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85109 Commits

Author SHA1 Message Date
Ricardo Wurmus
73cda719ef
gnu: r-acceptancesampling: Update to 1.0-8. 
* gnu/packages/cran.scm (r-acceptancesampling): Update to 1.0-8.
 2022-04-12 15:59:53 +02:00
Ricardo Wurmus
e283da0b8e
gnu: r-dofuture: Update to 0.12.1. 
* gnu/packages/cran.scm (r-dofuture): Update to 0.12.1.
 2022-04-12 15:59:53 +02:00
Ricardo Wurmus
fd1f62a8a2
gnu: r-infotheo: Update to 1.2.0.1. 
* gnu/packages/cran.scm (r-infotheo): Update to 1.2.0.1.
 2022-04-12 15:59:53 +02:00
Ricardo Wurmus
dd8b3daad5
gnu: r-hash: Update to 2.2.6.2. 
* gnu/packages/cran.scm (r-hash): Update to 2.2.6.2.
 2022-04-12 15:59:53 +02:00
Ricardo Wurmus
9613f4d28d
gnu: r-sjlabelled: Update to 1.2.0. 
* gnu/packages/cran.scm (r-sjlabelled): Update to 1.2.0.
[propagated-inputs]: Add r-datawizard.
 2022-04-12 15:59:53 +02:00
Ricardo Wurmus
5db7d12c5b
gnu: r-insight: Update to 0.17.0. 
* gnu/packages/cran.scm (r-insight): Update to 0.17.0.
 2022-04-12 15:59:53 +02:00
Ricardo Wurmus
5bf05abb35
gnu: r-officer: Update to 0.4.2. 
* gnu/packages/cran.scm (r-officer): Update to 0.4.2.
[native-inputs]: Remove r-knitr.
 2022-04-12 15:59:53 +02:00
Ricardo Wurmus
9d7c65735c
gnu: r-rdpack: Update to 2.3. 
* gnu/packages/cran.scm (r-rdpack): Update to 2.3.
 2022-04-12 15:59:53 +02:00
Ricardo Wurmus
adfcda5028
gnu: r-rbibutils: Update to 2.2.8. 
* gnu/packages/cran.scm (r-rbibutils): Update to 2.2.8.
 2022-04-12 15:59:53 +02:00
Ricardo Wurmus
209d20cb3f
gnu: r-polynom: Update to 1.4-1. 
* gnu/packages/cran.scm (r-polynom): Update to 1.4-1.
[native-inputs]: Add r-knitr.
 2022-04-12 15:59:53 +02:00
Ricardo Wurmus
8d6e4cfacd
gnu: r-fansi: Update to 1.0.3. 
* gnu/packages/cran.scm (r-fansi): Update to 1.0.3.
 2022-04-12 15:59:53 +02:00
Ricardo Wurmus
f42b3ac904
gnu: r-fstcore: Update to 0.9.12. 
* gnu/packages/cran.scm (r-fstcore): Update to 0.9.12.
[inputs]: Add zlib.
[native-inputs]: Add pkg-config.
 2022-04-12 15:59:52 +02:00
Ricardo Wurmus
c5979221ff
gnu: r-cubature: Update to 2.0.4.4. 
* gnu/packages/cran.scm (r-cubature): Update to 2.0.4.4.
 2022-04-12 15:59:52 +02:00
Ricardo Wurmus
2321ee0911
gnu: r-tseries: Update to 0.10-50. 
* gnu/packages/cran.scm (r-tseries): Update to 0.10-50.
 2022-04-12 15:59:52 +02:00
Ricardo Wurmus
76322379bf
gnu: r-leaflet: Update to 2.1.1. 
* gnu/packages/cran.scm (r-leaflet): Update to 2.1.1.
 2022-04-12 15:59:52 +02:00
Ricardo Wurmus
4b13e9cedf
gnu: r-tinytex: Update to 0.38. 
* gnu/packages/cran.scm (r-tinytex): Update to 0.38.
 2022-04-12 15:59:52 +02:00
Ricardo Wurmus
87e22a6ee3
gnu: r-uuid: Update to 1.0-4. 
* gnu/packages/cran.scm (r-uuid): Update to 1.0-4.
 2022-04-12 15:59:52 +02:00
Ricardo Wurmus
848a5f084d
gnu: r-vctrs: Update to 0.4.0. 
* gnu/packages/cran.scm (r-vctrs): Update to 0.4.0.
[propagated-inputs]: Remove r-ellipsis; add r-cli.
 2022-04-12 15:59:52 +02:00
Ricardo Wurmus
9b87c4d761
gnu: r-seriation: Update to 1.3.5. 
* gnu/packages/cran.scm (r-seriation): Update to 1.3.5.
 2022-04-12 15:59:52 +02:00
Ricardo Wurmus
1cdff104e0
gnu: r-processx: Update to 3.5.3. 
* gnu/packages/cran.scm (r-processx): Update to 3.5.3.
 2022-04-12 15:59:52 +02:00
Ricardo Wurmus
8cb09ced1a
gnu: r-psych: Update to 2.2.3. 
* gnu/packages/cran.scm (r-psych): Update to 2.2.3.
 2022-04-12 15:59:52 +02:00
Ricardo Wurmus
b17977beeb
gnu: r-ddalpha: Update to 1.3.13. 
* gnu/packages/cran.scm (r-ddalpha): Update to 1.3.13.
 2022-04-12 15:59:52 +02:00
Ricardo Wurmus
92d3dfb18f
gnu: r-lmtest: Update to 0.9-40. 
* gnu/packages/cran.scm (r-lmtest): Update to 0.9-40.
 2022-04-12 15:59:52 +02:00
Ricardo Wurmus
b3b1d1a48a
gnu: r-restrserve: Update to 1.0.0. 
* gnu/packages/cran.scm (r-restrserve): Update to 1.0.0.
 2022-04-12 15:59:52 +02:00
Ricardo Wurmus
372dec0880
gnu: r-auc: Update to 0.3.2. 
* gnu/packages/cran.scm (r-auc): Update to 0.3.2.
 2022-04-12 15:59:51 +02:00
Ricardo Wurmus
6325f0e27d
gnu: r-rcppthread: Update to 2.1.3. 
* gnu/packages/cran.scm (r-rcppthread): Update to 2.1.3.
 2022-04-12 15:59:51 +02:00
Ricardo Wurmus
b5c3a90adb
gnu: r-rcpp: Update to 1.0.8.3. 
* gnu/packages/cran.scm (r-rcpp): Update to 1.0.8.3.
 2022-04-12 15:59:51 +02:00
Ricardo Wurmus
d5ee4a0ac4
gnu: r-sass: Update to 0.4.1. 
* gnu/packages/cran.scm (r-sass): Update to 0.4.1.
 2022-04-12 15:59:51 +02:00
Ricardo Wurmus
095e64db88
gnu: r-hwriter: Update to 1.3.2.1. 
* gnu/packages/cran.scm (r-hwriter): Update to 1.3.2.1.
 2022-04-12 15:59:51 +02:00
Ricardo Wurmus
658842b0fd
gnu: r-hmm: Update to 1.0.1. 
* gnu/packages/cran.scm (r-hmm): Update to 1.0.1.
 2022-04-12 15:59:51 +02:00
Ricardo Wurmus
c7ade5c6cc
gnu: r-readxl: Update to 1.4.0. 
* gnu/packages/cran.scm (r-readxl): Update to 1.4.0.
[propagated-inputs]: Remove r-rcpp; add r-cpp11.
[native-inputs]: Add r-knitr.
 2022-04-12 15:59:51 +02:00
Ricardo Wurmus
829b934572
gnu: r-mboost: Update to 2.9-6. 
* gnu/packages/cran.scm (r-mboost): Update to 2.9-6.
 2022-04-12 15:59:51 +02:00
Ricardo Wurmus
df9bd7785d
gnu: r-ggpmisc: Update to 0.4.6. 
* gnu/packages/cran.scm (r-ggpmisc): Update to 0.4.6.
 2022-04-12 15:59:51 +02:00
Ricardo Wurmus
c63d9495ab
gnu: r-ggpp: Update to 0.4.4. 
* gnu/packages/cran.scm (r-ggpp): Update to 0.4.4.
 2022-04-12 15:59:51 +02:00
Ricardo Wurmus
bfeafc8b1d
gnu: r-waldo: Update to 0.4.0. 
* gnu/packages/cran.scm (r-waldo): Update to 0.4.0.
 2022-04-12 15:59:51 +02:00
Ricardo Wurmus
f233cb384a
gnu: r-datawizard: Update to 0.4.0. 
* gnu/packages/cran.scm (r-datawizard): Update to 0.4.0.
 2022-04-12 15:59:51 +02:00
Ricardo Wurmus
418c6aff40
gnu: r-abn: Update to 2.7-0. 
* gnu/packages/bioconductor.scm (r-abn): Update to 2.7-0.
[propagated-inputs]: Add r-graph.
 2022-04-12 15:59:51 +02:00
Ricardo Wurmus
ba5e32d9ce
gnu: r-nmf: Update to 0.24.0. 
* gnu/packages/bioconductor.scm (r-nmf): Update to 0.24.0.
 2022-04-12 15:59:51 +02:00
Guillaume Le Vaillant
59377f88ed
gnu: cl-py4cl: Improve package definition. 
This is a follow-up to 917c25b3ba.

* gnu/packages/lisp-xyz.scm (sbcl-py4cl)[propagated-inputs]: Move python
  to...
  [inputs]: ... here.
  [arguments]: Use 'search-input-file' instead of 'which' in
  'fix-python3-path' phase.
 2022-04-12 15:08:08 +02:00
Paul A. Patience
917c25b3ba
gnu: cl-py4cl: Fix path to python3. 
* gnu/packages/lisp-xyz.scm (sbcl-py4cl)[arguments]: Add the
  'fix-python3-path' phase.

Signed-off-by: Guillaume Le Vaillant <glv@posteo.net>
 2022-04-12 13:59:17 +02:00
Paul A. Patience
1f22508a8a
gnu: cl-py4cl: Fix path to py4cl.py. 
* gnu/packages/lisp-xyz.scm (sbcl-py4cl)[arguments]: Fix
  'replace-*base-directory*-var' phase.

Signed-off-by: Guillaume Le Vaillant <glv@posteo.net>
 2022-04-12 13:53:34 +02:00
Attila Lendvai
d3d2881acf
gnu: trezor-agent: Fix it by deleting the sanity-check phase. 
* gnu/packages/finance.scm (trezor-agent)[arguments]: Delete 'sanity-check'
  phase.

Signed-off-by: Guillaume Le Vaillant <glv@posteo.net>
 2022-04-12 13:39:12 +02:00
Vagrant Cascadian
ba1ce250c8
gnu: genimage: Update to 15. 
* gnu/packages/genimage.scm (genimage): Update to 15.
  [arguments]: Update 'fix-failing-tests phase to reference new files.
 2022-04-11 14:48:35 -07:00
Vagrant Cascadian
8aae96b44c
gnu: genext2fs: Update to 1.5.0. 
* gnu/packages/linux.scm (genext2fs): Update to 1.5.0.
  [source] Update URL.
  [arguments] Remove 'apply-debian-patches phase.
  [home-page] Update URL.
 2022-04-11 14:48:26 -07:00
zimoun
6413d0898b
gnu: Add r-copykat. 
* gnu/packages/bioinformatics.scm (r-copykat): New variable.
 2022-04-11 16:11:45 +02:00
zimoun
b96c0b051d
gnu: Add r-dlm. 
* gnu/packages/cran.scm (r-dlm): New variable.
 2022-04-11 16:11:45 +02:00
zimoun
7cd1dd3e10
gnu: Add r-paralleldist. 
* gnu/packages/cran.scm (r-paralleldist): New variable.
 2022-04-11 16:11:45 +02:00
Ludovic Courtès
88d0b086a9
gnu: openmpi: Remove trailing #t. 
* gnu/packages/mpi.scm (openmpi)[arguments]: Remove trailing #t.
 2022-04-11 15:49:33 +02:00
Ludovic Courtès
46b3b7e5a7
gnu: openmpi: Update to 4.1.3. 
* gnu/packages/mpi.scm (openmpi): Update to 4.1.3.
 2022-04-11 15:49:33 +02:00
Ludovic Courtès
b478d55ac4
gnu: openmpi: Remove input labels. 
* gnu/packages/mpi.scm (openmpi)[inputs]: Remove input labels.
 2022-04-11 15:49:33 +02:00
Ludovic Courtès
649556ea09
gnu: hwloc: Remove trailing #t. 
* gnu/packages/mpi.scm (hwloc-1)[arguments]: Remove trailing #t.
(hwloc-2)[arguments]: Likewise.
 2022-04-11 15:49:33 +02:00
Ludovic Courtès
ac2d36559f
gnu: hwloc@1: Use 'target-arm32?' in conditional. 
Suggested by Maxime Devos.

* gnu/packages/mpi.scm (hwloc-1)[inputs]: Use 'target-arm32?' rather
than custom code.
 2022-04-11 15:49:33 +02:00
Ludovic Courtès
d81d8b1258
gnu: hwloc: Remove input labels. 
* gnu/packages/mpi.scm (hwloc-1)[inputs]: Remove labels.
(hwloc-2)[inputs]: Use 'modify-inputs'.
 2022-04-11 15:49:33 +02:00
Philippe SWARTVAGHER
37fa61364e
gnu: hwloc@1: Update to 1.11.13. 
* gnu/packages/patches/hwloc-1-test-btrfs.patch: New file.
* gnu/local.mk (dist_patch_DATA): Add it.
* gnu/packages/mpi.scm (hwloc-1): Use it and update to 1.11.13.

Co-authored-by: Ludovic Courtès <ludovic.courtes@inria.fr>
 2022-04-11 15:49:32 +02:00
Mădălin Ionel Patrașcu
3704a7b897
gnu: Add r-tricycle. 
* gnu/packages/bioconductor.scm (r-tricycle): New variable.

Signed-off-by: Ricardo Wurmus <rekado@elephly.net>
 2022-04-11 15:39:29 +02:00
Ricardo Wurmus
fc7f807078
gnu: Add python-stopit. 
* gnu/packages/python-xyz.scm (python-stopit): New variable.
 2022-04-11 15:39:29 +02:00
Ricardo Wurmus
6145e25afa
gnu: Add python-yte. 
* gnu/packages/python-xyz.scm (python-yte): New variable.
 2022-04-11 15:39:29 +02:00
Ricardo Wurmus
8499f14a21
gnu: Add python-plac. 
* gnu/packages/python-xyz.scm (python-plac): New variable.
 2022-04-11 15:39:29 +02:00
Ricardo Wurmus
a5412de56e
gnu: Add python-parameterizedtestcase. 
* gnu/packages/python-check.scm (python-parameterizedtestcase): New variable.
 2022-04-11 15:39:29 +02:00
Ricardo Wurmus
c5ee8f6e29
gnu: python-aws-xray-sdk: Update to 2.9.0. 
* gnu/packages/python-web.scm (python-aws-xray-sdk): Update to 2.9.0.
[arguments]: Delete two more test files; disable two tests.
 2022-04-11 15:39:29 +02:00
Marius Bakke
d06287bd16
gnu: python-django@2.2: Update to 2.2.28 [fixes CVE-2022-2834]. 
* gnu/packages/django.scm (python-django-2.2): Update to 2.2.28.
 2022-04-11 15:21:53 +02:00
Marius Bakke
a75411703a
gnu: python-django@3.2: Update to 3.2.13 [fixes CVE-2022-2834]. 
* gnu/packages/django.scm (python-django-3.2): Update to 3.2.13.
 2022-04-11 15:21:53 +02:00
Marius Bakke
98d3b7f10d
gnu: python-django: Update to 4.0.4 [fixes CVE-2022-2834]. 
* gnu/packages/django.scm (python-django-4.0): Update to 4.0.4.
 2022-04-11 15:21:53 +02:00
Ludovic Courtès
087abdb9a2
gnu: Add 'upstream-name' property to the netfilter libraries. 
This allows the 'generic-html' updater to find updates.

* gnu/packages/linux.scm (libnetfilter-conntrack)[properties]: New field.
(libnetfilter-cttimeout)[properties]: New field.
(libnetfilter-cthelper)[properties]: New field.
(libnetfilter-queue)[properties]: New field.
(libnetfilter-acct)[properties]: New field.
(libnetfilter-log)[properties]: New field.
 2022-04-11 13:58:46 +02:00
fesoj000
b805ea194a
gnu: Add ulogd 
* gnu/packages/linux.scm (ulogd): New variable.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
 2022-04-11 13:51:07 +02:00
fesoj000
2a1908b48c
gnu: Add libnetfilter-log 
* gnu/packages/linux.scm (libnetfilter-log): New variable.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
 2022-04-11 13:51:07 +02:00
fesoj000
eb1d2ae7e0
gnu: Add nfacct 
* gnu/packages/linux.scm (nfacct): New variable.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
 2022-04-11 13:51:07 +02:00
fesoj000
2d3c33b8ba
gnu: Add libnetfilter-acct 
* gnu/packages/linux.scm (libnetfilter-acct): New variable.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
 2022-04-11 13:51:06 +02:00
fesoj000
f70c8a0276
gnu: Add conntrack-tools 
* gnu/packages/linux.scm (conntrack-tools): New variable.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
 2022-04-11 13:50:38 +02:00
fesoj000
fdfd6ac8ae
gnu: Add libnetfilter-queue 
* gnu/packages/linux.scm (libnetfilter-queue): New variable.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
 2022-04-11 13:49:46 +02:00
fesoj000
6d9cfb91aa
gnu: Add libnetfilter-cthelper 
* gnu/packages/linux.scm (libnetfilter-cthelper): New variable.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
 2022-04-11 13:48:30 +02:00
fesoj000
0f31129e4e
gnu: Add libnetfilter-cttimeout 
* gnu/packages/linux.scm (libnetfilter-cttimeout): New variable.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
 2022-04-11 13:48:28 +02:00
fesoj000
469f85d206
gnu: Add libnetfilter-conntrack 
* gnu/packages/linux.scm (libnetfilter-conntrack): New variable.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
 2022-04-11 13:47:48 +02:00
Julien Lepiller
24851bf6f9
gnu: Add ocaml-core. 
* gnu/packages/ocaml.scm (ocaml-core): New variable.
(ocaml4.07-core): Inherit from it.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
 2022-04-11 11:56:53 +02:00
Julien Lepiller
16e02d2b0e
gnu: ocaml-jane-street-headers: Add variant. 
* gnu/packages/ocaml.scm (ocaml-jane-street-heaers)[properties]: Add
ocaml4.07 variant.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
 2022-04-11 11:56:52 +02:00
Julien Lepiller
0d7b065b1e
gnu: Add ocaml-timezone. 
* gnu/packages/ocaml.scm (ocaml-timezone): New variable.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
 2022-04-11 11:56:49 +02:00
Julien Lepiller
e2a2c166a1
gnu: Add ocaml-core-kernel. 
* gnu/packages/ocaml.scm (ocaml-core-kernel): New variable.
(ocaml4.07-core-kernel): Inherit from it.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
 2022-04-11 11:56:48 +02:00
Julien Lepiller
6cf981afcd
gnu: Add ocaml-base-bigstring. 
* gnu/packages/ocaml.scm (ocaml-base-bigstring): New variable.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
 2022-04-11 11:56:43 +02:00
Julien Lepiller
9fe3632e64
gnu: Add ocaml-ppx-jane. 
* gnu/packages/ocaml.scm (ocaml-ppx-jane): New variable.
(ocaml4.07-ppx-jane): Inherit from it.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
 2022-04-11 11:56:40 +02:00
Julien Lepiller
e487d5666a
gnu: Add ocaml-ppx-fail. 
* gnu/packages/ocaml.scm (ocaml-ppx-fail): New variable.
(ocaml4.07-ppx-fail): Inherit from it.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
 2022-04-11 11:56:39 +02:00
Julien Lepiller
49a106f14e
gnu: Add ocaml-base-quickcheck. 
* gnu/packages/ocaml.scm (ocaml-base-quickcheck): New variable.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
 2022-04-11 11:56:36 +02:00
Julien Lepiller
5e448f5f94
gnu: Add ocaml-splittable-random. 
* gnu/packages/ocaml.scm (ocaml-splittable-random): New variable.
(ocaml4.07-splittable-random): Inherit from it.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
 2022-04-11 11:56:33 +02:00
Julien Lepiller
acb69501da
gnu: Add ocaml-ppx-sexp-message. 
* gnu/packages/ocaml.scm (ocaml-ppx-sexp-message): New variable.
(ocaml4.07-ppx-sexp-message): Inherit from it.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
 2022-04-11 11:56:30 +02:00
Julien Lepiller
166168c208
gnu: Add ocaml-ppx-sexp-value. 
* gnu/packages/ocaml.scm (ocaml-ppx-sexp-value): New variable.
(ocaml4.07-ppx-sexp-value): Inherit from it.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
 2022-04-11 11:56:29 +02:00
Julien Lepiller
755122b3af
gnu: Add ocaml-ppx-bench. 
* gnu/packages/ocaml.scm (ocaml-ppx-bench): New variable.
(ocaml4.07-ppx-bench): Inherit from it.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
 2022-04-11 11:56:26 +02:00
Julien Lepiller
e5deab0a7a
gnu: Add ocaml-ppx-bin-prot. 
* gnu/packages/ocaml.scm (ocaml-ppx-bin-prot): New variable.
(ocaml4.07-ppx-bin-prot): Inherit from it.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
 2022-04-11 11:56:24 +02:00
Julien Lepiller
76a416bf04
gnu: Add ocaml-bin-prot. 
* gnu/packages/ocaml.scm (ocaml-bin-prot): New variable.
(ocaml4.07-bin-prot): Inherit from it.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
 2022-04-11 11:56:23 +02:00
Julien Lepiller
6f8ae2b2b9
gnu: Add ocaml-ppx-fixed-literal. 
* gnu/packages/ocaml.scm (ocaml-ppx-fixed-literal): New variable.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
 2022-04-11 11:56:21 +02:00
Julien Lepiller
a703b1d9c5
gnu: Add ocaml-ppx-module-timer. 
* gnu/packages/ocaml.scm (ocaml-ppx-module-timer): New variable.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
 2022-04-11 11:56:19 +02:00
Julien Lepiller
5caa91e219
gnu: Add ocaml-ppx-pipebang. 
* gnu/packages/ocaml.scm (ocaml-ppx-pipebang): New variable.
(ocaml4.07-ppx-pipebang): Inherit from it.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
 2022-04-11 11:56:18 +02:00
Julien Lepiller
bee0de9365
gnu: Add ocaml-ppx-stable. 
* gnu/packages/ocaml.scm (ocaml-ppx-stable): New variable.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
 2022-04-11 11:56:15 +02:00
Julien Lepiller
ca36468083
gnu: Add ocaml-ppx-string. 
* gnu/packages/ocaml.scm (ocaml-ppx-string): New variable.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
 2022-04-11 11:56:12 +02:00
Julien Lepiller
a18414adc4
gnu: Add ocaml-ppx-typerep-conv. 
* gnu/packages/ocaml.scm (ocaml-ppx-typerep-conv): New variable.
(ocaml4.07-ppx-typerep-conv): Inherit from it.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
 2022-04-11 11:56:10 +02:00
Julien Lepiller
d9f0685dea
gnu: Add ocaml-typerep. 
* gnu/packages/ocaml.scm (ocaml-typerep): New variable.
(ocaml4.07-typerep): Inherit from it.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
 2022-04-11 11:56:07 +02:00
Julien Lepiller
36e0e198fe
gnu: Add ocaml-spawn. 
* gnu/packages/ocaml.scm (ocaml-spawn): New variable.
(ocaml4.07-spawn): Inherit from it.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
 2022-04-11 11:56:03 +02:00
pukkamustard
d79e10b7e0
gnu: ocaml-odoc: Update to 2.2.0-alpha. 
* gnu/packages/ocaml.scm (ocaml-odoc): Update to 2.2.0-alpha.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
 2022-04-11 11:55:47 +02:00
Ludovic Courtès
f429596627
shepherd: 'fork+exec-command/container' always returns a PID. 
Fixes a regression introduced in
938448bf40 whereby
'fork+exec-command/container' would return #t, then used as the running
value of the 'guix-daemon' service in the installer.  Upon installation
completion, stopping the 'guix-daemon' service would fail with
wrong-type-arg because that #t would be passed to the 'stop' method in
lieu of a PID.

* gnu/build/shepherd.scm (fork+exec-command/container): Return a PID
rather than #t.
 2022-04-11 00:25:33 +02:00
Ludovic Courtès
ada530acb1
shepherd: 'exec-command*' has a valid default #:directory. 
Fixes a regression introduced in
938448bf40 where 'exec-command*' could
get #:directory #f, in particular when called by
'fork+exec-command/container'.

* gnu/build/shepherd.scm (exec-command*): Add default value for #:directory.
 2022-04-11 00:25:33 +02:00
Andrew Tropin
435e1cef00
home: symlink-manager: Handle non-existing directory during cleanup. 
* gnu/home/services/symlink-manager.scm (update-symlinks-script): Handle
non-existing directory during cleanup.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
 2022-04-11 00:25:33 +02:00
Andrew Tropin
ac8e987ce2
home: shells: Rename zsh related functions. 
* gnu/home/services/shells.scm (home-zsh-service-type): Make zsh related
private functions more consistently named.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
 2022-04-11 00:25:32 +02:00
Efraim Flashner
72abf9b9b8
gnu: jq: Only build with valgrind on supported systems. 
* gnu/packages/web.scm (jq)[native-inputs]: Only include valgrind on
systems which it supports.
 2022-04-10 20:49:34 +03:00
Efraim Flashner
96a132809f
gnu: smithwaterman: Fix cross-compiling. 
The 'ar' matched the 'ar' in 'aarch64-linux-gnu' to unfun consequences.

* gnu/packages/bioinformatics.scm (smithwaterman)[arguments]: More
closely match the 'ar' and 'ld' commands when substituting them.
 2022-04-10 20:49:33 +03:00
Guillaume Le Vaillant
81567f751b
gnu: llvm-3: Fix build. 
* gnu/packages/llvm.scm (llvm-3.9)[arguments]: Use gexp. Add
  'shared-lib-workaround' phase.

Co-authored-by: Maxime Devos <maximedevos@telenet.be>
 2022-04-10 19:22:43 +02:00
Leo Famulari
2299d2c896
gnu: linux-libre 5.10: Update to 5.10.110. 
* gnu/packages/linux.scm (linux-libre-5.10-version): Update to 5.10.110.
(linux-libre-5.10-pristine-source): Update hash.
 2022-04-10 01:18:04 -04:00
Leo Famulari
fec46d977a
gnu: linux-libre 5.15: Update to 5.15.33. 
* gnu/packages/linux.scm (linux-libre-5.15-version): Update to 5.15.33.
(linux-libre-5.15-pristine-source): Update hash.
 2022-04-10 01:18:04 -04:00
Leo Famulari
3d372cc2fe
gnu: linux-libre: Update to 5.16.19. 
* gnu/packages/linux.scm (linux-libre-5.16-version): Update to 5.16.19.
(linux-libre-5.16-pristine-source): Update hash.
 2022-04-10 01:18:04 -04:00
Leo Famulari
002928c663
gnu: linux-libre 5.17: Update to 5.17.2. 
* gnu/packages/linux.scm (linux-libre-5.17-version): Update to 5.17.2.
(linux-libre-5.17-pristine-source): Update hash.
 2022-04-10 01:17:58 -04:00
Michael Rohleder
d10cee7865
gnu: strawberry: Update to 1.0.3. 
* gnu/packages/music.scm (strawberry): Update to 1.0.3.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
 2022-04-10 00:17:41 +02:00
itd
b0d3f42372
gnu: efivar: Fix build errors on i686-linux. 
* gnu/packages/patches/efivar-211.patch: New patch.
* gnu/local.mk (dist_patch_DATA): Add it.
* gnu/packages/linux.scm (efivar)[source]<origin>: Use it.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
 2022-04-10 00:17:40 +02:00
Andrew Tropin
d6b9a3faa8
home: symlink-manager: Use no-follow version of file-exists?. 
* gnu/home/services/symlink-manager.scm (update-symlinks-script): Use
no-follow version of file-exists?.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
 2022-04-10 00:17:40 +02:00
Ludovic Courtès
eeb8ac43c8
services: shepherd: Do not unload transient services. 
Fixes <https://issues.guix.gnu.org/54812>.

Starting with Shepherd 0.9.0 and the use of 'make-inetd-constructor' in
commit 808b9e8504, systems might be
running transient Shepherd services such as those corresponding to SSH
connections.  Before this change, 'shepherd-service-upgrade' would have
those transient services in the list of services to unload; concretely,
that would lead all SSH connections to be closed upon 'guix system
reconfigure'.

* gnu/services/shepherd.scm (shepherd-service-upgrade): Remove transient
services to TO-UNLOAD.
 2022-04-10 00:17:40 +02:00
Ludovic Courtès
a2c759c830
services: herd: Report whether a service is transient. 
* gnu/services/herd.scm (<live-service>)[transient?]: New field.
(current-services): Check the value of 'transient?'.  Call
'resolve-transients'.
(resolve-transients): New procedure.
 2022-04-10 00:17:40 +02:00
Marius Bakke
975966ba09
gnu: Zabbix: Update to 6.0.3. 
* gnu/packages/monitoring.scm (zabbix-agentd): Update to 6.0.3.
 2022-04-09 16:09:50 +02:00
Marius Bakke
aa5716703f
gnu: ganeti: Update to 3.0.2. 
* gnu/packages/patches/ganeti-haskell-compat.patch,
gnu/packages/patches/ganeti-sphinx-compat.patch: Delete files.
* gnu/local.mk (dist_patch_DATA): Adjust accordingly.
* gnu/packages/virtualization.scm (ganeti): Update to 3.0.2.
[source](patches): Remove obsolete.
[arguments]: Remove obsolete phases.  Disable one more test.
 2022-04-09 14:27:43 +02:00
Marius Bakke
dce0249f18
gnu: ganeti: Fix test failure with PyYAML 6.0. 
This fixes a regression that was introduced in
27720d0fe1.

* gnu/packages/patches/ganeti-pyyaml-compat.patch: New file.
* gnu/local.mk (dist_patch_DATA): Adjust accordingly.
* gnu/packages/virtualization.scm (ganeti)[source](patches): Add it.
 2022-04-09 14:27:43 +02:00
Vagrant Cascadian
47b6451eb5
gnu: libxmlb: Update to 0.3.8. 
* gnu/packages/xlm.scm (libxmlb): Update to 0.3.8.
 2022-04-08 20:34:49 -07:00
Vagrant Cascadian
a720c900cc
gnu: reprotest: Update to 0.7.20. 
* gnu/packages/diffoscope.scm (reprotest): Update to 0.7.20.
 2022-04-08 15:32:34 -07:00
Vagrant Cascadian
55b5ad2eeb
gnu: diffoscope: Update to 209. 
* gnu/packages/diffoscope.scm (diffoscope): Update to 209.
 2022-04-08 15:32:31 -07:00
Ludovic Courtès
0996d48d0e
services: rottlog: Keep fewer "guix-daemon.log" files. 
* gnu/services/admin.scm (%default-rotations): For "guix-daemon.log",
add 'options' field.
 2022-04-09 00:30:40 +02:00
Olivier Dion
a62873af7c
gnu: emacs-geiser: Add dependency on Project. 
* gnu/packages/emacs-xyz.scm (emacs-geiser)[propagated-inputs]: Add
emacs-project.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
 2022-04-08 23:59:48 +02:00
Brian Kubisiak
1d0e57fab8
gnu: lsof: Fix invalid G-Expression. 
Cross-compiling lsof is failing with an "invalid G-expression input"
error. Fix this by using a quoted list.

* gnu/packages/lsof.scm (lsof): Fix invalid G-Expression.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
 2022-04-08 23:59:48 +02:00
Andrew Tropin
20645d8467
home: Add home-xdg-data-files-service-type. 
* gnu/home/services.scm (home-xdg-data-files-service-type): New variable.
* gnu/home/services/symlink-manager.scm (update-symlinks-script): Add a proper
handling for XDG_DATA_HOME value.
* gnu/home/services/xdg.scm (home-xdg-mime-applications-service-type): Use
home-xdg-data-files service.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
 2022-04-08 20:13:48 +02:00
Andrew Tropin
5832d9fb60
home: symlink-manager: Remove appending of leading dot. 
* gnu/home/services.scm (xdg-configuration-files-directory): Add leading dot.
* gnu/home/services.scm (xdg-configuration-files-service-type): Change name.
* gnu/home/services/shells.scm (add-shell-profile-file,
zsh-get-configuration-files, add-zsh-dot-configuration,
add-zsh-xdg-configuration, add-bash-configuration): Add leading dots.
* gnu/home/services/symlink-manager.scm (update-symlinks-script): Remove
leading dot.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
 2022-04-08 20:13:45 +02:00
Ludovic Courtès
f239b9d788
tests: Add "encrypted-home-os" installation test. 
* gnu/tests/install.scm (%encrypted-home-os)
(%encrypted-home-installation-script)
(enter-luks-passphrase-for-home)
(%test-encrypted-home-os): New variables.
 2022-04-08 18:14:35 +02:00
Ludovic Courtès
dcb0e54a4f
file-systems: Invoke fsck tools with 'system*/tty'. 
This ensures those programs, if invoked by shepherd (where standard
input is /dev/null), can still interact with the user if needed.

* gnu/build/file-systems.scm (check-ext2-file-system)
(check-bcachefs-file-system, check-btrfs-file-system):
(check-fat-file-system, check-jfs-file-system):
(check-f2fs-file-system, check-ntfs-file-system):
(check-xfs-file-system): Use 'system*/tty' instead of 'system*'.
 2022-04-08 18:14:35 +02:00
Ludovic Courtès
931f13840b
mapped-devices: Ensure 'cryptsetup open' gets a tty. 
Fixes <https://issues.guix.gnu.org/54770>.
Regression introduced in 400c9ed3d7.

Previously, for an encrypted /home (say), "cryptsetup open" would be
invoked by shepherd, with /dev/null as its standard input.  It would
thus run in non-interactive mode and, instead of asking for a
passphrase, fail with:

  Nothing to read on input.

This change ensures it runs in interactive mode.

* gnu/build/file-systems.scm (system*/console, system*/tty): New
procedures.
* gnu/system/mapped-devices.scm (open-luks-device): Use 'system*/tty'
instead of 'system*'.
 2022-04-08 18:14:35 +02:00
Ludovic Courtès
df473496ed
system: hurd: Fix bogus 'initrd-modules' field. 
Reported by kitzman on #guix.

* gnu/system/hurd.scm (%hurd-default-operating-system)[initrd-modules]:
Set to the empty list.
 2022-04-08 18:14:35 +02:00
Jonathan Brielmaier
09ec1d6561
gnu: icedove: Update to 91.8 [fixes CVE-2022-1197]. 
* gnu/packages/gnuzilla.scm (icedove): Update to 91.8.
 2022-04-08 16:00:23 +02:00
jgart
96bd801780
gnu: Add cl-jzon. 
* gnu/packages/lisp-xyz.scm (cl-jzon, ecl-jzon, sbcl-jzon): New variables.

Signed-off-by: Guillaume Le Vaillant <glv@posteo.net>
 2022-04-08 10:03:58 +02:00
jgart
b67c67b027
gnu: cl-cffi: Remove trailing boolean. 
* gnu/packages/lisp-xyz.scm (sbcl-cffi)[arguments]: Remove trailing boolean.

Signed-off-by: Guillaume Le Vaillant <glv@posteo.net>
 2022-04-08 09:53:37 +02:00
jgart
9919e423a7
gnu: cl-legit: Update to 1.0.0-2.5f8a2d4. 
* gnu/packages/lisp-xyz.scm (sbcl-legit): Update to 1.0.0-2.5f8a2d4 and use
  revision variable in let block.
  [arguments]: Add 'patch-git-executable' phase.
  [inputs]: Add formatting and add missing git input.

Signed-off-by: Guillaume Le Vaillant <glv@posteo.net>
 2022-04-08 09:50:53 +02:00
Marius Bakke
1d4f2cdc82
gnu: nginx: Build optimized binaries. 
* gnu/packages/web.scm (nginx)[arguments]: Add "-O2 -g" to CFLAGS.
 2022-04-07 23:12:44 +02:00
Marius Bakke
c9ce02ecff
gnu: nginx: Respect #:configure-flags. 
* gnu/packages/web.scm (nginx)[arguments]: Add #:configure-flags.  Move
default settings out of the 'configure' phase.
 2022-04-07 23:12:44 +02:00
Marius Bakke
4079cd9ba3
gnu: nginx: Use G-expressions. 
* gnu/packages/web.scm (nginx)[arguments]: Rewrite in gexp style.  Remove
trailing #t's.
 2022-04-07 23:12:44 +02:00
Marius Bakke
cee03495bf
gnu: uBlock Origin: Update to 1.42.4. 
* gnu/packages/browser-extensions.scm (ublock-origin): Update to 1.42.4.
 2022-04-07 23:12:44 +02:00
Marius Bakke
0b3f52051b
gnu: ungoogled-chromium: Update to 100.0.4896.75-1. 
* gnu/packages/chromium.scm (%preserved-third-party-files): Adjust for 100.
(%chromium-version): Set to 100.0.4896.75.
(%debian-revision): Set to debian/100.0.4896.60-1.
(%ungoogled-origin): Update hash.
(%debian-patches): Updates hashes.  Remove obsolete.
(ungoogled-chromium): Update hash.
[arguments]: Remove obsolete substitution.  Patch libvulkan.so.1 in more
files, and add absolute reference to Mesa ICDs.
 2022-04-07 23:12:44 +02:00
Marius Bakke
8e8b8ffdee
gnu: ungoogled-chromium: Update to 99.0.4844.84-1. 
* gnu/packages/chromium.scm (%preserved-third-party-files): Adjust for 99.
(%chromium-version): Set to 99.0.4844.84.
(%ungoogled-origin): Update hash.
(ungoogled-chromium): Likewise.
[arguments]: Patch absolute file names to GTK libraries.  Patch one more
Opus header inclusion.  Remove labels in wrapping phase.
[native-inputs]: Change from CLANG-13 to CLANG-14.
[inputs]: Add AT-SPI2-ATK.
 2022-04-07 23:12:44 +02:00
Marius Bakke
e9473ed49b
gnu: LLVM, Clang: Add 14.0.0. 
* gnu/packages/llvm.scm (%llvm-monorepo-hashes, %llvm-patches, llvm-monorepo):
New variables.
(clang-runtime-from-llvm): Make HASH optional; use monorepo when not present.
(clang-from-llvm): Likewise.
(llvm-14, clang-runtime-14, clang-14, clang-toolchain-14, lld-14): New variables.
(llvm-13): Inherit from LLVM-14.
(lld-13): Inherit from LLD-14.
(lld): Turn into alias for LLD-14.
* gnu/packages/patches/clang-14.0-libc-search-path.patch: New file.
* gnu/local.mk (dist_patch_DATA): Adjust accordingly.
* gnu/packages/zig.scm (zig): Change from LLD to LLD-13.
 2022-04-07 23:12:44 +02:00
Marius Bakke
4e4a79601c
gnu: radeontop: Simplify inputs. 
* gnu/packages/linux.scm (radeontop)[native-inputs]: Simplify.
 2022-04-07 23:12:44 +02:00
Malte Frank Gerdes
b749329888
gnu: Add cura. 
* gnu/packages/engineering.scm (cura): New variable.

Co-authored-by: Guillaume Le Vaillant <glv@posteo.net>
 2022-04-07 22:32:01 +02:00
Guillaume Le Vaillant
4926c10476
gnu: Add python-pynest2d. 
* gnu/packages/engineering.scm (python-pynest2d): New variable.
 2022-04-07 22:32:01 +02:00
Guillaume Le Vaillant
ace3a7ad89
gnu: Add libnest2d-for-cura. 
* gnu/packages/engineering.scm (libnest2d-for-cura): New variable.
 2022-04-07 22:32:01 +02:00
Malte Frank Gerdes
21594c06b1
gnu: Add libsavitar. 
* gnu/packages/engineering.scm (libsavitar): New variable.

Co-authored-by: Guillaume Le Vaillant <glv@posteo.net>
 2022-04-07 22:32:01 +02:00
Malte Frank Gerdes
79b50d5d5b
gnu: Add libcharon. 
* gnu/packages/engineering.scm (libcharon): New variable.

Co-authored-by: Guillaume Le Vaillant <glv@posteo.net>
 2022-04-07 22:32:01 +02:00
Malte Frank Gerdes
f14d43b367
gnu: Add uranium. 
* gnu/packages/engineering.scm (uranium): New variable.

Co-authored-by: Guillaume Le Vaillant <glv@posteo.net>
 2022-04-07 22:32:01 +02:00
Malte Frank Gerdes
b4b93035c1
gnu: Add python-trimesh. 
* gnu/packages/python-science.scm (python-trimesh): New variable.

Co-authored-by: Guillaume Le Vaillant <glv@posteo.net>
 2022-04-07 18:35:38 +02:00
Malte Frank Gerdes
504dd8b696
gnu: Add python-pyinstrument. 
* gnu/packages/python-check.scm (python-pyinstrument): New variable.

Co-authored-by: Guillaume Le Vaillant <glv@posteo.net>
 2022-04-07 18:35:38 +02:00
Malte Frank Gerdes
8d2493dda1
gnu: Add cura-binary-data. 
* gnu/packages/engineering.scm (cura-binary-data): New variable.

Co-authored-by: Guillaume Le Vaillant <glv@posteo.net>
 2022-04-07 15:54:02 +02:00
Malte Frank Gerdes
742a7d897f
gnu: Add cura-engine. 
* gnu/packages/engineering.scm (cura-engine): New variable.

Co-authored-by: Guillaume Le Vaillant <glv@posteo.net>
 2022-04-07 15:41:18 +02:00
Malte Frank Gerdes
390d68c956
gnu: Add libarcus. 
* gnu/packages/engineering.scm (libarcus): New variable.

Co-authored-by: Guillaume Le Vaillant <glv@posteo.net>
 2022-04-07 15:30:49 +02:00
André A. Gomes
7409f246e2
gnu: cl-slynk: Update to 1.0.43-6.4513c38. 
* gnu/packages/lisp-xyz.scm (sbcl-slynk): Update to 1.0.43-6.4513c38.

Signed-off-by: Guillaume Le Vaillant <glv@posteo.net>
 2022-04-07 13:38:00 +02:00
André A. Gomes
68d7471cbd
gnu: emacs-sly: Update to 1.0.43-6.4513c38. 
* gnu/packages/emacs-xyz.scm (emacs-sly): Update to 1.0.43-6.4513c38.

Signed-off-by: Guillaume Le Vaillant <glv@posteo.net>
 2022-04-07 13:34:45 +02:00
Peter Polidoro
90b5353132
gnu: kicad: Update to 6.0.4. 
* gnu/packages/engineering.scm (kicad, kicad-doc, kicad-symbols,
  kicad-footprints, kicad-packages3d, kicad-templates): Update to 6.0.4.

Signed-off-by: Guillaume Le Vaillant <glv@posteo.net>
 2022-04-07 11:11:14 +02:00
jgart
b94b334cb7
gnu: cl-sxql: Update to 0.1.0-3.cc3478c. 
* gnu/packages/lisp-xyz.scm (sbcl-sxql): Update to 0.1.0-3.cc3478c and use
  revision variable in let block.
  [inputs]: Add missing sbcl-trivia input.

Signed-off-by: Guillaume Le Vaillant <glv@posteo.net>
 2022-04-07 10:23:15 +02:00
Ludovic Courtès
28b3763e33
secret-service: Allow cooperative scheduling when Fibers is used. 
This lets the 'childhurd' service start in the background, letting
shepherd perform other tasks in the meantime, including serving
clients (such as the 'herd' command).

* gnu/build/secret-service.scm (with-modules): New macro.
(wait-for-readable-fd): Add cooperative implementation when Fibers is in
use.
(secret-service-send-secrets): Define 'sleep' so that it cooperates when
Fibers is in use.
 2022-04-07 00:08:56 +02:00
Ludovic Courtès
83121aa85a
secret-service: Abstract 'wait-for-readable-fd'. 
* gnu/build/secret-service.scm (wait-for-readable-fd): New procedure.
(secret-service-send-secrets): Use it instead of 'select'.
 2022-04-07 00:08:56 +02:00
Ludovic Courtès
808b9e8504
services: openssh: Start as an inetd service. 
* gnu/services/ssh.scm (openssh-shepherd-service): Use
'make-inetd-constructor' when it is defined.
(<openssh-configuration>)[max-connections]: New field.
* gnu/tests/ssh.scm (run-ssh-test)["sshd PID"]: Adjust to cope with
PID-FILE being #f.
* gnu/tests/ssh.scm (%test-openssh): Pass #f as the 'pid-file'
argument.
* doc/guix.texi (Networking Services): Document 'max-connections'.
 2022-04-07 00:08:56 +02:00
Ludovic Courtès
22ab901466
home: shepherd: Default to version 0.9. 
* gnu/home/services/shepherd.scm (<home-shepherd-configuration>)[shepherd]:
Default to SHEPHERD-0.9.
(home-shepherd-configuration-file): Use 'start-in-the-background' when
it is defined.
 2022-04-07 00:08:56 +02:00
Ludovic Courtès
400c9ed3d7
services: shepherd: Default to version 0.9. 
* gnu/services/shepherd.scm (scm->go): Define 'shepherd&co' and pass it
to 'with-extensions'.
(shepherd-configuration-file): Call 'start-in-the-background' when it is
defined.
(<shepherd-configuration>)[shepherd]: Default to SHEPHERD-0.9.
* gnu/system.scm (hurd-default-essential-services): Use SHEPHERD-0.8.
 2022-04-07 00:08:56 +02:00
Ludovic Courtès
938448bf40
shepherd: Adjust 'fork+exec-command/container' for the Shepherd 0.9. 
* gnu/build/shepherd.scm (exec-command*): New procedure, with code
formerly...
(make-forkexec-constructor/container): ... here.  Use it.
(fork+exec-command/container): Use 'fork+exec-command' only when
CONTAINER-SUPPORT? is false or PID is the current process.
 2022-04-07 00:08:55 +02:00
Ludovic Courtès
d4172babe0
gnu: shepherd: Add 0.9.0. 
* gnu/packages/admin.scm (shepherd): Rename to...
(shepherd-0.8): ... this.  New variable.
(shepherd): Define as an alias for SHEPHERD-0.8.
(shepherd-0.9): New variable.
(guile2.2-shepherd): Inherit from SHEPHERD-0.9 and adjust inputs
accordingly.
 2022-04-07 00:08:55 +02:00
Efraim Flashner
aacd44278b
gnu: lagrange: Update to 1.12.1. 
* gnu/packages/web-browsers.scm (lagrange): Update to 1.12.1.
 2022-04-06 23:33:28 +03:00
Efraim Flashner
00ce149606
gnu: keepassxc: Update to 2.7.1. 
* gnu/packages/password-utils.scm (keepassxc): Update to 2.7.1.
 2022-04-06 23:31:22 +03:00
Efraim Flashner
3ac90f92a0
gnu: vim: Update to 8.2.4701. 
* gnu/packages/vim.scm (vim): Update to 8.2.4701.
[arguments]: Adjust custom 'skip-or-fix-failing-tests phase to skip
another test.
 2022-04-06 22:57:48 +03:00
Mathieu Othacehe
c2125e59d0
installer: user: Remove useless filtering. 
* gnu/installer/user.scm (users->configuration): Remove root account filtering
that is now performed in the "run-user-add-page" procedure.
 2022-04-06 21:19:08 +02:00
Mathieu Othacehe
2bfb27af56
installer: user: Forbid root user creation. 
Forbid root user creation as it could lead to a system without any
non-priviledged user accouts.

Fixes: <https://issues.guix.gnu.org/54666>.

* gnu/installer/newt/user.scm (run-user-add-page): Forbid it.
 2022-04-06 21:19:07 +02:00
Ricardo Wurmus
3b262b51fa
gnu: python-pybtex: Update to 0.24.0. 
* gnu/packages/python-xyz.scm (python-pybtex): Update to 0.24.0.
[native-inputs]: Remove python-nose; add python-pytest.
[inputs]: Move python-latexcodec, python-pyyaml, and python-six from here...
[propagated-inputs]: ...to here.
[arguments]: Use pytest.
 2022-04-06 12:37:33 +02:00
Ricardo Wurmus
e1df15794b
gnu: python-latexcodec: Update to 2.0.1. 
* gnu/packages/python-xyz.scm (python-latexcodec): Update to 2.0.1.
[inputs]: Move python-six from here...
[propagated-inputs]: ...to here.
 2022-04-06 12:37:10 +02:00
Hong Li
e3e3381fdb
gnu: Add r-rnaseqdtu. 
* gnu/packages/bioinformatics.scm (r-rnaseqdtu): New variable.

Signed-off-by: Ricardo Wurmus <rekado@elephly.net>
 2022-04-06 11:43:46 +02:00
Hong Li
730ac9ab85
gnu: Add r-stager. 
* gnu/packages/bioconductor.scm (r-stager): New variable.

Signed-off-by: Ricardo Wurmus <rekado@elephly.net>
 2022-04-06 11:43:46 +02:00
Hong Li
a8182f386e
gnu: Add r-rafalib. 
* gnu/packages/cran.scm (r-rafalib): New variable.

Signed-off-by: Ricardo Wurmus <rekado@elephly.net>
 2022-04-06 11:43:46 +02:00
Mark H Weaver
3b3cc9dfed
gnu: icecat: Update to 91.8.0-guix0-preview1 [security fixes]. 
Includes fixes for CVE-2022-1097, CVE-2022-1196, CVE-2022-24713,
CVE-2022-28281, CVE-2022-28282, CVE-2022-28285, CVE-2022-28286, and
CVE-2022-28289.

* gnu/packages/gnuzilla.scm (%icecat-version, %icecat-build-id): Update.
(icecat-source): Update gnuzilla commit, base version, and hashes.
 2022-04-05 18:12:15 -04:00
Liliana Marie Prikler
4bfb75531c
gnu: poco: Make description a full sentence. 
* gnu/packages/cpp.scm (poco)[description]: Expand into a full sentence.
 2022-04-05 21:17:59 +02:00
Ricardo Wurmus
d643ef38ed
gnu: u-boot-rockpro64-rk3399: Add support for booting from SCSI/SATA. 
* gnu/packages/bootloaders.scm (u-boot-rockpro64-rk3399)[arguments]: Add
  'patch-config phase to support SCSI/SATA disks.

Signed-off-by: Vagrant Cascadian <vagrant@debian.org>
 2022-04-05 12:05:28 -07:00
Vagrant Cascadian
4a0d045990
gnu: u-boot: Update to 2022.04. 
* gnu/packages/bootloaders.scm (u-boot): Update to 2022.01.
  [native-inputs]: Add gnutls, tinfo, libuuid.
  (u-boot-qemu-riscv64-smode): Drop custom
  patches.
* gnu/packages/patches/u-boot-allow-disabling-openssl.patch: Refresh patch.
* gnu/packages/patches/u-boot-riscv64-fix-extlinux.patch: Remove patch,
  applied upstream.
* gnu/local.mk (dist_patch_DATA): Update with removed patches.

Co-authored-by: Ricardo Wurmus <rekado@elephly.net>
 2022-04-05 12:05:22 -07:00
Vagrant Cascadian
20302e0b16
gnu: Add ncurses-with-tinfo. 
* gnu/packages/ncurses.scm (ncurses/tinfo): New variable.
 2022-04-05 12:05:19 -07:00
Andrew Tropin
e777c3e34c
gnu: l2md: Update to 9db252bc. 
[[PGP Signed Part:No public key for 2208D20958C1DEB0 created at 2022-03-28T11:03:48+0200 using RSA]]

* gnu/packages/mail.scm (l2md): Update to 9db252bc.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
 2022-04-05 20:41:41 +02:00
Attila Lendvai
9ef6d80ef4
services: messaging: Fix two copy-paste mistakes; avoid warnings. 
* gnu/services/messaging.scm (file-name-list, file-object-list): Fix
name in 'define-maybe' instances.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
 2022-04-05 20:41:41 +02:00
ykonai
84e0cbbc9c
gnu: plocate: Build with "--sharedstatedir=/var". 
Current plocate package sets the --sharedstatedir to a store directory, which
causes updatedb and plocate to fail by default since the store is immutable.
This will set the default database path to /var/cache/plocate.db instead.

* gnu/packages/search.scm (plocate): Change build options.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
 2022-04-05 20:41:41 +02:00
Leo Nikkilä
d15a601a85
gnu: phodav: Use libsoup 2 instead of libsoup 3. 
Looks like phodav requires libsoup 2. Example of failing build logs,
wanting libsoup 2.4: <https://ci.guix.gnu.org/build/584454/log/raw>

After swapping the dependency, tests were failing due to HOME not being
writable. I added a new build phase to account for this. I also removed
the start-virtual-dir-server phase which no longer seems required, the
tests pass without it.

* gnu/packages/gnome.scm (phodav): Fix build, tests.
[inputs]: Replace libsoup 3 with libsoup 2.
[arguments]<#:phases>[set-temporary-home]: New phase.
[arguments]<#:phases>[start-virtual-dir-server]: Remove phase.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
 2022-04-05 20:41:40 +02:00
jgart
86ee397e26
gnu: pantheon-calculator: Update to 1.7.2. 
* gnu/packages/pantheon.scm (pantheon-calculator): Update to 1.7.2.
[arguments]: Remove trailing boolean.
[inputs]: Use guix style and add libhandy input.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
 2022-04-05 20:41:40 +02:00
Felix Gruber
c9cca908fa
gnu: python-w3lib: Fix build. 
* gnu/packages/python-web.scm (python-w3lib): Fix build.
  [source]: Add python-w3lib-fix-test-failure.patch.
  [arguments]: Use pytest in the 'check phase.
  [native-inputs]: Add python-pytest.
* gnu/packages/patches/python-w3lib-fix-test-failure.patch: New file.
* gnu/local.mk (dist_patch_DATA): Add it.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
 2022-04-05 20:41:40 +02:00
Zhu Zihao
27a6e8501f
gnu: python-gst: Fix the concatenation of install path. 
Fixes a regression introduced in a5c2e7961c.

* gnu/packages/gstreamer.scm (python-gst):
[arguments]:
<configure-flags>: Add missing leading slash.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
 2022-04-05 20:41:40 +02:00
jgart
9d25dab4db
gnu: python-dotenv: Update to 0.20.0. 
* gnu/packages/python-xyz.scm (python-dotenv): Update to 0.20.0.
[home-page]: Update home page.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
 2022-04-05 20:41:40 +02:00
antlers
0748d3febd
gnu: linux: Allow kconfig options to be strings 
* gnu/packages/linux.scm (config->string): add a clause handling strings

Allows for the declarative configuration of kconfig options which accept
strings, such as CONFIG_MODULE_SIG_KEY.

I've enclosed the given string in quotes, but don't do any kind of
escaping. See the kernel mailing list for the current state of escaped
strings upstream:

https://patchwork.kernel.org/project/linux-kbuild/patch/1431003982-992-1-git-send-email-sr@denx.de/

Apologies to those with double-quotes or backslashes in their
CONFIG_SYSTEM_*_KEYS.

Signed-off-by: antlers <autumnalantlers@gmail.com>
Signed-off-by: Ludovic Courtès <ludo@gnu.org>
 2022-04-05 20:41:40 +02:00
Michael Rohleder
3e599b99da
gnu: celluloid: Update to 0.23. 
* gnu/packages/video.scm (celluloid): Update to 0.23.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
 2022-04-05 20:41:39 +02:00
Imran Iqbal
1fed7ab09e
gnu: curlie: Update to 1.6.9 
* gnu/packages/curl.scm (curlie): Update to 1.6.9

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
 2022-04-05 20:41:39 +02:00
Daniel Meißner
2a70e7922c
gnu: xmonad-next: Change #:phases to gexp. 
* gnu/packages/wm.scm (xmonad-next)[arguments]: Use #$output, #$name
and #$synopsis instead of %output, name and synopsis.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
 2022-04-05 20:41:39 +02:00
Ricardo Wurmus
66177c2b87
Merge branch 'wip-pyyaml' 2022-04-05 19:03:57 +02:00
Ricardo Wurmus
df2dc0c416
gnu: pigx-scrnaseq: Set NUMBA_CACHE_DIR. 
This is needed since the update of python-loompy.

* gnu/packages/bioinformatics.scm (pigx-scrnaseq)[arguments]: Rename
'set-PYTHONPATH to 'set-additional-environment-variables and set
NUMBA_CACHE_DIR.
 2022-04-05 18:40:48 +02:00
Ricardo Wurmus
e721122069
gnu: pigx-scrnaseq: Use new inputs style. 
* gnu/packages/bioinformatics.scm (pigx-scrnaseq)[inputs]: Use plain list.
 2022-04-05 18:40:48 +02:00
Ricardo Wurmus
5d1c9fcdcf
gnu: pigx-scrnaseq: Update to 1.1.8. 
* gnu/packages/bioinformatics.scm (pigx-scrnaseq): Update to 1.1.8.
[patches]: Remove.
[native-inputs]: Remove.
* gnu/packages/patches/pigx-scrnaseq-no-citeproc.patch: Remove file.
* gnu/local.mk (dist_patch_DATA): Remove it.
 2022-04-05 18:40:48 +02:00
Ricardo Wurmus
860010ac2a
gnu: r-with-tests: Update to 4.1.3. 
* gnu/packages/statistics.scm (r-with-tests): Update to 4.1.3.
 2022-04-05 15:14:41 +02:00
Greg Hogan
78e8c20179
gnu: git: Update to 2.35.1. 
* gnu/packages/version-control.scm (git): Update to 2.35.1.

Signed-off-by: Maxim Cournoyer <maxim.cournoyer@gmail.com>
 2022-04-05 08:48:47 -04:00
Maxim Cournoyer
8a9bf794e1
Revert "gnu: git: Update to 2.35.1." 
This reverts commit 223a3d7f7f, as it triggered
thousands of rebuilds due to inadvertently touching git-minimal/fixed.

Reported-by: Christopher Baines <mail@cbaines.net>
 2022-04-05 08:41:36 -04:00
Ricardo Wurmus
27720d0fe1
gnu: python-pyyaml: Update to 6.0. 
* gnu/packages/python-xyz.scm (python-pyyaml): Update to 6.0.
 2022-04-05 10:56:28 +02:00
Ricardo Wurmus
d3e1a94391
gnu: python2-pyyaml: Detach source from python-pyyaml. 
* gnu/packages/python-xyz.scm (python2-pyyaml): Override source and version
fields.
(python-pyyaml)[properties]: Add python2-variant.
 2022-04-05 10:56:23 +02:00
Leo Famulari
20303c0b1c
gnu: eyeD3: Update to 0.9.6. 
* gnu/packages/mp3.scm (eyed3): Update to 0.9.6.
[propagated-inputs]: Add python-deprecation and python-filetype.
 2022-04-04 19:57:12 -04:00
Ludovic Courtès
f54f2aa9df
packages: Add 'package-unique-version-prefix'. 
* gnu/packages.scm (package-unique-version-prefix): New procedure.
* guix/scripts/package.scm (manifest-entry-version-prefix): Use it.
* tests/packages.scm ("package-unique-version-prefix, gcc@8")
("package-unique-version-prefix, grep"): New tests.
 2022-04-04 22:58:03 +02:00
Feng Shu
4b451813f7
gnu: Add parole. 
* gnu/packages/xfce.scm (parole): New variable.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
 2022-04-04 22:58:03 +02:00