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79911 Commits

Author SHA1 Message Date
Julien Lepiller
514deaa8d4
gnu. java-lmax-disruptor: Update to 3.4.4. 
* gnu/packages/java.scm (java-lmax-disruptor): Update to 3.4.4.
[source]: Use git-fetch instead of url-fetch.
 2021-12-12 00:00:27 +01:00
Julien Lepiller
684e22dce2
gnu: Add java-conversant-disruptor. 
* gnu/packages/java.scm (java-conversant-disruptor): New variable.
 2021-12-12 00:00:22 +01:00
Julien Lepiller
b049f5bbea
gnu: Add java-jctools-core-1. 
* gnu/packages/java.scm (java-jctools-core-1): New variable.
 2021-12-12 00:00:18 +01:00
Julien Lepiller
5259513d5e
gnu: java-jansi: Update to 2.4.0. 
* gnu/packages/java.scm (java-jansi): Update to 2.4.0.
(java-jansi-1): New variable.
[source]: Use git-fetch instead of url-fetch.
(java-jline-2)[inputs]: Use java-jansi-1.
* gnu/packages/groovy.scm (java-groovy-bootstrap)[inputs]: Use java-jansi-1.
 2021-12-12 00:00:06 +01:00
Jonathan Brielmaier
8c6508b928
gnu: icedove: Update to 91.4.0 [fixes CVE-2021-43528]. 
* gnu/packages/gnuzilla.scm (icedove): Update to 91.4.0.
 2021-12-11 17:28:59 +01:00
Andrew Tropin
2e28b450d5
gnu: emacs-telega: Update to 0.7.15-1.b4a5e20. 
* gnu/packages/emacs-xyz.scm (emacs-telega-server): Update to
0.7.15-1.b4a5e20.
* gnu/packages/patches/emacs-telega-path-placeholder.patch: Match patch with
newer source code.
* gnu/packages/patches/emacs-telega-test-env.patch: Match patch with newer
source code.

Signed-off-by: Nicolas Goaziou <mail@nicolasgoaziou.fr>
 2021-12-11 16:08:04 +01:00
Andrew Tropin
649ab3fe2d
gnu: tdlib: Update to 1.7.10. 
* gnu/packages/messaging.scm (tdlib): Update to 1.7.10.

Signed-off-by: Nicolas Goaziou <mail@nicolasgoaziou.fr>
 2021-12-11 16:07:36 +01:00
jgart via Guix-patches via
ebff268bfc
gnu: Add vivid. 
* gnu/packages/rust-apps.scm (vivid): New variable.

Signed-off-by: Nicolas Goaziou <mail@nicolasgoaziou.fr>
 2021-12-11 15:46:12 +01:00
Demis Balbach
c11c1080de
gnu: carla: Update to 2.4.1. 
* gnu/packages/audio.scm (carla): Update to 2.4.1.

Signed-off-by: Nicolas Goaziou <mail@nicolasgoaziou.fr>
 2021-12-11 15:37:51 +01:00
Petr Hodina
610645b175
gnu: i3status-rust: Add missing inputs. 
* gnu/packages/rust-apps (i3status-rust)[inputs]: Add alsa-utils,
  bash-minmal, coreutils, ibus, iproute, kdeconnect, lm-sensors, setxkbmap,
  speedtest-cli, xdg-utils, xrandr.
  [arguments]: Add phase to wrap-program bin/i3status-rs.
* gnu/local.mk: Add patch (change not applied in
  575fcd3045)

Signed-off-by: Nicolas Goaziou <mail@nicolasgoaziou.fr>
 2021-12-11 15:35:44 +01:00
Nikolay Korotkiy
bf189fd2b5
gnu: gmnisrv: Update to 1.0. 
* gnu/packages/web.scm (gmnisrv): Update to 1.0.

Signed-off-by: Nicolas Goaziou <mail@nicolasgoaziou.fr>
 2021-12-11 15:33:42 +01:00
Foo Chuan Wei
58dbf4c930
gnu: Add optionmatrix. 
* gnu/packages/finance.scm (optionmatrix): New variable.

Signed-off-by: Guillaume Le Vaillant <glv@posteo.net>
 2021-12-11 14:37:33 +01:00
Foo Chuan Wei
f00690c0ed
gnu: Add s9fes. 
* gnu/packages/scheme.scm (s9fes): New variable.

Signed-off-by: Guillaume Le Vaillant <glv@posteo.net>
 2021-12-11 14:37:33 +01:00
Nicolas Goaziou
0d8c801d83
gnu: pdfarranger: Update to 1.8.1. 
* gnu/packages/pdf.scm (pdfarranger): Update to 1.8.1.
 2021-12-11 14:27:37 +01:00
Nicolas Goaziou
60dc7a7925
gnu: emacs-webpaste: Update to 3.2.2. 
* gnu/packages/emacs-xyz.scm (emacs-webpaste): Update to 3.2.2.
 2021-12-11 14:25:31 +01:00
Jacob MacDonald
b3a801330e
gnu: sbcl-slime-swank: Update to 2.26.1. 
* gnu/packages/lisp-xyz.scm (sbcl-slime-swank): Update to 2.26.1.

Signed-off-by: Guillaume Le Vaillant <glv@posteo.net>
 2021-12-11 11:47:51 +01:00
Foo Chuan Wei
0e14da5475
gnu: sbcl-mgl-pax: Update home page. 
* gnu/packages/lisp-xyz.scm (sbcl-mgl-pax)[home-page]: Update home page.

Signed-off-by: Guillaume Le Vaillant <glv@posteo.net>
 2021-12-11 11:29:09 +01:00
Foo Chuan Wei
acf44174c9
gnu: Add cl-mgl-gpr. 
* gnu/packages/lisp-xyz.scm (cl-mgl-gpr, ecl-mgl-gpr, sbcl-mgl-gpr):
  New variables.

Signed-off-by: Guillaume Le Vaillant <glv@posteo.net>
 2021-12-11 11:26:14 +01:00
Foo Chuan Wei
0191fedb7f
gnu: Add cl-random. 
* gnu/packages/lisp-xyz.scm (cl-random, ecl-cl-random, sbcl-cl-random):
  New variables.

Signed-off-by: Guillaume Le Vaillant <glv@posteo.net>
 2021-12-11 11:18:52 +01:00
Foo Chuan Wei
17bbd5ae07
gnu: Add cl-rmath. 
* gnu/packages/lisp-xyz.scm (cl-rmath, ecl-cl-rmath, sbcl-cl-rmath):
  New variables.

Signed-off-by: Guillaume Le Vaillant <glv@posteo.net>
 2021-12-11 11:11:23 +01:00
Foo Chuan Wei
e8fa25f6a4
gnu: Add cl-lla. 
* gnu/packages/lisp-xyz.scm (cl-lla, ecl-lla, sbcl-lla): New variables.

Signed-off-by: Guillaume Le Vaillant <glv@posteo.net>
 2021-12-11 11:08:08 +01:00
Foo Chuan Wei
163f7831c4
gnu: Add cl-num-utils. 
* gnu/packages/lisp-xyz.scm (cl-num-utils, ecl-cl-num-utils,
  sbcl-cl-num-utils): New variables.

Signed-off-by: Guillaume Le Vaillant <glv@posteo.net>
 2021-12-11 11:03:41 +01:00
Foo Chuan Wei
d3b5414691
gnu: Add cl-core-gp. 
* gnu/packages/lisp-xyz.scm (cl-core-gp, ecl-core-gp, sbcl-core-gp):
  New variables.

Signed-off-by: Guillaume Le Vaillant <glv@posteo.net>
 2021-12-11 10:46:16 +01:00
Foo Chuan Wei
e9c6be1126
gnu: Add cl-zsort. 
* gnu/packages/lisp-xyz.scm (cl-zsort, ecl-zsort, sbcl-zsort): New
  variables.

Signed-off-by: Guillaume Le Vaillant <glv@posteo.net>
 2021-12-11 10:38:59 +01:00
Liliana Marie Prikler
01a007f467
gnu: Add emacs-cc-mode. 
* gnu/packages/emacs-xyz.scm (emacs-cc-mode): New variable.
 2021-12-11 09:19:30 +01:00
Giacomo Leidi via Guix-patches via
cfdf66e6bf
gnu: Add gprof2dot. 
* gnu/packages/graphviz.scm (gprof2dot): New variable.

Signed-off-by: Nicolas Goaziou <mail@nicolasgoaziou.fr>
 2021-12-10 23:47:01 +01:00
Foo Chuan Wei
f08ce1d9ce
gnu: Add sunclock. 
* gnu/packages/astronomy.scm (sunclock): New variable.

Signed-off-by: Nicolas Goaziou <mail@nicolasgoaziou.fr>
 2021-12-10 23:40:08 +01:00
Nikolay Korotkiy
f489116352
gnu: Add sfm. 
* gnu/packages/suckless.scm (sfm): New variable.

Signed-off-by: Nicolas Goaziou <mail@nicolasgoaziou.fr>
 2021-12-10 23:34:36 +01:00
Nikolay Korotkiy
6a53a7f36c
gnu: lagrange: Update to 1.9.2. 
* gnu/packages/web-browsers.scm (lagrange): Update to 1.9.2.

Signed-off-by: Nicolas Goaziou <mail@nicolasgoaziou.fr>
 2021-12-10 23:28:13 +01:00
Nikolay Korotkiy
e64eb96410
gnu: stagit: Update to 1.0. 
* gnu/packages/version-control.scm (stagit): Update to 1.0.

Signed-off-by: Nicolas Goaziou <mail@nicolasgoaziou.fr>
 2021-12-10 23:25:52 +01:00
Liliana Marie Prikler
e4aad0813b
gnu: emacs-dpd: Update to 0.2.1. 
* gnu/packages/emacs-xyz.scm (emacs-dpd): Update to 0.2.1.
 2021-12-10 23:15:58 +01:00
Mathieu Othacehe
32750e8c3e
Merge remote-tracking branch 'signed/master' into core-updates 2021-12-10 21:49:25 +01:00
Tobias Geerinckx-Rice
e1e3230312
gnu: privoxy: Update to 3.0.33. 
* gnu/packages/tor.scm (privoxy): Update to 3.0.33.
[arguments]: Don't explicitly return #t from phases.
 2021-12-10 18:30:55 +01:00
Vivien Kraus
6104071e48
gnu: gnome-maps: Upgrade to 41.2. 
* gnu/packages/geo.scm (gnome-maps): Upgrade to 41.2.

Signed-off-by: Mathieu Othacehe <othacehe@gnu.org>
 2021-12-10 18:17:45 +01:00
Vivien Kraus
502d4b5d62
gnu: gnome-maps: Build with libsoup 2. 
* gnu/packages/geo.scm (gnome-maps) [inputs]: Use libsoup-minimal-2 instead of
libsoup and webkitgtk-with-libsoup2 instead of webkitgtk.

Signed-off-by: Mathieu Othacehe <othacehe@gnu.org>
 2021-12-10 18:17:45 +01:00
Andy Tai
af067eaff4
gnu: godot: Update to 3.4. 
* gnu/packages/game-development.scm (godot): Update to 3.4.

Signed-off-by: Leo Famulari <leo@famulari.name>
 2021-12-10 11:18:59 -05:00
Andy Tai
53d69a60e7
gnu: superstarfighter: Update to 0.6.5. 
* gnu/packages/games.scm (superstarfighter): Update to 0.6.5.

Signed-off-by: Leo Famulari <leo@famulari.name>
 2021-12-10 11:18:55 -05:00
phodina
6cb805dcce
gnu: Add eg25-manager. 
* gnu/packages/firmware.scm (eg25-manager): New variable.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
 2021-12-10 15:32:45 +01:00
Vinicius Monego
6a887e4909
gnu: Add python-sphinxext-opengraph. 
* gnu/packages/sphinx.scm (python-sphinxext-opengraph): New variable.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
 2021-12-10 15:32:45 +01:00
Vinicius Monego
dc5ace95d3
gnu: Add python-sphinx-prompt. 
* gnu/packages/sphinx.scm (python-sphinx-prompt): New variable.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
 2021-12-10 15:32:45 +01:00
Philip McGrath
7c2d84df1c
gnu: sendgmail: Don't limit domain name of sender. 
There are three open pull requests adding this functionality:

  - https://github.com/google/gmail-oauth2-tools/pull/17 (October 2019)
  - https://github.com/google/gmail-oauth2-tools/pull/26 (May 2020)
  - https://github.com/google/gmail-oauth2-tools/pull/37 (May 2021)
    (The patch here is identical to #26, so I just closed this one.)

Meanwhile, the most recent commit to the upstream repository was in
May 2019: that was the commit that first added `sendgmail`.

This commit adjusts Guix's `sendgmail`, following Postel's advice,
to make the command "liberal in its receiving behavior" (RFC 760):
it always accepts email addresses with any domain name, as in #26,
and it accepts (and ignores) the `-gsuite` flag used in #17.

* gnu/packages/patches/sendgmail-remove-domain-restriction.patch:
New file. This is the patch from #26.
* gnu/packages/patches/sendgmail-accept-ignored-gsuite-flag.patch:
New file, based on #17.
* gnu/local.mk (dist_patch_DATA): Add the new patches.
* gnu/packages/mail.scm (sendgmail)[source]: Apply the new patches.
Increment the "revision" argument to `git-version` from 0 to 1.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
 2021-12-10 15:32:45 +01:00
Philip McGrath
5cf2c889c9
gnu: sendgmail: Rename package to match command. 
Suggested by Ludo’ in <https://issues.guix.gnu.org/50420#3>.

* gnu/packages/golang.scm
(go-github-com-google-gmail-oauth2-tools-go-sendgmail): Move to ...
* gnu/packages/mail.scm (sendgmail): ... this variable.
Change `propagated-inputs` to `inputs`.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
 2021-12-10 15:32:45 +01:00
Foo Chuan Wei
f0adb870ac
gnu: Add smlnj. 
* gnu/packages/sml.scm (smlnj): New variable.

Co-authored-by: Brett Gilio <brettg@gnu.org>
Signed-off-by: Ludovic Courtès <ludo@gnu.org>
 2021-12-10 15:32:45 +01:00
Julien Lepiller
18c406df97
gnu: ocaml-ppx-expect: Update to 0.14.2. 
* gnu/packages/ocaml.scm (ocaml-ppx-expect): Update to 0.14.2.
 2021-12-10 12:51:36 +01:00
Julien Lepiller
94226686fe
gnu: ocaml-migrate-parsetree: Update to 2.3.0. 
* gnu/packages/ocaml.scm (ocaml-migrate-parsetree): Update to 2.3.0.
 2021-12-10 12:51:32 +01:00
Julien Lepiller
6e06846c9d
gnu: ocamlformat: Update to 0.20.0. 
* gnu/packages/ocaml.scm (ocamlformat): Update to 0.20.0.
 2021-12-10 12:51:28 +01:00
Julien Lepiller
af365f0001
gnu: Add ocaml-either. 
* gnu/packages/ocaml.scm (ocaml-either): New variable.
 2021-12-10 12:51:22 +01:00
Julien Lepiller
5ad2dcecdc
gnu: ocaml-fix: Update to 20211125. 2021-12-10 12:51:06 +01:00
Efraim Flashner
a66642f744
gnu: cdrkit-libre: Fix cross-compiling. 
* gnu/packages/cdrom.scm (cdrkit-libre)[source]: Add patch.
* gnu/packages/patches/cdrkit-libre-cross-compile.patch: New file.
* gnu/local.mk (dist_patch_DATA): Register it.
 2021-12-10 12:57:35 +02:00
Arun Isaac
af5fa4d202
gnu: Add ccwl. 
* gnu/packages/bioinformatics.scm (ccwl): New variable.
 2021-12-10 15:26:59 +05:30
Efraim Flashner
8908c82bf9
gnu: dosfstools: Fix cross-compilation. 
Reported by Florian Hoertlehner.

* gnu/packages/disk.scm (dosfstools)[arguments]: Correctly refer to the
build output. Use cc-for-target.
 2021-12-10 10:58:56 +02:00
Nicolas Goaziou
549aa66e46
gnu: notmuch: Update to 0.34.2. 
* gnu/packages/mail.scm (notmuch): Update to 0.34.2.
 2021-12-10 09:01:59 +01:00
Nicolas Goaziou
c0b6036247
gnu: emacs-which-key: Update to 3.5.4. 
* gnu/packages/emacs-xyz.scm (emacs-which-key): Update to 3.5.4.
 2021-12-10 08:55:50 +01:00
Nicolas Goaziou
4199725ac8
gnu: emacs-ebib: Update to 2.34. 
* gnu/packages/emacs-xyz.scm (emacs-ebib): Update to 2.34.
 2021-12-10 08:54:21 +01:00
Tobias Geerinckx-Rice
e1973ae74b
gnu: gajim: Fix typo. 
* gnu/packages/messaging.scm (gajim)[arguments]: Add missing brackets.
All typos are my own.
 2021-12-10 04:54:06 +01:00
Tobias Geerinckx-Rice
4bf8348ff3
gnu: gajim: Restore 'disable-failing-tests phase. 
Gajim consistently builds on my machines & bayfront, whilst
raghavgururajan reports the exact same derivation consistently failing
with the commented error.  Odd.

* gnu/packages/messaging.scm (gajim)[arguments]: Restore the old
'disable-failing-tests phase.
 2021-12-10 04:48:29 +01:00
Nikolay Korotkiy
1825e45484
gnu: gpxsee: Update to 10.0. 
* gnu/packages/gps.scm (gpxsee): Update to 10.0.

Signed-off-by: Nicolas Goaziou <mail@nicolasgoaziou.fr>
 2021-12-10 00:45:53 +01:00
Nikolay Korotkiy
2fa1bcd971
gnu: nnn: Update to 4.4. 
* gnu/packages/admin.scm (nnn): Update to 4.4.

Signed-off-by: Nicolas Goaziou <mail@nicolasgoaziou.fr>
 2021-12-10 00:44:01 +01:00
Nicolas Goaziou
603d51829f
gnu: emacs-parsebib: Update to 3.1. 
* gnu/packages/emacs-xyz.scm (emacs-parsebib): Update to 3.1.
 2021-12-10 00:33:53 +01:00
Nicolas Goaziou
3d90a81313
gnu: rosegarden: Update to 21.12. 
* gnu/packages/music.scm (rosegarden): Update to 21.12.
 2021-12-10 00:32:12 +01:00
Nicolas Goaziou
a3cb34f7c5
gnu: pyzo: Update to 4.11.7. 
* gnu/packages/python-xyz.scm (pyzo): Update to 4.11.7.
 2021-12-10 00:28:45 +01:00
Petr Hodina
2f2b4a0f81
gnu: Add rust-spotify-tui-0.25. 
* gnu/packages/crates-io.scm (rust-spotify-tui-0.25): New variable.

Signed-off-by: Nicolas Goaziou <mail@nicolasgoaziou.fr>
 2021-12-10 00:11:29 +01:00
Petr Hodina
f15b6ae03a
gnu: rust-arboard-1: Update to 1.2.1. 
* gnu/packages/crates-io.scm (rust-arboard-1): Update to 1.2.1.
  [arguments](cargo-inputs): Add rust-env-logger-0.8, rust-simple-logger-1,
  rust-wl-clipboard-rs-0.4 and rust-x11rb-0.8. Remove rust-xcb-0.9.

Signed-off-by: Nicolas Goaziou <mail@nicolasgoaziou.fr>
 2021-12-10 00:11:28 +01:00
Petr Hodina
04cb4fcb5e
gnu: Add rust-wl-clipboard-rs-0.4. 
* gnu/packages/crates-io.scm (rust-wl-clipboard-rs-0.4): New variable.
* gnu/packages/patches/rust-wl-clipboard-rs-newer-wl.patch: New file.
* gnu/local.mk: Add patch.

Signed-off-by: Nicolas Goaziou <mail@nicolasgoaziou.fr>
 2021-12-10 00:11:28 +01:00
Petr Hodina
cf42c98929
gnu: Add rust-stderrlog-0.4. 
* gnu/packages/crates-io.scm (rust-stderrlog-0.4): New variable.

Signed-off-by: Nicolas Goaziou <mail@nicolasgoaziou.fr>
 2021-12-10 00:11:27 +01:00
Petr Hodina
cbd745912c
gnu: Add rust-thread-local-0.3.4. 
* gnu/packages/crates-io.scm (rust-thread-local-0.3.4): New variable.

Signed-off-by: Nicolas Goaziou <mail@nicolasgoaziou.fr>
 2021-12-10 00:11:27 +01:00
Petr Hodina
fe8f7651d1
gnu: Add rust-simple-logger-1. 
* gnu/packages/crates-io.scm (rust-simple-logger-1): New variable.

Signed-off-by: Nicolas Goaziou <mail@nicolasgoaziou.fr>
 2021-12-10 00:11:26 +01:00
Petr Hodina
149dd92888
gnu: Add rust-atty-0.2.11. 
* gnu/packages/crates-io.scm (rust-atty-0.2.11): New variable.

Signed-off-by: Nicolas Goaziou <mail@nicolasgoaziou.fr>
 2021-12-10 00:11:26 +01:00
Petr Hodina
1c7305adff
gnu: rust-anyhow-1: Update to 1.0.46. 
* gnu/packages/crates-io.scm (rust-anyhow-1): Update to 1.0.46.

Signed-off-by: Nicolas Goaziou <mail@nicolasgoaziou.fr>
 2021-12-10 00:11:26 +01:00
Petr Hodina
bff2009149
gnu: Add rust-tree-magic-0.2. 
* gnu/packages/crates-io.scm (rust-tree-magic-0.2): New variable.

Signed-off-by: Nicolas Goaziou <mail@nicolasgoaziou.fr>
 2021-12-10 00:11:25 +01:00
Petr Hodina
35cba1790f
gnu: Add rust-x11rb-0.8. 
* gnu/packages/crates-graphics.scm (rust-x11rb-0.8): New variable.

Signed-off-by: Nicolas Goaziou <mail@nicolasgoaziou.fr>
 2021-12-10 00:11:25 +01:00
Petr Hodina
f6f285270a
gnu: Add rust-winapi-wsapoll-0.1. 
* gnu/packages/crates-io.scm (rust-winapi-wsapoll-0.1): New variable.

Signed-off-by: Nicolas Goaziou <mail@nicolasgoaziou.fr>
 2021-12-10 00:11:24 +01:00
Petr Hodina
4f38c1f57e
gnu: Add rust-rspotify-0.10. 
* gnu/packages/crates-io.scm (rust-rspotify-0.10): New variable.

Signed-off-by: Nicolas Goaziou <mail@nicolasgoaziou.fr>
 2021-12-10 00:11:24 +01:00
Petr Hodina
76eadbeb89
gnu: Add rust-derive-builder-0.7. 
* gnu/packages/crates-io.scm (rust-derive-builder-0.7): New variable.

Signed-off-by: Nicolas Goaziou <mail@nicolasgoaziou.fr>
 2021-12-10 00:11:24 +01:00
Petr Hodina
a4d35d0c78
gnu: Add rust-derive-builder-core-0.5. 
* gnu/packages/crates-io.scm (rust-derive-builder-core-0.5): New variable.

Signed-off-by: Nicolas Goaziou <mail@nicolasgoaziou.fr>
 2021-12-10 00:11:23 +01:00
Petr Hodina
39e38804f2
gnu: Add rust-dotenv-0.13 
* gnu/packages/crates-io.scm (rust-dotenv-0.13): New variable.

Signed-off-by: Nicolas Goaziou <mail@nicolasgoaziou.fr>
 2021-12-10 00:11:23 +01:00
Petr Hodina
d8c0d955a4
gnu: Add rust-tui-0.16. 
* gnu/packages/crates-io.scm (rust-tui-0.16): New variable.
 (rust-tui-0.15): Inherit from above.

Signed-off-by: Nicolas Goaziou <mail@nicolasgoaziou.fr>
 2021-12-10 00:11:22 +01:00
Petr Hodina
ae01172fb3
gnu: Add rust-argh-0.1. 
* gnu/packages/crates-io.scm (rust-argh-0.1): New variable.

Signed-off-by: Nicolas Goaziou <mail@nicolasgoaziou.fr>
 2021-12-10 00:11:22 +01:00
Petr Hodina
2e625d0b2d
gnu: Add rust-argh-derive-0.1. 
* gnu/packages/crates-io (rust-argh-derive-0.1): New variable.

Signed-off-by: Nicolas Goaziou <mail@nicolasgoaziou.fr>
 2021-12-10 00:11:21 +01:00
Petr Hodina
dfdcd375a8
gnu: Add rust-argh-shared-0.1. 
* gnu/packages/crates-io.scm (rust-argh-shared-0.1): New variable.

Signed-off-by: Nicolas Goaziou <mail@nicolasgoaziou.fr>
 2021-12-10 00:11:21 +01:00
Julien Lepiller
4665e6a73b
gnu: opam: Update to 2.1.2. 
* gnu/packages/ocaml.scm (opam): Update to 2.1.2.
 2021-12-09 23:59:21 +01:00
Efraim Flashner
77ea796d1b
gnu: pplacer: Fix build. 
* gnu/packages/bioinformatics.scm (pplacer)[inputs]: Replace gsl with
gsl-static.
* gnu/packages/ocaml.scm (ocaml4.07-gsl-1)[inputs]: Same.
 2021-12-09 23:17:26 +02:00
Efraim Flashner
1da7f9089f
gnu: Add gsl-static. 
* gnu/packages/maths.scm (gsl-static): New variable.
 2021-12-09 23:17:26 +02:00
Efraim Flashner
1e81140cb5
gnu: python-dendropy: Skip additional test. 
* gnu/packages/bioinformatics.scm (python-dendropy)[arguments]: Adjust
custom 'skip-broken-tests phase to skip additional test.
 2021-12-09 22:43:42 +02:00
Ricardo Wurmus
13bc332ed5
gnu: mumi: Update to 0.0.1-6.8a45281. 
* gnu/packages/mail.scm (mumi): Update to 0.0.1-6.8a45281.
[arguments]: Remove trailing #T.
 2021-12-09 19:17:22 +01:00
Ricardo Wurmus
0e8826824c
gnu: python-rich: Remove optional input ipywidgets. 
* gnu/packages/python-xyz.scm (python-rich)[propagated-inputs]: Remove
python-ipywidgets.
 2021-12-09 19:17:21 +01:00
Ricardo Wurmus
4709decb45
gnu: r-minimal: Remove extraneous references. 
* gnu/packages/statistics.scm (r-minimal)[arguments]: Remove references to
native build-time tools.
 2021-12-09 19:17:16 +01:00
Marius Bakke
d974b3f860
gnu: uBlock Origin: Update to 1.39.2. 
* gnu/packages/browser-extensions.scm (ublock-origin): Update to 1.39.2.
 2021-12-09 17:39:29 +01:00
Marius Bakke
4cb5f0daf2
gnu: ungoogled-chromium: Update to 96.0.4664.93-1. 
* gnu/packages/chromium.scm (%chromium-version): Set to 96.0.4664.93.
(%ungoogled-origin, ungoogled-chromium): Update hashes.
 2021-12-09 17:39:29 +01:00
Efraim Flashner
f0cc0e8f30
gnu: imp: Build with default cmake. 
* gnu/packages/bioinformatics.scm (imp)[arguments]: Remove cmake flag.
 2021-12-09 14:39:22 +02:00
Ricardo Wurmus
2648d3207f
gnu: repeat-masker: Update to 4.1.2-p1. 
* gnu/packages/bioinformatics.scm (repeat-masker): Update to 4.1.2-p1.
 2021-12-09 12:10:18 +01:00
Ricardo Wurmus
0bf3c9abaa
gnu: metabat: Update to 2.15. 
* gnu/packages/bioinformatics.scm (metabat): Update to 2.15.
[source]: Remove patch.
[build-system]: Use cmake-build-system.
[arguments]: Adjust to new build system.
* gnu/packages/patches/metabat-fix-compilation.patch: Remove file.
* gnu/local.mk (dist_patch_DATA): Remove it.
 2021-12-09 11:50:10 +01:00
Ricardo Wurmus
ab445eb4b7
gnu: python2-scikit-learn: Disable one more test. 
* gnu/packages/machine-learning.scm (python2-scikit-learn)[arguments]: Do not
inherit; remove obsolete 'make-files-writable phase; disable one more failing
test in 'check phase.
 2021-12-09 11:17:45 +01:00
Ricardo Wurmus
1c7914009a
gnu: seek: Update to 1-1.196ed4c. 
* gnu/packages/bioinformatics.scm (seek): Update to 1-1.196ed4c.
[source]: Fetch from github.
[build-system]: Use cmake-build-system.
[arguments]: Remove all custom phases; replace 'check phase; disable tests;
set configure flags.
[inputs]: Add apache-thrift:include, apache-thrift:lib, and python.
[native-inputs]: Remove autoconf, automake, and perl; add pkg-config.
 2021-12-09 11:17:45 +01:00
Ricardo Wurmus
4fb363c906
gnu: libsvm: Install header and library. 
* gnu/packages/machine-learning.scm (libsvm)[arguments]: Add build phase
'build-lib; also install header file and shared library in the 'install phase.
 2021-12-09 11:17:45 +01:00
Ricardo Wurmus
26e26bc819
gnu: miso: Update to 0.5.4-1.b714021. 
* gnu/packages/bioinformatics.scm (miso): Update to 0.5.4-1.b714021.
[source]: Fetch via git; simplify snippet.
[inputs]: Replace samtools with samtools-1.2.
[home-page]: Update to new location.
 2021-12-09 11:17:45 +01:00
Ricardo Wurmus
0b8a75cc3a
gnu: Add samtools-1.2. 
* gnu/packages/bioinformatics.scm (samtools-1.2): New variable.
 2021-12-09 11:17:45 +01:00
Ricardo Wurmus
f505f588a7
gnu: Add htslib-for-samtools-1.2. 
* gnu/packages/bioinformatics.scm (htslib-for-samtools-1.2): New variable.
 2021-12-09 11:17:45 +01:00
Ricardo Wurmus
3ebcd637a5
gnu: python2-scipy: Override native inputs. 
* gnu/packages/python-science.scm (python2-scipy)[native-inputs]: Override;
replace gfortran with gfortran-7; add gcc-7.
 2021-12-09 11:17:45 +01:00
Ricardo Wurmus
3cd37c94bd
gnu: python2-matplotlib: Fix mpl_toolkits module. 
* gnu/packages/python-xyz.scm (python2-matplotlib)[arguments]: Add phase
'create-init-file; restore 'sanity-check phase.
 2021-12-09 11:17:45 +01:00
Ricardo Wurmus
b69156ef30
gnu: Add gfortran-7. 
* gnu/packages/gcc.scm (gfortran-7): New variable.
 2021-12-09 11:17:45 +01:00
jgart via Guix-patches via
bfaf6c1801
gnu: emacs-evil-magit: Remove deprecated package. 
* gnu/packages/emacs-xyz.scm (emacs-evil-magit): Delete variable.

evil-magit has been consolidated into evil-collection. The package has been
removed from MELPA since February. See here:
<https://github.com/emacs-evil/evil-magit>.

Signed-off-by: Nicolas Goaziou <mail@nicolasgoaziou.fr>
 2021-12-09 09:17:35 +01:00
Andrew Tropin
1490e02ea2
gnu: Add emacs-dpd. 
* gnu/packages/emacs-xyz.scm (emacs-dpd): New variable.

Signed-off-by: Nicolas Goaziou <mail@nicolasgoaziou.fr>
 2021-12-09 09:13:33 +01:00
Petr Hodina
479742f195
gnu: valeronoi: Update to 0.1.6. 
* gnu/packages/engineering.scm (valeronoi): Update to 0.1.6.

Signed-off-by: Nicolas Goaziou <mail@nicolasgoaziou.fr>
 2021-12-09 09:07:24 +01:00
terramorpha
38ea869b20
gnu: tiramisu: Update to 2.0.20211107. 
* gnu/packages/gnome-xyz.scm (tiramisu): Update to 2.0.20211107.
[native-inputs]: Add vala.

Signed-off-by: Leo Famulari <leo@famulari.name>
 2021-12-08 23:10:25 -05:00
Leo Famulari
37186ec462
gnu: isc-dhcp: Update bundled BIND to 9.11.36 [fixes CVE-2021-25219]. 
* gnu/packages/admin.scm (isc-dhcp)[inputs]:
Update bundled BIND to 9.11.36.

Signed-off-by: Tobias Geerinckx-Rice <me@tobias.gr>
 2021-12-09 01:24:37 +01:00
Tobias Geerinckx-Rice
4ca0e9d5f7
gnu: bind: Update to 9.16.23 [fixes CVE-2021-25218, CVE-2021-25219]. 
* gnu/packages/dns.scm (isc-bind): Update to 9.16.23.
[source]: Add patch.
* gnu/packages/patches/bind-re-add-attr-constructor-priority.patch:
New file.
* gnu/local.mk (dist_patch_DATA): Add it.
 2021-12-09 01:24:37 +01:00
Tobias Geerinckx-Rice
e5e307b676
Revert "installer: Make LUKS2 the default format for encrypted devices" 
This reverts commit a82e9f45fd at the
author's request.  We are not quite ready to boot all resulting
systems.

See <https://logs.guix.gnu.org/guix/2021-12-08.log#231815>.
 2021-12-08 23:23:19 +01:00
Ludovic Courtès
95a4965f2d
gnu: python-slepc4py: Update to 3.16.1. 
This is a followup 5b4d1e57b6.

* gnu/packages/maths.scm (slepc-openmpi)[inputs]: Move ARPACK-NG-OPENMPI to...
[propagated-inputs]: ... here.
(python-slepc4py): Update to 3.16.1.
 2021-12-08 23:04:00 +01:00
Ludovic Courtès
fe55ae488b
gnu: python-petsc4py: Update to 3.16.1. 
This is a followup to 07ac13a26a.

* gnu/packages/maths.scm (python-petsc4py): Update to 3.16.1.
 2021-12-08 22:59:44 +01:00
Ludovic Courtès
3b8825421b
gnu: geeqie: Fix X11 error at startup. 
Fixes <https://issues.guix.gnu.org/52089>.
Reported by Maxim Cournoyer <maxim.cournoyer@gmail.com>.
Patch provided by John Kehayias <john.kehayias@protonmail.com>.

* gnu/packages/patches/geeqie-clutter.patch: New file.
* gnu/packages/image-viewers.scm (geeqie)[sources]: Use it.
* gnu/local.mk (dist_patch_DATA): Add it.
 2021-12-08 22:35:03 +01:00
Petr Hodina
0ba4e94e84
gnu: Add realmd. 
* gnu/packages/admin.scm (realmd): New variable.

Signed-off-by: Leo Famulari <leo@famulari.name>
 2021-12-08 14:26:39 -05:00
Sarah Morgensen
8ac2d303e4
gnu: go-github-com-alcortesm-tgz: Don't reset gzip timestamps. 
The tgz files are committed test fixtures, so don't reset their timestamps.

* gnu/packages/golang.scm (go-github-com-alcortesm-tgz)[arguments]:
Remove 'make-git-checkout-writable' phase.  Delete 'reset-gzip-timestamps' phase
instead.

Signed-off-by: Leo Famulari <leo@famulari.name>
 2021-12-08 13:35:34 -05:00
Sarah Morgensen
93c7a5103d
gnu: Remove go-gopkg.in-check.v1. 
This package is a duplicate of go-gopkg-in-check-v1 in golang.scm,
has no binaries, and has no dependents, so remove it.

* gnu/packages/check.scm (go-gopkg.in-check.v1): Remove variable.

Signed-off-by: Leo Famulari <leo@famulari.name>
 2021-12-08 13:35:34 -05:00
Ludovic Courtès
77c8382bb6
gnu: mumps: Allow compilation with GCC 10. 
Following the suggestion at
<https://community.freefem.org/t/compline-on-macos-10-15-6/543>.

* gnu/packages/maths.scm (mumps)[arguments]: In 'configure' phase, add
'-fallow-argument-mismatch' to 'OPTF'.
 2021-12-08 18:56:53 +01:00
Ludovic Courtès
49599fab56
services: %desktop-services: Use SDDM rather than GDM on non-x86_64. 
This works around the fact that Rust is currently unavailable in Guix on
platforms other than x86_64-linux:

  https://lists.gnu.org/archive/html/guix-devel/2021-11/msg00197.html

* gnu/services/desktop.scm (desktop-services-for-system): New
procedure.
(%desktop-services): Turn into a macro.
 2021-12-08 18:56:52 +01:00
Ludovic Courtès
24ead149db
system: Mark 'services' field as thunked. 
This allows us to make services dependent on (%current-system), for
example.

* gnu/system.scm (<operating-system>)[services]: Mark as thunked.
 2021-12-08 18:56:47 +01:00
Ludovic Courtès
20e6446a68
gnu: idutils: Fix build with glibc 2.33. 
* gnu/packages/idutils.scm (idutils)[source]: Remove reference to 'gets'
from "lib/stdio.in.h".
 2021-12-08 18:55:58 +01:00
Tobias Geerinckx-Rice
9bac41c2b8
gnu: fzf: Wrap with a compliant find(1). 
* gnu/packages/terminals.scm (fzf)[inputs]: Add findutils.
[arguments]: Wrap the ‘fzf’ executable with its /bin directory in $PATH.

Addresses <https://issues.guix.gnu.org/52372>.
 2021-12-08 18:13:48 +01:00
Efraim Flashner
a59abcb350
gnu: libtorrent-rasterbar: Build with default cmake. 
* gnu/packages/bittorrent.scm (libtorrent-rasterbar)[arguments]: Remove
cmake flag.
 2021-12-08 17:36:35 +02:00
Ricardo Wurmus
00ae87c41a
gnu: tadbit: Update to 1.0.1-1.5c4c1dd. 
* gnu/packages/bioinformatics.scm (tadbit): Update to 1.0.1-1.5c4c1dd.
[arguments]: Remove trailing #T from build phases; pass -fcommon to test
binaries; run tests conditionally.
 2021-12-08 16:32:37 +01:00
Ricardo Wurmus
7f4d25f86e
gnu: python2-sphinx: Remove websupport test. 
* gnu/packages/sphinx.scm (python2-sphinx)[arguments]: Remove websupport test
file.
 2021-12-08 16:13:08 +01:00
Ricardo Wurmus
68619cad28
gnu: python2-sphinxcontrib-websupport: Downgrade to 1.1.2. 
* gnu/packages/sphinx.scm (python2-sphinxcontrib-websupport): Downgrade to
1.1.2.
[arguments]: Override; delete 'sanity-check phase.
[propagated-inputs]: Override and add python2-six.
(python-sphinxcontrib-websupport)[properties]: Record python2-variant.
 2021-12-08 16:13:08 +01:00
Ricardo Wurmus
a4a7c78f68
gnu: python2-jinja2: Downgrade to 2.11.3 
* gnu/packages/python-xyz.scm (python2-jinja2): Downgrade to the last version
supporting Python 2.
(python-jinja2)[properties]: Record python2-variant.
 2021-12-08 16:13:08 +01:00
Tobias Geerinckx-Rice
852ad65bd4
gnu: fastboot: Fix ‘--version’ output. 
* gnu/packages/android.scm (fastboot)[arguments]: Replace broken
‘git rev-parse’ shell command with the actual package VERSION.

Reported by kwjc on #guix.
 2021-12-08 15:42:33 +01:00
Zhu Zihao
5573d98f81
gnu: rtl8821ce-linux-module: Update to 0.0.0-4-ca204c6. 
Fixes compatibility with linux-libre@5.15:

  […]/source/core/rtw_br_ext.c:20:11: fatal error: net/ipx.h:
  No such file or directory
    #include <net/ipx.h>
             ^~~~~~~~~~~
  compilation terminated.

* gnu/packages/linux.scm (rtl8821ce-linux-module):
Update to 0.0.0-4-ca204c6.

Signed-off-by: Tobias Geerinckx-Rice <me@tobias.gr>
 2021-12-08 15:42:33 +01:00
Ricardo Wurmus
14ed9b049e
gnu: python2-markupsafe: Downgrade to 1.1.1. 
* gnu/packages/python-xyz.scm (python2-markupsafe): Downgrade to 1.1.1,
because that's the last version to support Python 2.
 2021-12-08 14:43:38 +01:00
Ricardo Wurmus
c8060055de
gnu: ocaml-mcl: Add -fcommon to compiler flags. 
* gnu/packages/machine-learning.scm (ocaml-mcl)[arguments]: Add -fcommon.
 2021-12-08 14:31:54 +01:00
Ricardo Wurmus
b835d10d61
gnu: paml: Pass -fcommon to compiler. 
* gnu/packages/bioinformatics.scm (paml)[arguments]: Set CFLAGS.
 2021-12-08 14:31:54 +01:00
Ricardo Wurmus
2157d82ed3
gnu: paml: Remove trailing #T. 
* gnu/packages/bioinformatics.scm (paml)[arguments]: Remove trailing #T from
build phases.
 2021-12-08 14:31:54 +01:00
Ricardo Wurmus
76b39f03d2
gnu: sambamba: Remove trailing #T. 
* gnu/packages/bioinformatics.scm (sambamba)[arguments]: Remove trailing #T
from build phases.
 2021-12-08 14:31:54 +01:00
Ricardo Wurmus
62da1b34d1
gnu: discrover: Add texlive-fonts-ec to inputs. 
* gnu/packages/bioinformatics.scm (discrover)[native-inputs]: Add
texlive-fonts-ec.
 2021-12-08 14:31:54 +01:00
Ricardo Wurmus
62e196608c
gnu: discrover: Remove trailing #T. 
* gnu/packages/bioinformatics.scm (discrover)[arguments]: Remove trailing #T
from build phases.
 2021-12-08 14:31:54 +01:00
Ricardo Wurmus
1f63c46a1c
gnu: tbsp: Update to 1.0.0-2.dc30c03. 
* gnu/packages/bioinformatics.scm (tbsp): Update to 1.0.0-2.dc30c03.
[arguments]: Relax requirement on matplot.  This may turn out to be a mistake.
[inputs]: Replace python-biopython with python-biopython-1.73.
 2021-12-08 14:31:54 +01:00
Ricardo Wurmus
1f7c06965c
gnu: mantis: Update to 0.1-2.b6979a2. 
* gnu/packages/bioinformatics.scm (mantis): Update to 0.1-2.b6979a2.
[arguments]: Disable the use of SSE4.2 instructions.
[native-inputs]: Build with GCC 7.
 2021-12-08 14:31:53 +01:00
Ricardo Wurmus
738f22fa06
gnu: imp: Disable tests. 
* gnu/packages/bioinformatics.scm (imp)[arguments]: Disable unreliable test
suite.
 2021-12-08 14:31:53 +01:00
Ricardo Wurmus
acfbb53222
gnu: snap-aligner: Update to 2.0.0. 
* gnu/packages/bioinformatics.scm (snap-aligner): Update to 2.0.0.
 2021-12-08 14:31:53 +01:00
Ricardo Wurmus
42a7b5215b
gnu: snap-aligner: Remove trailing #T. 
* gnu/packages/bioinformatics.scm (snap-aligner)[arguments]: Remove trailing #T
from 'install phase.
 2021-12-08 14:31:53 +01:00
Ricardo Wurmus
7c58677a29
gnu: snap-aligner: Run tests conditionally. 
* gnu/packages/bioinformatics.scm (snap-aligner)[arguments]: Respect TESTS?
option.
 2021-12-08 14:31:53 +01:00
Ricardo Wurmus
298a8d0b89
gnu: khmer: Cythonize source files. 
* gnu/packages/bioinformatics.scm (khmer)[source]: Remove generated files.
[arguments]: Add phase 'do-use-cython to patch the setup.py to generate cpp
files from Cython sources; add 'build-extensions phase; replace 'check phase.
 2021-12-08 14:31:53 +01:00
Ricardo Wurmus
9a19e8f609
gnu: cwltool: Update to 3.1.20211107152837. 
* gnu/packages/bioinformatics.scm (cwltool): Update to 3.1.20211107152837.
[arguments]: Adjust phase 'loosen-version-restrictions; remove trailing #T
from build phases; fix /bin/sh invocations in test files.
 2021-12-08 14:31:52 +01:00
Guillaume Le Vaillant
ac53cbb368
gnu: monero: Improve check phase. 
* gnu/packages/finance.scm (monero)[arguments]: Take 'tests?' parameter
  into consideration in 'check' phase.
 2021-12-08 13:31:37 +01:00
Guillaume Le Vaillant
3ccf33bbe6
gnu: monero-gui: Update to 0.17.3.0. 
* gnu/packages/finance.scm (monero-gui): Update to 0.17.3.0.
 2021-12-08 13:31:37 +01:00
Guillaume Le Vaillant
107481ea0f
gnu: monero: Update to 0.17.3.0. 
* gnu/packages/finance.scm (monero): Update to 0.17.3.0.
* gnu/packages/patches/monero-use-system-miniupnpc.patch: Update patch.
 2021-12-08 13:31:37 +01:00
Efraim Flashner
c9b42242f9
gnu: python-userspacefs: Update to 2.0.4. 
* gnu/packages/python-xyz.scm (python-userspacefs): Update to 2.0.4.
 2021-12-08 12:34:13 +02:00
Efraim Flashner
f45e304aa4
gnu: python-dropbox: Update to 11.25.0. 
* gnu/packages/file-systems.scm (python-dropbox): Update to 11.25.0.
[propagated-inputs]: Remove python-certifi, python-chardet, and python-urllib3.
 2021-12-08 11:51:03 +02:00
Marius Bakke
ddcec589bc
gnu: lollypop: Update to 1.4.24. 
* gnu/packages/gnome.scm (lollypop): Update to 1.4.24.
[native-inputs]: Remove INTLTOOL and ITSTOOL.  Add GETTEXT-MINIMAL.
 2021-12-08 08:46:28 +01:00
Marius Bakke
2b8b89b7ab
gnu: python-toolz: Update to 0.11.2. 
* gnu/packages/python-xyz.scm (python-toolz): Update to 0.11.2.
 2021-12-08 08:46:28 +01:00
Marius Bakke
6f29d34bb2
gnu: python-django: Update to 3.2.10 [fixes CVE-2021-4442]. 
* gnu/packages/django.scm (python-django): Update to 3.2.10.
 2021-12-08 08:46:28 +01:00
Marius Bakke
b5e69cf6c1
gnu: python-django@2.2: Update to 2.2.25 [fixes CVE-2021-4442]. 
* gnu/packages/django.scm (python-django-2.2): Update to 2.2.25.
 2021-12-08 08:46:28 +01:00