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1035 Commits

Author SHA1 Message Date
Ludovic Courtès
6e09ab9f61
gnu: scotch: Explicitly pass "-DINTSIZE" to CMake. 
Previously, the 'scotch' and 'pt-scotch' packages would use the default
int size, which turned out to be 32 on x86_64-linux instead of 64 as it
used to be in Scotch 6.x.

* gnu/packages/maths.scm (scotch)[arguments]: Add "-DINTSIZE" to #:configure-flags.
(scotch32)[arguments]: Likewise.
(pt-scotch)[arguments]: Likewise.
(pt-scotch32)[arguments]: Likewise.
 2022-03-07 22:49:27 +01:00
Ludovic Courtès
96bc9420cb
gnu: hypre: Remove input labels. 
* gnu/packages/maths.scm (hypre)[native-inputs, inputs]: Remove labels.
(hypre-openmpi)[inputs]: Use 'modify-inputs'.
 2022-03-02 19:26:16 +01:00
Ludovic Courtès
5a04a8a6bc
gnu: texlive-latex-wrapfig: Rename to "texlive-wrapfig". 
* gnu/packages/tex.scm (texlive-latex-wrapfig): Rename to...
(texlive-wrapfig): ... this.
(texlive-latex-wrapfig): Define as deprecated.
* gnu/packages/maths.scm (hypre)[native-inputs]: Use new name.
* gnu/packages/python-xyz.scm (python-ipython-documentation)
(python-numpy-documentation): Likewise.
 2022-03-02 19:26:16 +01:00
Julien Lepiller
8fc4cfd3ce
gnu: why3: Update to 1.4.1. 
* gnu/packages/maths.scm (why3): Update to 1.4.1.
 2022-03-02 09:45:16 +01:00
Marius Bakke
1bd1f42a31
gnu: Remove unneeded uses of 'libiconv'. 
iconv is part of glibc, there is no need to add it as input.

* gnu/packages/accessibility.scm (brltty)[inputs]: Remove LIBICONV.
* gnu/packages/compression.scm (innoextract)[inputs]: Likewise.
* gnu/packages/haskell-apps.scm (darcs)[inputs]: Likewise.
* gnu/packages/kde-multimedia.scm (k3b)[inputs]: Likewise.
* gnu/packages/linphone.scm (liblinphone)[inputs]: Likewise.
* gnu/packages/mail.scm (mailutils)[inputs]: Likewise.
* gnu/packages/maths.scm (libqalculate)[inputs]: Likewise.
* gnu/packages/pep.scm (pep-engine)[inputs]: Likewise.
* gnu/packages/vim.scm (neovim)[inputs]: Likewise.
* gnu/packages/wget.scm (wget2)[inputs]: Likewise.
* gnu/packages/telegram.scm (telegram-desktop)[inputs]: Likewise.
* gnu/packages/video.scm (transcode)[native-inputs]: Likewise.
 2022-02-15 20:44:21 +01:00
Ludovic Courtès
ee92b0fb7d
gnu: mumps: Remove input labels. 
* gnu/packages/maths.scm (mumps)[inputs]: Remove labels.
[arguments]: Adjust 'configure' phase to not rely on the "mpi" and
"blas" labels.
(mumps-metis, mumps-openmpi, mumps-metis-openmpi): Use 'modify-inputs'.
 2022-02-15 17:24:08 +01:00
Ludovic Courtès
d4709d78c3
gnu: scotch: Update to 7.0.1. 
* gnu/packages/maths.scm (scotch): Update to 7.0.1.
[source]: Switch to 'git-fetch'.
[build-system]: Switch to CMAKE-BUILD-SYSTEM.
[arguments]: Add #:configure-flags.  Remove #:make-flags.  Remove
'chdir-to-src', 'configure', and 'build-esmumps' phases.
[properties]: Update 'release-monitoring-url' property.
(scotch32, pt-scotch, pt-scotch32): Update accordingly, replacing now
useless build phases with #:configure-flags.
(scotch-shared, pt-scotch-shared): Mark as deprecated.
(mumps)[arguments]: In 'configure' phase, use '-lesmumps'
unconditionally, since that's now how pt-scotch calls it.
 2022-02-15 17:24:08 +01:00
Petr Hodina
4c1dff9abe
gnu: opencascade-occt: Update to 7.6.0. 
* gnu/packages/maths.scm (opencascade-occt): Update to 7.6.0.
  [native-inputs]: Add fontconfig.

Signed-off-by: Guillaume Le Vaillant <glv@posteo.net>
 2022-02-11 16:47:45 +01:00
Eric Bavier
10b901a437
gnu: superlu: Update to 5.3.0. 
* gnu/packages/maths.scm (superlu): Update to 5.3.0.
[source]: Adjust to new url.
 2022-02-05 00:24:40 -06:00
Efraim Flashner
264162124f
gnu: openblas: Fix building on riscv64-linux. 
* gnu/packages/maths.scm (openblas)[arguments]: Adjust make-flags on
riscv64-linux to target the correct architecture when building for
riscv64-linux.
 2022-02-01 10:44:53 +02:00
Nicolas Goaziou
c5f1f8b81e
gnu: Properly deprecate texlive-generic-ulem. 
* gnu/packages/python-xyz.scm (python-nbconvert):
* gnu/packages/maths.scm (hypre): Apply deprecation.
* gnu/packages/tex.scm (texlive-generic-ulem): Fix typo in deprecation
command.
 2022-01-28 15:05:01 +01:00
Nicolas Goaziou
2b37ec1c60
gnu: Remove occurrences of deprecated texlive-latex-capt-of. 
* gnu/packages/maths.scm (hypre):
* gnu/packages/python-xyz.scm (python-numpy-documentation):
(python-ipython-documentation): Use texlive-capt-of instead of texlive-latex-capt-of.
 2022-01-28 14:37:49 +01:00
Morgan Smith
d0744d8650
gnu: jacal: Update to 1c7. 
* gnu/packages/patches/jacal-fix-texinfo.patch: Delete file.
* gnu/local.mk (dist_patch_DATA): Delete this.
* gnu/packages/maths.scm (jacal)[source]: Delete this patch.
[version]: Update to 1c7.

Signed-off-by: Oleg Pykhalov <go.wigust@gmail.com>
 2022-01-22 12:07:55 +03:00
Felix Gruber
895a2669df
gnu: dune-pdelab: Update to 2.7.1. 
* gnu/packages/maths.scm (dune-pdelab): Update to 2.7.1.
  [version]: Use `git-version` to compute the version string.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
 2022-01-20 15:28:15 +01:00
Felix Gruber
ad0a7a16d9
gnu: dune-functions: Update to 2.7.1. 
* gnu/packages/maths.scm (dune-functions): Update to 2.7.1.
  [arguments]: Parallelize build-tests phase.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
 2022-01-20 15:28:15 +01:00
Felix Gruber
adc65e9691
gnu: dune-typetree: Update to 2.7.1. 
* gnu/packages/maths.scm (dune-typetree): Update to 2.7.1.
  [arguments]: Parallelize build-tests phase.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
 2022-01-20 15:28:14 +01:00
Felix Gruber
fb6e3fdfa7
gnu: dune-subgrid: Update to 2.7.1. 
* gnu/packages/maths.scm (dune-subgrid): Update to 2.7.1.
  [version]: Use `git-version` to compute the version string.
  [arguments]: Parallelize build-tests phase.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
 2022-01-20 15:28:14 +01:00
Felix Gruber
fff6f00c35
gnu: dune-alugrid: Update to 2.7.1. 
* gnu/packages/maths.scm (dune-alugrid): Update to 2.7.1.
  [version]: Use `git-version` to compute the version string.
  [arguments]: Parallelize build-tests phase.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
 2022-01-20 15:28:14 +01:00
Felix Gruber
ef07f19b93
gnu: dune-localfunctions: Update to 2.7.1. 
* gnu/packages/maths.scm (dune-localfunctions): Update to 2.7.1.
  [arguments]: Parallelize build-tests phase.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
 2022-01-20 15:28:14 +01:00
Felix Gruber
8159cd08d2
gnu: dune-istl: Update to 2.7.1. 
* gnu/packages/maths.scm (dune-istl): Update to 2.7.1.
  [arguments]: Parallelize build-tests phase.
  [source](patches) Remove patch that is no longer needed.
* gnu/packages/patches/dune-istl-2.7-fix-non-mpi-tests.patch: Remove file.
* gnu/local.mk (dist_patch_DATA): Remove above patch.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
 2022-01-20 15:28:14 +01:00
Felix Gruber
67e6b69916
gnu: dune-grid: Update to 2.7.1. 
* gnu/packages/maths.scm (dune-grid): Update to 2.7.1.
  [arguments]: Parallelize build-tests phase.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
 2022-01-20 15:28:14 +01:00
Felix Gruber
15ae25bd25
gnu: dune-uggrid: Update to 2.7.1. 
* gnu/packages/maths.scm (dune-uggrid): Update to 2.7.1.
  [arguments]: Parallelize build-tests phase.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
 2022-01-20 15:28:14 +01:00
Felix Gruber
9e5cdc4a6c
gnu: dune-geometry: Update to 2.7.1. 
* gnu/packages/maths.scm (dune-geometry): Update to 2.7.1.
  [arguments]: Parallelize build-tests phase.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
 2022-01-20 15:28:13 +01:00
Felix Gruber
3bfcc63c31
gnu: dune-common: Update to 2.7.1. 
* gnu/packages/maths.scm (dune-common): Update to 2.7.1.
  [arguments]: Parallelize build-tests phase.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
 2022-01-20 15:28:13 +01:00
Felix Gruber
6b36def51c
gnu: Modernize add-openmpi-to-dune-package 
* gnu/packages/maths.scm (add-openmpi-to-dune-package): Use
  modify-inputs.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
 2022-01-20 15:28:13 +01:00
Felix Gruber
cc4553c6b3
gnu: Remove python2-cvxopt. 
* gnu/packages/maths.scm (python2-cvxopt): Remove variable.

Signed-off-by: Leo Famulari <leo@famulari.name>
 2022-01-12 14:12:47 -05:00
Felix Gruber
21bc72ad81
gnu: python-cvxopt: Update to 1.2.7. 
* gnu/packages/maths.scm (python-cvxopt): Update to 1.2.7.

Signed-off-by: Leo Famulari <leo@famulari.name>
 2022-01-12 14:12:47 -05:00
Felix Gruber
cd68fc1e42
gnu: ceres: Update to 2.0.0. 
* gnu/packages/maths.scm (ceres): Update to 2.0.0.
  [inputs]: Use simplified format.
  (ceres-solver-benchmarks)[phases]: Add schur_eliminator_benchmark.
  Replace autodiff_cost_function_benchmark with new autodiff_benchmarks.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
 2022-01-11 20:35:00 +01:00
Felix Gruber
80f616139c
gnu: dealii: Update to 9.3.2. 
* gnu/packages/maths.scm (dealii): Update to 9.3.2.
  [source]: Add dealii-fix-compiliation-with-boost-1.78.patch and
  dealii-fix-sundials.patch.
  [inputs]: Use simplified format.
  [native-inputs]: Use simplified format.
* gnu/packages/patches/dealii-fix-compiliation-with-boost-1.78.patch:
  New file.
* gnu/packages/patches/dealii-fix-sundials.patch: New file.
* gnu/local.mk: Add new patch files.

Signed-off-by: Nicolas Goaziou <mail@nicolasgoaziou.fr>
 2022-01-11 10:43:47 +01:00
Ludovic Courtès
4cd0b37f6b
gnu: gsl: Add 'tunable?' property. 
* gnu/packages/maths.scm (gsl)[properties]: New field.
 2022-01-01 15:36:12 +01:00
Ludovic Courtès
6b70412370
gnu: Add ceres-solver-benchmarks. 
* gnu/packages/maths.scm (ceres-solver-benchmarks): New variable.
 2022-01-01 15:23:53 +01:00
Ludovic Courtès
24667081ad
gnu: ceres-solver: Mark as tunable. 
* gnu/packages/maths.scm (ceres)[properties]: New field.
 2022-01-01 15:23:53 +01:00
Vagrant Cascadian
ae876b9ce1
gnu: Capitalize beginning of synopsis. 
* gnu/packages/admin.scm (hungrycat)[synopsis]: Captalize.
* gnu/packages/cobol.scm (gnucobol)[synopsis]: Likewise.
* gnu/packages/cpp.scm (clipper)[synopsis]: Likewise.
* gnu/packages/crates-graphics.scm (rust-piston-texture-0.8)[synopsis]:
  Likewise.
* gnu/packages/crates-io.scm (rust-alloc-stdlib-0.2, rust-atom-0.3,
  rust-oorandom-11.1, rust-r2d2, rust-scheduled-thread-pool-0.2,
  rust-takeable-option-0.4, rust-ttf-parser-0.12)[synopsis]: Likewise.
* gnu/packages/games.scm (roguebox-adventures)[synopsis]: Likewise.
* gnu/packages/gl.scm (libepoxy)[synopsis]: Likewise.
* gnu/packages/gnome-xyz.scm (arc-theme)[synopsis]: Likewise.
* gnu/packages/haskell-xyz.scm (ghc-cborg-json, ghc-rio)[synopsis]: Likewise.
* gnu/packages/installers.scm (mingw-path)[synopsis]: Likewise.
* gnu/packages/lisp-xyz.scm (sbcl-cl-utilities)[synopsis]: Likewise.
* gnu/packages/maths.scm (coda)[synopsis]: Likewise.
* gnu/packages/ocaml.scm (ocaml4.07-ppx-sexp-message)[synopsis]: Likewise.
* gnu/packages/perl6.scm (perl6-json)[synopsis]: Likewise.
* gnu/packages/python-xyz.scm (python-markuppy,
  python-febelfin-coda)[synopsis]: Likewise.
* gnu/packages/statistics.scm (r-magrittr)[synopsis]: Likewise.
* gnu/packages/terminals.scm (sakura)[synopsis]: Likewise.
 2021-12-30 21:23:27 -08:00
Vagrant Cascadian
9c3c68dae4
gnu: Remove leading article from synopsis. 
* gnu/packages/admin.scm (hungrycat)[synopsis]: Remove leading article.
* gnu/packages/cobol.scm (gnucobol)[synopsis]: Likewise.
* gnu/packages/cpp.scm (clipper)[synopsis]: Likewise.
* gnu/packages/crates-graphics.scm (rust-piston-texture-0.8)[synopsis]:
  Likewise.
* gnu/packages/crates-io.scm (rust-alloc-stdlib-0.2, rust-atom-0.3,
  rust-oorandom-11.1, rust-r2d2, rust-scheduled-thread-pool-0.2,
  rust-takeable-option-0.4, rust-ttf-parser-0.12,
  rust-svd-parser-0.9)[synopsis]: Likewise.
* gnu/packages/games.scm (roguebox-adventures)[synopsis]: Likewise.
* gnu/packages/gl.scm (libepoxy)[synopsis]: Likewise.
* gnu/packages/gnome-xyz.scm (arc-theme)[synopsis]: Likewise.
* gnu/packages/haskell-xyz.scm (ghc-cborg-json, ghc-rio)[synopsis]: Likewise.
* gnu/packages/installers.scm (mingw-path)[synopsis]: Likewise.
* gnu/packages/lisp-xyz.scm (sbcl-cl-utilities)[synopsis]: Likewise.
* gnu/packages/lisp.scm (gcl, clisp)[synopsis]: Likewise.
* gnu/packages/maths.scm (coda)[synopsis]: Likewise.
* gnu/packages/ocaml.scm (ocaml4.07-ppx-sexp-message)[synopsis]: Likewise.
* gnu/packages/perl6.scm (perl6-json)[synopsis]: Likewise.
* gnu/packages/python-xyz.scm (python-pari-jupyter, python-markuppy,
  python-febelfin-coda)[synopsis]: Likewise.
* gnu/packages/scheme.scm (mit-scheme)[synopsis]: Likewise.
* gnu/packages/statistics.scm (r-magrittr)[synopsis]: Likewise.
* gnu/packages/terminals.scm (sakura)[synopsis]: Likewise.
 2021-12-30 20:54:47 -08:00
Marius Bakke
a39e64bc22
gnu: Add feedgnuplot. 
* gnu/packages/maths.scm (feedgnuplot): New public variable.
 2021-12-26 00:58:28 +01:00
Julien Lepiller
2317a5e17f
gnu: frama-c: Update to 24.0. 
* gnu/packages/maths.scm (frama-c): Update to 24.0.
 2021-12-22 02:07:21 +01:00
Liliana Marie Prikler
78bfbfb5a7
gnu: cglm: Use meson-build-system. 
The CMake-based builds fail to correctly encode the version, leading to build
failures in dependencies.  See <https://bugs.gnu.org/52663>.

* gnu/packages/maths.scm (cglm)[build-system]: Change to meson-build-system.
[arguments]: Adjust #:configure-flags accordingly.
 2021-12-19 21:46:31 +01:00
Liliana Marie Prikler
42b43c59a5
gnu: cglm: Update to 0.8.4. 
* gnu/packages/maths.scm (cglm): Update to 0.8.4.
 2021-12-19 21:46:30 +01:00
Ludovic Courtès
e3196755e6
gnu: Further simplify package inputs. 
This is the result of running:

  ./pre-inst-env guix style --input-simplification=safe

and manually undoing changes on a dozen of packages to reduce
rebuilds (derivations for emacs, icecat, and libreoffice are unchanged.)
 2021-12-13 22:15:07 +01:00
Ludovic Courtès
8394619bac
gnu: Simplify package inputs. 
This commit was obtained by running:

  ./pre-inst-env guix style

without any additional argument.
 2021-12-13 17:48:25 +01:00
Ludovic Courtès
9155566392
gnu: sundials: Add 'release-monitoring-url' property. 
* gnu/packages/maths.scm (sundials)[properties]: New field.
 2021-12-12 22:16:32 +01:00
Ludovic Courtès
951a4db989
gnu: sundials: Build with '-fcommon'. 
* gnu/packages/maths.scm (sundials)[arguments]: Pass "-DCMAKE_C_FLAGS".
 2021-12-12 22:16:32 +01:00
Efraim Flashner
1da7f9089f
gnu: Add gsl-static. 
* gnu/packages/maths.scm (gsl-static): New variable.
 2021-12-09 23:17:26 +02:00
Ludovic Courtès
95a4965f2d
gnu: python-slepc4py: Update to 3.16.1. 
This is a followup 5b4d1e57b6.

* gnu/packages/maths.scm (slepc-openmpi)[inputs]: Move ARPACK-NG-OPENMPI to...
[propagated-inputs]: ... here.
(python-slepc4py): Update to 3.16.1.
 2021-12-08 23:04:00 +01:00
Ludovic Courtès
fe55ae488b
gnu: python-petsc4py: Update to 3.16.1. 
This is a followup to 07ac13a26a.

* gnu/packages/maths.scm (python-petsc4py): Update to 3.16.1.
 2021-12-08 22:59:44 +01:00
Ludovic Courtès
77c8382bb6
gnu: mumps: Allow compilation with GCC 10. 
Following the suggestion at
<https://community.freefem.org/t/compline-on-macos-10-15-6/543>.

* gnu/packages/maths.scm (mumps)[arguments]: In 'configure' phase, add
'-fallow-argument-mismatch' to 'OPTF'.
 2021-12-08 18:56:53 +01:00
Ricardo Wurmus
9bc0f45df5
Merge remote-tracking branch 'origin/master' into core-updates-frozen 2021-12-05 19:17:41 +01:00
Ricardo Wurmus
c13046cb68
gnu: clapack: Pass -fcommon to compiler. 
* gnu/packages/maths.scm (clapack)[arguments]: Set CFLAGS.
 2021-12-05 15:04:04 +01:00
Ricardo Wurmus
ae0acf6b6d
gnu: clapack: Remove trailing #T. 
* gnu/packages/maths.scm (clapack)[arguments]: Remove trailing #T from build
phases.
 2021-12-05 15:04:04 +01:00
Marius Bakke
db5646d957
gnu: Adjust for python-build-system behavior change. 
Commit cb72f9a773 changed the semantics of
SITE-PACKAGES, but did not adjust all callers.

* gnu/packages/bioinformatics.scm (python-pyvcf)[arguments]: Adjust for
missing trailing slash.
* gnu/packages/maths.scm (nomad-optimizer)[arguments]: Likewise.
* gnu/packages/patchutils.scm (patchwork)[arguments]: Likewise.
 2021-12-05 14:02:10 +01:00