Fixes <https://issues.guix.gnu.org/56633>.
Reported by Marius Bakke <marius@gnu.org>.
* guix/build-system/mozilla.scm (lower-mozilla): Pass NAME as the first
argument to LOWER when TARGET is true.
* guix/import/texlive.scm (tlpdb->package): Add VERSION argument; include
explicit version field in output.
(texlive->guix-package): Set default value for VERSION argument; adjust call
of tlpdb->package.
(texlive-recursive-import): Accept REPO and VERSION keyword arguments.
* guix/import/utils.scm (package->definition): Add a clause to deal with
output from tlpdb->package.
* guix/scripts/import/texlive.scm (%options): Add "recursive" option.
(guix-import-texlive): Honor "recursive" option.
* doc/guix.texi (Using TeX and LaTeX): Mention "recursive" option.
* guix/scripts/package.scm (list-installed): New procedure.
* guix/scripts/home.scm (%options, show-help): Add '--list-installed'.
(process-command): For 'describe' and 'list-generations', honor the
'list-installed option.
(display-home-environment-generation): Add #:list-installed-regex and
honor it.
(list-generations): Likewise.
* guix/scripts/utils.scm (pretty-print-table): New argument "left-pad".
* doc/guix.texi (Invoking Guix Home): Add information and example for
--list-installed flag.
Co-authored-by: Ludovic Courtès <ludo@gnu.org>
Previously the output of 'guix refresh --list-updaters' would be
non-deterministic, and likewise the order in which updaters are tried
would be non-deterministic.
Reported by zimoun <zimon.toutoune@gmail.com>.
* guix/upstream.scm (%updaters): Add call to 'sort'.
This patch updates Clojure to 1.11.1. It also adds the 'reset-class-timestamps
phase to the Clojure build system.
This phase makes sure the timestamp of compiled class files is set to a later
point in time than the timestamp of the corresponding Clojure source files. If
the timestamps of the class and source files are the same, the Clojure
compiler will compile the sources again which can lead to issues. This problem
has been discussed here [1]. The suggested solution was to keep/adjust the
timestamps of the class files.
[1] https://www.mail-archive.com/clojure@googlegroups.com/msg99928.html
* gnu/packages/clojure.scm (clojure): Update to 1.11.1 and update all of
LIBRARIES accordingly.
[arguments]: In 'unpack-library-sources' phase, copy from
"core-specs-alpha-src" and "spec-alpha-src" as well. Add
phases 'closure-spec-skip-macros', 'clojure-spec-compile',
'maven-classpath-properties', and 'reset-class-timestamps'.
* guix/build/clojure-build-system.scm (regular-jar-file?)
(reset-class-timestamps): New procedures.
(%standard-phases): Add 'reset-class-timestamps' phase.
Co-authored-by: Ludovic Courtès <ludo@gnu.org>
Previously, 'guix gc -d4m' would ignore Home generations. With this
change, they are treated like profiles and generations that match the
pattern are deleted.
* guix/scripts/gc.scm (guix-gc)[delete-generations]: Add call to
'home-generation-base'.
* doc/guix.texi (Invoking guix gc): Document the change.
I missed this remark from the review when pushing the last change.
* guix/import/pypi.scm(python->package-name): Replace the trailing '#t'-case
by a 'else'.
Trytond modules are Python packages, and treated like this in guix. Anyhow,
since they are add-ons for the “Trytond“ application, their guix package name
do not get the "python-" prefix like other Python modules, (see also
https://issues.guix.gnu.org/46057#1). This change disables adding the
"python-" prefix to the guix package name for Trytond modules when importing
and updating, thus inhibiting irritating messages like in this example:
$ guix refresh -u trytond-party
…
trytond-party: consider adding this propagated input: python-trytond-country
trytond-party: consider removing this propagated input: trytond-country
Handling this special case seems appropriate since (as of now) there are
about 165 packages for Trytond and the number is growing.
* guix/import/pypi.scm(python->package-name): Don't add "python-" prefix for
trytond packages.
'egg-source-url' did not return the URL, but the quoted expression. This did
break the updater, which expects the URL as a string.
* guix/import/egg.scm(egg-source-url): Remove.
(egg->guix-package)[egg-content]: Use quoted expression directly.
(latest-release): Call egg-uri instead of egg-source-url.
Fixes <https://issues.guix.gnu.org/56114>.
Reported by Maxime Devos <maximedevos@telenet.be>.
* guix/monad-repl.scm (%build-verbosity): New variable.
(evaluate/print-with-store): New procedure.
(run-in-store): Rewrite in terms of 'evaluate/print-with-store'.
(verbosity, lower, build): New meta-commands.
* doc/guix.texi (Using Guix Interactively): New node.
(The Store Monad): Link to it.
(Invoking guix repl): Likewise.
* doc/contributing.texi (Running Guix Before It Is Installed): Refer to
it.
(The Perfect Setup): Suggest 'guix install' rather than 'guix package -i'.
Fixes <https://issues.guix.gnu.org/56539>.
Fixes a bug where "guix shell -D pkg --export-manifest" would provide
the expansion of PKG's dependencies instead of a call to
'package-development-manifest' if that profile happened to be cached.
* guix/scripts/shell.scm (profile-cached-gc-root): Add clause for 'export-manifest?.
This effects packages hosted at github with source-uri like
…/releases/download/REPO-VERSION/REPO-VERSION.EXT.
E.g. ‘guix refresh udisks’ would fail to find the new release of ‘udisks’
before this change.
* guix/import/github.scm(updated-url): For one one of the
cases add missing 'prefix' and set new version.
Fixes <https://issues.guix.gnu.org/56441>.
Reported by zimoun <zimon.toutoune@gmail.com>.
Fixes a bug introduced in 4ff12d1de7 with
version 4 of the manifest format. A new 'guix time-machine' would
create a v4 manifest; when targeting an old revision (v3),
'generate-package-cache' would fail to read that manifest and abort.
Furthermore, an old Guix living in a new profile with a v4 manifest
would be unable to describe itself via (guix describe).
* guix/channels.scm (package-cache-file): Add 'format-version' field to
PROFILE.
(channel-instances->derivation): Pass #:format-version to
'profile-derivation'.
* guix/profiles.scm (%manifest-format-version): New variable.
(manifest->gexp): Add optional 'format-version' parameter.
[optional, entry->gexp]: Honor it.
(profile-derivation): Add #:format-version parameter and honor it.
(<profile>)[format-version]: New field.
(profile-compiler): Honor it.
* guix/build/profiles.scm (manifest-sexp->inputs+search-paths): Support
both versions 3 and 4. Remove unused 'properties' variable.
* tests/profiles.scm ("profile-derivation format version 3"): New test.
Version 2 was introduced in commit
dedb17ad01 (May 2015), which made it into
Guix 0.9.0.
* guix/profiles.scm (find-package): Remove.
(sexp->manifest)[infer-search-paths]: Remove.
Remove clauses for versions 0 and 1.
I'm looking at this as the Guix Data Service uses this behaviour to record and
display logs from inferior processes.
* guix/inferior.scm (open-bidirectional-pipe): Call dup2 for file descriptor
2, passing either the file number for the current error port, or a file
descriptor for /dev/null.
* tests/inferior.scm ("#:error-port stderr", "#:error-port pipe"): Add two new
tests that cover some of the #:error-port behaviour.
Previously, 'let' bindings could be rendered like this:
(let ((x 1) (y 2)
(z 3))
...)
With this change, each bindings goes in its own line.
Partly fixes <https://issues.guix.gnu.org/56297>.
Reported by Maxime Devos <maximedevos@telenet.be>.
* guix/scripts/style.scm (pretty-print-with-comments)[list-of-lists?]:
New procedure.
Use it.
* tests/style.scm: Add tests with 'let' and 'substitute-keyword-arguments'.
Previously, 'guix challenge' without arguments would list live store
items that had been locally built. This was deemed confusing,
especially since 'list-live' is an expensive operation.
* guix/scripts/challenge.scm (guix-challenge): Warn and exit with 0 when
FILES is empty.
* doc/guix.texi (Invoking guix challenge): Update accordingly.
Fixes <https://issues.guix.gnu.org/55499>.
Reported by Ricardo Wurmus <rekado@elephly.net>.
With this change, the manifest file created for:
guix install r r-seurat r-cistopic r-monocle3 r-cicero-monocle3 r-assertthat
goes from 5.7M to 176K. Likewise, on this profile, wall-clock time of:
GUIX_PROFILING=gc guix package -I
goes from 0.7s to 0.1s, with heap usage going from 55M to 9M.
* guix/profiles.scm (manifest->gexp)[optional]: New procedure.
[entry->gexp]: Turn into a monadic procedure. Return a 'repeated' sexp
if ENTRY was already visited before.
Adjust caller accordingly. Bump manifest version.
(sexp->manifest)[sexp->manifest-entry]: Turn into a monadic procedure.
Add case for 'repeated' nodes. Add each entry to the current state
vhash.
Add clause for version 4 manifests.
[sexp->manifest-entry/v3]: New procedure, with former
'sexp->manifest-entry' code.
* tests/profiles.scm ("deduplication of repeated entries"): New test.
* guix/build/profiles.scm (manifest-sexp->inputs+search-paths)[let-fields]:
New macro.
Use it. Expect version 4. Add clause for 'repeated' nodes.
Fixes <https://issues.guix.gnu.org/56338>.
Starting from 53b9c27aa5, 'guix refresh -u'
would stop upon the first failure to determine upstream releases. This
fixes that.
* guix/upstream.scm (package-update): Warn rather than update.
Until now, those messages would be accumulated and displayed all at
once, when a '\n' was finally emitted by 'guix substitute'. In the
meantime, clients would remain silent.
* guix/status.scm (bytevector-index): Change 'number' parameter to
'numbers' and adjust accordingly.
(build-event-output-port): Pass both #\newline and #\return to
'bytevector-index'.
* tests/status.scm ("build-output-port, daemon messages with LF"): New
test.
This file is no longer produced by our version of Dub.
* guix/build/dub-build-system.scm (build, check): Remove obsolete
substitutions.
Signed-off-by: Tobias Geerinckx-Rice <me@tobias.gr>
* guix/build-system/dub.scm (default-ld-gold-wrapper): New procedure.
(lower): Add a LD-GOLD-WRAPPER to the keyword arguments, and to the
resulting bag's…
[build-inputs]: …build inputs.
Signed-off-by: Tobias Geerinckx-Rice <me@tobias.gr>
This avoids an exception when generating images, where the reading of boot
parameters fails.
* guix/scripts/system.scm (perform-action): Inline menu-entries in to bootcfg.
This incompatible change fixes an inconsistency with other commands
where '-L' is short for '--load-path'.
* guix/scripts/refresh.scm (%options): Add --load-path option from
%STANDARD-BUILD-OPTIONS. Remove #\L shortcut for --list-updaters, and
remove --load-path option that lacked the #\L shortcut.
(show-help): Update accordingly.
* doc/guix.texi (Invoking guix refresh): Update accordingly.
This ensures we print '#:key value' rather than insert a newline
between '#:key' and 'value' as was the case before.
* guix/scripts/style.scm (pretty-print-with-comments)[print-sequence]:
When ITEM is a keyword, loop with FIRST? = true.
* tests/style.scm: Add test.
Chicken eggs do not always contain version information, yet dependant packages
often rely on this information being present. Thus, add a version field if it
is missing.
* guix/build/chicken-build-system.scm (stamp-egg-version): New variable.
(%standard-phases): Add ‘stamp-egg-version’.
Signed-off-by: Liliana Marie Prikler <liliana.prikler@gmail.com>
The ld-wrapper from gcc-toolchain records a reference to the library
path through rpath, but this is not needed. By explicitely using rpath
flags instead, we save 150 MB of closure.
* guix/self.scm (quiet-guile): Do not record reference to gcc-toolchain.
* guix/build-system/renpy.scm (build): Drop trailing #t.
(install, install-desktop-file): Likewise. Also add inputs and use
search-input-file for /bin/sh and /bin/renpy.
Previous, "guix shell -p /path/to/profile" would have manifest/guix.scm
auto-detection turned on.
* guix/scripts/shell.scm (auto-detect-manifest)[options-contain-payload?]:
Return #t for 'profile.
Commit 2a34333d0c led to a couple of test
failures in tests/packages.scm and tests/lint.scm due to the different
ordering.
* guix/packages.scm (%supported-systems): Move %64BIT-SUPPORTED-SYSTEMS
first.
* guix/channels.scm (package-cache-file): Add a throw handler around
the generate-package-cache call, and print backtrace in it.
Signed-off-by: Ludovic Courtès <ludo@gnu.org>
Fixes <https://issues.guix.gnu.org/55987>.
Reported by John Kehayias <john.kehayias@protonmail.com>.
* guix/upstream.scm (package-update): Instead of calling
'package-latest-release*', call 'package-latest-release' and distinguish
between "up-to-date" and "unknown upstream releases". Raise an error in
the latter case.
hex.pm is a package repository for Erlang and Elixir.
* guix/scripts/import.scm (importers): Add "hexpm".
* guix/scripts/import/hexpm.scm, guix/import/hexpm.scm,
guix/hexpm-download.scm: New files.
* guix/import/utils.scm (source-spec->object): Add "hexpm-fetch" to list of
fetch methods.
* guix/upstream.scm (package-update/hexpm-fetch): New function.
(%method-updates) Add it.
* Makefile.am: Add them.
This is a followup to 7c52cad046.
* guix/scripts/pull.scm (guix-pull): Move cache directory validation
code to...
(validate-cache-directory-ownership): ... here. New procedure. Use
SRFI-71 instead of SRFI-11. Use 'formatted-message' for the error
message, with ASCII quotation marks, and use Texinfo markup for
'&fix-hint'.
Fixes <https://issues.guix.gnu.org/55809>.
Reported by Vagrant Cascadian <vagrant@reproducible-builds.org>.
* guix/scripts/challenge.scm (make-directory-writable): New procedure.
(call-with-mismatches)[restore-file*]: New procedure.
Use it instead of 'restore-file'.
* guix/import/hackage.scm (filter-dependencies): Convert OWN-NAMES
to lowercase before filtering.
(hackage-module->sexp): Remove #f from OWN-NAMES, which is used for
unnamed (default) libraries.
* tests/hackage.scm (test-cabal-internal-library-ignored): Add mismatched
uppercase letters.
Fixes <https://issues.guix.gnu.org/54760>.
* guix/import/hackage.scm (filter-dependencies): Support multiple
OWN-NAMES.
(hackage-module->sexp): Filter OWN-NAMES from HACKAGE-DEPENDENCIES and
HACKAGE-NATIVE-DEPENDENCIES.
* tests/hackage.scm (test-cabal-internal-library-ignored): New variable.
("hackage->guix-package test internal libraries are ignored"): New testcase.
* guix/import/cabal.scm (make-cabal-parser): Add name to section.
(is-lib): Add optional name to regular expression.
(lex-rx-res): Support selecting different substring.
(lex-lib): Match 2nd substring from IS-LIB.
(lex-line): Adapt to changes for lex-lib.
(cabal-library): Add name field and export CABAL-LIBRARY-NAME.
(eval): Remove special case for 'library, which is not required any more.
(make-cabal-section): Move special case for LIBRARY.
* tests/hackage.scm (test-read-cabal-library-name): New variable.
("read-cabal test 1"): Adapt testcase to changed internal structure.
("read-cabal test: library name"): New testcase.
* guix/import/cabal.scm (lex-word): Add colon to delimiters.
* tests/hackage.scm (test-cabal-property-no-space): New variable.
("hackage->guix-package test properties without space"): New test.
* guix/import/cabal.scm (is-layout-property): Do not expect end of line.
(lex-layout-property): Check for newline.
(lex-property): Stop reading on closing curly bracket.
* tests/hackage.scm (test-read-cabal-2): New variable.
("read-cabal test: if brackets on the same line"): New test.
Fixes <https://issues.guix.gnu.org/54752>.
* guix/import/cabal.scm (make-cabal-parser): Replace if-then-else grammar case with elif-else, modify if-then accordingly.
(is-elif): New procedure.
(lex-elif): Likewise.
(is-id): Add elif keyword.
(lex-word): Add test for elif.
* tests/hackage.scm (test-cabal-if): New variale.
(test-cabal-else): Likewise.
(test-cabal-elif): Likewise.
(test-cabal-elif-brackets): Likewise.
(match-ghc-elif): Likewise.
("hackage->guix-package test lonely if statement",
"hackage->guix-package test else statement",
"hackage->guix-package test elif statement",
"hackage->guix-package test elif statement with brackets"): New tests.
New users frequently run ‘sudo guix pull’ which breaks subsequent
unprivileged ‘guix pull’s until manually fixed with chmod -R.
* guix/scripts/pull.scm (guix-pull): Fail if the cache directory (or
its innermost extant parent) is not owned by the user pulling the Guix,
with a hint about ‘sudo -i’.
* guix/diagnostics.scm (source-properties->location): The location column is
0-indexed, not 1-indexed (the same as in source-properties, so the code is
accurate).
* guix/utils.scm: Fix copyright lines and order imports.
(edit-expression): Fix typo in doc. Add a new 'include-trailing-newline?'
keyword argument. Update doc.
(delete-expression): New procedure.
Fixes <https://issues.guix.gnu.org/55721>.
Starting from the switch to functional object caches ca.
9e5812ac59, we would be losing accumulated
caches when aborting to the build handler. This patch fixes that.
In particular, by preserving '%reference-cache-id', we avoid redundant
'query-references' RPCs, which accounted for a large part of the extra
processing time.
* guix/store.scm (build-accumulator): When returning an <unresolved>
node, call 'set-store-connection-caches!' before and after to preserve
caches.
(map/accumulate-builds): Pass STORE as the first argument to
the <unresolved> continuation.
Running `guix archive --authorize` sets /etc/guix/acl to 600
via with-atomic-file-output via mkstemp!.
Then running `guix substitute --help/--version` fails on "permission denied".
While "guix substitute" is an internal tool, the options --help and --version
exist and you should be able to run those from the command line.
* guix/scripts/substitute.scm (guix-substitute): Earlier check for
--help or --version.
Signed-off-by: Ludovic Courtès <ludo@gnu.org>
Fixes <https://issues.guix.gnu.org/55480>.
Reported by Greg Hogan <code@greghogan.com>.
* guix/scripts/package.scm (find-packages-by-description): When PACKAGE1
and PACKAGE2 have the same name, sort by version.
Turns out this platform doesn't have a bootstrap tarball and should be
considered as not supported for now.
* guix/platforms/s390.scm: Remove it.
* Makefile.am (MODULES): Adapt it.
* doc/guix.texi (Foreign Architectures): Ditto.
Partly fixes <https://issues.guix.gnu.org/55499>.
Reported by Ricardo Wurmus <rekado@elephly.net>.
For a profile built with:
guix install r-seurat r-cistopic r-monocle3 r-cicero-monocle3
this reduces the size of the 'manifest' file from 6.4M to 5.6M (12%).
* guix/profiles.scm (manifest->gexp)[entry->gexp]: When PROPERTIES is
empty, do not emit a 'properties' field.
Rather than raising the exception.
I'm looking at this as the linux-module-build-system is broken in such a way
that this causes the derivation linter to error. With this change, it
correctly reports the issue.
* guix/lint.scm (check-derivation): Catch all exceptions.
* guix/scripts/package.scm (options->installable): Add TRANSFORM
argument, to be able to directly transform the new packages before
creating their manifest entries.
(process-actions): Remove transform-entry, and step3, transforming
directly in step2.
* tests/guix-package.sh: Add test.
Signed-off-by: Ludovic Courtès <ludo@gnu.org>
Also factorize the --system and --target build options. Check that the passed
system and target arguments are known platforms.
* doc/guix.texi (Additional Build Options): Document the new --list-systems
and --list-targets options.
* guix/scripts/build.scm (show-cross-build-options-help,
show-emulated-build-options-help, list-systems, list-targets): New procedures.
(%standard-cross-build-options, %standard-emulated-build-options): New
variables.
(show-help): Remove --system and --target entries and use
show-cross-build-options-help and show-emulated-build-options-help procedures instead.
(%options): Remove --system and --target entries and use
%standard-cross-build-options and %standard-emulated-build-options variables instead.
* guix/scripts/archive.scm (show-help, %options): Adapt them.
* guix/scripts/environment.scm: Ditto.
* guix/scripts/graph.scm: Ditto.
* guix/scripts/pack.scm: Ditto.
* guix/scripts/pull.scm: Ditto.
* guix/scripts/size.scm: Ditto.
* guix/scripts/weather.scm: Ditto.
Signed-off-by: Mathieu Othacehe <othacehe@gnu.org>
* guix/build/python-build-system.scm (site-packages): Change let* to let for
readability and since let* is unused.
Signed-off-by: Maxim Cournoyer <maxim.cournoyer@gmail.com>
Callers can supply alternative headers as with 'http-fetch'.
* guix/http-client.scm (http-fetch/cached): Add '#:headers' argument.
Signed-off-by: Ludovic Courtès <ludo@gnu.org>
* guix/build-system/elm.scm (default-elm-core): New variable.
(default-elm-json): Likewise
(lower): Use them as implicit inputs when applicable.
Signed-off-by: Ludovic Courtès <ludo@gnu.org>
This reduces the wall-clock time of:
./pre-inst-env guix system vm gnu/system/examples/desktop.tmpl -n
from 2m13s to 53s (the timings depend on which derivations have already
been built and are in store; in this case, many were missing).
* guix/store.scm (default-cutoff): New variable.
(map/accumulate-builds): Use it. Parameterize it in recursive calls to
have decaying cutoff.
Users of 'mcached' can now specify a cache ID; furthermore, the cache
hit rate is automatically recorded for all the caches accessed with
'mcached'.
* guix/store.scm (%max-store-connection-caches)
(%store-connection-cache-names): New variables.
(recorder-for-cache): New procedure.
(record-cache-lookup!): Add 'cache-id' parameter and rewrite in terms of
'recorder-for-cache'.
(lookup-cached-object): Add 'cache-id' parameter and honor it.
(%mcached): Add #:cache parameter and honor it.
(mcached): Add '=>' keyword and corresponding clauses.
* guix/cpu.scm (current-cpu): Set flags at the beginning of the loop.
Read from '/proc/cpuinfo' until the end of the file. Add match options
for discovering armhf/aarch64 cpu configurations.
For the ‘why’, see the docstring next to $SSL_CERT_DIR. In later commits,
packages will be changed to use these variables and the variables will be
added to more packages.
* guix/search-paths.scm ($SSL_CERT_DIR, $SSL_CERT_FILE): New variables.
* doc/guix.texi (Search Paths): Document them.
Signed-off-by: Ludovic Courtès <ludo@gnu.org>
Fixes <https://issues.guix.gnu.org/54723>.
Reported by Guillaume Le Vaillant <glv@posteo.net>.
Regression introduced in f743f2046b.
With commit f743f2046b, responses to
pipelined GETs would end up being written concurrently by many threads.
Thus the body of those responses could be interleaved and garbled.
* guix/scripts/publish.scm: Revert
f743f2046b.
* tests/publish.scm ("/*.narinfo pipeline"): New test.
* guix/scripts/pack.scm: Remove duplicated copyright line.
(debian-archive)[single-entry]: Match one or anything, not one or zero.
Reported-by: jgart <jgart@dismail.de>
Without this the git-fetch GEXP is run in an environment that uses ASCII
character encoding when strings are crossing the Guile - C boundary. It means
that e.g. tag names that have Unicode chars in them will cause problems,
e.g. when walking and deleting the .git directory.
An example in the wild: https://github.com/klauspost/pgzip/tags
Fixes <https://issues.guix.gnu.org/54893>.
* guix/git-download.scm (git-fetch): Call 'setenv' and 'setlocale' to
set it to en_US.utf8.
* gnu/packages/commencement.scm (glibc-utf8-locales-final): Make public.
Add 'properties' field.
Co-authored-by: Ludovic Courtès <ludo@gnu.org>
* guix/ui.scm (package->recutils): Add #:highlighting parameter and use it.
(display-search-results): Add #:regexps parameter; call
'colorize-full-matches' and pass #:highlighting.
* guix/scripts/package.scm (process-query): Pass #:regexps to
'display-search-results'.
* guix/scripts/home.scm (search): Likewise.
* guix/scripts/system/search.scm (service-type->recutils): Add #:highlighting
parameter and use it.
* guix/scripts/system/search.scm (service-type->recutils): Highlight the
value of the 'name' field.
* guix/ui.scm (package->recutils): Likewise for 'name' and 'version'.
Until now dots were read as symbols.
* guix/scripts/style.scm (read-with-comments)[dot]: New variable.
[dot?, reverse/dot]: New procedures.
Use 'reverse/dot' instead of 'reverse' when reading lists.
* tests/style.scm ("read-with-comments: dot notation")
("((a . 1) (b . 2))", "(a b c . boom)"): New tests.
