnu/packages/bioconductor.scm (r-genetclassifier): Update to 1.36.0.
2022-05-28 23:19:43 +02:00
Ricardo Wurmus
c4f8b5759a
gnu: r-minet: Update to 3.54.0.
* gnu/packages/bioconductor.scm (r-minet): Update to 3.54.0.
2022-05-28 23:19:43 +02:00
Ricardo Wurmus
395f152b92
gnu: r-biobtreer: Update to 1.8.0.
* gnu/packages/bioconductor.scm (r-biobtreer): Update to 1.8.0.
2022-05-28 23:19:43 +02:00
Ricardo Wurmus
24c13f9d64
gnu: r-bgeedb: Update to 2.22.0.
* gnu/packages/bioconductor.scm (r-bgeedb): Update to 2.22.0.
2022-05-28 23:19:43 +02:00
Ricardo Wurmus
00025cdd23
gnu: r-bgeecall: Update to 1.12.1.
* gnu/packages/bioconductor.scm (r-bgeecall): Update to 1.12.1.
2022-05-28 23:19:43 +02:00
Ricardo Wurmus
460680ef90
gnu: r-beclear: Update to 2.12.0.
* gnu/packages/bioconductor.scm (r-beclear): Update to 2.12.0.
[propagated-inputs]: Remove r-outliers; add r-dixontest.
2022-05-28 23:19:42 +02:00
Ricardo Wurmus
64c3498d9f
gnu: r-megadepth: Update to 1.6.0.
* gnu/packages/bioconductor.scm (r-megadepth): Update to 1.6.0.
2022-05-28 23:19:42 +02:00
Ricardo Wurmus
c2a8c4c248
gnu: r-ballgown: Update to 2.28.0.
* gnu/packages/bioconductor.scm (r-ballgown): Update to 2.28.0.
2022-05-28 23:19:42 +02:00
Ricardo Wurmus
d57d65a628
gnu: r-sushi: Update to 1.34.0.
* gnu/packages/bioconductor.scm (r-sushi): Update to 1.34.0.
2022-05-28 23:19:42 +02:00
Ricardo Wurmus
8467426bba
gnu: r-guitar: Update to 2.12.0.
* gnu/packages/bioconductor.scm (r-guitar): Update to 2.12.0.
2022-05-28 23:19:42 +02:00
Ricardo Wurmus
80f63620c5
gnu: r-chromstar: Update to 1.22.0.
* gnu/packages/bioconductor.scm (r-chromstar): Update to 1.22.0.
2022-05-28 23:19:42 +02:00
Ricardo Wurmus
93b59aca4c
gnu: r-snpstats: Update to 1.46.0.
* gnu/packages/bioconductor.scm (r-snpstats): Update to 1.46.0.
2022-05-28 23:19:42 +02:00
Ricardo Wurmus
c784304f9b
gnu: r-pathview: Update to 1.36.0.
* gnu/packages/bioconductor.scm (r-pathview): Update to 1.36.0.
2022-05-28 23:19:42 +02:00
Ricardo Wurmus
c8f930d575
gnu: r-ldblock: Update to 1.26.0.
* gnu/packages/bioconductor.scm (r-ldblock): Update to 1.26.0.
2022-05-28 23:19:42 +02:00
Ricardo Wurmus
564024c01f
gnu: r-kegggraph: Update to 1.56.0.
* gnu/packages/bioconductor.scm (r-kegggraph): Update to 1.56.0.
2022-05-28 23:19:41 +02:00
Ricardo Wurmus
ee71b376ec
gnu: r-gwascat: Update to 2.28.1.
* gnu/packages/bioconductor.scm (r-gwascat): Update to 2.28.1.
2022-05-28 23:19:41 +02:00
Ricardo Wurmus
b6f77fdc87
gnu: r-gviz: Update to 1.40.1.
* gnu/packages/bioconductor.scm (r-gviz): Update to 1.40.1.
2022-05-28 23:19:41 +02:00
Ricardo Wurmus
97ea85bfcf
gnu: r-ggbio: Update to 1.44.0.
* gnu/packages/bioconductor.scm (r-ggbio): Update to 1.44.0.
2022-05-28 23:19:41 +02:00
Ricardo Wurmus
534743333e
gnu: r-erma: Update to 1.12.0.
* gnu/packages/bioconductor.scm (r-erma): Update to 1.12.0.
2022-05-28 23:19:41 +02:00
Ricardo Wurmus
1b75b53a0e
gnu: r-catalyst: Update to 1.20.1.
* gnu/packages/bioconductor.scm (r-catalyst): Update to 1.20.1.
2022-05-28 23:19:41 +02:00
Ricardo Wurmus
e4a8e6dab4
gnu: r-msmstests: Update to 1.34.0.
* gnu/packages/bioconductor.scm (r-msmstests): Update to 1.34.0.
2022-05-28 23:19:41 +02:00
Ricardo Wurmus
d99da8bb1c
gnu: r-msmseda: Update to 1.34.0.
* gnu/packages/bioconductor.scm (r-msmseda): Update to 1.34.0.
2022-05-28 23:19:40 +02:00
Ricardo Wurmus
f185bf805c
gnu: r-biocio: Update to 1.6.0.
* gnu/packages/bioconductor.scm (r-biocio): Update to 1.6.0.
2022-05-28 23:19:40 +02:00
Ricardo Wurmus
d34a40c4c0
gnu: r-msfeatures: Update to 1.4.0.
* gnu/packages/bioconductor.scm (r-msfeatures): Update to 1.4.0.
2022-05-28 23:19:40 +02:00
Ricardo Wurmus
ec7849c360
gnu: r-mscoreutils: Update to 1.8.0.
* gnu/packages/bioconductor.scm (r-mscoreutils): Update to 1.8.0.
2022-05-28 23:19:40 +02:00
Ricardo Wurmus
9381702bbc
gnu: r-delayedmatrixstats: Update to 1.18.0.
* gnu/packages/bioconductor.scm (r-delayedmatrixstats): Update to 1.18.0.
2022-05-28 23:19:40 +02:00
Ricardo Wurmus
eca29a788b
gnu: r-sparsematrixstats: Update to 1.8.0.
* gnu/packages/bioconductor.scm (r-sparsematrixstats): Update to 1.8.0.
2022-05-28 23:19:40 +02:00
Ricardo Wurmus
5f04cf7bdb
gnu: r-scran: Update to 1.24.0.
* gnu/packages/bioconductor.scm (r-scran): Update to 1.24.0.
2022-05-28 23:19:40 +02:00
Ricardo Wurmus
9631f2190a
gnu: r-scater: Update to 1.24.0.
* gnu/packages/bioconductor.scm (r-scater): Update to 1.24.0.
[propagated-inputs]: Add r-rcppml.
2022-05-28 23:19:40 +02:00
Ricardo Wurmus
a8fbcbdb7a
gnu: r-scuttle: Update to 1.6.2.
* gnu/packages/bioconductor.scm (r-scuttle): Update to 1.6.2.
2022-05-28 23:19:40 +02:00
Ricardo Wurmus
816a1ba4dc
gnu: r-singler: Update to 1.10.0.
* gnu/packages/bioconductor.scm (r-singler): Update to 1.10.0.
2022-05-28 23:19:40 +02:00
Ricardo Wurmus
decd8480f6
gnu: r-singlecellexperiment: Update to 1.18.0.
* gnu/packages/bioconductor.scm (r-singlecellexperiment): Update to 1.18.0.
2022-05-28 23:19:39 +02:00