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4946 Commits

Author SHA1 Message Date
Ricardo Wurmus
e775f704c8
gnu: Add r-bodymaprat. 
* gnu/packages/bioconductor.scm (r-bodymaprat): New variable.

Change-Id: I6843b957d5722f4c5460796ba41effee5717ae45
 2024-01-21 23:54:23 +01:00
Ricardo Wurmus
1d00a9edff
gnu: Add r-protgear. 
* gnu/packages/bioconductor.scm (r-protgear): New variable.

Change-Id: Ic6d5cae65d4f76df4488ee2462071ba68b50c184
 2024-01-21 11:08:13 +01:00
Ricardo Wurmus
0facea431a
gnu: Add r-netgsa. 
* gnu/packages/bioconductor.scm (r-netgsa): New variable.

Change-Id: I79b842854db80bbacdb8ff4c9fccfabdfc04d779
 2024-01-21 08:33:56 +01:00
Ricardo Wurmus
6648e34342
gnu: Add r-rcy3. 
* gnu/packages/bioconductor.scm (r-rcy3): New variable.

Change-Id: Ia295e8a174f65c8378ae83bdc1dde2877a48ff45
 2024-01-21 08:30:40 +01:00
Ricardo Wurmus
8ca35ca44f
gnu: r-cytolib: Update to 2.14.1. 
* gnu/packages/bioconductor.scm (r-cytolib): Update to 2.14.1.
[source]: Do not unbundle included boost.
[arguments]: Remove.
[inputs]: Remove boost.

Change-Id: Ibe26b9df3f73e67fb9f53676a2c27a5aed714895
 2024-01-21 00:17:45 +01:00
Ricardo Wurmus
9072f27f5d
gnu: r-org-hs-eg-db: Update to 3.18.0. 
* gnu/packages/bioconductor.scm (r-org-hs-eg-db): Update to 3.18.0.

Change-Id: Iaba83a413858a95e81b6488a2f8cde648f0bdeed
 2024-01-20 19:52:40 +01:00
Ricardo Wurmus
d441454ba8
gnu: Add r-methylclockdata. 
* gnu/packages/bioconductor.scm (r-methylclockdata): New variable.

Change-Id: Id76373a9aec8276dcfd1ec3428d2ce9c81cc51d2
 2024-01-20 19:52:24 +01:00
Ricardo Wurmus
2b3a21c55f
gnu: Add r-experimenthubdata. 
* gnu/packages/bioconductor.scm (r-experimenthubdata): New variable.

Change-Id: I5faf26f483898b162bc1f863a4aceb6f46c52c18
 2024-01-20 19:52:05 +01:00
Ricardo Wurmus
c4838027b4
gnu: Add r-jaspar2016. 
* gnu/packages/bioconductor.scm (r-jaspar2016): New variable.

Change-Id: Ib2970791207b426c39bd0226e01107a35fec0bb2
 2024-01-20 19:50:13 +01:00
Ricardo Wurmus
6f93502ced
gnu: Add r-genomicstate. 
* gnu/packages/bioconductor.scm (r-genomicstate): New variable.

Change-Id: I1b86c8e849af7b69b5fa9ea2a0e43b4e3e1850b2
 2024-01-20 19:45:26 +01:00
Ricardo Wurmus
c410d4e268
gnu: Add r-ensdb-hsapiens-v79. 
* gnu/packages/bioconductor.scm (r-ensdb-hsapiens-v79): New variable.

Change-Id: I773615df66194ddb195f013f7000d175ac07d095
 2024-01-20 19:45:26 +01:00
Ricardo Wurmus
eb1d80ac77
gnu: Add r-trnadbimport. 
* gnu/packages/bioconductor.scm (r-trnadbimport): New variable.

Change-Id: I5a232b50c08ef999f691566ccf5c0fbaf0eb21ea
 2024-01-19 23:55:43 +01:00
Ricardo Wurmus
74ce9d7e3b
gnu: Add r-trna. 
* gnu/packages/bioconductor.scm (r-trna): New variable.

Change-Id: Ifce902910fa75ddc471d8a25cc974307c19fd1d0
 2024-01-19 23:55:43 +01:00
Ricardo Wurmus
1d56a24509
gnu: Add r-modstrings. 
* gnu/packages/bioconductor.scm (r-modstrings): New variable.

Change-Id: Ia61816213a7d128ab50a9ae2b2c8879e6ac00499
 2024-01-19 23:55:43 +01:00
Ricardo Wurmus
5c10649a50
gnu: Add r-structstrings. 
* gnu/packages/bioconductor.scm (r-structstrings): New variable.

Change-Id: I9759520a03ee8178432591c48bf56fb25a379f27
 2024-01-19 23:55:43 +01:00
Ricardo Wurmus
d8c718d44c
gnu: Add r-flames. 
* gnu/packages/bioconductor.scm (r-flames): New variable.

Change-Id: I551a8f9d7de16e2281898b9541572dd244aadc36
 2024-01-19 23:55:43 +01:00
Ricardo Wurmus
fdc6c6e29f
gnu: Add r-sictools. 
* gnu/packages/bioconductor.scm (r-sictools): New variable.

Change-Id: I6d6f821f054ff7fad190eb495eef7c73608d46d7
 2024-01-18 23:10:39 +01:00
Ricardo Wurmus
f1aaaf2ac1
gnu: r-tximeta: Update to 1.20.2. 
* gnu/packages/bioconductor.scm (r-tximeta): Update to 1.20.2.

Change-Id: I166ca1f24ecef8067f36a35a140dff345fdab7a0
 2024-01-18 16:01:55 +01:00
Ricardo Wurmus
b19e208c17
gnu: r-basilisk: Update to 1.14.2. 
* gnu/packages/bioconductor.scm (r-basilisk): Update to 1.14.2.

Change-Id: I9524ac5f52107c38b3c1172f3083836c7eabac99
 2024-01-18 16:01:55 +01:00
Ricardo Wurmus
cde5a13151
gnu: r-scran: Update to 1.30.1. 
* gnu/packages/bioconductor.scm (r-scran): Update to 1.30.1.

Change-Id: I4a2784c87fdaa09a370c4d46101dbb569bcc39ab
 2024-01-18 16:01:54 +01:00
Ricardo Wurmus
eee867139c
gnu: r-xcms: Update to 4.0.2. 
* gnu/packages/bioconductor.scm (r-xcms): Update to 4.0.2.

Change-Id: I1fe358bb287acb2810b83c383b0cd1b28e8c97b5
 2024-01-18 16:01:54 +01:00
Ricardo Wurmus
a162ff0fa4
gnu: r-genomicalignments: Update to 1.38.2. 
* gnu/packages/bioconductor.scm (r-genomicalignments): Update to 1.38.2.

Change-Id: Ia521daa60db1fab67d77be2fddf356e6e4950efd
 2024-01-18 16:01:54 +01:00
Ricardo Wurmus
5ad5cb8c6e
gnu: r-edger: Update to 4.0.9. 
* gnu/packages/bioconductor.scm (r-edger): Update to 4.0.9.

Change-Id: I253e9e2a5675b13e7947601a8726bea8aad63792
 2024-01-18 16:01:54 +01:00
Ricardo Wurmus
c64c5a33b2
gnu: r-dss: Update to 2.50.1. 
* gnu/packages/bioconductor.scm (r-dss): Update to 2.50.1.

Change-Id: Ief667e0b83ae2220900d021ebe93d27c4747c91d
 2024-01-18 16:01:54 +01:00
Ricardo Wurmus
e3efa67a2e
gnu: r-densvis: Update to 1.12.1. 
* gnu/packages/bioconductor.scm (r-densvis): Update to 1.12.1.

Change-Id: I52383b9b530fdf0fe262752d639c9f2834e70fd0
 2024-01-18 16:01:54 +01:00
Ricardo Wurmus
85cc64bfb8
gnu: r-animalcules: Update to 1.18.2. 
* gnu/packages/bioconductor.scm (r-animalcules): Update to 1.18.2.
[propagated-inputs]: Remove r-biomformat, r-glmnet, and r-plotroc; add r-rocit.

Change-Id: Idd769a9608154b66871a38701a49e84f008f849c
 2024-01-18 16:01:54 +01:00
Ricardo Wurmus
59706daf02
gnu: r-cytolib: Unbundle boost. 
* gnu/packages/bioconductor.scm (r-cytolib)[source]: Remove bundled copy of
boost.
[arguments]: Change build system to link with existing boost library.
[inputs]: Add boost, openblas, protobuf, and zlib.

Change-Id: I3d1b7d10c80ddaf8ed8eedfe9178ab212ef48e8d
 2024-01-11 17:10:24 +01:00
Ricardo Wurmus
002102983f
gnu: r-singler: Update to 2.4.1. 
* gnu/packages/bioconductor.scm (r-singler): Update to 2.4.1.

Change-Id: I9b914f8194cf3317a3102c03a2cb1970f0583d9e
 2024-01-11 14:41:31 +01:00
Ricardo Wurmus
c04ec0ed02
gnu: r-biocneighbors: Update to 1.20.2. 
* gnu/packages/bioconductor.scm (r-biocneighbors): Update to 1.20.2.

Change-Id: I1b2ee238581afe644ea3916b0bdcc360dae63f9f
 2024-01-11 14:41:31 +01:00
Ricardo Wurmus
6972aba5ea
gnu: r-inspect: Update to 1.32.1. 
* gnu/packages/bioconductor.scm (r-inspect): Update to 1.32.1.
[propagated-inputs]: Remove r-gdata; add r-readxl.

Change-Id: I80ebb3d77076cd5b0cb04d83140098251d608afd
 2024-01-11 14:41:31 +01:00
Ricardo Wurmus
4ca94066f1
gnu: r-genomicalignments: Update to 1.38.1. 
* gnu/packages/bioconductor.scm (r-genomicalignments): Update to 1.38.1.

Change-Id: I5309ec8dd3b464ba54bc94a7d0a5115cc38ecf40
 2024-01-11 14:41:31 +01:00
Ricardo Wurmus
6e21d78b32
gnu: r-edger: Update to 4.0.6. 
* gnu/packages/bioconductor.scm (r-edger): Update to 4.0.6.

Change-Id: Ic2163a951bdfcaf7c54144008ae698b32d5e59a2
 2024-01-11 14:41:31 +01:00
nafkhamdc
c1fda6cf61
gnu: Add r-jaspar2020. 
* gnu/packages/bioconductor.scm (r-jaspar2020): New variable.

Change-Id: I84f0fc2a7defc5d179ffc24aa1f30177cb3b3060
 2024-01-10 18:39:13 +01:00
nafkhamdc
feab3943c1
gnu: Add r-dsb. 
* gnu/packages/bioconductor.scm (r-dsb): New variable.

Change-Id: I34b91da1ae177bd37cfa548c5f6fede453f29bcd
 2024-01-10 18:39:13 +01:00
nafkhamdc
2ec29a8c11
gnu: Add r-escape. 
* gnu/packages/bioconductor.scm (r-escape): New variable.

Change-Id: Ia308f9c90fa81c3304f97daa4f56ae4cd722d5cc
 2024-01-10 18:39:13 +01:00
Ricardo Wurmus
5cec983e04
gnu: r-edger: Update to 4.0.5. 
* gnu/packages/bioconductor.scm (r-edger): Update to 4.0.5.

Change-Id: Ibf41684a81da1a842f1a8e41309113fb50db6ef9
 2024-01-05 17:17:33 +01:00
Ricardo Wurmus
d2a6480e8e
gnu: Add r-scrnaseq. 
* gnu/packages/bioconductor.scm (r-scrnaseq): New variable.

Change-Id: Iee25b59af0000f4d2fd7482183b43404840a336c
 2024-01-05 08:57:53 +01:00
Ricardo Wurmus
e8814809c2
gnu: Add r-toast. 
* gnu/packages/bioconductor.scm (r-toast): New variable.

Change-Id: I922508bce0bdf0304e2f40d93a63ffdb58d03aa6
 2024-01-02 19:23:51 +01:00
Ricardo Wurmus
5b030de386
gnu: Add r-epidish. 
* gnu/packages/bioconductor.scm (r-epidish): New variable.

Change-Id: Ib8ca5980149a5d3eabb3d4a68ae686b855e372d4
 2024-01-02 19:22:13 +01:00
Mădălin Ionel Patrașcu
7593364d70
gnu: Add r-scgate. 
* gnu/packages/bioconductor.scm (r-scgate): New variable.

Change-Id: I441bbea5a68882f5f619dea72abdf84619c9d02f
 2024-01-02 10:19:29 +01:00
Ricardo Wurmus
00e6f55ddb
gnu: r-batchelor: Update to 1.18.1. 
* gnu/packages/bioconductor.scm (r-batchelor): Update to 1.18.1.

Change-Id: Ic541acacc7e02951f0b2cc6d08d257fe22d7d4b4
 2024-01-01 14:35:16 +01:00
Ricardo Wurmus
c8d1f64f40
gnu: r-genomeinfodb: Update to 1.38.5. 
* gnu/packages/bioconductor.scm (r-genomeinfodb): Update to 1.38.5.

Change-Id: I000bf46cc66ed4a6f1e44b12989326c121acde4c
 2024-01-01 14:35:16 +01:00
Ricardo Wurmus
2510849ec9
gnu: r-sparsearray: Update to 1.2.3. 
* gnu/packages/bioconductor.scm (r-sparsearray): Update to 1.2.3.

Change-Id: I5907db78a1261a3dbe0390737cc357bafbdb331e
 2024-01-01 14:35:16 +01:00
Ricardo Wurmus
31e882e4b1
gnu: r-genomicscores: Update to 2.14.3. 
* gnu/packages/bioconductor.scm (r-genomicscores): Update to 2.14.3.

Change-Id: I973721a2ba3a5c5d7e23c4063f363fea7bdfe77e
 2024-01-01 14:35:16 +01:00
Ricardo Wurmus
e15b95c126
gnu: r-metapod: Update to 1.10.1. 
* gnu/packages/bioconductor.scm (r-metapod): Update to 1.10.1.

Change-Id: Iafd5b48420d12f9fd02966c83914feb1ef38e510
 2024-01-01 14:35:16 +01:00
Ricardo Wurmus
5673484cbc
gnu: r-biocneighbors: Update to 1.20.1. 
* gnu/packages/bioconductor.scm (r-biocneighbors): Update to 1.20.1.

Change-Id: I34aa795404d8c083585f83d5a02810a9005bef32
 2024-01-01 14:35:16 +01:00
Ricardo Wurmus
a72c6ba19a
gnu: r-genomeinfodb: Update to 1.38.4. 
* gnu/packages/bioconductor.scm (r-genomeinfodb): Update to 1.38.4.

Change-Id: Icdd7237e7a4d15a6b9554fca77423148d6f7438e
 2024-01-01 14:35:16 +01:00
Ricardo Wurmus
92f179ab20
gnu: r-tximeta: Update to 1.20.1. 
* gnu/packages/bioconductor.scm (r-tximeta): Update to 1.20.1.

Change-Id: Id29bdc8c00f957854ed5ba38c2cbbb91e04bbf78
 2023-12-15 17:47:43 +01:00
Ricardo Wurmus
e19a7ca446
gnu: r-biomvrcns: Update to 1.42.2. 
* gnu/packages/bioconductor.scm (r-biomvrcns): Update to 1.42.2.

Change-Id: I956718d0ecb503546564434fbea82a886d4de9f4
 2023-12-15 17:47:43 +01:00
Ricardo Wurmus
5765ddc666
gnu: r-basilisk: Update to 1.14.1. 
* gnu/packages/bioconductor.scm (r-basilisk): Update to 1.14.1.

Change-Id: I7c05a536a58ca7bc7d24fdb5f39a420611bebf45
 2023-12-15 17:47:42 +01:00