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4841 Commits

Author SHA1 Message Date
Andreas Enge
c80259b313 gnu: libetonyek: Update to 0.1.3. 
* gnu/packages/libreoffice.scm (libetonyek): Update to 0.1.3.
  [native-inputs]: Add glm and mdds.
 2015-07-09 09:21:50 +02:00
Andreas Enge
694bbb4da6 gnu: mdds: Update to 0.12.1. 
* gnu/packages/boost.scm (mdds): Update to 0.12.1.
 2015-07-09 09:21:50 +02:00
Mark H Weaver
7b21252632 gnu: Add grilo-plugins. 
* gnu/packages/gnome.scm (grilo-plugins): New variable.
 2015-07-09 02:18:55 -04:00
Mark H Weaver
8d4791bfe8 gnu: Add grilo. 
* gnu/packages/gnome.scm (grilo): New variable.
 2015-07-09 02:18:55 -04:00
Mark H Weaver
9fb00f383d gnu: wpa-supplicant: Fix WPS and P2P NFC NDEF record payload length validation. 
* gnu/packages/patches/wpa-supplicant-2015-5-fix.patch: New file.
* gnu-system.am (dist_patch_DATA): Add it.
* gnu/packages/admin.scm (wpa-supplicant-light)[source]: Add patch.
 2015-07-08 18:27:37 -04:00
Andreas Enge
16de69c950 gnu: boost: Update to 1.58.0. 
* gnu/packages/boost.scm (boost): Update to 1.58.0.
 2015-07-08 23:18:40 +02:00
Ricardo Wurmus
56e373ef75 gnu: Add preseq. 
* gnu/packages/bioinformatics.scm (preseq): New variable.
* gnu/packages/patches/preseq-1.0.2-install-to-PREFIX.patch: New file.
* gnu/packages/patches/preseq-1.0.2-link-with-libbam.patch: New file.
* gnu-system.am (dist_patch_DATA): Add them.
 2015-07-08 17:05:00 +02:00
Ricardo Wurmus
5bdda30b32 gnu: samtools: Install headers. 
* gnu/packages/bioinformatics.scm (samtools)[arguments]: Add phase
  "install-headers" to install header files.
 2015-07-08 17:05:00 +02:00
Federico Beffa
85ef742c25 gnu: Add emacs-mmm-mode. 
* gnu/packages/emacs.scm (emacs-mmm-mode): New variable.
 2015-07-08 10:53:05 +02:00
Federico Beffa
7839533458 gnu: Add emacs-auctex. 
* gnu/packages/emacs.scm: New variable.
 2015-07-08 10:53:05 +02:00
David Thompson
575b4b092d gnu: system: Move file-system->spec to (gnu system file-systems). 
* gnu/system/linux-initrd.scm (file-system->spec): Move this...
* gnu/system/file-systems.scm: ... to here.
 2015-07-07 21:20:59 -04:00
David Thompson
9110c2e942 gnu: system: Move <file-system-mapping> into (gnu system file-systems). 
* gnu/system/vm.scm (<file-system-mapping>, %store-mapping): Move from here...
* gnu/system/file-systems.scm: ...to here.
* guix/scripts/system.scm: Import (gnu system file-systems).
 2015-07-07 21:20:59 -04:00
Cyril Roelandt
0e88cbf8c1 gnu: python-testtools: make python-mimeparse a propagated input 
* gnu/packages/python.scm (python-testtools): move python-mimeparse from inputs
  to propagated-inputs.
 2015-07-08 02:28:51 +02:00
Mark H Weaver
d7facc6603 gnu: cups-filters: Update to 1.0.71. 
* gnu/packages/cups.scm (cups-filters): Update to 1.0.71.
 2015-07-07 16:47:48 -04:00
Mark H Weaver
b1982b80ca gnu: zathura-{cb,ps,djvu,pdf-poppler}: Fix installation of desktop files. 
Based on a patch by Alex Kost <alezost@gmail.com>.

* gnu/packages/pdf.scm (zathura-cb, zathura-ps, zathura-djvu)
  (zathura-pdf-poppler)[arguments]: In make-flags, set PREFIX instead of
  DESTDIR and adjust PLUGINDIR accordingly.
 2015-07-07 15:58:35 -04:00
Mark H Weaver
734976b681 gnu: libdvdnav: Update to 5.0.3. 
* gnu/packages/video.scm (libdvdnav): Update to 5.0.3.
 2015-07-07 14:48:09 -04:00
Mark H Weaver
9aebf3301a gnu: libdvdread: Update to 5.0.3. 
* gnu/packages/video.scm (libdvdread): Update to 5.0.3.
 2015-07-07 14:48:09 -04:00
Alex Kost
c05c43216f system: Fix typo. 
* gnu/system.scm (etc-directory): Fix typo in a comment.
 2015-07-07 21:28:53 +03:00
Mark H Weaver
e088410984 gnu: Add libmpeg2. 
* gnu/packages/video.scm (libmpeg2): New variable.
 2015-07-07 13:09:36 -04:00
Mark H Weaver
23da88f61e gnu: liba52: Build shared library. 
* gnu/packages/patches/liba52-enable-pic.patch,
  gnu/packages/patches/liba52-link-with-libm.patch,
  gnu/packages/patches/liba52-set-soname.patch,
  gnu/packages/patches/liba52-use-mtune-not-mcpu.patch: New files.
* gnu-system.am (dist_patch_DATA): Add them.
* gnu/packages/video.scm (liba52)[source]: Add patches.
  [native-inputs]: Add autoconf, automake, and libtool.
  [arguments]: Add "--enable-shared" to configure-flags.
  Add 'bootstrap' phase.
 2015-07-07 10:52:04 -04:00
David Thompson
4ca5c91f65 gnu: ruby: Remove custom 'rake gem' build phase from all gems. 
* gnu/packages/ruby.scm (ruby-hoe, ruby-rake-compiler,
  ruby-net-http-persistent, ruby-minitest, ruby-minitest-sprint,
  ruby-minitest-bacon): Remove custom 'rake gem' build phase that is now
  handled automatically by the Ruby build system.
 2015-07-07 08:54:29 -04:00
Ricardo Wurmus
795c01f31d gnu: samtools: Update to 1.2. 
* gnu/packages/bioinformatics.scm (samtools): Update to 1.2.
 2015-07-07 14:43:07 +02:00
Andreas Enge
66b2b085ce gnu: pari-gp: Update to 2.7.4. 
* gnu/packages/algebra.scm (pari-gp): Update to 2.7.4.
 2015-07-07 13:19:09 +02:00
Mark H Weaver
48cfe294b0 gnu: icecat: Apply more libvpx-1.4 fixes. 
This is a followup to commit c803ffcb3a.

* gnu/packages/patches/icecat-libvpx-1.4.patch: Augment existing patch to
  include fixes for content/media/encoder/VP8TrackEncoder.cpp.
 2015-07-07 02:59:59 -04:00
Mark H Weaver
c803ffcb3a gnu: icecat: Fix build against libvpx 1.4. 
* gnu/packages/patches/icecat-libvpx-1.4.patch: New file.
* gnu-system.am (dist_patch_DATA): Add it.
* gnu/packages/gnuzilla.scm (icecat)[source]: Add patch.
 2015-07-06 23:01:56 -04:00
Mark H Weaver
0ba652b2f5 gnu: gst-plugins-good: Disable rtprtx tests that frequently fail. 
* gnu/packages/gstreamer.scm (arguments): Add 'disable-failing-rtprtx-tests'
  phase.
 2015-07-06 21:36:33 -04:00
Mark H Weaver
723e886656 gnu: libvpx: Update to 1.4.0. 
* gnu/packages/patches/libvpx-fix-armhf-link.patch,
  gnu/packages/patches/libvpx-fix-ssse3-quantize.patch,
  gnu/packages/patches/libvpx-vp9-out-of-bounds-access.patch: Remove files.
* gnu-system.am (dist_patch_DATA): Remove them.
* gnu/packages/video.scm (libvpx): Update to 1.4.0.  Remove patches.  Update
  source URI.
 2015-07-06 21:17:05 -04:00
Mark H Weaver
9ed5486439 gnu: libwmf: Fix CVE-2006-3376, CVE-2009-1364, CVE-2015-{0848,4588,4695,4696}. 
* gnu/packages/patches/libwmf-CVE-2006-3376.patch,
  gnu/packages/patches/libwmf-CVE-2009-1364.patch,
  gnu/packages/patches/libwmf-CVE-2015-0848+4588+4695+4696.patch: New files.
* gnu-system.am (dist_patch_DATA): Add them.
* gnu/packages/image.scm (libwmf)[source]: Add patches.
 2015-07-06 20:04:50 -04:00
Andreas Enge
f2820e0763 gnu: libreoffice: Update to 4.4.4.3. 
* gnu/packages/libreoffice.scm (libreoffice): Update to 4.4.4.3.
 2015-07-06 08:26:42 +02:00
Ludovic Courtès
1109ddcd54 gnu: freeipmi: Update to 1.4.9. 
* gnu/packages/freeipmi.scm (freeipmi): Update to 1.4.9.
 2015-07-06 00:47:09 +02:00
Ludovic Courtès
6cb2533b1e gnu: gcal: Update to 4. 
* gnu/packages/gcal.scm (gcal): Update to 4.
 2015-07-06 00:47:09 +02:00
Ludovic Courtès
0bd6f138d9 gnu: gxmessage: Update to 3.4.3. 
* gnu/packages/gxmessage.scm (gxmessage): Update to 3.4.3.
  [inputs]: Use GTK+ instead of GTK+-2.
 2015-07-06 00:47:09 +02:00
Ludovic Courtès
af87a551bc gnu: guile-sdl: Update to 0.5.2. 
* gnu/packages/sdl.scm (guile-sdl): Update to 0.5.2.
  [arguments]: Augment 'fix-env-and-path' phase to modify 'test/Makefile.in'.
 2015-07-06 00:47:09 +02:00
Ricardo Wurmus
d19cf78357 gnu: powertabeditor: Update to 2.0.0-alpha8. 
* gnu/packages/music.scm (powertabeditor): Update to 2.0.0-alpha8.
 2015-07-05 20:57:04 +02:00
Ricardo Wurmus
7e11d11355 gnu: powertabeditor: Enable tests. 
* gnu/packages/music.scm (powertabeditor)[arguments]: Run "pte_tests" in
  "check" phase; add phase "fix-tests".
 2015-07-05 20:57:04 +02:00
Andreas Enge
cb6a802c01 gnu: Add LibreSSL. 
* gnu/packages/tls.scm (libressl): New variable.
 2015-07-05 19:03:34 +02:00
Andreas Enge
e9aa8d0ccb gnu: Fix ambiguity between openssl package and license in tls module. 
* gnu/packages/tls.scm: Prefix imported licenses.
 2015-07-05 19:03:34 +02:00
Mark H Weaver
90e1cdae0c gnu: icecat: Add support for WebGL, CUPS, Hunspell, startup-notification, etc. 
Also remove most bundled libraries from the source, add comments about
libraries yet to be unbundled, explicitly link libxul.so with libraries that
might try (and fail) to dlopen, and remove the h264parse gstreamer module from
the blacklist.

* gnu/packages/gnuzilla.scm (icecat)[source]: Add snippet.
  [inputs]: Add cups, gdk-pixbuf, glib, hunspell, libcanberra, libgnome,
  libxinerama, libxscrnsaver, mit-krb5, and startup-notification.
  [arguments]<#:configure-flags>: add "--enable-default-toolkit=cairo-gtk2",
  "--enable-pango", "--enable-gio", "--enable-svg", "--enable-canvas",
  "--enable-mathml", "--enable-startup-notification", "--disable-gnomevfs",
  "--disable-gconf", "--disable-gnomeui", and "--enable-system-hunspell".
  Remove outdated comment about "--with-system-bz2" not being used.
  <#:phases>: Use 'modify-phases'.  Add 'remove-h264parse-from-blacklist'
  and 'arrange-to-link-libxul-with-libraries-it-might-dlopen' phases.
 2015-07-05 12:58:56 -04:00
Andreas Enge
cc2b77dfc7 gnu: Move content of openssl module into tls module. 
* gnu/packages/openssl.scm (openssl, perl-net-ssleay): Move to...
* gnu/packages/tls.scm: ...here.
* gnu/packages/openssl.scm: Delete file.
* gnu-system.am (GNU_SYSTEM_MODULES): Unregister deleted file.
* gnu/packages/{admin.scm, bittorrent.scm, certs.scm, ci.scm,
  cyrus-sasl.scm, databases.scm, dns.scm, ebook.scm, enlightenment.scm,
  gnunet.scm, libreoffice.scm, links.scm, mail.scm, messaging.scm,
  networking.scm, ntp.scm, openldap.scm, package-management.scm, pdf.scm,
  python.scm, qt.scm, rdesktop.scm, rdf.scm, ruby.scm, ssh.scm,
  synergy.scm, tor.scm, version-control.scm, video.scm, vpn.scm,
  w3m.scm, web.scm, weechat.scm, xiph.scm}: Adapt module import.
 2015-07-05 18:27:24 +02:00
Andreas Enge
a7fd7b68a6 gnu: Rename module gnutls to tls. 
* gnu/packages/gnutls.scm: Rename to...
* gnu/packages/tls.scm: ... this.  Change module name accordingly.
* gnu/packages/{admin.scm, cups.scm, curl.scm, dc.scm, dns.scm, emacs.scm,
  ftp.scm, gnome.scm, gnunet.scm, gnupg.scm, gsasl.scm, lynx.scm,
  mail.scm, messaging.scm, package-management.scm, shishi.scm,
  task-management.scm, version-control.scm, video.scm, vpn.scm,
  webkit.scm, weechat.scm, wget.scm, wine.scm, xml.scm}: Adapt module
  import to new name.
* gnu-system.am (GNU_SYSTEM_MODULES): Rename gnutls module to tls.
 2015-07-05 17:09:42 +02:00
Andreas Enge
a351c7c157 gnu: avidemux: Drop version 2.5. 
* gnu/packages/video.scm (avidemux-2.5): Delete variable.
 2015-07-05 12:23:12 +02:00
Ben Woodcroft
af86047537 gnu: Add prodigal. 
* gnu/packages/bioinformatics.scm (prodigal): New variable.
 2015-07-05 02:56:53 -04:00
Ricardo Wurmus
151714ca8c gnu: shogun: Build with install RPATH. 
* gnu/packages/bioinformatics.scm (shogun)[arguments]: Add configure flag to
  build with install RPATH.
 2015-07-04 17:55:30 +02:00
Ludovic Courtès
e4fef9df27 gnu: englightenment: Use https URLs. 
* gnu/packages/enlightenment.scm (efl, elementary, emotion-generic-players,
  terminology, enlightenment): Use https instead of http since the latter
  redirects to the former.
 2015-07-04 17:08:53 +02:00
Efraim Flashner
c4f8a7aacc gnu: enlightenment: Update to 0.19.5. 
* gnu/packages/enlightenment.scm (enlightenment): Update to 0.19.5.
 2015-07-04 16:50:18 +02:00
Efraim Flashner
88988b41a2 gnu: emotion-generic-loaders: Update to 1.14.0. 
* gnu/packages/enlightenment.scm (emotion-generic-loaders): Update
  to 1.14.0.
 2015-07-04 16:49:42 +02:00
Efraim Flashner
7b09969b2e gnu: evas-generic-loaders: Update to 1.14.0. 
* gnu/packages/enlightenment.scm (evas-generic-loaders): Update
  to 1.14.0.
 2015-07-04 16:49:07 +02:00
Efraim Flashner
0179686d13 gnu: elementary: Update to 1.14.2. 
* gnu/packages/enlightenment.scm (elementary): Update to 1.14.2.
 2015-07-04 16:48:26 +02:00
Efraim Flashner
7e22d6fee9 gnu: efl: Update to 1.14.2. 
* gnu/packages/enlightenment.scm (efl): Update to 1.14.2.
 2015-07-04 16:47:42 +02:00
pjotrp
022170dca1 gnu: Add ruby-rake-compiler. 
* gnu/packages/ruby.scm (ruby-rake-compiler): New variable.
 2015-07-04 09:47:33 -04:00
Ricardo Wurmus
80e907fe57 gnu: eigen: Update to 3.2.5. 
* gnu/packages/algebra.scm (eigen): Update to 3.2.5.
 2015-07-04 13:32:52 +02:00
Mark H Weaver
4463c0d216 gnu: icecat: Fix CVE-2015-{2722,2724,2728,2733,2735,2736,2738,2739,2740,2743}. 
* gnu/packages/patches/icecat-CVE-2015-2722-pt1.patch,
  gnu/packages/patches/icecat-CVE-2015-2722-pt2.patch,
  gnu/packages/patches/icecat-CVE-2015-2724-pt1.patch,
  gnu/packages/patches/icecat-CVE-2015-2724-pt2.patch,
  gnu/packages/patches/icecat-CVE-2015-2724-pt3.patch,
  gnu/packages/patches/icecat-CVE-2015-2724-pt4.patch,
  gnu/packages/patches/icecat-CVE-2015-2728-pt1.patch,
  gnu/packages/patches/icecat-CVE-2015-2728-pt2.patch,
  gnu/packages/patches/icecat-CVE-2015-2733-pt1.patch,
  gnu/packages/patches/icecat-CVE-2015-2733-pt2.patch,
  gnu/packages/patches/icecat-CVE-2015-2735.patch,
  gnu/packages/patches/icecat-CVE-2015-2736.patch,
  gnu/packages/patches/icecat-CVE-2015-2738.patch,
  gnu/packages/patches/icecat-CVE-2015-2739.patch,
  gnu/packages/patches/icecat-CVE-2015-2740.patch,
  gnu/packages/patches/icecat-CVE-2015-2743.patch: New files.
* gnu-system.am (dist_patch_DATA): Add them.
* gnu/packages/gnuzilla.scm (icecat)[source]: Add patches.
 2015-07-04 05:44:10 -04:00
Andreas Enge
257b6c4375 gnu: unrtf: Fix download location. 
* gnu/packages/unrtf.scm (unrtf): Fix download location.
 2015-07-03 22:54:51 +02:00
Ricardo Wurmus
b05d1c68bc gnu: r: Replace "atlas" with "openblas". 
* gnu/packages/statistics.scm (r)[inputs]: Replace "atlas" with "openblas".
 2015-07-03 18:45:14 +02:00
Ludovic Courtès
606c638016 gnu: gnutls: Move man3 pages to "doc" output. 
* gnu/packages/gnutls.scm (gnutls)[arguments]: Add #:phases.
 2015-07-03 15:28:07 +02:00
Ludovic Courtès
4b0f2ef743 gnu: qt-4: Remove reference from "out" to "doc". 
* gnu/packages/qt.scm (qt-4)[arguments]: Remove '-docdir' configure flag.
  Add 'move-doc' phase.
 2015-07-03 15:28:07 +02:00
Ludovic Courtès
ff1989a599 gnu: qt-4: Use a more standard directory layout. 
* gnu/packages/qt.scm (qt-4)[arguments]: Pass -datadir, -importdir,
  -plugindir, and -translationdir.
 2015-07-03 15:28:07 +02:00
Ludovic Courtès
cba632c4a8 gnu: qt-4: Use 'modify-phases'. 
* gnu/packages/qt.scm (qt-4)[arguments]: Use 'modify-phases' instead of
  'alist-replace'.
 2015-07-03 15:28:07 +02:00
Ludovic Courtès
ef2f51a445 gnu: cups-filter: Install backends and filters under lib/cups. 
This ensures that they are stripped during the 'strip' phase, thereby removing
references to GCC and linux-libre-headers that would otherwise be found in
debugging symbols.

* gnu/packages/cups.scm (cups-filters)[source]: Change pkgbackenddir and
  pkgfilterdir to $(PREFIX)/lib/cups/{filter,backend}.
  (cups)[arguments]: Adjust accordingly.
 2015-07-03 15:28:07 +02:00
Ludovic Courtès
6a52df505a gnu: mysql: Remove unnecessary binaries. 
This saves ~42 MiB on x86_64.

* gnu/packages/databases.scm (mysql)[arguments]: Add 'remove-extra-binaries'
  phase.
 2015-07-03 15:28:06 +02:00
Ludovic Courtès
3f289db69d gnu: mysql: Strip references and GCC and other build-time dependencies. 
* gnu/packages/databases.scm (mysql)[arguments]: Add 'strip-extra-references'
  phase.
 2015-07-03 15:28:06 +02:00
Ludovic Courtès
b5b08878b6 gnu: mutt: Don't retain reference to GCC. 
* gnu/packages/patches/mutt-store-references.patch: New file.
* gnu/packages/mail.scm (mutt)[source]: Use it.
* gnu-system.am (dist_patch_DATA): Add it.
 2015-07-03 15:28:06 +02:00
Ludovic Courtès
9161ba818d gnu: ghostscript: Add "doc" output. 
* gnu/packages/ghostscript.scm (ghostscript)[source](snippet): New field.
  [outputs]: New field.
  [arguments]: Add 'remove-doc-reference' phase.
 2015-07-03 15:28:06 +02:00
Mark H Weaver
08fa45b190 gnu: gnupg: Enable TLS support. 
* gnu/packages/gnupg.scm (gnupg)[native-inputs]: Add pkg-config.
  [inputs]: Add gnutls.
  (gnupg-2.0, gnupg-1)[native-inputs]: Override inherited value to be '().
 2015-07-02 12:35:12 -04:00
Mark H Weaver
5e5fa28e76 gnu: gnupg: Update to 2.1.6. 
* gnu/packages/gnupg.scm (gnupg): Update to 2.1.6.
 2015-07-02 12:35:12 -04:00
Ricardo Wurmus
c61fe02cc0 gnu: Add WarpedLMM. 
* gnu/packages/bioinformatics.scm (python2-warpedlmm): New variable.
 2015-07-02 11:16:46 +02:00
Ricardo Wurmus
f4f4ced8dc gnu: r: Set default pager. 
* gnu/packages/statistics.scm (r)[arguments]: Add phase "set-default-pager" to
  avoid "false" as a default pager.
 2015-07-02 10:50:55 +02:00
Ludovic Courtès
28de8d258b environment: Define 'GUIX_ENVIRONMENT'. 
* guix/scripts/environment.scm (create-environment): Define 'GUIX_ENVIRONMENT'.
* doc/guix.texi (Invoking guix environment): Document it.
* gnu/system/shadow.scm (default-skeletons): Adjust 'PS1' depending on whether
  'GUIX_ENVIRONMENT' is defined.
 2015-07-01 23:29:49 +02:00
Ricardo Wurmus
d6902798d1 gnu: powertabeditor: Replace "gcc" with "libiberty". 
* gnu/packages/music.scm (powertabeditor)[inputs]: Replace "gcc" with
  "libiberty".
 2015-07-01 21:52:08 +02:00
Ricardo Wurmus
d231bb3575 gnu: Add Hydrogen. 
* gnu/packages/music.scm (hydrogen): New variable.
 2015-07-01 21:52:08 +02:00
Mark H Weaver
5135aed92b gnu: linux-libre: Update to 4.1.1. 
* gnu/packages/linux.scm (linux-libre): Update to 4.1.1.
 2015-07-01 00:12:39 -04:00
Eric Bavier
58c1806908 gnu: git: Add inputs for send-email. 
* gnu/packages/version-control.scm (package-transitive-propagated-labels*)
  (package-propagated-input-refs): New procedures.
  (git)[inputs]: Add perl-authen-sasl, perl-net-smtp-ssl, and perl-io-socket-ssl.
  [outputs]: Add send-email output.
  [arguments]: Add #:modules argument with srfi-1.  In 'split phase, wrap
  git-send-email.
 2015-06-30 05:01:42 -05:00
Eric Bavier
c6ee18abb6 gnu: Add perl-authen-sasl. 
* gnu/packages/web.scm (perl-authen-sasl): New variable.
 2015-06-30 05:01:42 -05:00
Eric Bavier
9fe938c19f gnu: Add perl-gssapi. 
* gnu/packages/web.scm (perl-gssapi): New variable.
 2015-06-30 05:01:42 -05:00
Eric Bavier
b1096f3dbb gnu: Add perl-net-smtp-ssl. 
* gnu/packages/web.scm (perl-net-smtp-ssl): New variable.
 2015-06-30 05:01:42 -05:00
Mark H Weaver
d2e3caba5d gnu: curl: Disable test that fails on Hydra. 
* gnu/packages/curl.scm (arguments): Disable test 1510.
 2015-06-30 00:17:00 -04:00
Mark H Weaver
4617c2e383 gnu: curl: Update to 7.43.0. 
* gnu/packages/curl.scm (curl): Update to 7.43.0.
 2015-06-30 00:17:00 -04:00
Eric Bavier
a17d45641b gnu: Add deal.II. 
* gnu/packages/maths.scm (dealii, dealii-openmpi): New variables.
* gnu/packages/patches/dealii-p4est-interface.patch: New patch.
* gnu-system.am (dist_patch_DATA): Add it.
 2015-06-29 15:34:36 -05:00
Eric Bavier
a7f0141452 gnu: Add SLEPc. 
* gnu/packages/maths.scm (slepc, slepc-complex, slepc-openmpi)
  (slepc-complex-openmpi): New variables.
 2015-06-29 15:34:36 -05:00
Eric Bavier
8c94c886f6 gnu: Add arpack-ng-openmpi. 
* gnu/packages/maths.scm (arpack-ng-openmpi): New variable.
 2015-06-29 15:34:36 -05:00
Eric Bavier
9a899cceab gnu: petsc: Upgrade to 3.6.0. 
* gnu/packages/maths.scm (petsc): Upgrade to 3.6.0.
* gnu/packages/patches/petsc-fix-threadcomm.patch: Delete patch.
* gnu-system.am (dist_patch_DATA): Remove it.
 2015-06-29 15:34:36 -05:00
Eric Bavier
cec86422b7 gnu: Add MUMPS. 
* gnu/packages/maths.scm (mumps, mumps-metis, mumps-openmpi)
  (mumps-metis-openmpi): New variables.
* gnu/packages/patches/mumps-build-parallelism.patch: New patch.
* gnu-system.am (dist_patch_DATA): Add it.
 2015-06-29 15:34:36 -05:00
Eric Bavier
aa75ad0097 gnu: Add METIS. 
* gnu/packages/maths.scm (metis): New variable.
 2015-06-29 15:34:36 -05:00
Eric Bavier
700ff22219 gnu: Add p4est. 
* gnu/packages/maths.scm (p4est, p4est-openmpi): New variables.
 2015-06-29 15:34:36 -05:00
Eric Bavier
e1ff597a64 gnu: Add ScaLAPACK. 
* gnu/packages/maths.scm (scalapack): New variable.
 2015-06-29 15:34:36 -05:00
Eric Bavier
cf0ec6c46e gnu: scotch, pt-scotch: Build esmumps libraries. 
* gnu/packages/maths.scm (scotch)[arguments]: Add 'build-esmumps
  phase.  Install esmumps libraries and headers in 'install phase.
  (pt-scotch)[arguments]: Build ptesmumps in 'build phase.  Add
  make parallelism.
 2015-06-29 15:34:36 -05:00
Eric Bavier
d6602ee9d4 gnu: scotch, pt-scotch: Use modify-phases. 
* gnu/packages/maths.scm (scotch, pt-scotch)[arguments]: Use modify-phases.
 2015-06-29 15:34:36 -05:00
Eric Bavier
6c7985408f gnu: Update scotch to 6.0.4. 
* gnu/packages/maths.scm (scotch): Update to 6.0.4.
  [arguments]: Add -fPIC to CFLAGS.
* gnu/packages/patches/scotch-test-threading.patch: Adjust patch for a
  new set of test fixes.
* gnu/packages/patches/pt-scotch-build-parallelism.patch: New patch.
* gnu-system.am (dist_patch_DATA): Add it.
 2015-06-29 15:34:36 -05:00
Eric Bavier
38f0a2bade gnu: openmpi: Upgrade to 1.8.5. 
* gnu/packages/mpi.scm (openmpi): Upgrade to 1.8.5.
  [native-inputs]: Add perl.
  [arguments]: Add configure flags for thread support.
 2015-06-29 15:34:36 -05:00
Eric Bavier
579f5c8a58 gnu: hwloc: Move numactl to inputs. 
* gnu/packages/mpi.scm (hwloc)[propagated-inputs]: Move numactl from here...
  [inputs]: ...to here.
  [arguments]: New 'refine-libnuma' phase.
 2015-06-29 15:34:36 -05:00
Eric Bavier
ce7d9c989d gnu: hwloc: Upgrade to 1.10.1. 
* gnu/packages/patches/hwloc-gather-topology-lstopo.patch: New patch.
* gnu/packages/mpi.scm (hwloc): Upgrade to 1.10.1.
  [source]: Use patch.
  [propagated-inputs]: Remove libpci.
  [inputs]: Add libpciaccess.
* gnu-system.am (dist_patch_DATA): Add patch.
 2015-06-29 15:34:36 -05:00
Eric Bavier
7362371da5 gnu: python-mccabe: Fix license field. 
* gnu/packages/python.scm (python-mccabe)[license]: 'expat' ->
  'license:expat'.
 2015-06-29 15:34:35 -05:00
Cyril Roelandt
e8df8f476e gnu: Add python-flake8. 
* gnu/packages/python.scm (python-flake8, python2-flake8): New variables.
 2015-06-30 00:07:56 +02:00
Cyril Roelandt
a59e017cb1 gnu: Add python-mccabe. 
* gnu/packages/python.scm (python-mccabe, python2-mccabe): New variables.
 2015-06-30 00:07:56 +02:00
Cyril Roelandt
e31d7f4420 gnu: Add python-pyflakes. 
* gnu/packages/python.scm (python-pyflakes, python2-pyflakes): New variables.
 2015-06-30 00:07:55 +02:00
Cyril Roelandt
d889e6c4d9 gnu: Add python-pep8. 
* gnu/packages/python.scm (python-pep8, python2-pep8): New variables.
 2015-06-30 00:07:55 +02:00
Ricardo Wurmus
2573410865 gnu: withershins: Use new "libiberty" package. 
* gnu/packages/code.scm (withershins)[inputs]: Replace "gcc" with "libiberty".
   [arguments]: Simplify "find-libiberty" phase.
 2015-06-29 21:01:13 +02:00
Ricardo Wurmus
2b6b6d13e7 gnu: Add libiberty. 
* gnu/packages/gcc.scm (make-libiberty, libiberty): New variables.
 2015-06-29 21:01:13 +02:00
Ricardo Wurmus
74e03fccd3 gnu: r: Update to 3.2.1. 
* gnu/packages/statistics.scm (r): Update to 3.2.1.
* gnu/packages/patches/r-fix-15899.patch: Remove file.
* gnu-system.am (dist_patch_DATA): Remove it.
 2015-06-29 16:13:28 +02:00
Ricardo Wurmus
82c370dea1 gnu: Add Blast+. 
* gnu/packages/bioinformatics.scm (blast+): New variable.
 2015-06-29 16:13:28 +02:00