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44811 Commits

Author SHA1 Message Date
Tobias Geerinckx-Rice
ce63a3b90a
gnu: libgig: Update to 4.2.0. 
* gnu/packages/music.scm (libgig): Update to 4.2.0.
 2019-12-04 23:10:21 +01:00
Tobias Geerinckx-Rice
29a87ed18c
gnu: imapfilter: Update to 2.6.16. 
* gnu/packages/mail.scm (imapfilter): Update to 2.6.16.
[arguments]: Remove ‘fix-include-path’ phase.
 2019-12-04 23:10:21 +01:00
Tobias Geerinckx-Rice
8f15c1c9fe
gnu: mpop: Update to 1.4.6. 
* gnu/packages/mail.scm (mpop): Update to 1.4.6.
 2019-12-04 23:10:21 +01:00
Tobias Geerinckx-Rice
f3d4015385
gnu: girara: Fetch sources from git. 
The tarball URI is having server issues.  Use the upstream git
repository instead until this is resolved.

Reported by Marius Bakke <mbakke@fastmail.com>.

* gnu/packages/gtk.scm (girara)[source]: Switch to GIT-FETCH.
 2019-12-04 23:10:21 +01:00
Pierre Neidhardt
6b84a31d90
gnu: emacs-org-contrib: Fix build. 
* gnu/packages/emacs-xyz.scm (emacs-org-contrib): Refer to the updated
installation directory.
 2019-12-04 22:29:38 +01:00
Pierre Neidhardt
e18aeb416d
gnu: emacs-scel: Fix build. 
* gnu/packages/emacs-xyz.scm (emacs-scel): Refer to the updated installation
directory.
 2019-12-04 22:29:38 +01:00
Leo Famulari
c63d4725d1
gnu: knot: Update to 2.9.1 [fixes CVE-2019-19331]. 
* gnu/packages/dns.scm (knot): Update to 2.9.1.
 2019-12-04 16:09:20 -05:00
Pierre Neidhardt
1cd9149938
gnu: notmuch: Fix build. 
* gnu/packages/mail.scm (notmuch): Refer to the updated installation
directory.
 2019-12-04 21:57:12 +01:00
Marius Bakke
66c15f72f8
gnu: ffmpeg: Update to 3.4.7. 
* gnu/packages/video.scm (ffmpeg-3.4): Update to 3.4.7.
 2019-12-04 21:26:56 +01:00
Marius Bakke
63e8df382f
gnu: feh: Update to 3.3. 
* gnu/packages/patches/feh-fix-tests-for-imlib2-1.6.patch: Delete file.
* gnu/local.mk (dist_patch_DATA): Adjust accordingly.
* gnu/packages/image-viewers.scm (feh): Update to 3.3.
[source](patches): Remove.
 2019-12-04 21:26:50 +01:00
Marius Bakke
33b59c1a3e
Merge branch 'staging' 2019-12-04 20:12:41 +01:00
Marius Bakke
936aa05209
gnu: Remove duplicate nlohmann-json-cpp package. 
* gnu/packages/serialization.scm (nlohmann-json-cpp): Move variable ...
* gnu/packages/cpp.scm (nlohmann-json-cpp): ... here.  Mark as deprecated by
JSON-MODERN-CXX.
* gnu/packages/jupyter.scm (xeus)[inputs]: Change NLOHMANN-JSON-CPP to
JSON-MODERN-CXX.
* gnu/packages/video.scm (mkvtoolnix)[inputs]: Likewise.
 2019-12-04 20:10:34 +01:00
Danny Milosavljevic
208e743415
gnu: sunxi-tools: Simplify build. 
* gnu/packages/admin.scm (sunxi-tools-source): New procedure.
(sunxi-target-tools): New variable.
(sunxi-tools)[source]: Use sunxi-tools-source.
[native-inputs]: Remove cross-gcc, cross-libc, cross-libc-static.
Add sunxi-target-tools.
[arguments]<#:make-flags>: Modify.
[arguments]<#:phases>[set-environment-up]: Delete phase.
[build-armhf]: Delete phase.
[install]: Modify.
 2019-12-04 18:56:31 +01:00
Ludovic Courtès
ed15dfcf31
machine: ssh: <machine-ssh-configuration> can include the host key. 
* gnu/machine/ssh.scm (<machine-ssh-configuration>)[host-key]: New field.
(machine-ssh-session): Pass #:host-key to 'open-ssh-session'.
* doc/guix.texi (Invoking guix deploy): Document it.
 2019-12-04 18:16:08 +01:00
Timotej Lazar
d75540473f
gnu: bitlbee: Use Python 3. 
* gnu/packages/messaging.scm (bitlbee)[inputs]: Replace python-2 with python.
[arguments]: Set the PYTHON environment variable before configuring.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
 2019-12-04 18:16:08 +01:00
Leo Prikler
fe7b59c6b1
services: Add GNOME Keyring service. 
* gnu/services/desktop.scm: (<gnome-keyring-configuration>): New record type.
(pam-gnome-keyring): New procedure.
(gnome-keyring-service-type): New variable.
* doc/guix.texi (Desktop Services): Document it.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
 2019-12-04 18:16:08 +01:00
Leo Famulari
8548b3dd87
gnu: ncmpc: Update to 0.36. 
* gnu/packages/mpd.scm (ncmpc): Update to 0.36.
 2019-12-04 10:20:28 -05:00
Leo Famulari
e71513f74b
gnu: MPD: Update to 0.21.16. 
* gnu/packages/mpd.scm (mpd): Update to 0.21.16.
 2019-12-04 10:20:24 -05:00
Leo Famulari
d9447779c7
gnu: tmux: Update to 3.0a. 
* gnu/packages/tmux.scm (tmux): Update to 3.0a.
 2019-12-04 08:33:31 -05:00
Leo Famulari
1a7633c239
services: SSH services: Provide 'ssh' and 'sshd' Shepherd services. 
* gnu/services/ssh.scm (lsh-shepherd-service, dropbear-shepherd-service,
openssh-sheperd-service): Add 'ssh' and 'sshd' to provision.
 2019-12-04 08:31:39 -05:00
Mark H Weaver
34369f3103
gnu: icecat: Update to 68.3.0-guix0-preview1 [security fixes]. 
Includes fixes for CVE-2019-11745, CVE-2019-17005, CVE-2019-17008,
CVE-2019-17009, CVE-2019-17010, CVE-2019-17011, and CVE-2019-17012.

* gnu/packages/patches/icecat-gnuzilla-fixes.patch: Delete file.
* gnu/local.mk (dist_patch_DATA): Remove it.
* gnu/packages/gnuzilla.scm (%icecat-version, %icecat-build-id): Update.
(icecat-source): Update hash for the firefox source tarball.  Update to the
latest from gnuzilla.git.  Don't apply icecat-gnuzilla-fixes.patch.  Remove
determinism fix in makeicecat that is now upstream.  Tweak a status message.
(icecat)[arguments]: Add "--with-unsigned-addon-scopes=app" configure flag.
* gnu/packages/patches/icecat-makeicecat.patch: Adapt.
 2019-12-04 06:36:45 -05:00
Clément Lassieur
269c827c69
gnu: emacs-transient: Refer to the updated installation directory. 
* gnu/packages/emacs-xyz.scm (emacs-transient)[arguments]: Refer to the
updated installation directory.
 2019-12-04 12:13:16 +01:00
Efraim Flashner
8f523eb99d
gnuL librsvg-next: Unvendor some rust crates. 
* gnu/packages/gnome.scm (computed-origin-method, librsvg-next-source):
New variables.
(librsvg-next)[source]: Use computed librsvg-next-source.
[arguments]: Import %cargo-build-modules. Enable 'patch-source-shebangs,
'patch-generated-source-shebangs, 'patch-user-bin-file phases. Change
custom phase to patch cargo checksums and Cargo.lock.
 2019-12-04 12:32:40 +02:00
Maxim Cournoyer
4c503ed503
gnu: emacs-emacsql: Fix build. 
* gnu/packages/emacs-xyz.scm (emacs-emacsql): Refer to the updated
installation directory.

Signed-off-by: Clément Lassieur <clement@lassieur.org>
 2019-12-04 11:06:49 +01:00
Maxim Cournoyer
7185a8dac4
gnu: emacs-ert-runner: Fix build. 
* gnu/packages/emacs-xyz.scm (emacs-ert-runner): Refer to the updated
installation directory.

Signed-off-by: Clément Lassieur <clement@lassieur.org>
 2019-12-04 11:06:49 +01:00
Maxim Cournoyer
903765f0d9
gnu: emacs: Use load-path instead of EMACSLOADPATH. 
This enables the use of the subdirs.el feature of Emacs, where specifying a
directory in EMACSLOADPATH translates into a `load-path' variable containing
the directory and all its sub-directories.

* gnu/packages/aux-files/emacs/guix-emacs.el (guix-emacs-autoload-packages):
Use `load-path' directly instead of parsing EMACSLOADPATH.

Reported-by: Leo Prikler <leo.prikler@student.tugraz.at>
Signed-off-by: Clément Lassieur <clement@lassieur.org>
 2019-12-04 11:06:49 +01:00
Maxim Cournoyer
c320acd633
gnu: emacs: Fix guix-emacs.el indentation. 
* gnu/packages/aux-files/emacs/guix-emacs.el: Fix indentation.

Signed-off-by: Clément Lassieur <clement@lassieur.org>
 2019-12-04 11:06:49 +01:00
Maxim Cournoyer
9aca5ceac8
gnu: emacs: Simplify the EMACSLOADPATH search path specification. 
The EMACSLOADPATH can be greatly simplified by relying on a subdirs.el file
that causes Emacs to search recursively a directory found in EMACSLOADPATH.

* gnu/packages/emacs.scm (emacs)[native-search-paths]: Remove the match-all
file pattern regexp.  Remove the versioned site-lisp directory from searched
files, as it appears unused by Emacs.

Reported-by: Leo Prikler <leo.prikler@student.tugraz.at>
Signed-off-by: Clément Lassieur <clement@lassieur.org>
 2019-12-04 11:06:49 +01:00
Ricardo Wurmus
6ea613ce63
gnu: r-catterplots: Update to 0-3.ae17cd5. 
* gnu/packages/statistics.scm (r-catterplots): Update to 0-3.ae17cd5.
 2019-12-04 10:07:50 +01:00
Efraim Flashner
9e21a1c803
gnu: hexchat: Fix up inputs. 
* gnu/packages/messaging.scm (hexchat)[inputs]: Move glib:bin ...
[native-inputs]: ... to here.
 2019-12-04 10:56:04 +02:00
Efraim Flashner
5045821e2a
gnu: ocaml-gen: Don't use unstable tarball. 
* gnu/packages/ocaml.scm (ocaml-gen)[source]: Download using git-fetch.
 2019-12-04 10:55:29 +02:00
Efraim Flashner
0f4f5715a4
gnu: p7zip: Move *asm inputs to native-inputs. 
* gnu/packages/compression.scm (p7zip)[inputs]: Move yasm, nasm ...
[native-inputs]: ... to here.
 2019-12-04 10:55:28 +02:00
Efraim Flashner
bcda07797a
gnu: lablgtk: Use a source file-name. 
* gnu/packages/ocaml.scm (lablgtk)[source]: Add 'file-name'.
 2019-12-04 10:55:28 +02:00
Ricardo Wurmus
e21b668e52
gnu: r-rversions: Update to 2.0.1. 
* gnu/packages/statistics.scm (r-rversions): Update to 2.0.1.
 2019-12-04 09:39:43 +01:00
Ricardo Wurmus
14ebd6f762
gnu: r-survival: Update to 3.1-8. 
* gnu/packages/statistics.scm (r-survival): Update to 3.1-8.
 2019-12-04 09:39:36 +01:00
Ricardo Wurmus
41728d234b
gnu: r-all: Use bioconductor-uri. 
* gnu/packages/bioconductor.scm (r-all)[source]: Use bioconductor-uri.
 2019-12-04 09:36:34 +01:00
Ricardo Wurmus
545e67ac03
gnu: r-hsmmsinglecell: Use bioconductor-uri. 
* gnu/packages/bioconductor.scm (r-hsmmsinglecell)[source]: Use
bioconductor-uri.
 2019-12-04 09:36:15 +01:00
Ricardo Wurmus
b86f77469b
gnu: r-arrmdata: Use bioconductor-uri. 
* gnu/packages/bioconductor.scm (r-arrmdata)[source]: Use bioconductor-uri.
 2019-12-04 09:35:59 +01:00
Ricardo Wurmus
ced61edf5d
gnu: r-abadata: Use bioconductor-uri. 
* gnu/packages/bioconductor.scm (r-abadata)[source]: Use bioconductor-uri.
 2019-12-04 09:35:44 +01:00
Ricardo Wurmus
eed2766a45
gnu: r-do-db: Use bioconductor-uri. 
* gnu/packages/bioconductor.scm (r-do-db)[source]: Use bioconductor-uri.
 2019-12-04 09:35:26 +01:00
Ricardo Wurmus
25f567a85a
gnu: r-illuminahumanmethylationepicmanifest: Use bioconductor-uri. 
* gnu/packages/bioconductor.scm (r-illuminahumanmethylationepicmanifest)[source]:
Use bioconductor-uri.
 2019-12-04 09:35:08 +01:00
Ricardo Wurmus
6aca4054e0
gnu: r-fdb-infiniummethylation-hg19: Use bioconductor-uri. 
* gnu/packages/bioconductor.scm (r-fdb-infiniummethylation-hg19)[source]: Use
bioconductor-uri.
 2019-12-04 09:34:47 +01:00
Ricardo Wurmus
c271d99025
gnu: r-txdb-mmusculus-ucsc-mm10-knowngene: Use bioconductor-uri. 
* gnu/packages/bioconductor.scm (r-txdb-mmusculus-ucsc-mm10-knowngene)[source]:
Use bioconductor-uri.
[arguments]: Enable substitution.
 2019-12-04 09:34:13 +01:00
Ricardo Wurmus
1afdf41b49
gnu: r-txdb-mmusculus-ucsc-mm9-knowngene: Use bioconductor-uri. 
* gnu/packages/bioconductor.scm (r-txdb-mmusculus-ucsc-mm9-knowngene)[source]:
Use bioconductor-uri.
 2019-12-04 09:33:54 +01:00
Ricardo Wurmus
d78db08862
gnu: r-txdb-hsapiens-ucsc-hg38-knowngene: Use bioconductor-uri. 
* gnu/packages/bioconductor.scm (r-txdb-hsapiens-ucsc-hg38-knowngene)[source]:
Use bioconductor-uri.
 2019-12-04 09:33:35 +01:00
Ricardo Wurmus
f2580a1385
gnu: r-txdb-hsapiens-ucsc-hg19-knowngene: Use bioconductor-uri. 
* gnu/packages/bioconductor.scm (r-txdb-hsapiens-ucsc-hg19-knowngene)[source]:
Use bioconductor-uri.
[arguments]: Enable substitution.
 2019-12-04 09:33:09 +01:00
Ricardo Wurmus
717d7cda9d
gnu: r-genelendatabase: Use bioconductor-uri. 
* gnu/packages/bioconductor.scm (r-genelendatabase)[source]: Use
bioconductor-uri.
 2019-12-04 09:32:48 +01:00
Ricardo Wurmus
e7a8cf2e6e
gnu: r-bsgenome-hsapiens-ucsc-hg19: Use bioconductor-uri. 
* gnu/packages/bioconductor.scm (r-bsgenome-hsapiens-ucsc-hg19)[source]:
Use bioconductor-uri.
[arguments]: Enable substitution.
 2019-12-04 09:32:22 +01:00
Ricardo Wurmus
411be88bf3
gnu: r-org-mm-eg-db: Use bioconductor-uri. 
* gnu/packages/bioconductor.scm (r-org-mm-eg-db)[source]: Use
bioconductor-uri.
 2019-12-04 09:32:03 +01:00
Ricardo Wurmus
f53becc6d8
gnu: r-org-hs-eg-db: Use bioconductor-uri. 
* gnu/packages/bioconductor.scm (r-org-hs-eg-db)[source]: Use
bioconductor-uri.
 2019-12-04 09:31:46 +01:00
Ricardo Wurmus
7bb65a2227
gnu: r-org-dr-eg-db: Use bioconductor-uri. 
* gnu/packages/bioconductor.scm (r-org-dr-eg-db)[source]: Use
bioconductor-uri.
 2019-12-04 09:31:19 +01:00
Ricardo Wurmus
b0dfc79b0d
gnu: r-org-dm-eg-db: Use bioconductor-uri. 
* gnu/packages/bioconductor.scm (r-org-dm-eg-db)[source]: Use
bioconductor-uri.
 2019-12-04 09:30:58 +01:00
Ricardo Wurmus
1c05e637a4
gnu: r-org-ce-eg-db: Use bioconductor-uri. 
* gnu/packages/bioconductor.scm (r-org-ce-eg-db)[source]: Use
bioconductor-uri.
 2019-12-04 09:30:35 +01:00
Ricardo Wurmus
f83404bc5b
gnu: r-bsgenome-mmusculus-ucsc-mm10: Use bioconductor-uri. 
* gnu/packages/bioconductor.scm (r-bsgenome-mmusculus-ucsc-mm10)[source]:
Use bioconductor-uri.
[arguments]: Enable substitution.
 2019-12-04 09:29:56 +01:00
Ricardo Wurmus
51dc4a2d70
gnu: r-bsgenome-mmusculus-ucsc-mm9-masked: Use bioconductor-uri. 
* gnu/packages/bioconductor.scm (r-bsgenome-mmusculus-ucsc-mm9-masked)[source]:
Use bioconductor-uri.
 2019-12-04 09:29:26 +01:00
Ricardo Wurmus
21f6dae73d
gnu: r-bsgenome-mmusculus-ucsc-mm9: Use bioconductor-uri. 
* gnu/packages/bioconductor.scm (r-bsgenome-mmusculus-ucsc-mm9)[source]:
Use bioconductor-uri.
[arguments]: Enable substitution.
 2019-12-04 09:28:54 +01:00
Ricardo Wurmus
a47646bd05
gnu: r-bsgenome-hsapiens-ucsc-hg19-masked: Use bioconductor-uri. 
* gnu/packages/bioconductor.scm (r-bsgenome-hsapiens-ucsc-hg19-masked)[source]:
Use bioconductor-uri.
 2019-12-04 09:28:34 +01:00
Ricardo Wurmus
88e7c7db59
gnu: r-bsgenome-hsapiens-1000genomes-hs37d5: Use bioconductor-uri. 
* gnu/packages/bioconductor.scm (r-bsgenome-hsapiens-1000genomes-hs37d5)[source]:
Use bioconductor-uri.
[arguments]: Enable substitution.
 2019-12-04 09:28:04 +01:00
Ricardo Wurmus
bf05ece1a2
gnu: r-bsgenome-dmelanogaster-ucsc-dm3-masked: Use bioconductor-uri. 
* gnu/packages/bioconductor.scm (r-bsgenome-dmelanogaster-ucsc-dm3-masked)[source]:
Use bioconductor-uri.
 2019-12-04 09:27:15 +01:00
Ricardo Wurmus
87073b7ecb
gnu: r-bsgenome-dmelanogaster-ucsc-dm3: Use bioconductor-uri. 
* gnu/packages/bioconductor.scm (r-bsgenome-dmelanogaster-ucsc-dm3)[source]:
Use bioconductor-uri.
[arguments]: Enable substitution.
 2019-12-04 09:26:22 +01:00
Ricardo Wurmus
149f351f38
gnu: r-bsgenome-dmelanogaster-ucsc-dm6: Use bioconductor-uri. 
* gnu/packages/bioconductor.scm (r-bsgenome-dmelanogaster-ucsc-dm6)[source]:
Use bioconductor-uri.
[arguments]: Permit substitution.
 2019-12-04 09:25:10 +01:00
Ricardo Wurmus
6998ecba74
gnu: r-bsgenome-celegans-ucsc-ce10: Use bioconductor-uri. 
* gnu/packages/bioconductor.scm (r-bsgenome-celegans-ucsc-ce10)[source]: Use
bioconductor-uri.
[arguments]: Permit substitution.
 2019-12-04 09:24:09 +01:00
Brett Gilio
19e67f8216
gnu: emacs-olivetti: Update to 1.8.1. 
* gnu/packages/emacs-xyz.scm (emacs-olivetti): Update to 1.8.1.

Signed-off-by: Ricardo Wurmus <rekado@elephly.net>
 2019-12-04 09:00:38 +01:00
Brett Gilio
d6445fa690
gnu: emacs-irony-mode: Update to 1.4.0. 
* gnu/packages/emacs-xyz.scm (emacs-irony-mode): Update to 1.4.0.

Signed-off-by: Ricardo Wurmus <rekado@elephly.net>
 2019-12-04 09:00:31 +01:00
Brett Gilio
362e5f9408
gnu: emacs-elisp-demos: Update to 2019.12.01. 
* gnu/packages/emacs-xyz.scm (emacs-elisp-demos): Update to 2019.12.01.

Signed-off-by: Ricardo Wurmus <rekado@elephly.net>
 2019-12-04 09:00:22 +01:00
Brett Gilio
17f88b9c01
gnu: emacs-doom-modeline: Update to 2.8.0. 
* gnu/packages/emacs-xyz.scm (emacs-doom-modeline): Update to 2.8.0.

Signed-off-by: Ricardo Wurmus <rekado@elephly.net>
 2019-12-04 08:59:43 +01:00
Ricardo Wurmus
312ec128af
gnu: python-pandas: Move to (gnu packages python-science). 
* gnu/packages/python-xyz.scm (python-pandas, python2-pandas): Move from
here...
* gnu/packages/python-science.scm (python-pandas, python2-pandas): ...to here.
* gnu/packages/benchmark.scm, gnu/packages/databases.scm,
gnu/packages/graph.scm, gnu/packages/parallel.scm,
gnu/packages/serialization.scm: Import (gnu packages python-science).
 2019-12-04 08:56:36 +01:00
Eric Bavier
dc3e62a494
gnu: handbrake: Upgrade to 1.3.0. 
* gnu/packages/patches/handbrake-opt-in-nvenc.patch: Delete file.
* gnu/local.mk (dist_patch_DATA): Remove it.
* gnu/packages/video.scm (handbrake)[source]: Upgrade to 1.3.0.  Remove
patch.
[native-inputs]: Remove cmake and curl.
[inputs]: Add dav1d and numactl.
[arguments]: Add "--disable-nvenc" to configure flags in place of patch.
Adjust "bootstrap" phase in response to upstream changes.
Add "patch-SHELL" and "relax-reqs" phases.
 2019-12-03 22:20:22 -06:00
Andreas Enge
4c16ffd383
gnu: tcc: Add search paths and drop the wrapper. 
* gnu/packages/c.scm (tcc): Add native search paths.
(tcc-wrapper): Remove variable.
 2019-12-03 22:18:08 +01:00
Tobias Geerinckx-Rice
1b6c5e8039
gnu: cmocka: Update to 1.1.5. 
* gnu/packages/check.scm (cmocka): Update to 1.1.5.
 2019-12-03 21:50:04 +01:00
Tobias Geerinckx-Rice
efa45291b7
gnu: girara: Update to 0.3.3. 
* gnu/packages/gtk.scm (girara): Update to 0.3.3.
 2019-12-03 21:50:04 +01:00
Tobias Geerinckx-Rice
741b505307
gnu: libcdio: Update to 2.1.0. 
* gnu/packages/cdrom.scm (libcdio): Update to 2.1.0.
 2019-12-03 21:50:04 +01:00
Tobias Geerinckx-Rice
a344a1af07
gnu: libcdio-paranoia: Update to 10.2+2.0.0. 
* gnu/packages/cdrom.scm (libcdio-paranoia): Update to 10.2+2.0.0.
 2019-12-03 21:50:03 +01:00
Tobias Geerinckx-Rice
6b9ec7b0ef
gnu: libburn: Update to 1.5.2. 
* gnu/packages/cdrom.scm (libburn): Update to 1.5.2.
 2019-12-03 21:50:03 +01:00
Ricardo Wurmus
dfe11a489b
gnu: r-rsqlite: Update to 2.1.3. 
* gnu/packages/statistics.scm (r-rsqlite): Update to 2.1.3.
 2019-12-03 14:54:20 +01:00
Ricardo Wurmus
64d576e514
gnu: r-roxygen2: Update to 7.0.2. 
* gnu/packages/statistics.scm (r-roxygen2): Update to 7.0.2.
 2019-12-03 14:54:13 +01:00
Ricardo Wurmus
3fff4de729
gnu: r-testthat: Update to 2.3.1. 
* gnu/packages/statistics.scm (r-testthat): Update to 2.3.1.
 2019-12-03 14:54:06 +01:00
Ricardo Wurmus
6a7ac0a829
gnu: r-rspectra: Update to 0.16-0. 
* gnu/packages/cran.scm (r-rspectra): Update to 0.16-0.
 2019-12-03 14:53:59 +01:00
Ricardo Wurmus
8aab9b98cf
gnu: r-sjplot: Update to 2.8.1. 
* gnu/packages/cran.scm (r-sjplot): Update to 2.8.1.
 2019-12-03 14:53:50 +01:00
Ricardo Wurmus
de5092bab0
gnu: r-bayesplot: Update to 1.7.1. 
* gnu/packages/cran.scm (r-bayesplot): Update to 1.7.1.
 2019-12-03 14:53:42 +01:00
Ricardo Wurmus
27c2a6a160
gnu: r-maptools: Update to 0.9-9. 
* gnu/packages/cran.scm (r-maptools): Update to 0.9-9.
 2019-12-03 14:53:30 +01:00
Ricardo Wurmus
a477a5c357
gnu: r-network: Update to 1.16.0. 
* gnu/packages/cran.scm (r-network): Update to 1.16.0.
 2019-12-03 14:53:22 +01:00
Ricardo Wurmus
bce0fcae12
gnu: r-dendextend: Update to 1.13.2. 
* gnu/packages/cran.scm (r-dendextend): Update to 1.13.2.
 2019-12-03 14:53:14 +01:00
Ricardo Wurmus
ea5af6e74b
gnu: r-curl: Update to 4.3. 
* gnu/packages/cran.scm (r-curl): Update to 4.3.
 2019-12-03 14:53:01 +01:00
Efraim Flashner
dc7e57833e
gnu: jp2a: Downgrade to 1.0.6. 
* gnu/packages/image.scm (jp2a): Downgrade to 1.0.6.
[source]: Download from Debian's sources.
[inputs]: Add ncurses.
[native-inputs]: Remove autoconf, automake, pkg-config.
 2019-12-03 11:09:47 +02:00
Efraim Flashner
d507ec0994
gnu: toot: Make propagated-inputs regular inputs. 
* gnu/packages/mastodon.scm (toot)[propagated-inputs]: Move all ...
[inputs]: ... here.
 2019-12-03 11:00:14 +02:00
Efraim Flashner
324db47147
gnu: toot: Add missing input. 
* gnu/packages/mastodon.scm (toot)[propagated-inputs]: Add python-urwid.
 2019-12-03 10:59:33 +02:00
Tobias Geerinckx-Rice
0576681c79
gnu: emacs-diff-hl: Update to 1.8.7. 
* gnu/packages/emacs-xyz.scm (emacs-diff-hl): Update to 1.8.7.
 2019-12-03 01:52:46 +01:00
Tobias Geerinckx-Rice
8e936351d7
gnu: xlockmore: Update to 5.59. 
* gnu/packages/xdisorg.scm (xlockmore): Update to 5.59.
 2019-12-03 01:52:46 +01:00
Tobias Geerinckx-Rice
d539ca11b3
gnu: exo: Update to 0.12.10. 
* gnu/packages/xfce.scm (exo): Update to 0.12.10.
 2019-12-03 01:52:46 +01:00
Tobias Geerinckx-Rice
378506a964
gnu: sysstat: Update to 12.2.0. 
* gnu/packages/linux.scm (sysstat): Update to 12.2.0.
 2019-12-03 01:52:45 +01:00
Tobias Geerinckx-Rice
30954e61b2
gnu: mtr: Use @acronym{}. 
* gnu/packages/networking.scm (mtr)[description]: Substitute @acronym
for @dfn.
 2019-12-03 01:52:45 +01:00
Tobias Geerinckx-Rice
3f80d7ced2
gnu: mtr: Don't use NAME in source URI. 
* gnu/packages/networking.scm (mtr)[source]: Hard-code NAME.
 2019-12-03 01:52:45 +01:00
Tobias Geerinckx-Rice
a36eba4716
gnu: mtr: Update to 0.93. 
* gnu/packages/networking.scm (mtr): Update to 0.93.
[native-inputs]: Remove now-unnecessary autoconf.
 2019-12-03 01:52:45 +01:00
Tobias Geerinckx-Rice
fc1ca29da3
gnu: microcom: Use HTTPS home page. 
* gnu/packages/microcom.scm (microcom)[home-page]: Use HTTPS.
 2019-12-03 01:52:45 +01:00
Tobias Geerinckx-Rice
d9a746d43d
gnu: microcom: Update to 2017.03.0. 
* gnu/packages/microcom.scm (microcom): Update to 2017.03.0.
 2019-12-03 01:52:45 +01:00
Tobias Geerinckx-Rice
b73a930703
gnu: microcom: Use GIT-FILE-NAME. 
* gnu/packages/microcom.scm (microcom)[source]: Use GIT-FILE-NAME.
 2019-12-03 01:52:45 +01:00
Tobias Geerinckx-Rice
6deab02c78
gnu: less: Update to 551. 
* gnu/packages/less.scm (less): Update to 551.
 2019-12-03 01:52:45 +01:00
Tobias Geerinckx-Rice
4e94744dd9
gnu: less: Add upstream source URI. 
* gnu/packages/less.scm (less)[source]: Add the author's site.
 2019-12-03 01:52:44 +01:00
Tobias Geerinckx-Rice
df76e0524d
gnu: nsd: Update to 4.2.3. 
* gnu/packages/dns.scm (nsd): Update to 4.2.3.
 2019-12-03 01:52:44 +01:00
Tobias Geerinckx-Rice
bc134c77e0
gnu: pugixml: Update to 1.10. 
* gnu/packages/xml.scm (pugixml): Update to 1.10.
[source]: Remove obsolete patch.
* gnu/packages/patches/pugixml-versioned-libdir.patch: Delete file.
* gnu/local.mk (dist_patch_DATA): Remove it.
 2019-12-03 01:52:44 +01:00
Tobias Geerinckx-Rice
51058cb232
gnu: eid-mw: Update to 4.4.23. 
* gnu/packages/security-token.scm (eid-mw): Update to 4.4.23.
 2019-12-03 01:52:44 +01:00
Tobias Geerinckx-Rice
468c2402c7
gnu: console-setup: Update to 1.194. 
* gnu/packages/xorg.scm (console-setup): Update to 1.194.
 2019-12-03 01:52:44 +01:00
Tobias Geerinckx-Rice
c6df2f5817
gnu: xclock: Don't use NAME in source URI. 
* gnu/packages/xorg.scm (xclock)[source]: Hard-code NAME.
 2019-12-03 01:52:44 +01:00
Tobias Geerinckx-Rice
fb0f4ab8ed
gnu: xclock: Update to 1.0.9. 
* gnu/packages/xorg.scm (xclock): Update to 1.0.9.
 2019-12-03 01:52:44 +01:00
Tobias Geerinckx-Rice
c93bd94c49
gnu: soundtouch: Use HTTPS home page. 
* gnu/packages/audio.scm (soundtouch)[home-page]: Use HTTPS.
 2019-12-03 01:52:44 +01:00
Tobias Geerinckx-Rice
b1d13e40fe
gnu: snd: Update to 19.9. 
* gnu/packages/audio.scm (snd): Update to 19.9.
 2019-12-03 01:52:43 +01:00
Alex Griffin
13125c5afe
gnu: Remove python2-socksipychain. 
* gnu/packages/python-xyz.scm (python2-socksipychain): Remove variable.
 2019-12-02 09:45:33 -06:00
Alex Griffin
8c655deb7d
gnu: pagekite: Update to 1.5.0.191126. 
* gnu/packages/networking.scm (pagekite): Update to 1.5.0.191126.
[source]: Fetch from GitHub.
[arguments]: Build with Python 3.
[inputs]: Add python-six.
 2019-12-02 09:45:32 -06:00
Alex Griffin
d97cdff18e
gnu: python-socksipychain: Update to 2.1.0. 
* gnu/packages/python-xyz.scm (python-socksipychain): Update to 2.1.0.
 2019-12-02 09:45:31 -06:00
Ricardo Wurmus
ec1224a73b
gnu: python-scipy: Move to (gnu packages python-science). 
* gnu/packages/python-xyz.scm (python-scipy, python2-scipy): Move these from
here...
* gnu/packages/python-science.scm (python-scipy, python2-scipy): ...to here.
* gnu/packages/bioinformatics.scm, gnu/packages/machine-learning.scm,
gnu/packages/statistics.scm: Adjust module imports.
 2019-12-02 15:25:17 +01:00
Ricardo Wurmus
ca7c365312
gnu: python-scikit-image: Move to (gnu packages python-science). 
* gnu/packages/python-xyz.scm (python-scikit-image, python2-scikit-image):
Move these two from here...
* gnu/packages/python-science.scm: ...to this new file.
* gnu/local.mk (GNU_SYSTEM_MODULES): Add it.
 2019-12-02 15:25:12 +01:00
Efraim Flashner
5fbdd917b7
gnu: python-pillow: Update to 6.2.1. 
* gnu/packages/python-xyz.scm (python-pillow): Update to 6.2.1.
 2019-12-02 15:12:50 +02:00
Efraim Flashner
0c4e1c5fbf
gnu: python-pillow: Sort inputs alphabetically. 
* gnu/packages/python-xyz.scm (python-pillow)[inputs]: Sort
alphabetically.
 2019-12-02 15:12:49 +02:00
Efraim Flashner
979d8464d4
gnu: python-pillow: Make check phase conditional. 
* gnu/packages/python-xyz.scm (python-pillow)[arguments]: Wrap custom
'check phase in check for 'tests?'.
 2019-12-02 15:12:49 +02:00
Efraim Flashner
61b77ff307
gnu: python-pillow: Replace check phase. 
* gnu/packages/python-xyz.scm (python-pillow)[arguments]: Since 'check
always come after 'install, replace 'check phase rather than recreate it.
 2019-12-02 15:12:46 +02:00
Brett Gilio
c07c0acf19
gnu: Add emacs-telega. 
* gnu/packages/emacs-xyz.scm (emacs-telega): New variable.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
 2019-12-02 12:24:43 +01:00
Ludovic Courtès
e1b88fde12
gnu: android-libselinux: Avoid top-level references to 'libsellinux'. 
* gnu/packages/android.scm (android-libselinux)[synopsis]
[description, license]: Remove references to 'libsellinux'.
 2019-12-02 11:32:17 +01:00
Ludovic Courtès
8804215462
gnu: 0ad-data: Avoid top-level references to 'font-bitstream-vera'. 
* gnu/packages/games.scm (0ad-data)[license]: Avoid references to
'font-bitstream-vera'.
 2019-12-02 11:20:27 +01:00
Ludovic Courtès
a72aab9f71
gnu: stress-make: Avoid top-level reference to 'gnu-make'. 
* gnu/packages/debug.scm (stress-make)[license]: Hard-code GPL3+ instead
of referring to 'gnu-make'.
 2019-12-02 11:16:31 +01:00
Ludovic Courtès
abad22dd4a
gnu: gajim: Avoid top-level reference to 'python'. 
This fixes a circular dependency due to this top-level reference to
'python' as discussed in <https://bugs.gnu.org/38326>.

* gnu/packages/messaging.scm (gajim)[native-search-paths]: Remove
reference to 'python'.  Hard-code the Python version instead.
 2019-12-02 11:14:09 +01:00
Guillaume Le Vaillant
66977719a6
gnu: Add q5go. 
* gnu/packages/games.scm (q5go): New variable.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
 2019-12-02 10:19:30 +01:00
Brett Gilio
f45968cbab
gnu: Add emacs-org-present. 
* gnu/packages/emacs-xyz.scm (emacs-org-present): New variable.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
 2019-12-02 10:19:30 +01:00
Brett Gilio
bdc11c0f3a
gnu: Add emacs-doom-modeline. 
* gnu/packages/emacs-xyz.scm (emacs-doom-modeline): New variable.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
 2019-12-02 10:19:30 +01:00
Brett Gilio
c4c59b08fe
gnu: Add emacs-shrink-path. 
* gnu/packages/emacs-xyz.scm (emacs-shrink-path): New variable.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
 2019-12-02 10:19:30 +01:00
Brett Gilio
5005b6a1c9
gnu: ccls: Update to 0.20190823.5. 
* gnu/packages/cpp.scm (ccls): Update to 0.20190823.5.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
 2019-12-02 10:19:30 +01:00
Daniel Schäfer
ad54d6c99f
gnu: Add ipcalc. 
* gnu/packages/networking.scm (ipcalc): New variable.

Signed-off-by: Mathieu Othacehe <m.othacehe@gmail.com>
 2019-12-02 09:07:07 +01:00
Mark H Weaver
b3cea86ac8
gnu: linux-libre@4.19: Update to 4.19.87. 
* gnu/packages/linux.scm (linux-libre-4.19-version): Update to 4.19.87.
(linux-libre-4.19-pristine-source): Update hash.
 2019-12-01 20:50:28 -05:00
Mark H Weaver
eac9ddfaf3
gnu: linux-libre@4.14: Update to 4.14.157. 
* gnu/packages/linux.scm (linux-libre-4.14-version): Update to 4.14.157.
(linux-libre-4.14-pristine-source): Update hash.
 2019-12-01 20:49:20 -05:00
Ludovic Courtès
33d1c970c3
install: Pass 'local-file' literal strings for proper resolution. 
This is a followup to 99c45877a9, which
introduced a regression: "guix system build gnu/system/install.scm"
would fail to find the .tmpl files.

* gnu/system/install.scm (/etc/configuration-files)[file]: Remove.
[directory]: Use 'local-file' with a literal string.
 2019-12-01 23:36:52 +01:00
Nicolas Goaziou
6177b14bcf
gnu: scummvm: Update to 2.1.0. 
* gnu/packages/emulators.scm (scummvm): Update to 2.1.0.
 2019-12-01 22:04:52 +01:00
Nicolas Goaziou
6610b04998
gnu: snap: Update to 5.3.8. 
* gnu/packages/education.scm (snap): Update to 5.3.8.
 2019-12-01 21:40:48 +01:00
Nicolas Goaziou
8ab624f991
gnu: mame: Update to 0.216. 
* gnu/packages/emulators.scm (mame): Update to 0.216.
 2019-12-01 21:35:22 +01:00
Leo Famulari
b4cb5d7a48
gnu: WireGuard: Update to 0.0.20191127. 
* gnu/packages/vpn.scm (wireguard): Update to 0.0.20191127.
 2019-12-01 15:26:50 -05:00
Nicolas Goaziou
c114e35024
gnu: giac: Update to 1.5.0-75. 
* gnu/packages/algebra.scm (giac): Update to 1.5.0-75.
 2019-12-01 21:24:20 +01:00
Nicolas Goaziou
363359f8de
gnu: grammalecte: Update to 1.6.0. 
* gnu/packages/dictionaries.scm (grammalecte): Update to 1.6.0.
 2019-12-01 21:23:46 +01:00
Nicolas Goaziou
faaffb902d
gnu: fet: Update to 5.41.0. 
* gnu/packages/education.scm (fet): Update to 5.41.0.
 2019-12-01 21:18:19 +01:00
Nicolas Goaziou
d7d23c86f8
gnu: asymptote: Update to 2.61. 
* gnu/packages/plotutils.scm (asymptote): Update to 2.61.
 2019-12-01 21:17:37 +01:00
Hartmut Goebel
d733a469d7
gnu: Remove dependency on Python 2 for some Qt packages. 
* gnu/packages/qt.scm (qtbase, qtmultimedia) [native-inputs]: Replace
  python-2 by python.
  (qtdeclarative)[native-inputs]: Replace python-2 by python, add
  python-wrapper.
 2019-12-01 20:35:06 +01:00
Hartmut Goebel
34e31612e2
gnu: quaternion: Use qt-build-system. 
* gnu/packages/display-managers.scm (quaternion): Use qt-build-sytem.
  [arguments]<modules, imported-modules, phases>: Remove.
 2019-12-01 20:24:47 +01:00
Hartmut Goebel
e185e900e5
gnu: kdeconnect: Use qt-build-system. 
* gnu/packages/display-managers.scm (kdeconnect): Use qt-build-sytem.
  [arguments]<modules, imported-modules>: Remove. <phases>: Base
  on phases from qt-build-system. {wrap-executable}: Remove.
 2019-12-01 20:24:47 +01:00
Hartmut Goebel
7d796d8068
gnu: ktouch: Use qt-build-system. 
* gnu/packages/display-managers.scm (ktouch): Use qt-build-sytem.
  [arguments]<modules, imported-modules>: Remove. <phases>: Base
  on phases from qt-build-system. {wrap-executables}: Remove.
 2019-12-01 20:24:47 +01:00
Hartmut Goebel
2f57e34bf3
gnu: sddm: Use qt-build-system. 
* gnu/packages/display-managers.scm (sddm): Use qt-build-sytem.
  [arguments]<modules, imported-modules>: Remove. <phases>: Base
  on phases from qt-build-system. {wrap-programs}: Remove.
 2019-12-01 20:24:47 +01:00
Mathieu Othacehe
c6d130630a
build: vm: Fix qemu-command procedure. 
* gnu/build/vm.scm (qemu-command): When system is "armhf-linux", use "arm" as
qemu cpu prefix.
 2019-12-01 16:52:30 +01:00
Mathieu Othacehe
d4ddf22d54
system: vm: Support cross-compilation. 
* gnu/system.scm (system-linux-image-file-name): Add support for cross-built
systems. Remove system argument that was ignored,
(operating-system-kernel-file): adapt by removing ignored os argument.
* gnu/system/vm.scm (expression->derivation-in-linux-vm): Add target
argument and turn inputs into native-inputs. Pass target to qemu-command
and gexp->derivation calls.
(iso9660-image): Add target argument and pass it to
expression->derivation-in-linux-vm. Remove qemu from inputs as it
is not necessary.
(qemu-image): Add target argument, also remove qemu from inputs. Pass
target argument to expression->derivation-in-linux-vm call.
 2019-12-01 16:51:40 +01:00
Tobias Geerinckx-Rice
39c746f081
gnu: bs1770gain: Update to 0.6.5. 
* gnu/packages/audio.scm (bs1770gain): Update to 0.6.5.
[source]: Adjust snippet for upstream BS gain.
 2019-12-01 16:01:46 +01:00
Pierre Neidhardt
5b0289870a
gnu: jami: Fix wrapper. 
* gnu/packages/telephony.scm (jami)[arguments]: Wrap around jami-gnome instead
  of gnome-ring.
  [synopsis]: Make it more sensible.
 2019-12-01 13:37:16 +01:00
Pierre Neidhardt
a83855ffad
gnu: libring: Update to 20191101. 
* gnu/packages/telephony.scm (libring)[inputs]: Replace restbed with restinio,
  add asio.
 2019-12-01 13:37:16 +01:00
Pierre Neidhardt
fbcd60dd15
gnu: pjproject-jami: Update to 2.9 
* gnu/packages/telephony.scm (pjproject-jami)[arguments]: Fix flags, make
  files writable, update patch set.
 2019-12-01 13:37:16 +01:00
Pierre Neidhardt
de65f3f1bb
gnu: jami: Update to 20191101.3.67671e7. 
* gnu/packages/telephony.scm (jami): Update to 20191101.3.67671e7.
 2019-12-01 13:37:16 +01:00