Commit Graph

74483 Commits

Author SHA1 Message Date
Vinicius Monego
fee1a41f95
gnu: Remove python2-passlib.
* gnu/packages/python-crypto.scm (python2-passlib): Remove variable.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2021-09-30 23:44:49 +02:00
Xinglu Chen
885c46a7e5
gnu: grokmirror: Update to 2.0.11.
* gnu/packages/version-control.scm (grokmirror): Update to 2.0.11.
[arguments]<#:phases>: Don’t return #t.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2021-09-30 23:44:49 +02:00
zimoun
270b30705d
packages: Factorize and document 'computed-origin-method'.
The 'computed-origin-method' had been introduced to work around
limitations of the 'snippet' mechanism.  The procedure was duplicated,
which made it hard to automatically detect packages using it.

* guix/packages.scm (computed-origin-method): Move procedure from...
* gnu/packages/gnuzilla.scm: ...here and...
* gnu/packages/gnuzilla.scm: ...there.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2021-09-30 23:44:48 +02:00
Liliana Marie Prikler
56b10709ef
gnu: komikku: Update to 0.34.0.
* gnu/packages/gnome.scm (komikku): Update to 0.34.0.
2021-09-30 21:46:10 +02:00
Maxim Cournoyer
e2c58b9150
gnu: Add python-pytest-repeat.
* gnu/packages/python-check.scm (python-pytest-repeat): New variable.
2021-09-30 10:27:55 -04:00
Efraim Flashner
7b59508ca7
gnu: Add julia-documenter.
These four variables are added in the same commit to avoid a cyclic
dependency.

* gnu/packages/julia-xyz.scm (julia-documenter,
julia-documentermarkdown, julia-documentertools): New variables.
(julia-documenter-bootstrap): New hidden variable.
2021-09-30 14:25:48 +03:00
Efraim Flashner
647edfd0d3
gnu: Add julia-sass.
* gnu/packages/julia-xyz.scm (julia-sass): New variable.
2021-09-30 14:20:15 +03:00
Efraim Flashner
ac1166fbdb
gnu: Add julia-libsass-jll.
* gnu/packages/julia-jll.scm (julia-libsass-jll): New variable.
2021-09-30 14:20:15 +03:00
Efraim Flashner
60d3484f7c
gnu: Add julia-ansicoloredprinters.
* gnu/packages/julia-xyz.scm (julia-ansicoloredprinters): New variable.
2021-09-30 14:20:14 +03:00
Efraim Flashner
3893f13669
gnu: Add julia-pycall.
* gnu/packages/julia-xyz.scm (julia-pycall): New variable.
2021-09-30 14:20:14 +03:00
Efraim Flashner
25bb6f0822
gnu: Add julia-mlstyle.
* gnu/packages/julia-xyz.scm (julia-mlstyle): New variable.
2021-09-30 14:20:14 +03:00
Efraim Flashner
55e1fa89f1
gnu: Add julia-measurements.
* gnu/packages/julia-xyz.scm (julia-measurements): New variable.
2021-09-30 14:20:14 +03:00
Efraim Flashner
8733d2c235
gnu: Add julia-quadgk.
* gnu/packages/julia-xyz.scm (julia-quadgk): New variable.
2021-09-30 14:20:14 +03:00
Ricardo Wurmus
b28cd884b8
gnu: r-gdsfmt: Adjust bad substitution.
* gnu/packages/bioconductor.scm (r-gdsfmt)[source]: Include beginning-of-line
anchor in substitution regular expression.
2021-09-30 12:39:49 +02:00
Ricardo Wurmus
0398a89fa1
gnu: r-delayedmatrixstats: Update to 1.14.3.
* gnu/packages/bioconductor.scm (r-delayedmatrixstats): Update to 1.14.3.
2021-09-30 12:39:49 +02:00
Ricardo Wurmus
425c53b568
gnu: r-s4vectors: Update to 0.30.1.
* gnu/packages/bioconductor.scm (r-s4vectors): Update to 0.30.1.
2021-09-30 12:39:49 +02:00
Ricardo Wurmus
c935b25a9e
gnu: r-biocpkgtools: Update to 1.10.2.
* gnu/packages/bioconductor.scm (r-biocpkgtools): Update to 1.10.2.
[propagated-inputs]: Remove r-rex.
2021-09-30 12:39:49 +02:00
Ricardo Wurmus
3683f7f0a8
gnu: r-timeseriesexperiment: Update to 1.10.1.
* gnu/packages/bioconductor.scm (r-timeseriesexperiment): Update to 1.10.1.
2021-09-30 12:39:48 +02:00
Ricardo Wurmus
74e2186731
gnu: r-gdsfmt: Update to 1.28.1.
* gnu/packages/bioconductor.scm (r-gdsfmt): Update to 1.28.1.
2021-09-30 12:39:48 +02:00
Ricardo Wurmus
494b7c4eca
gnu: r-cicero: Update to 1.10.1.
* gnu/packages/bioconductor.scm (r-cicero): Update to 1.10.1.
2021-09-30 12:39:48 +02:00
Ricardo Wurmus
3278daa726
gnu: r-zinbwave: Update to 1.14.2.
* gnu/packages/bioconductor.scm (r-zinbwave): Update to 1.14.2.
2021-09-30 12:39:48 +02:00
Ricardo Wurmus
a88e7abf2f
gnu: r-clusterprofiler: Update to 4.0.5.
* gnu/packages/bioconductor.scm (r-clusterprofiler): Update to 4.0.5.
[propagated-inputs]: Remove r-rvcheck; add r-yulab-utils.
2021-09-30 12:39:48 +02:00
Ricardo Wurmus
1359fc7fbd
gnu: r-ggtree: Update to 3.0.4.
* gnu/packages/bioconductor.scm (r-ggtree): Update to 3.0.4.
[propagated-inputs]: Remove r-rvcheck; add r-ggfun and r-yulab-utils.
2021-09-30 12:39:48 +02:00
Ricardo Wurmus
538618552b
gnu: r-matrixgenerics: Update to 1.4.3.
* gnu/packages/bioconductor.scm (r-matrixgenerics): Update to 1.4.3.
2021-09-30 12:39:48 +02:00
Ricardo Wurmus
ce23a074f0
gnu: r-chippeakanno: Update to 3.26.4.
* gnu/packages/bioconductor.scm (r-chippeakanno): Update to 3.26.4.
2021-09-30 12:39:48 +02:00
Ricardo Wurmus
4fb187b79e
gnu: r-diffbind: Update to 3.2.7.
* gnu/packages/bioconductor.scm (r-diffbind): Update to 3.2.7.
2021-09-30 12:39:47 +02:00
Ricardo Wurmus
43ac163bdf
gnu: r-genomicfeatures: Update to 1.44.2.
* gnu/packages/bioconductor.scm (r-genomicfeatures): Update to 1.44.2.
2021-09-30 12:39:47 +02:00
Ricardo Wurmus
7c6046a6db
gnu: r-genomeinfodb: Update to 1.28.4.
* gnu/packages/bioconductor.scm (r-genomeinfodb): Update to 1.28.4.
2021-09-30 12:39:47 +02:00
Ricardo Wurmus
0ac7b8b6ad
gnu: r-edger: Update to 3.34.1.
* gnu/packages/bioconductor.scm (r-edger): Update to 3.34.1.
2021-09-30 12:39:47 +02:00
Ricardo Wurmus
77a5fdd51c
gnu: r-biocparallel: Update to 1.26.2.
* gnu/packages/bioconductor.scm (r-biocparallel): Update to 1.26.2.
2021-09-30 12:39:47 +02:00
Ricardo Wurmus
e8aab58d0c
gnu: r-affxparser: Update to 1.64.1.
* gnu/packages/bioconductor.scm (r-affxparser): Update to 1.64.1.
2021-09-30 12:39:47 +02:00
Ricardo Wurmus
74717852d4
gnu: r-r-filesets: Fix build by setting HOME.
* gnu/packages/cran.scm (r-r-filesets)[arguments]: Add build phase to set HOME
variable.
2021-09-30 12:39:47 +02:00
Ricardo Wurmus
655a23fa8b
gnu: r-glinternet: Update to 1.0.12.
* gnu/packages/statistics.scm (r-glinternet): Update to 1.0.12.
2021-09-30 12:39:47 +02:00
Ricardo Wurmus
1322fe25a6
gnu: r-pbapply: Update to 1.5-0.
* gnu/packages/statistics.scm (r-pbapply): Update to 1.5-0.
2021-09-30 12:39:46 +02:00
Ricardo Wurmus
8170baded5
gnu: r-rrcov: Update to 1.6-0.
* gnu/packages/statistics.scm (r-rrcov): Update to 1.6-0.
2021-09-30 12:39:46 +02:00
Ricardo Wurmus
849d0f0f63
gnu: r-fastica: Update to 1.2-3.
* gnu/packages/statistics.scm (r-fastica): Update to 1.2-3.
2021-09-30 12:39:46 +02:00
Ricardo Wurmus
f5cfcd0110
gnu: r-sfsmisc: Update to 1.1-12.
* gnu/packages/statistics.scm (r-sfsmisc): Update to 1.1-12.
2021-09-30 12:39:46 +02:00
Ricardo Wurmus
745e373982
gnu: r-matrixstats: Update to 0.61.0.
* gnu/packages/statistics.scm (r-matrixstats): Update to 0.61.0.
2021-09-30 12:39:46 +02:00
Ricardo Wurmus
a94068188c
gnu: r-r-utils: Update to 2.11.0.
* gnu/packages/statistics.scm (r-r-utils): Update to 2.11.0.
2021-09-30 12:39:46 +02:00
Ricardo Wurmus
295b984fbc
gnu: r-e1071: Update to 1.7-9.
* gnu/packages/statistics.scm (r-e1071): Update to 1.7-9.
2021-09-30 12:39:46 +02:00
Ricardo Wurmus
031c6f65a2
gnu: r-rngtools: Update to 1.5.2.
* gnu/packages/statistics.scm (r-rngtools): Update to 1.5.2.
2021-09-30 12:39:46 +02:00
Ricardo Wurmus
0ac0dfdf7b
gnu: r-xml: Update to 3.99-0.8.
* gnu/packages/statistics.scm (r-xml): Update to 3.99-0.8.
2021-09-30 12:39:46 +02:00
Ricardo Wurmus
d866a9c829
gnu: r-rmarkdown: Update to 2.11.
* gnu/packages/statistics.scm (r-rmarkdown): Update to 2.11.
[propagated-inputs]: Add r-jquerylib.
2021-09-30 12:39:45 +02:00
Ricardo Wurmus
087ccfcab2
gnu: r-plotrix: Update to 3.8-2.
* gnu/packages/statistics.scm (r-plotrix): Update to 3.8-2.
2021-09-30 12:39:45 +02:00
Ricardo Wurmus
3a803eacce
gnu: r-hms: Update to 1.1.1.
* gnu/packages/statistics.scm (r-hms): Update to 1.1.1.
2021-09-30 12:39:45 +02:00
Ricardo Wurmus
5317e53ae6
gnu: r-openssl: Update to 1.4.5.
* gnu/packages/statistics.scm (r-openssl): Update to 1.4.5.
2021-09-30 12:39:45 +02:00
Ricardo Wurmus
7eef4503e9
gnu: r-roxygen2: Update to 7.1.2.
* gnu/packages/statistics.scm (r-roxygen2): Update to 7.1.2.
[propagated-inputs]: Remove r-rcpp; add r-cpp11.
2021-09-30 12:39:45 +02:00
Ricardo Wurmus
b64c0e98f6
gnu: r-ade4: Update to 1.7-18.
* gnu/packages/statistics.scm (r-ade4): Update to 1.7-18.
2021-09-30 12:39:45 +02:00
Ricardo Wurmus
60d7bdf53d
gnu: r-tibble: Update to 3.1.4.
* gnu/packages/statistics.scm (r-tibble): Update to 3.1.4.
2021-09-30 12:39:45 +02:00
Ricardo Wurmus
3f631e9a6f
gnu: r-knitr: Update to 1.34.
* gnu/packages/statistics.scm (r-knitr): Update to 1.34.
[propagated-inputs]: Remove r-markdown.
2021-09-30 12:39:45 +02:00
Ricardo Wurmus
7465095951
gnu: r-stringi: Update to 1.7.4.
* gnu/packages/statistics.scm (r-stringi): Update to 1.7.4.
2021-09-30 12:39:45 +02:00
Ricardo Wurmus
81781becae
gnu: r-digest: Update to 0.6.28.
* gnu/packages/statistics.scm (r-digest): Update to 0.6.28.
2021-09-30 12:39:45 +02:00
Ricardo Wurmus
b70124ee3f
gnu: r-survival: Update to 3.2-13.
* gnu/packages/statistics.scm (r-survival): Update to 3.2-13.
2021-09-30 12:39:45 +02:00
Ricardo Wurmus
924dc71e57
gnu: r-mgcv: Update to 1.8-37.
* gnu/packages/statistics.scm (r-mgcv): Update to 1.8-37.
2021-09-30 12:39:44 +02:00
Ricardo Wurmus
669d047e82
gnu: r-nlme: Update to 3.1-153.
* gnu/packages/statistics.scm (r-nlme): Update to 3.1-153.
2021-09-30 12:39:44 +02:00
Ricardo Wurmus
2fa8bf608e
gnu: r-lattice: Update to 0.20-45.
* gnu/packages/statistics.scm (r-lattice): Update to 0.20-45.
2021-09-30 12:39:44 +02:00
Ricardo Wurmus
d66de6a370
gnu: r-zoolog: Update to 0.4.1.
* gnu/packages/cran.scm (r-zoolog): Update to 0.4.1.
2021-09-30 12:39:44 +02:00
Ricardo Wurmus
751d7ade8e
gnu: r-paws: Update to 0.1.12.
* gnu/packages/cran.scm (r-paws): Update to 0.1.12.
[propagated-inputs]: Add r-paws-developer-tools and r-paws-end-user-computing.
2021-09-30 12:39:44 +02:00
Ricardo Wurmus
dcb4174094
gnu: r-tfautograph: Update to 0.3.2.
* gnu/packages/cran.scm (r-tfautograph): Update to 0.3.2.
[propagated-inputs]: Add r-backports.
2021-09-30 12:39:44 +02:00
Ricardo Wurmus
5c7cca7522
gnu: r-rgeos: Update to 0.5-8.
* gnu/packages/cran.scm (r-rgeos): Update to 0.5-8.
2021-09-30 12:39:44 +02:00
Ricardo Wurmus
bac308a73b
gnu: r-exactextractr: Update to 0.7.0.
* gnu/packages/cran.scm (r-exactextractr): Update to 0.7.0.
2021-09-30 12:39:44 +02:00
Ricardo Wurmus
27d0656943
gnu: r-vroom: Update to 1.5.5.
* gnu/packages/cran.scm (r-vroom): Update to 1.5.5.
2021-09-30 12:39:44 +02:00
Ricardo Wurmus
140556595d
gnu: r-rjsonio: Update to 1.3-1.6.
* gnu/packages/cran.scm (r-rjsonio): Update to 1.3-1.6.
2021-09-30 12:39:43 +02:00
Ricardo Wurmus
555a8d0dd7
gnu: r-striprtf: Update to 0.5.3.
* gnu/packages/cran.scm (r-striprtf): Update to 0.5.3.
2021-09-30 12:39:43 +02:00
Ricardo Wurmus
c88e63e709
gnu: r-mlr3tuning: Update to 0.9.0.
* gnu/packages/cran.scm (r-mlr3tuning): Update to 0.9.0.
[propagated-inputs]: Add r-digest.
2021-09-30 12:39:43 +02:00
Ricardo Wurmus
c9798d0525
gnu: r-bbotk: Update to 0.4.0.
* gnu/packages/cran.scm (r-bbotk): Update to 0.4.0.
2021-09-30 12:39:43 +02:00
Ricardo Wurmus
7a576a4b4e
gnu: r-mlr3misc: Update to 0.9.4.
* gnu/packages/cran.scm (r-mlr3misc): Update to 0.9.4.
2021-09-30 12:39:43 +02:00
Ricardo Wurmus
e647344b59
gnu: r-mlr3measures: Update to 0.4.0.
* gnu/packages/cran.scm (r-mlr3measures): Update to 0.4.0.
2021-09-30 12:39:43 +02:00
Ricardo Wurmus
6369034dad
gnu: r-lgr: Update to 0.4.3.
* gnu/packages/cran.scm (r-lgr): Update to 0.4.3.
2021-09-30 12:39:42 +02:00
Ricardo Wurmus
f05c2f1232
gnu: r-dials: Update to 0.0.10.
* gnu/packages/cran.scm (r-dials): Update to 0.0.10.
2021-09-30 12:39:42 +02:00
Ricardo Wurmus
9fe7038517
gnu: r-flexsurv: Update to 2.1.
* gnu/packages/cran.scm (r-flexsurv): Update to 2.1.
2021-09-30 12:39:42 +02:00
Ricardo Wurmus
4e57e2c71d
gnu: r-cpp11: Update to 0.4.0.
* gnu/packages/cran.scm (r-cpp11): Update to 0.4.0.
2021-09-30 12:39:42 +02:00
Ricardo Wurmus
9b497264e8
gnu: r-brms: Update to 2.16.1.
* gnu/packages/cran.scm (r-brms): Update to 2.16.1.
2021-09-30 12:39:42 +02:00
Ricardo Wurmus
8838350a12
gnu: r-posterior: Update to 1.1.0.
* gnu/packages/cran.scm (r-posterior): Update to 1.1.0.
[propagated-inputs]: Add r-matrixstats.
2021-09-30 12:39:41 +02:00
Ricardo Wurmus
2a2880848c
gnu: r-openmx: Update to 2.19.8.
* gnu/packages/cran.scm (r-openmx): Update to 2.19.8.
2021-09-30 12:39:41 +02:00
Ricardo Wurmus
b3f565fe75
gnu: r-proxyc: Update to 0.2.1.
* gnu/packages/cran.scm (r-proxyc): Update to 0.2.1.
2021-09-30 12:39:41 +02:00
Ricardo Wurmus
21b1fd2b7f
gnu: r-influencer: Update to 0.1.0.1.
* gnu/packages/cran.scm (r-influencer): Update to 0.1.0.1.
2021-09-30 12:39:41 +02:00
Ricardo Wurmus
37b5ddc05c
gnu: r-lhs: Update to 1.1.3.
* gnu/packages/cran.scm (r-lhs): Update to 1.1.3.
2021-09-30 12:39:40 +02:00
Ricardo Wurmus
57a4d34e17
gnu: r-desolve: Update to 1.29.
* gnu/packages/cran.scm (r-desolve): Update to 1.29.
2021-09-30 12:39:40 +02:00
Ricardo Wurmus
4a04eef784
gnu: r-lifecycle: Update to 1.0.1.
* gnu/packages/cran.scm (r-lifecycle): Update to 1.0.1.
2021-09-30 12:39:40 +02:00
Ricardo Wurmus
29f3758be7
gnu: r-rgdal: Update to 1.5-27.
* gnu/packages/cran.scm (r-rgdal): Update to 1.5-27.
2021-09-30 12:39:40 +02:00
Ricardo Wurmus
62738c5b76
gnu: r-rhpcblasctl: Update to 0.21-247.
* gnu/packages/cran.scm (r-rhpcblasctl): Update to 0.21-247.
2021-09-30 12:39:40 +02:00
Ricardo Wurmus
fcd7092675
gnu: r-dae: Update to 3.2-11.
* gnu/packages/cran.scm (r-dae): Update to 3.2-11.
2021-09-30 12:39:39 +02:00
Ricardo Wurmus
36188dad35
gnu: r-styler: Update to 1.6.2.
* gnu/packages/cran.scm (r-styler): Update to 1.6.2.
[propagated-inputs]: Add r-glue.
[arguments]: Set HOME variable.
2021-09-30 12:39:39 +02:00
Ricardo Wurmus
84816b5633
gnu: r-float: Update to 0.2-6.
* gnu/packages/cran.scm (r-float): Update to 0.2-6.
2021-09-30 12:39:39 +02:00
Ricardo Wurmus
c7a427d966
gnu: r-arrow: Update to 5.0.0.2.
* gnu/packages/cran.scm (r-arrow): Update to 5.0.0.2.
[propagated-inputs]: Remove r-cpp11.
2021-09-30 12:39:39 +02:00
Ricardo Wurmus
122500fea8
gnu: r-aplot: Update to 0.1.1.
* gnu/packages/cran.scm (r-aplot): Update to 0.1.1.
[propagated-inputs]: Add r-ggfun, r-ggplotify, and r-yulab-utils.
2021-09-30 12:39:39 +02:00
Ricardo Wurmus
9bc8b1d950
gnu: r-ggfun: Update to 0.0.4.
* gnu/packages/cran.scm (r-ggfun): Update to 0.0.4.
2021-09-30 12:39:39 +02:00
Ricardo Wurmus
eba0e1428f
gnu: r-europepmc: Update to 0.4.1.
* gnu/packages/cran.scm (r-europepmc): Update to 0.4.1.
2021-09-30 12:39:39 +02:00
Ricardo Wurmus
9c620bdabf
gnu: r-ggplotify: Update to 0.1.0.
* gnu/packages/cran.scm (r-ggplotify): Update to 0.1.0.
2021-09-30 12:39:39 +02:00
Ricardo Wurmus
b9a4d9e4d1
gnu: r-rjava: Update to 1.0-5.
* gnu/packages/cran.scm (r-rjava): Update to 1.0-5.
2021-09-30 12:39:39 +02:00
Ricardo Wurmus
ac19d3fcc9
gnu: r-bookdown: Update to 0.24.
* gnu/packages/cran.scm (r-bookdown): Update to 0.24.
2021-09-30 12:39:39 +02:00
Ricardo Wurmus
9319c78dab
gnu: r-ibdreg: Update to 0.3.6.
* gnu/packages/cran.scm (r-ibdreg): Update to 0.3.6.
2021-09-30 12:39:38 +02:00
Ricardo Wurmus
db39f61b3e
gnu: r-bqtl: Update to 1.0-33.
* gnu/packages/cran.scm (r-bqtl): Update to 1.0-33.
2021-09-30 12:39:38 +02:00
Ricardo Wurmus
4e64840930
gnu: r-haplo-stats: Update to 1.8.7.
* gnu/packages/cran.scm (r-haplo-stats): Update to 1.8.7.
2021-09-30 12:39:38 +02:00
Ricardo Wurmus
a7bfaaaaa0
gnu: r-spdep: Update to 1.1-11.
* gnu/packages/cran.scm (r-spdep): Update to 1.1-11.
[propagated-inputs]: Add r-e1071, r-s2, and r-units.
2021-09-30 12:39:38 +02:00
Ricardo Wurmus
deae517a7d
gnu: r-blockmodeling: Update to 1.0.5.
* gnu/packages/cran.scm (r-blockmodeling): Update to 1.0.5.
2021-09-30 12:39:38 +02:00
Ricardo Wurmus
21f25071d9
gnu: r-future: Update to 1.22.1.
* gnu/packages/cran.scm (r-future): Update to 1.22.1.
2021-09-30 12:39:38 +02:00
Ricardo Wurmus
84881e5631
gnu: r-parallelly: Update to 1.28.1.
* gnu/packages/cran.scm (r-parallelly): Update to 1.28.1.
2021-09-30 12:39:38 +02:00
Ricardo Wurmus
5e289e865c
gnu: r-protviz: Update to 0.7.0.
* gnu/packages/cran.scm (r-protviz): Update to 0.7.0.
2021-09-30 12:39:38 +02:00