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Author SHA1 Message Date
Janneke Nieuwenhuizen
741a587958
gnu: autoconf: Fix cross-build. 
This is a follow-up to commit
    8fa17cb6d5
    gnu: autoconf: Remove input labels.

* gnu/packages/autotools.scm (autoconf-2.69)[arguments]: Use "#~" instead of
"'".
 2023-05-11 09:03:15 +02:00
Eric Bavier
b4e5844700
gnu: kodi: Fix build against latest mesa. 
* gnu/packages/patches/kodi-mesa-eglchromium.patch: New file.
* gnu/local.mk (dist_patch_DATA): Add it.
* gnu/packages/kodi.scm (kodi)[source]: Use it.
 2023-05-10 13:56:10 -05:00
Eric Bavier
7e15287055
gnu: kodi: Fix build with latest glibc. 
* gnu/packages/kodi.scm (kodi)[inputs]: Use most recent 'fmt' and 'spdlog'
packages.
* gnu/packages/logging.scm (spdlog-for-kodi): Delete.
 2023-05-10 13:56:04 -05:00
Ricardo Wurmus
b7534e4b5d
gnu: Add python-pytorch-lightning. 
* gnu/packages/machine-learning.scm (python-pytorch-lightning): New variable.
 2023-05-10 19:27:08 +02:00
Ricardo Wurmus
ff59c49c44
gnu: Add python-jsonargparse. 
* gnu/packages/python-xyz.scm (python-jsonargparse): New variable.
 2023-05-10 19:27:08 +02:00
Ricardo Wurmus
e171a8bd88
gnu: Add python-docstring-parser. 
* gnu/packages/python-xyz.scm (python-docstring-parser): New variable.
 2023-05-10 19:27:08 +02:00
Ricardo Wurmus
2ebd5b9adf
gnu: Add python-starsessions-for-pytorch-lightning. 
* gnu/packages/python-web.scm (python-starsessions-for-pytorch-lightning): New variable.
 2023-05-10 19:27:08 +02:00
Ricardo Wurmus
acb958938a
gnu: Add python-typeshed-client. 
* gnu/packages/python-xyz.scm (python-typeshed-client): New variable.
 2023-05-10 19:27:08 +02:00
Ricardo Wurmus
7b9e90e40d
gnu: python-torchvision: Update to 0.15.2. 
* gnu/packages/machine-learning.scm (python-torchvision): Update to 0.15.2.
[build-system]: Use pyproject-build-system.
[arguments]: Remove custom 'check phase.
 2023-05-10 19:27:08 +02:00
Ricardo Wurmus
452fec7226
gnu: python-arrow: Update to 1.2.3. 
* gnu/packages/time.scm (python-arrow): Update to 1.2.3.
 2023-05-10 19:27:08 +02:00
Ricardo Wurmus
4d673ba743
gnu: Add python-types-requests. 
* gnu/packages/python-xyz.scm (python-types-requests): New variable.
 2023-05-10 19:27:08 +02:00
Ricardo Wurmus
26e2610673
gnu: Add python-types-urllib3. 
* gnu/packages/python-xyz.scm (python-types-urllib3): New variable.
 2023-05-10 19:27:07 +02:00
Ricardo Wurmus
cb37197a24
gnu: Add python-fastapi-for-pytorch-lightning. 
* gnu/packages/python-web.scm (python-fastapi-for-pytorch-lightning): New variable.
 2023-05-10 19:27:07 +02:00
Ricardo Wurmus
3f05f625ea
gnu: Add python-starlette-for-fastapi-0.88. 
* gnu/packages/python-web.scm (python-starlette-for-fastapi-0.88): New variable.
 2023-05-10 19:27:07 +02:00
Ricardo Wurmus
463a598585
gnu: Add python-inquirer. 
* gnu/packages/machine-learning.scm (python-inquirer): New variable.
 2023-05-10 19:27:07 +02:00
Ricardo Wurmus
9220dee755
gnu: Add python-readchar. 
* gnu/packages/machine-learning.scm (python-readchar): New variable.
 2023-05-10 19:27:07 +02:00
Ricardo Wurmus
96c51a9dbf
gnu: python-scikit-optimize: Fix build with newer numpy and sklearn. 
* gnu/packages/patches/python-scikit-optimize-1148.patch,
gnu/packages/patches/python-scikit-optimize-1150.patch: New patches.
* gnu/local.mk (dist_patch_DATA): Add them.
* gnu/packages/python-science.scm (python-scikit-optimize)[source]: Fetch with
git and apply patches.
 2023-05-10 19:27:07 +02:00
Ricardo Wurmus
ff3c55bb98
gnu: Add python-dateutils. 
* gnu/packages/time.scm (python-dateutils): New variable.
 2023-05-10 19:27:07 +02:00
Ricardo Wurmus
d071bc5a82
gnu: python-pillow-simd: Update to 9.2.0. 
* gnu/packages/python-xyz.scm (python-pillow-simd): Update to 9.2.0.
 2023-05-10 19:27:07 +02:00
Ricardo Wurmus
9e1cbc62e5
gnu: python-blessed: Update to 1.20.0. 
* gnu/packages/python-xyz.scm (python-blessed): Update to 1.20.0.
[source]: Simplify snippet.
[build-system]: Use pyproject-build-system.
[arguments]: Use test-flags to avoid pytest-coverage; remove custom 'check phase.
[propagated-inputs]: Remove python-jinxed python-six.
[native-inputs]: Remove python-mock.
 2023-05-10 19:27:07 +02:00
Ricardo Wurmus
8f97d96ddf
gnu: Add python-torchmetrics. 
* gnu/packages/machine-learning.scm (python-torchmetrics): New variable.
 2023-05-10 19:27:07 +02:00
Ricardo Wurmus
1aa1a6a816
gnu: Add python-types-setuptools. 
* gnu/packages/python-xyz.scm (python-types-setuptools): New variable.
 2023-05-10 19:27:07 +02:00
Ricardo Wurmus
d32334eea2
gnu: Add python-mir-eval. 
* gnu/packages/python-xyz.scm (python-mir-eval): New variable.
 2023-05-10 19:27:07 +02:00
Ricardo Wurmus
e4480090e2
gnu: Add python-lightning-utilities. 
* gnu/packages/machine-learning.scm (python-lightning-utilities): New variable.
 2023-05-10 19:27:07 +02:00
Ricardo Wurmus
7afddfbfa0
gnu: Add python-lightning-cloud. 
* gnu/packages/machine-learning.scm (python-lightning-cloud): New variable.
 2023-05-10 19:27:07 +02:00
Ricardo Wurmus
b6b6e89419
gnu: python-pytorch-for-r-torch: Define as alias for python-pytorch. 
* gnu/packages/machine-learning.scm (python-pytorch-for-r-torch): Remove
duplicate definition.
 2023-05-10 19:27:07 +02:00
Ricardo Wurmus
b60ea1cd17
gnu: python-traitlets: Update to 5.9.0. 
* gnu/packages/python-xyz.scm (python-traitlets): Update to 5.9.0.
[build-system]: Use pyproject-build-system.
[native-inputs]: Add python-hatchling, python-pre-commit, and
python-pytest-mock.
[arguments]: Remove custom 'check phase.
 2023-05-10 19:27:07 +02:00
Ricardo Wurmus
e43ceae59f
gnu: Add python-deepdiff. 
* gnu/packages/python-xyz.scm (python-deepdiff): New variable.
 2023-05-10 19:27:07 +02:00
Ricardo Wurmus
e652b44725
gnu: python-pytorch: Update to 1.13.1. 
* gnu/packages/machine-learning.scm (python-pytorch): Update to  1.13.1.
[source]: Update snippet.
 2023-05-10 19:27:07 +02:00
Guillaume Le Vaillant
e2eb43f945
gnu: python-shiboken-2: Add fix for python-pyside-2. 
* gnu/packages/qt.scm (python-shiboken-2)[arguments]: Add
  'workaround-importlib-error' phase.
 2023-05-10 18:00:37 +02:00
Christopher Baines
e0c35d1578
gnu: guile-fibers-next: Update to 1.2.0-2.745bd40. 
* gnu/packages/guile-xyz.scm (guile-fibers-next): Update to 1.2.0-2.745bd40.

Signed-off-by: Christopher Baines <mail@cbaines.net>
 2023-05-10 11:08:07 +01:00
Christopher Baines
98c3931641
services: guix-build-coordinator-agent: Support max-parallel-uploads. 
This should be usable with the new guile-gnutls.

* gnu/services/guix.scm
(guix-build-coordinator-agent-configuration-max-parallel-uploads): New
procedure.
* gnu/services/guix.scm (guix-build-coordinator-agent-shepherd-services): Use
the new argument.
* doc/guix.texi (Guix Services): Document it.
 2023-05-10 11:06:20 +01:00
Christopher Baines
5ff8ec12ef
gnu: guix-build-coordinator: Update to 0-81.3f6473c. 
* gnu/packages/package-management.scm (guix-build-coordinator): Update to
0-81.3f6473c.
 2023-05-10 11:06:02 +01:00
Christopher Baines
5e1e674421
gnu: guile-gnutls: Update to 3.7.12. 
* gnu/packages/tls.scm (guile-gnutls): Update to 3.7.12.
[source]: Switch to a tarball, to avoid a circular dependency if guile-gnutls
is used in git-download.
[arguments]: Remove phase changes for building from Git.
[native-inputs]: Remove autoconf and automake as they're now unnecessary.

Signed-off-by: Christopher Baines <mail@cbaines.net>
 2023-05-10 10:41:03 +01:00
Ludovic Courtès
357e0b2690
gnu: cuirass: Update to 4a8a4bc. 
Fixes <https://issues.guix.gnu.org/63389>.

* gnu/packages/ci.scm (cuirass): Update to 4a8a4bc.
[arguments]: Remove 'set-PATH-for-tests' and 'disable-remote-tests'
phases, which are unnecessary.  In 'wrap-program' phase, check for
"guile-gnutls".
[inputs]: Replace GUILE-FIBERS with GUILE-FIBERS-1.1 and GNUTLS with
GUILE-GNUTLS.
 2023-05-10 00:23:53 +02:00
Ludovic Courtès
fbea62f829
gnu: emacs-gerbil-mode: Move to scheme.scm. 
This fixes a bug due to a top-level circular reference:

  $ guix show scheme48
  [...]
  ice-9/boot-9.scm:1685:16: In procedure raise-exception:
  error: gerbil: unbound variable

* gnu/packages/emacs-xyz.scm (emacs-gerbil-mode): Move to...
* gnu/packages/scheme.scm (emacs-gerbil-mode): ... here.
 2023-05-10 00:23:53 +02:00
Ludovic Courtès
1be5bf5604
tests: docker-system: Add missing import. 
This is a followup to f518882725.

* gnu/tests/docker.scm (run-docker-system-test)["load system image and
run it"]: Use (guix build utils).
 2023-05-10 00:23:52 +02:00
Ludovic Courtès
6a33f674b9
system: Fix reference to Hurd bug in comment. 
* gnu/system.scm (hurd-multiboot-modules): Fix bug reference in
comment.
 2023-05-10 00:23:52 +02:00
Mark H Weaver
7f89eee664
gnu: icecat: Update to 102.11.0-guix0-preview1 [security fixes]. 
Includes fixes for CVE-2023-32205, CVE-2023-32206, CVE-2023-32207,
CVE-2023-32211, CVE-2023-32212, CVE-2023-32213, CVE-2023-32214, and
CVE-2023-32215.

* gnu/packages/gnuzilla.scm (%icecat-base-version, %icecat-build-id): Update.
(icecat-source): Update gnuzilla commit, base version, and hashes.
 2023-05-09 14:45:39 -04:00
Liliana Marie Prikler
5b58608f56
gnu: Add python-clinguin. 
* gnu/packages/potassco.scm (python-clinguin): New variable.
 2023-05-09 19:54:27 +02:00
Ricardo Wurmus
a9bd722d67
gnu: python-fastapi: Do not delete tests, and add orjson. 
* gnu/packages/python-web.scm (python-fastapi)[arguments]: Remove all custom
phases; ignore two test files.
[propagated-inputs]: Add python-orjson.
 2023-05-09 19:54:27 +02:00
Liliana Marie Prikler
0f7d8a8305
gnu: Add python-fastapi. 
* gnu/packages/python-web.scm (python-fastapi): New variable.
 2023-05-09 19:43:44 +02:00
Liliana Marie Prikler
dd3ee6073e
gnu: python-databases: Revise description. 
* gnu/packages/databases.scm (python-databases)[synopsis]: Spell out
“Asynchronous”.
[description]: Mention that it's a wrapper around other libraries using
SQLAlchemy.
 2023-05-09 19:43:44 +02:00
Liliana Marie Prikler
8f01f084d3
gnu: python-databases: Update to 0.7.0. 
* gnu/packages/databases.scm (python-databases): Update to 0.7.0.
 2023-05-09 19:43:44 +02:00
Liliana Marie Prikler
966fd0bfdc
gnu: python-aiosqlite: Update to 0.18.0. 
* gnu/packages/databases.scm (python-aiosqlite): Update to 0.18.0.
[source]: Use git-fetch and git-reference.
[build-system]: Use pyproject-build-system.
[arguments]: Adjust accordingly.
[propagated-inputs]: Remove.
[native-inputs]: Remove python-aiounittest.
Add python-flit-core, python-coverage and python-mypy.
 2023-05-09 19:43:44 +02:00
Liliana Marie Prikler
3cc9e00473
gnu: python-aiomysql: Update to 0.1.1. 
* gnu/packages/databases.scm (python-aiomysql): Update to 0.1.1.
[build-system]: Change to pyproject-build-system.
 2023-05-09 19:43:43 +02:00
Liliana Marie Prikler
8d62db6b54
gnu: python-pymysql: Update to 1.0.2. 
* gnu/packages/databases.scm (python-pymysql): Update to 1.0.2.
 2023-05-09 19:43:43 +02:00
Ricardo Wurmus
b09e87be26
gnu: python-sqlalchemy: Use pyproject-build-system. 
* gnu/packages/databases.scm (python-sqlalchemy)[arguments]: Replace custom
'check phase with #:test-flags.
[build-system]: Use pyproject-build-system.
 2023-05-09 19:43:43 +02:00
Liliana Marie Prikler
98e943435f
gnu: python-sqlalchemy: Update to 1.4.42. 
* gnu/packages/databases.scm (python-sqlalchemy): Update to 1.4.42.
 2023-05-09 19:20:18 +02:00
Liliana Marie Prikler
851199ef57
gnu: python-starlette: Update to 0.25.0. 
* gnu/packages/python-web.scm (python-starlette): Update to 0.25.0.
[source]: Switch to git-fetch and git-reference.
[build-system]: Use pyproject-build-system.
[native-inputs]: Add python-hatchling, python-httpx, python-pytest, and
python-typing-extensions-next.
 2023-05-09 19:20:18 +02:00
Christopher Baines
a759cbffaf
services: guix-build-coordinator: Support extra environment vars. 
I'm looking at this because I need to do some debugging of Guile's GC, and
there are some useful environment variables for that, but it should be
generally useful.

* gnu/services/guix.scm (guix-build-coordinator-configuration-extra-environment-variables):
New procedure.
(guix-build-coordinator-shepherd-services): Pass the environment variables to
the shepherd.
* doc/guix.texi (Guix Services): Document it.
 2023-05-09 16:19:21 +01:00
Efraim Flashner
c1ffe2f21b
service: qemu-binfmt: Remove broken qemu targets. 
* gnu/services.virtualization.scm (%qemu-platforms): Remove %i486,
%aarch64be.
 2023-05-09 17:27:49 +03:00
Efraim Flashner
3f00f46ada
Revert "gnu: rust-bootstrap: Remove aarch64 as a supported architecture." 
This reverts commit c56d57110d.

rust-bootstrap *IS* supported on aarch64-linux, and the build farm will
catch up eventually.
 2023-05-09 16:54:29 +03:00
Ricardo Wurmus
7e421c1f5a
gnu: r-scran: Update to 1.28.1. 
* gnu/packages/bioconductor.scm (r-scran): Update to 1.28.1.
 2023-05-09 15:24:15 +02:00
Ricardo Wurmus
0880f325b7
gnu: r-scuttle: Update to 1.10.1. 
* gnu/packages/bioconductor.scm (r-scuttle): Update to 1.10.1.
 2023-05-09 15:24:15 +02:00
Ricardo Wurmus
8c7ddd3a44
gnu: r-chromvar: Update to 1.22.1. 
* gnu/packages/bioconductor.scm (r-chromvar): Update to 1.22.1.
 2023-05-09 15:24:15 +02:00
Ricardo Wurmus
d850b72346
gnu: r-hdf5array: Update to 1.28.1. 
* gnu/packages/bioconductor.scm (r-hdf5array): Update to 1.28.1.
[propagated-inputs]: Add r-s4arrays.
 2023-05-09 15:24:15 +02:00
Ricardo Wurmus
3bdd6fb256
gnu: r-s4vectors: Update to 0.38.1. 
* gnu/packages/bioconductor.scm (r-s4vectors): Update to 0.38.1.
 2023-05-09 15:24:15 +02:00
Ricardo Wurmus
da8638facb
gnu: r-preprocesscore: Update to 1.62.1. 
* gnu/packages/bioconductor.scm (r-preprocesscore): Update to 1.62.1.
 2023-05-09 15:24:15 +02:00
Ricardo Wurmus
6b2a0aab19
gnu: r-iclusterplus: Update to 1.36.1. 
* gnu/packages/bioconductor.scm (r-iclusterplus): Update to 1.36.1.
 2023-05-09 15:24:15 +02:00
Ricardo Wurmus
c96ebf4cf9
gnu: r-clusterprofiler: Update to 4.8.1. 
* gnu/packages/bioconductor.scm (r-clusterprofiler): Update to 4.8.1.
 2023-05-09 15:24:15 +02:00
Ricardo Wurmus
f7642f34d0
gnu: r-dose: Update to 3.26.1. 
* gnu/packages/bioconductor.scm (r-dose): Update to 3.26.1.
 2023-05-09 15:24:15 +02:00
Ricardo Wurmus
4228100215
gnu: r-linnorm: Update to 2.24.1. 
* gnu/packages/bioconductor.scm (r-linnorm): Update to 2.24.1.
 2023-05-09 15:24:15 +02:00
Ricardo Wurmus
c6c69d4cc6
gnu: r-dnacopy: Update to 1.74.1. 
* gnu/packages/bioconductor.scm (r-dnacopy): Update to 1.74.1.
 2023-05-09 15:24:15 +02:00
Ricardo Wurmus
c846a694a7
gnu: r-scaledmatrix: Update to 1.8.1. 
* gnu/packages/bioconductor.scm (r-scaledmatrix): Update to 1.8.1.
 2023-05-09 15:24:15 +02:00
Ricardo Wurmus
95d5a918a2
gnu: r-glmgampoi: Update to 1.12.1. 
* gnu/packages/bioconductor.scm (r-glmgampoi): Update to 1.12.1.
 2023-05-09 15:24:15 +02:00
Ricardo Wurmus
75869a8a94
gnu: r-oligo: Update to 1.64.1. 
* gnu/packages/bioconductor.scm (r-oligo): Update to 1.64.1.
 2023-05-09 15:24:15 +02:00
Ricardo Wurmus
a4b04c06ab
gnu: r-summarizedexperiment: Update to 1.30.1. 
* gnu/packages/bioconductor.scm (r-summarizedexperiment): Update to 1.30.1.
[propagated-inputs]: Add r-s4arrays.
 2023-05-09 15:24:15 +02:00
Ricardo Wurmus
c70787f552
gnu: r-scmap: Update to 1.22.1. 
* gnu/packages/bioconductor.scm (r-scmap): Update to 1.22.1.
 2023-05-09 15:24:15 +02:00
Ricardo Wurmus
0fd93c81be
gnu: r-rhdf5filters: Update to 1.12.1. 
* gnu/packages/bioconductor.scm (r-rhdf5filters): Update to 1.12.1.
 2023-05-09 15:24:15 +02:00
Ricardo Wurmus
4b7a06b839
gnu: r-pcaexplorer: Update to 2.26.1. 
* gnu/packages/bioconductor.scm (r-pcaexplorer): Update to 2.26.1.
 2023-05-09 15:24:15 +02:00
Ricardo Wurmus
37f44c278f
gnu: r-impute: Update to 1.74.1. 
* gnu/packages/bioconductor.scm (r-impute): Update to 1.74.1.
 2023-05-09 15:24:14 +02:00
Ricardo Wurmus
ef3ce37eeb
gnu: r-genefilter: Update to 1.82.1. 
* gnu/packages/bioconductor.scm (r-genefilter): Update to 1.82.1.
 2023-05-09 15:24:14 +02:00
Ricardo Wurmus
56524dc465
gnu: r-edger: Update to 3.42.2. 
* gnu/packages/bioconductor.scm (r-edger): Update to 3.42.2.
 2023-05-09 15:24:14 +02:00
Ricardo Wurmus
d9d920403a
gnu: r-deseq2: Update to 1.40.1. 
* gnu/packages/bioconductor.scm (r-deseq2): Update to 1.40.1.
 2023-05-09 15:24:14 +02:00
Ricardo Wurmus
7a9e68f103
gnu: r-biocparallel: Update to 1.34.1. 
* gnu/packages/bioconductor.scm (r-biocparallel): Update to 1.34.1.
 2023-05-09 15:24:14 +02:00
Ricardo Wurmus
69e954bb0a
gnu: r-annotationdbi: Update to 1.62.1. 
* gnu/packages/bioconductor.scm (r-annotationdbi): Update to 1.62.1.
 2023-05-09 15:24:14 +02:00
Ricardo Wurmus
931ac0735f
gnu: r-densvis: Update to 1.10.1. 
* gnu/packages/bioconductor.scm (r-densvis): Update to 1.10.1.
 2023-05-09 15:24:14 +02:00
Ricardo Wurmus
06b903963c
gnu: r-delayedarray: Update to 0.26.2. 
* gnu/packages/bioconductor.scm (r-delayedarray): Update to 0.26.2.
[propagated-inputs]: Add r-s4arrays.
 2023-05-09 15:24:14 +02:00
Ricardo Wurmus
01faf51999
gnu: r-bandits: Update to 1.16.1. 
* gnu/packages/bioconductor.scm (r-bandits): Update to 1.16.1.
 2023-05-09 15:24:14 +02:00
Ricardo Wurmus
13dde61328
gnu: r-bambu: Update to 3.2.2. 
* gnu/packages/bioconductor.scm (r-bambu): Update to 3.2.2.
 2023-05-09 15:24:14 +02:00
Ricardo Wurmus
6401f048cf
gnu: r-amplican: Update to 1.22.1. 
* gnu/packages/bioconductor.scm (r-amplican): Update to 1.22.1.
[propagated-inputs]: Remove r-clustercrit; add r-cluster.
 2023-05-09 15:24:14 +02:00
Ricardo Wurmus
0861bca905
gnu: r-affyplm: Update to 1.76.1. 
* gnu/packages/bioconductor.scm (r-affyplm): Update to 1.76.1.
 2023-05-09 15:24:14 +02:00
Ricardo Wurmus
7a58dc01d3
gnu: Add r-s4arrays. 
* gnu/packages/bioconductor.scm (r-s4arrays): New variable.
 2023-05-09 15:24:14 +02:00
Ricardo Wurmus
e2c47544a5
gnu: r-deoptimr: Update to 1.0-13. 
* gnu/packages/statistics.scm (r-deoptimr): Update to 1.0-13.
 2023-05-09 15:24:14 +02:00
Ricardo Wurmus
4141309fcd
gnu: r-gdata: Update to 2.19.0. 
* gnu/packages/statistics.scm (r-gdata): Update to 2.19.0.
 2023-05-09 15:24:14 +02:00
Ricardo Wurmus
9c2d020eee
gnu: r-hmisc: Update to 5.1-0. 
* gnu/packages/statistics.scm (r-hmisc): Update to 5.1-0.
 2023-05-09 15:24:14 +02:00
Ricardo Wurmus
0aa29c87b6
gnu: r-viridislite: Update to 0.4.2. 
* gnu/packages/statistics.scm (r-viridislite): Update to 0.4.2.
 2023-05-09 15:24:14 +02:00
Ricardo Wurmus
053685b5de
gnu: r-viridis: Update to 0.6.3. 
* gnu/packages/statistics.scm (r-viridis): Update to 0.6.3.
 2023-05-09 15:24:14 +02:00
Ricardo Wurmus
9a3a4cc88b
gnu: r-pkgmaker: Update to 0.32.10. 
* gnu/packages/statistics.scm (r-pkgmaker): Update to 0.32.10.
 2023-05-09 15:24:14 +02:00
Ricardo Wurmus
89b4d2de5b
gnu: r-httr: Update to 1.4.6. 
* gnu/packages/statistics.scm (r-httr): Update to 1.4.6.
 2023-05-09 15:24:14 +02:00
Ricardo Wurmus
7362200a9e
gnu: r-chron: Update to 2.3-61. 
* gnu/packages/statistics.scm (r-chron): Update to 2.3-61.
 2023-05-09 15:24:14 +02:00
Ricardo Wurmus
2872088e42
gnu: r-testthat: Update to 3.1.8. 
* gnu/packages/statistics.scm (r-testthat): Update to 3.1.8.
 2023-05-09 15:24:14 +02:00
Ricardo Wurmus
ba8f4abace
gnu: r-evaluate: Update to 0.21. 
* gnu/packages/statistics.scm (r-evaluate): Update to 0.21.
 2023-05-09 15:24:14 +02:00
Ricardo Wurmus
87fa92288c
gnu: r-nnet: Update to 7.3-19. 
* gnu/packages/statistics.scm (r-nnet): Update to 7.3-19.
 2023-05-09 15:24:14 +02:00
Ricardo Wurmus
291b84b8c6
gnu: r-kernsmooth: Update to 2.23-21. 
* gnu/packages/statistics.scm (r-kernsmooth): Update to 2.23-21.
 2023-05-09 15:24:14 +02:00
Ricardo Wurmus
4f67571782
gnu: r-class: Update to 7.3-22. 
* gnu/packages/statistics.scm (r-class): Update to 7.3-22.
 2023-05-09 15:24:14 +02:00
Ricardo Wurmus
7b2e40a43b
gnu: r-mass: Update to 7.3-60. 
* gnu/packages/statistics.scm (r-mass): Update to 7.3-60.
 2023-05-09 15:24:14 +02:00
Ricardo Wurmus
b984ab470f
gnu: r-misctools: Update to 0.6-28. 
* gnu/packages/cran.scm (r-misctools): Update to 0.6-28.
 2023-05-09 15:24:14 +02:00
Ricardo Wurmus
f9a080f944
gnu: r-fauxpas: Update to 0.5.2. 
* gnu/packages/cran.scm (r-fauxpas): Update to 0.5.2.
 2023-05-09 15:24:14 +02:00
Ricardo Wurmus
5629f02d2a
gnu: r-mlr3: Update to 0.16.0. 
* gnu/packages/cran.scm (r-mlr3): Update to 0.16.0.
 2023-05-09 15:24:13 +02:00
Ricardo Wurmus
dc2e79ab9b
gnu: r-diversitree: Update to 0.9-18. 
* gnu/packages/cran.scm (r-diversitree): Update to 0.9-18.
 2023-05-09 15:24:13 +02:00
Ricardo Wurmus
316fe63df6
gnu: r-scattermore: Update to 1.0. 
* gnu/packages/cran.scm (r-scattermore): Update to 1.0.
[native-inputs]: Add r-knitr.
 2023-05-09 15:24:13 +02:00
Ricardo Wurmus
21a2f9dd2d
gnu: r-metafor: Update to 4.2-0. 
* gnu/packages/cran.scm (r-metafor): Update to 4.2-0.
 2023-05-09 15:24:13 +02:00
Ricardo Wurmus
b94e90a0bd
gnu: r-tidymodels: Update to 1.1.0. 
* gnu/packages/cran.scm (r-tidymodels): Update to 1.1.0.
 2023-05-09 15:24:13 +02:00
Ricardo Wurmus
ba846805ae
gnu: r-influencer: Update to 0.1.0.2. 
* gnu/packages/cran.scm (r-influencer): Update to 0.1.0.2.
 2023-05-09 15:24:13 +02:00
Ricardo Wurmus
674e393fe3
gnu: r-adabag: Update to 4.3. 
* gnu/packages/cran.scm (r-adabag): Update to 4.3.
 2023-05-09 15:24:13 +02:00
Ricardo Wurmus
74a85c46f5
gnu: r-showtext: Update to 0.9-6. 
* gnu/packages/cran.scm (r-showtext): Update to 0.9-6.
[native-inputs]: Add r-rmarkdown.
 2023-05-09 15:24:13 +02:00
Ricardo Wurmus
f0509acf25
gnu: r-graphlayouts: Update to 1.0.0. 
* gnu/packages/cran.scm (r-graphlayouts): Update to 1.0.0.
[native-inputs]: Add r-knitr.
 2023-05-09 15:24:13 +02:00
Ricardo Wurmus
c4b04d28d0
gnu: r-mlbench: Update to 2.1-3.1. 
* gnu/packages/cran.scm (r-mlbench): Update to 2.1-3.1.
 2023-05-09 15:24:13 +02:00
Ricardo Wurmus
2f365ed64d
gnu: r-rms: Update to 6.7-0. 
* gnu/packages/cran.scm (r-rms): Update to 6.7-0.
[propagated-inputs]: Remove r-kableextra.
 2023-05-09 15:24:13 +02:00
Ricardo Wurmus
d9d20fc2fa
gnu: r-wk: Update to 0.7.3. 
* gnu/packages/cran.scm (r-wk): Update to 0.7.3.
 2023-05-09 15:24:13 +02:00
Ricardo Wurmus
9e52a4c23e
gnu: r-speedglm: Update to 0.3-5. 
* gnu/packages/cran.scm (r-speedglm): Update to 0.3-5.
[propagated-inputs]: Add r-biglm.
 2023-05-09 15:24:13 +02:00
Ricardo Wurmus
758a371f6f
gnu: r-ggeffects: Update to 1.2.2. 
* gnu/packages/cran.scm (r-ggeffects): Update to 1.2.2.
 2023-05-09 15:24:13 +02:00
Ricardo Wurmus
0933e43de8
gnu: r-tarchetypes: Update to 0.7.6. 
* gnu/packages/cran.scm (r-tarchetypes): Update to 0.7.6.
 2023-05-09 15:24:13 +02:00
Ricardo Wurmus
26fdde288d
gnu: r-survey: Update to 4.2-1. 
* gnu/packages/cran.scm (r-survey): Update to 4.2-1.
 2023-05-09 15:24:13 +02:00
Ricardo Wurmus
552ed0dacf
gnu: r-later: Update to 1.3.1. 
* gnu/packages/cran.scm (r-later): Update to 1.3.1.
 2023-05-09 15:24:13 +02:00
Ricardo Wurmus
d3c05279a8
gnu: r-tseries: Update to 0.10-54. 
* gnu/packages/cran.scm (r-tseries): Update to 0.10-54.
[propagated-inputs]: Add r-jsonlite.
 2023-05-09 15:24:13 +02:00
Ricardo Wurmus
efd0365a8f
gnu: r-scatterplot3d: Update to 0.3-44. 
* gnu/packages/cran.scm (r-scatterplot3d): Update to 0.3-44.
 2023-05-09 15:24:13 +02:00
Ricardo Wurmus
eb70932061
gnu: r-ctrdata: Update to 1.13.1. 
* gnu/packages/cran.scm (r-ctrdata): Update to 1.13.1.
 2023-05-09 15:24:13 +02:00
Ricardo Wurmus
85df1d3fc5
gnu: r-sass: Update to 0.4.6. 
* gnu/packages/cran.scm (r-sass): Update to 0.4.6.
 2023-05-09 15:24:13 +02:00
Ricardo Wurmus
c50403d0ab
gnu: r-servr: Update to 0.27. 
* gnu/packages/cran.scm (r-servr): Update to 0.27.
 2023-05-09 15:24:13 +02:00
Ricardo Wurmus
2ea5346a00
gnu: r-httpuv: Update to 1.6.10. 
* gnu/packages/cran.scm (r-httpuv): Update to 1.6.10.
 2023-05-09 15:24:13 +02:00
Ricardo Wurmus
263f3e1ac2
gnu: r-waldo: Update to 0.5.0. 
* gnu/packages/cran.scm (r-waldo): Update to 0.5.0.
 2023-05-09 15:24:13 +02:00
Ricardo Wurmus
3751313f5b
gnu: r-cachem: Update to 1.0.8. 
* gnu/packages/cran.scm (r-cachem): Update to 1.0.8.
 2023-05-09 15:24:13 +02:00
Ricardo Wurmus
6aa299aa1c
gnu: r-ggpicrust2: Update to 1.6.3. 
* gnu/packages/bioconductor.scm (r-ggpicrust2): Update to 1.6.3.
 2023-05-09 15:24:13 +02:00
Ricardo Wurmus
bd3ef47877
gnu: r-biomartr: Update to 1.0.3. 
* gnu/packages/bioconductor.scm (r-biomartr): Update to 1.0.3.
 2023-05-09 15:24:13 +02:00
Ricardo Wurmus
7668d7f16b
gnu: r-profvis: Update to 0.3.8. 
* gnu/packages/cran.scm (r-profvis): Update to 0.3.8.
[propagated-inputs]: Add r-purrr, r-rlang, and r-vctrs.
 2023-05-09 15:24:13 +02:00
Ricardo Wurmus
ab140eb2f8
gnu: r-arrow: Update to 12.0.0. 
* gnu/packages/cran.scm (r-arrow): Update to 12.0.0.
 2023-05-09 15:24:12 +02:00
Ricardo Wurmus
1dac05b225
gnu: apache-arrow: Update to 12.0.0. 
* gnu/packages/databases.scm (apache-arrow): Update to 12.0.0.
 2023-05-09 15:24:12 +02:00
Ricardo Wurmus
7a4456b047
gnu: apache-arrow: Drop package labels. 
* gnu/packages/databases.scm (apache-arrow)[inputs]: Drop labels.
 2023-05-09 15:24:12 +02:00
Ricardo Wurmus
a0fe6bec4b
gnu: apache-arrow: Use G-expressions. 
* gnu/packages/databases.scm (apache-arrow)[arguments]: Use G-expressions to
refer to inputs without assoc-ref.
 2023-05-09 15:24:12 +02:00
Tanguy Le Carrour
76a3deb867
gnu: python-leather: Update to 0.3.4. 
* gnu/packages/wireservice.scm (python-leather): Update to 0.3.4.

Signed-off-by: Guillaume Le Vaillant <glv@posteo.net>
 2023-05-09 14:20:11 +02:00
Guillaume Le Vaillant
f5a2c6c2ab
gnu: txr: Update to 286. 
* gnu/packages/lisp.scm (txr): Update to 286.
 2023-05-09 14:15:23 +02:00
Pierre Neidhardt
5aae6c99c2
gnu: Update sbcl-nclasses to 0.5.0. 
* gnu/packages/lisp-xyz.scm (sbcl-nclasses): Update to 0.5.0.

Signed-off-by: Pierre Neidhardt <mail@ambrevar.xyz>
 2023-05-09 13:33:32 +02:00
Efraim Flashner
649ce7b433
Merge branch 'rust-team' 2023-05-09 09:56:33 +03:00
Efraim Flashner
c56d57110d
gnu: rust-bootstrap: Remove aarch64 as a supported architecture. 
This is so that we can merge the branch, building rust for aarch64-linux
on CI is very time intensive.

* gnu/packages/rust.scm (rust-bootstrap)[supported-systems]: Remove
aarch64-linux.
 2023-05-09 09:54:37 +03:00
Efraim Flashner
1bb29cd49c
gnu: gcc: Update cpu tuning architectures. 
* gnu/packages/gcc.scm (%gcc-7.5-armhf-micro-architectures): Add missing
micro-architecture.
(%gcc-10-armhf-micro-architectures): Adjust accordingly.
(%gcc-11-aarch64-micro-architectures): Add missing micro-architecture.
(%gcc-12-aarch64-micro-architectures, %gcc-12-armhf-micro-architectures,
%gcc-12-x86_64-micro-architectures, %gcc-13-aarch64-micro-architectures,
%gcc-13-armhf-micro-architectures, %gcc-13-x86_64-micro-architectures):
New variables.
(gcc-12)[properties]: Use new compiler-cpu-architectures.
* guix/cpu.scm (cpu->gcc-architecture): Update entries for Intel, AMD,
x86_64 fallback and aarch64.
 2023-05-09 09:52:24 +03:00
Efraim Flashner
23d4ebdaac
gnu: gcc-12: Update to 12.3.0. 
* gnu/packages/gcc.scm (gcc-12): Update to 12.3.0.
 2023-05-09 08:39:19 +03:00
Efraim Flashner
cdba1d8e2e
gnu: gimp: Build with librsvg-for-system. 
* gnu/packages/gimp.scm (gimp)[inputs]: Replace librsvg with
librsvg-for-system.
 2023-05-09 08:23:05 +03:00
Efraim Flashner
3d6f7a45d9
gnu: gegl: Build with librsvg-for-system. 
* gnu/packages/gimp.scm (gegl)[inputs]: Replace librsvg with
librsvg-for-system.
 2023-05-09 08:23:01 +03:00
Jelle Licht
50249cab3a
gnu: foot: Add search path for 'TERMINFO_DIRS'. 
* gnu/packages/terminals.scm (foot)[native-search-paths]: New field.
 2023-05-08 22:28:47 +02:00
Benjamin
5f024ef3af
gnu: foot: Update to 1.14.0. 
* gnu/packages/terminals.scm (foot): Update to 1.14.0.

Signed-off-by: Jelle Licht <jlicht@fsfe.org>
 2023-05-08 22:28:13 +02:00
Benjamin
2b99492f5d
gnu: tllist: Update to 1.1.0. 
* gnu/packages/datastructures.scm (tllist): Update to 1.1.0.

Signed-off-by: Jelle Licht <jlicht@fsfe.org>
 2023-05-08 22:28:13 +02:00
Nicolas Goaziou
28c2c570f8
gnu: emacs-tmr: Fix ffplay invocation. 
This fixes <https://issues.guix.gnu.org/63350>.

* gnu/packages/emacs-xyz.scm (emacs-tmr)[arguments]<#:phases>: Fix search
string.
 2023-05-08 19:21:58 +02:00
Simon Josefsson
26897e3c41
gnu: Add emacs-eweouz. 
* gnu/packages/emacs-xyz.scm (emacs-eweouz): New variable.

Signed-off-by: Nicolas Goaziou <mail@nicolasgoaziou.fr>
 2023-05-08 19:21:46 +02:00
David Thompson
56774726dc
gnu: guile-goblins: Update to 0.11.0. 
* gnu/packages/guile-xyz.scm (guile-goblins): Update to 0.11.0.
 2023-05-08 13:09:28 -04:00
Ricardo Wurmus
e9f19cfa35
gnu: guile-openai: Update to 0.1-2.9265b64. 
* gnu/packages/guile-xyz.scm (guile-openai): Update to 0.1-2.9265b64.
 2023-05-08 18:53:30 +02:00
Ricardo Wurmus
42e9e8ba2e
gnu: Add homer. 
* gnu/packages/bioinformatics.scm (homer): New variable.
 2023-05-08 18:50:38 +02:00
Efraim Flashner
e15d2655cb
gnu: python-bleach: Don't vendor python-html5lib. 
* gnu/packages/python-xyz.scm (python-bleach)[source]: Add snippet to
remove vendored library and references to it.
[propagated-inputs]: Add python-html5lib.
 2023-05-08 15:45:44 +03:00