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99723 Commits

Author SHA1 Message Date
Ricardo Wurmus
f80e8e4574
gnu: r-cplm: Update to 0.7-11. 
* gnu/packages/cran.scm (r-cplm): Update to 0.7-11.
 2023-04-29 20:28:08 +02:00
Ricardo Wurmus
5f061c25f3
gnu: r-castor: Update to 1.7.9. 
* gnu/packages/cran.scm (r-castor): Update to 1.7.9.
 2023-04-29 20:28:08 +02:00
Ricardo Wurmus
2b08f6874e
gnu: r-tictoc: Update to 1.2. 
* gnu/packages/bioinformatics.scm (r-tictoc): Update to 1.2.
 2023-04-29 20:28:08 +02:00
Ricardo Wurmus
49afe64152
gnu: r-radiant-data: Update to 1.5.6. 
* gnu/packages/cran.scm (r-radiant-data): Update to 1.5.6.
[source]: Delete minified JavaScript.
[arguments]: Add build phase 'process-javascript.
[native-inputs]: Add sources for html2canvas.js.
 2023-04-29 20:28:08 +02:00
Ricardo Wurmus
376c52a949
gnu: r-rliger: Strip jar timestamps. 
* gnu/packages/cran.scm (r-rliger)[arguments]: Add phase
'strip-jar-timestamps; remove trailing #T; add ant-build-system modules.
[source]: Simplify snippet.
[native-inputs]: Add zip.
 2023-04-29 20:28:08 +02:00
Ricardo Wurmus
46d78bf045
gnu: r-hpar: Avoid internet access. 
ExperimentHub::createHubAccessors needs internet access.  When R tests if the
package can be loaded it runs zzz.R, which contains the call to
createHubAccessors.  We set the variable GUIX_BUILD to conditionally disable
this call.

* gnu/packages/bioconductor.scm (r-hpar)[arguments]: Add two build phases:
'set-HOME and 'avoid-internet-access.
 2023-04-29 20:28:08 +02:00
Ricardo Wurmus
9a2908211c
gnu: r-coin: Delete file with bad encoding. 
* gnu/packages/cran.scm (r-coin)[arguments]: Add phase
'remove-test-file-with-latin-encoding.
 2023-04-29 20:28:08 +02:00
Ricardo Wurmus
63dea3caf0
gnu: r-cplm: Fix build with R 4.3.0. 
* gnu/packages/cran.scm (r-cplm)[arguments]: Update headers to find definition
for GET_SLOT.
 2023-04-29 20:28:08 +02:00
Ricardo Wurmus
6cb123b190
gnu: r-phyloseq: Update to 1.44.0. 
* gnu/packages/bioconductor.scm (r-phyloseq): Update to 1.44.0.
 2023-04-29 20:28:08 +02:00
Ricardo Wurmus
e0c28e52e4
gnu: r-tximeta: Update to 1.18.0. 
* gnu/packages/bioconductor.scm (r-tximeta): Update to 1.18.0.
 2023-04-29 20:28:08 +02:00
Ricardo Wurmus
a605826139
gnu: r-tricycle: Update to 1.8.0. 
* gnu/packages/bioconductor.scm (r-tricycle): Update to 1.8.0.
 2023-04-29 20:28:07 +02:00
Ricardo Wurmus
c33697b714
gnu: r-biscuiteer: Update to 1.14.0. 
* gnu/packages/bioconductor.scm (r-biscuiteer): Update to 1.14.0.
 2023-04-29 20:28:07 +02:00
Ricardo Wurmus
04978d4592
gnu: r-omnipathr: Update to 3.8.0. 
* gnu/packages/bioconductor.scm (r-omnipathr): Update to 3.8.0.
 2023-04-29 20:28:07 +02:00
Ricardo Wurmus
b2a3e274ec
gnu: r-omicade4: Update to 1.40.0. 
* gnu/packages/bioconductor.scm (r-omicade4): Update to 1.40.0.
 2023-04-29 20:28:07 +02:00
Ricardo Wurmus
15f364a933
gnu: r-dmrseq: Update to 1.20.0. 
* gnu/packages/bioconductor.scm (r-dmrseq): Update to 1.20.0.
 2023-04-29 20:28:07 +02:00
Ricardo Wurmus
3862877bb2
gnu: r-dada2: Update to 1.28.0. 
* gnu/packages/bioconductor.scm (r-dada2): Update to 1.28.0.
 2023-04-29 20:28:07 +02:00
Ricardo Wurmus
56586f9b9e
gnu: r-bsseq: Update to 1.36.0. 
* gnu/packages/bioconductor.scm (r-bsseq): Update to 1.36.0.
 2023-04-29 20:28:07 +02:00
Ricardo Wurmus
096133af16
gnu: r-biotmle: Update to 1.24.0. 
* gnu/packages/bioconductor.scm (r-biotmle): Update to 1.24.0.
 2023-04-29 20:28:07 +02:00
Ricardo Wurmus
0f594abe26
gnu: r-biotip: Update to 1.14.0. 
* gnu/packages/bioconductor.scm (r-biotip): Update to 1.14.0.
 2023-04-29 20:28:07 +02:00
Ricardo Wurmus
5a5d466e15
gnu: r-bioqc: Update to 1.28.0. 
* gnu/packages/bioconductor.scm (r-bioqc): Update to 1.28.0.
 2023-04-29 20:28:07 +02:00
Ricardo Wurmus
cb91d8ff79
gnu: r-bionet: Update to 1.60.0. 
* gnu/packages/bioconductor.scm (r-bionet): Update to 1.60.0.
 2023-04-29 20:28:07 +02:00
Ricardo Wurmus
e1292069fc
gnu: r-bionero: Update to 1.8.0. 
* gnu/packages/bioconductor.scm (r-bionero): Update to 1.8.0.
 2023-04-29 20:28:07 +02:00
Ricardo Wurmus
26c76918cb
gnu: r-biomvcclass: Update to 1.68.0. 
* gnu/packages/bioconductor.scm (r-biomvcclass): Update to 1.68.0.
 2023-04-29 20:28:07 +02:00
Ricardo Wurmus
ce9ee69644
gnu: r-mvcclass: Update to 1.74.0. 
* gnu/packages/bioconductor.scm (r-mvcclass): Update to 1.74.0.
 2023-04-29 20:28:07 +02:00
Ricardo Wurmus
3d49b388a5
gnu: r-biomformat: Update to 1.28.0. 
* gnu/packages/bioconductor.scm (r-biomformat): Update to 1.28.0.
 2023-04-29 20:28:07 +02:00
Ricardo Wurmus
c10979dcbe
gnu: r-biodb: Update to 1.8.0. 
* gnu/packages/bioconductor.scm (r-biodb): Update to 1.8.0.
 2023-04-29 20:28:07 +02:00
Ricardo Wurmus
4eb1e7e542
gnu: r-biocdockermanager: Update to 1.11.0. 
* gnu/packages/bioconductor.scm (r-biocdockermanager): Update to 1.11.0.
 2023-04-29 20:28:07 +02:00
Ricardo Wurmus
4684b0d333
gnu: r-biocthis: Update to 1.10.0. 
* gnu/packages/bioconductor.scm (r-biocthis): Update to 1.10.0.
 2023-04-29 20:28:07 +02:00
Ricardo Wurmus
fbd4e9195f
gnu: r-basilisk: Update to 1.12.0. 
* gnu/packages/bioconductor.scm (r-basilisk): Update to 1.12.0.
 2023-04-29 20:28:07 +02:00
Ricardo Wurmus
d91cc19ee9
gnu: r-basilisk-utils: Update to 1.12.0. 
* gnu/packages/bioconductor.scm (r-basilisk-utils): Update to 1.12.0.
 2023-04-29 20:28:07 +02:00
Ricardo Wurmus
ad0efa110e
gnu: r-dir-expiry: Update to 1.8.0. 
* gnu/packages/bioconductor.scm (r-dir-expiry): Update to 1.8.0.
 2023-04-29 20:28:07 +02:00
Ricardo Wurmus
1b80b39aa7
gnu: r-genetclassifier: Update to 1.40.0. 
* gnu/packages/bioconductor.scm (r-genetclassifier): Update to 1.40.0.
 2023-04-29 20:28:07 +02:00
Ricardo Wurmus
939155e312
gnu: r-minet: Update to 3.58.0. 
* gnu/packages/bioconductor.scm (r-minet): Update to 3.58.0.
 2023-04-29 20:28:07 +02:00
Ricardo Wurmus
d297d24edb
gnu: r-biobtreer: Update to 1.12.0. 
* gnu/packages/bioconductor.scm (r-biobtreer): Update to 1.12.0.
 2023-04-29 20:28:07 +02:00
Ricardo Wurmus
1ff662c8e2
gnu: r-bgeedb: Update to 2.26.0. 
* gnu/packages/bioconductor.scm (r-bgeedb): Update to 2.26.0.
 2023-04-29 20:28:07 +02:00
Ricardo Wurmus
189f9d805e
gnu: r-bgeecall: Update to 1.16.0. 
* gnu/packages/bioconductor.scm (r-bgeecall): Update to 1.16.0.
 2023-04-29 20:28:07 +02:00
Ricardo Wurmus
4dd9fdb68f
gnu: r-beclear: Update to 2.16.0. 
* gnu/packages/bioconductor.scm (r-beclear): Update to 2.16.0.
 2023-04-29 20:28:07 +02:00
Ricardo Wurmus
0d879deae1
gnu: r-megadepth: Update to 1.9.0. 
* gnu/packages/bioconductor.scm (r-megadepth): Update to 1.9.0.
 2023-04-29 20:28:07 +02:00
Ricardo Wurmus
c09a9bc427
gnu: r-ballgown: Update to 2.32.0. 
* gnu/packages/bioconductor.scm (r-ballgown): Update to 2.32.0.
 2023-04-29 20:28:07 +02:00
Ricardo Wurmus
e5e7089db5
gnu: r-guitar: Update to 2.16.0. 
* gnu/packages/bioconductor.scm (r-guitar): Update to 2.16.0.
 2023-04-29 20:28:07 +02:00
Ricardo Wurmus
3616dd923f
gnu: r-chromstar: Update to 1.26.0. 
* gnu/packages/bioconductor.scm (r-chromstar): Update to 1.26.0.
 2023-04-29 20:28:06 +02:00
Ricardo Wurmus
1b3be92024
gnu: r-snpstats: Update to 1.50.0. 
* gnu/packages/bioconductor.scm (r-snpstats): Update to 1.50.0.
 2023-04-29 20:28:06 +02:00
Ricardo Wurmus
72288df46a
gnu: r-snapcgh: Update to 1.70.0. 
* gnu/packages/bioconductor.scm (r-snapcgh): Update to 1.70.0.
 2023-04-29 20:28:06 +02:00
Ricardo Wurmus
61432d53ff
gnu: r-pathview: Update to 1.40.0. 
* gnu/packages/bioconductor.scm (r-pathview): Update to 1.40.0.
 2023-04-29 20:28:06 +02:00
Ricardo Wurmus
ef6059cf27
gnu: r-ldblock: Update to 1.30.0. 
* gnu/packages/bioconductor.scm (r-ldblock): Update to 1.30.0.
[propagated-inputs]: Remove r-ensdb-hsapiens-v75, r-ensembldb, r-genomeinfodb,
r-genomicfiles, r-rsamtools, r-snpstats, and r-variantannotation; add
r-rlang.
 2023-04-29 20:28:06 +02:00
Ricardo Wurmus
c00d4a394d
gnu: r-kegggraph: Update to 1.60.0. 
* gnu/packages/bioconductor.scm (r-kegggraph): Update to 1.60.0.
 2023-04-29 20:28:06 +02:00
Ricardo Wurmus
70514e0281
gnu: r-gwascat: Update to 2.32.0. 
* gnu/packages/bioconductor.scm (r-gwascat): Update to 2.32.0.
 2023-04-29 20:28:06 +02:00
Ricardo Wurmus
e8a52e54f7
gnu: r-gviz: Update to 1.44.0. 
* gnu/packages/bioconductor.scm (r-gviz): Update to 1.44.0.
 2023-04-29 20:28:06 +02:00
Ricardo Wurmus
311339801e
gnu: r-ggbio: Update to 1.48.0. 
* gnu/packages/bioconductor.scm (r-ggbio): Update to 1.48.0.
 2023-04-29 20:28:06 +02:00
Ricardo Wurmus
764220f848
gnu: r-erma: Update to 1.16.0. 
* gnu/packages/bioconductor.scm (r-erma): Update to 1.16.0.
 2023-04-29 20:28:06 +02:00
Ricardo Wurmus
bc7db31ceb
gnu: r-catalyst: Update to 1.24.0. 
* gnu/packages/bioconductor.scm (r-catalyst): Update to 1.24.0.
 2023-04-29 20:28:06 +02:00
Ricardo Wurmus
d1e16723dd
gnu: r-msmstests: Update to 1.38.0. 
* gnu/packages/bioconductor.scm (r-msmstests): Update to 1.38.0.
 2023-04-29 20:28:06 +02:00
Ricardo Wurmus
0d854ac754
gnu: r-msmseda: Update to 1.38.0. 
* gnu/packages/bioconductor.scm (r-msmseda): Update to 1.38.0.
 2023-04-29 20:28:06 +02:00
Ricardo Wurmus
bca0afda01
gnu: r-biocio: Update to 1.10.0. 
* gnu/packages/bioconductor.scm (r-biocio): Update to 1.10.0.
 2023-04-29 20:28:06 +02:00
Ricardo Wurmus
6459537f90
gnu: r-msfeatures: Update to 1.8.0. 
* gnu/packages/bioconductor.scm (r-msfeatures): Update to 1.8.0.
 2023-04-29 20:28:06 +02:00
Ricardo Wurmus
f4c4bc5473
gnu: r-mscoreutils: Update to 1.12.0. 
* gnu/packages/bioconductor.scm (r-mscoreutils): Update to 1.12.0.
 2023-04-29 20:28:06 +02:00
Ricardo Wurmus
643e63ef61
gnu: r-delayedmatrixstats: Update to 1.22.0. 
* gnu/packages/bioconductor.scm (r-delayedmatrixstats): Update to 1.22.0.
 2023-04-29 20:28:06 +02:00
Ricardo Wurmus
4b4df8d533
gnu: r-sparsematrixstats: Update to 1.12.0. 
* gnu/packages/bioconductor.scm (r-sparsematrixstats): Update to 1.12.0.
 2023-04-29 20:28:06 +02:00
Ricardo Wurmus
1435a289dd
gnu: r-scran: Update to 1.28.0. 
* gnu/packages/bioconductor.scm (r-scran): Update to 1.28.0.
 2023-04-29 20:28:06 +02:00
Ricardo Wurmus
c3056799b3
gnu: r-scater: Update to 1.28.0. 
* gnu/packages/bioconductor.scm (r-scater): Update to 1.28.0.
[propagated-inputs]: Remove r-gridextra; add r-densvis.
 2023-04-29 20:28:06 +02:00
Ricardo Wurmus
febe8360c3
gnu: r-scuttle: Update to 1.10.0. 
* gnu/packages/bioconductor.scm (r-scuttle): Update to 1.10.0.
 2023-04-29 20:28:06 +02:00
Ricardo Wurmus
8dc03857a6
gnu: r-singler: Update to 2.2.0. 
* gnu/packages/bioconductor.scm (r-singler): Update to 2.2.0.
 2023-04-29 20:28:06 +02:00
Ricardo Wurmus
b0a6411b85
gnu: r-singlecellexperiment: Update to 1.22.0. 
* gnu/packages/bioconductor.scm (r-singlecellexperiment): Update to 1.22.0.
 2023-04-29 20:28:06 +02:00
Ricardo Wurmus
09ada1eb1e
gnu: r-chromvar: Update to 1.22.0. 
* gnu/packages/bioconductor.scm (r-chromvar): Update to 1.22.0.
 2023-04-29 20:28:06 +02:00
Ricardo Wurmus
0609a92c0b
gnu: r-motifmatchr: Update to 1.22.0. 
* gnu/packages/bioconductor.scm (r-motifmatchr): Update to 1.22.0.
 2023-04-29 20:28:06 +02:00
Ricardo Wurmus
6263d39069
gnu: r-maftools: Update to 2.16.0. 
* gnu/packages/bioconductor.scm (r-maftools): Update to 2.16.0.
 2023-04-29 20:28:06 +02:00
Ricardo Wurmus
99c001303d
gnu: r-tfbstools: Update to 1.38.0. 
* gnu/packages/bioconductor.scm (r-tfbstools): Update to 1.38.0.
 2023-04-29 20:28:06 +02:00
Ricardo Wurmus
5ab3d66ffc
gnu: r-cner: Update to 1.36.0. 
* gnu/packages/bioconductor.scm (r-cner): Update to 1.36.0.
 2023-04-29 20:28:06 +02:00
Ricardo Wurmus
b9b6c29a75
gnu: r-beadarraysnp: Update to 1.66.0. 
* gnu/packages/bioconductor.scm (r-beadarraysnp): Update to 1.66.0.
 2023-04-29 20:28:06 +02:00
Ricardo Wurmus
e76467b72c
gnu: r-beachmat: Update to 2.16.0. 
* gnu/packages/bioconductor.scm (r-beachmat): Update to 2.16.0.
 2023-04-29 20:28:06 +02:00
Ricardo Wurmus
f482bb1256
gnu: r-rhdf5lib: Update to 1.22.0. 
* gnu/packages/bioconductor.scm (r-rhdf5lib): Update to 1.22.0.
 2023-04-29 20:28:05 +02:00
Ricardo Wurmus
582dac2949
gnu: r-hdf5array: Update to 1.28.0. 
* gnu/packages/bioconductor.scm (r-hdf5array): Update to 1.28.0.
 2023-04-29 20:28:05 +02:00
Ricardo Wurmus
143b70c92b
gnu: r-hitc: Update to 1.44.0. 
* gnu/packages/bioconductor.scm (r-hitc): Update to 1.44.0.
 2023-04-29 20:28:05 +02:00
Ricardo Wurmus
765b41564a
gnu: r-fithic: Update to 1.26.0. 
* gnu/packages/bioconductor.scm (r-fithic): Update to 1.26.0.
 2023-04-29 20:28:05 +02:00
Ricardo Wurmus
8866d47bce
gnu: r-fishpond: Update to 2.6.0. 
* gnu/packages/bioconductor.scm (r-fishpond): Update to 2.6.0.
[inputs]: Remove zlib.
 2023-04-29 20:28:05 +02:00
Ricardo Wurmus
85bc989a66
gnu: r-rgraphviz: Update to 2.44.0. 
* gnu/packages/bioconductor.scm (r-rgraphviz): Update to 2.44.0.
 2023-04-29 20:28:05 +02:00
Ricardo Wurmus
2e81140c18
gnu: r-s4vectors: Update to 0.38.0. 
* gnu/packages/bioconductor.scm (r-s4vectors): Update to 0.38.0.
[native-inputs]: Add r-knitr.
 2023-04-29 20:28:05 +02:00
Ricardo Wurmus
ed6d919ef0
gnu: r-preprocesscore: Update to 1.62.0. 
* gnu/packages/bioconductor.scm (r-preprocesscore): Update to 1.62.0.
 2023-04-29 20:28:05 +02:00
Ricardo Wurmus
ae8956bbc8
gnu: r-icens: Update to 1.72.0. 
* gnu/packages/bioconductor.scm (r-icens): Update to 1.72.0.
 2023-04-29 20:28:05 +02:00
Ricardo Wurmus
ebd0bdd84c
gnu: r-m3c: Update to 1.22.0. 
* gnu/packages/bioconductor.scm (r-m3c): Update to 1.22.0.
 2023-04-29 20:28:05 +02:00
Ricardo Wurmus
aff09ecb05
gnu: r-rgreat: Update to 2.2.0. 
* gnu/packages/bioconductor.scm (r-rgreat): Update to 2.2.0.
 2023-04-29 20:28:05 +02:00
Ricardo Wurmus
bd1b41e8d1
gnu: r-pcatools: Update to 2.12.0. 
* gnu/packages/bioconductor.scm (r-pcatools): Update to 2.12.0.
 2023-04-29 20:28:05 +02:00
Ricardo Wurmus
f2ce4a037f
gnu: r-biodist: Update to 1.72.0. 
* gnu/packages/bioconductor.scm (r-biodist): Update to 1.72.0.
 2023-04-29 20:28:05 +02:00
Ricardo Wurmus
2f1c5f361f
gnu: r-biocworkflowtools: Update to 1.26.0. 
* gnu/packages/bioconductor.scm (r-biocworkflowtools): Update to 1.26.0.
 2023-04-29 20:28:05 +02:00
Ricardo Wurmus
37de521f22
gnu: r-biocset: Update to 1.14.0. 
* gnu/packages/bioconductor.scm (r-biocset): Update to 1.14.0.
 2023-04-29 20:28:05 +02:00
Ricardo Wurmus
72ba2d8f48
gnu: r-biocpkgtools: Update to 1.18.0. 
* gnu/packages/bioconductor.scm (r-biocpkgtools): Update to 1.18.0.
 2023-04-29 20:28:05 +02:00
Ricardo Wurmus
8f9bd84fd9
gnu: r-biocor: Update to 1.24.0. 
* gnu/packages/bioconductor.scm (r-biocor): Update to 1.24.0.
 2023-04-29 20:28:05 +02:00
Ricardo Wurmus
d63b92465b
gnu: r-bioconcotk: Update to 1.20.0. 
* gnu/packages/bioconductor.scm (r-bioconcotk): Update to 1.20.0.
[propagated-inputs]: Add r-mass.
 2023-04-29 20:28:05 +02:00
Ricardo Wurmus
94ab8db2d7
gnu: r-multiassayexperiment: Update to 1.26.0. 
* gnu/packages/bioconductor.scm (r-multiassayexperiment): Update to 1.26.0.
[native-inputs]: Add r-r-rsp.
 2023-04-29 20:28:05 +02:00
Ricardo Wurmus
621526d5e3
gnu: r-grohmm: Update to 1.34.0. 
* gnu/packages/bioconductor.scm (r-grohmm): Update to 1.34.0.
 2023-04-29 20:28:05 +02:00
Ricardo Wurmus
29f1477229
gnu: r-experimenthub: Update to 2.8.0. 
* gnu/packages/bioconductor.scm (r-experimenthub): Update to 2.8.0.
[propagated-inputs]: Remove r-curl.
 2023-04-29 20:28:05 +02:00
Ricardo Wurmus
d0682c7c04
gnu: r-biocviews: Update to 1.68.0. 
* gnu/packages/bioconductor.scm (r-biocviews): Update to 1.68.0.
 2023-04-29 20:28:05 +02:00
Ricardo Wurmus
0c2009a1b0
gnu: r-biocstyle: Update to 2.28.0. 
* gnu/packages/bioconductor.scm (r-biocstyle): Update to 2.28.0.
 2023-04-29 20:28:05 +02:00
Ricardo Wurmus
d277f69643
gnu: r-biocgraph: Update to 1.62.0. 
* gnu/packages/bioconductor.scm (r-biocgraph): Update to 1.62.0.
 2023-04-29 20:28:05 +02:00
Ricardo Wurmus
b5133a0dc3
gnu: r-bioccheck: Update to 1.36.0. 
* gnu/packages/bioconductor.scm (r-bioccheck): Update to 1.36.0.
[propagated-inputs]: Add r-biocfilecache.
 2023-04-29 20:28:05 +02:00
Ricardo Wurmus
81de52f013
gnu: r-biocbaseutils: Update to 1.2.0. 
* gnu/packages/bioconductor.scm (r-biocbaseutils): Update to 1.2.0.
 2023-04-29 20:28:05 +02:00
Ricardo Wurmus
39defa2968
gnu: r-ebarrays: Update to 2.64.0. 
* gnu/packages/bioconductor.scm (r-ebarrays): Update to 2.64.0.
 2023-04-29 20:28:05 +02:00
Ricardo Wurmus
f7e7bb2007
gnu: r-reactomepa: Update to 1.44.0. 
* gnu/packages/bioconductor.scm (r-reactomepa): Update to 1.44.0.
 2023-04-29 20:28:05 +02:00
Ricardo Wurmus
2474b005cd
gnu: r-graphite: Update to 1.46.0. 
* gnu/packages/bioconductor.scm (r-graphite): Update to 1.46.0.
[native-inputs]: Add r-r-rsp.
 2023-04-29 20:28:05 +02:00
Ricardo Wurmus
b6350013f8
gnu: r-biobroom: Update to 1.32.0. 
* gnu/packages/bioconductor.scm (r-biobroom): Update to 1.32.0.
 2023-04-29 20:28:04 +02:00
Ricardo Wurmus
9adef62a5b
gnu: r-bioassayr: Update to 1.38.0. 
* gnu/packages/bioconductor.scm (r-bioassayr): Update to 1.38.0.
 2023-04-29 20:28:04 +02:00
Ricardo Wurmus
29944820e1
gnu: r-fmcsr: Update to 1.42.0. 
* gnu/packages/bioconductor.scm (r-fmcsr): Update to 1.42.0.
 2023-04-29 20:28:04 +02:00
Ricardo Wurmus
89fce342bb
gnu: r-chemminer: Update to 3.52.0. 
* gnu/packages/bioconductor.scm (r-chemminer): Update to 3.52.0.
 2023-04-29 20:28:04 +02:00
Ricardo Wurmus
02451fb098
gnu: r-bigpint: Update to 1.15.0. 
* gnu/packages/bioconductor.scm (r-bigpint): Update to 1.15.0.
 2023-04-29 20:28:04 +02:00
Ricardo Wurmus
d3f1ba4bf2
gnu: r-biggr: Update to 1.36.0. 
* gnu/packages/bioconductor.scm (r-biggr): Update to 1.36.0.
 2023-04-29 20:28:04 +02:00
Ricardo Wurmus
c0b7b4ed00
gnu: r-hyperdraw: Update to 1.52.0. 
* gnu/packages/bioconductor.scm (r-hyperdraw): Update to 1.52.0.
 2023-04-29 20:28:04 +02:00
Ricardo Wurmus
7f03f14e5f
gnu: r-hypergraph: Update to 1.72.0. 
* gnu/packages/bioconductor.scm (r-hypergraph): Update to 1.72.0.
 2023-04-29 20:28:04 +02:00
Ricardo Wurmus
c6354be8c6
gnu: r-rsbml: Update to 2.58.0. 
* gnu/packages/bioconductor.scm (r-rsbml): Update to 2.58.0.
 2023-04-29 20:28:04 +02:00
Ricardo Wurmus
7d2852ed0e
gnu: r-bifet: Update to 1.20.0. 
* gnu/packages/bioconductor.scm (r-bifet): Update to 1.20.0.
 2023-04-29 20:28:04 +02:00
Ricardo Wurmus
f273e6f729
gnu: r-bicare: Update to 1.58.0. 
* gnu/packages/bioconductor.scm (r-bicare): Update to 1.58.0.
[propagated-inputs]: Add r-go-db.
 2023-04-29 20:28:04 +02:00
Ricardo Wurmus
807271f5b5
gnu: r-bhc: Update to 1.52.0. 
* gnu/packages/bioconductor.scm (r-bhc): Update to 1.52.0.
 2023-04-29 20:28:04 +02:00
Ricardo Wurmus
90fc4b4a51
gnu: r-bgx: Update to 1.66.0. 
* gnu/packages/bioconductor.scm (r-bgx): Update to 1.66.0.
 2023-04-29 20:28:04 +02:00
Ricardo Wurmus
ee4f843e46
gnu: r-bgmix: Update to 1.59.0. 
* gnu/packages/bioconductor.scm (r-bgmix): Update to 1.59.0.
[arguments]: Add build phase 'avoid-naming-conflict.
 2023-04-29 20:28:04 +02:00
Ricardo Wurmus
e8d5475045
gnu: r-acde: Update to 1.30.0. 
* gnu/packages/bioconductor.scm (r-acde): Update to 1.30.0.
 2023-04-29 20:28:04 +02:00
Ricardo Wurmus
89a1bc74ce
gnu: r-acme: Update to 2.56.0. 
* gnu/packages/bioconductor.scm (r-acme): Update to 2.56.0.
 2023-04-29 20:28:04 +02:00
Ricardo Wurmus
f09fd77618
gnu: r-acgh: Update to 1.78.0. 
* gnu/packages/bioconductor.scm (r-acgh): Update to 1.78.0.
 2023-04-29 20:28:04 +02:00
Ricardo Wurmus
9b4ebaec75
gnu: r-ace: Update to 1.18.0. 
* gnu/packages/bioconductor.scm (r-ace): Update to 1.18.0.
 2023-04-29 20:28:04 +02:00
Ricardo Wurmus
b212b9ca62
gnu: r-universalmotif: Update to 1.18.0. 
* gnu/packages/bioconductor.scm (r-universalmotif): Update to 1.18.0.
[propagated-inputs]: Add r-matrixgenerics.
 2023-04-29 20:28:04 +02:00
Ricardo Wurmus
47b35d3459
gnu: r-unifiedwmwqpcr: Update to 1.36.0. 
* gnu/packages/bioconductor.scm (r-unifiedwmwqpcr): Update to 1.36.0.
 2023-04-29 20:28:04 +02:00
Ricardo Wurmus
f7c2c248d5
gnu: r-htqpcr: Update to 1.54.0. 
* gnu/packages/bioconductor.scm (r-htqpcr): Update to 1.54.0.
 2023-04-29 20:28:04 +02:00
Ricardo Wurmus
b352e03d83
gnu: r-variancepartition: Update to 1.30.0. 
* gnu/packages/bioconductor.scm (r-variancepartition): Update to 1.30.0.
 2023-04-29 20:28:04 +02:00
Ricardo Wurmus
c1b48012e6
gnu: r-variantfiltering: Update to 1.36.0. 
* gnu/packages/bioconductor.scm (r-variantfiltering): Update to 1.36.0.
 2023-04-29 20:28:04 +02:00
Ricardo Wurmus
9340b270f7
gnu: r-tilingarray: Update to 1.78.0. 
* gnu/packages/bioconductor.scm (r-tilingarray): Update to 1.78.0.
 2023-04-29 20:28:04 +02:00
Ricardo Wurmus
d04f67f677
gnu: r-wavcluster: Update to 2.34.0. 
* gnu/packages/bioconductor.scm (r-wavcluster): Update to 2.34.0.
 2023-04-29 20:28:04 +02:00
Ricardo Wurmus
77d55ff8e6
gnu: r-reqon: Update to 1.46.0. 
* gnu/packages/bioconductor.scm (r-reqon): Update to 1.46.0.
 2023-04-29 20:28:04 +02:00
Ricardo Wurmus
5d99ad4da4
gnu: r-seqbias: Update to 1.48.0. 
* gnu/packages/bioconductor.scm (r-seqbias): Update to 1.48.0.
 2023-04-29 20:28:04 +02:00
Ricardo Wurmus
3dd7d3bf9e
gnu: r-bigmelon: Update to 1.26.0. 
* gnu/packages/bioconductor.scm (r-bigmelon): Update to 1.26.0.
 2023-04-29 20:28:04 +02:00
Ricardo Wurmus
2d821f86cb
gnu: r-gdsfmt: Update to 1.36.0. 
* gnu/packages/bioconductor.scm (r-gdsfmt): Update to 1.36.0.
 2023-04-29 20:28:04 +02:00
Ricardo Wurmus
217c1275ac
gnu: r-watermelon: Update to 2.6.0. 
* gnu/packages/bioconductor.scm (r-watermelon): Update to 2.6.0.
 2023-04-29 20:28:04 +02:00
Ricardo Wurmus
69ed0c145f
gnu: r-roc: Update to 1.76.0. 
* gnu/packages/bioconductor.scm (r-roc): Update to 1.76.0.
 2023-04-29 20:28:04 +02:00
Ricardo Wurmus
733b8a2e0d
gnu: r-genie3: Update to 1.22.0. 
* gnu/packages/bioconductor.scm (r-genie3): Update to 1.22.0.
 2023-04-29 20:28:03 +02:00
Ricardo Wurmus
a6361a752d
gnu: r-circrnaprofiler: Update to 1.14.0. 
* gnu/packages/bioconductor.scm (r-circrnaprofiler): Update to 1.14.0.
 2023-04-29 20:28:03 +02:00
Ricardo Wurmus
52fd33e996
gnu: r-cicero: Update to 1.18.0. 
* gnu/packages/bioconductor.scm (r-cicero): Update to 1.18.0.
 2023-04-29 20:28:03 +02:00
Ricardo Wurmus
3481a56a13
gnu: r-chicago: Update to 1.28.0. 
* gnu/packages/bioconductor.scm (r-chicago): Update to 1.28.0.
 2023-04-29 20:28:03 +02:00
Ricardo Wurmus
44aeef066d
gnu: r-rcistarget: Update to 1.20.0. 
* gnu/packages/bioconductor.scm (r-rcistarget): Update to 1.20.0.
 2023-04-29 20:28:03 +02:00
Ricardo Wurmus
c5aba0be7c
gnu: r-depecher: Update to 1.16.0. 
* gnu/packages/bioconductor.scm (r-depecher): Update to 1.16.0.
 2023-04-29 20:28:03 +02:00
Ricardo Wurmus
043d2dd022
gnu: r-mixomics: Update to 6.24.0. 
* gnu/packages/bioconductor.scm (r-mixomics): Update to 6.24.0.
 2023-04-29 20:28:03 +02:00
Ricardo Wurmus
afb011a051
gnu: r-flowsom: Update to 2.8.0. 
* gnu/packages/bioconductor.scm (r-flowsom): Update to 2.8.0.
[propagated-inputs]: Remove r-cytoml, r-flowworkspace, r-ggpointdensity, r-ggrepel,
r-pheatmap, r-rcolorbrewer, and r-scattermore.
 2023-04-29 20:28:03 +02:00
Ricardo Wurmus
974dba4509
gnu: r-cytoml: Update to 2.12.0. 
* gnu/packages/bioconductor.scm (r-cytoml): Update to 2.12.0.
[inputs]: Remove zlib.
[propagated-inputs]: Remove r-base64enc, r-corpcor, r-lattice, r-plyr, r-rcpp,
r-rcpparmadillo, r-rcppparallel, r-runit, and r-xml2; add r-cpp11.
 2023-04-29 20:28:03 +02:00
Ricardo Wurmus
43b33d7992
gnu: r-opencyto: Update to 2.12.0. 
* gnu/packages/bioconductor.scm (r-opencyto): Update to 2.12.0.
 2023-04-29 20:28:03 +02:00
Ricardo Wurmus
fadfa9cc60
gnu: r-flowstats: Update to 4.12.0. 
* gnu/packages/bioconductor.scm (r-flowstats): Update to 4.12.0.
 2023-04-29 20:28:03 +02:00
Ricardo Wurmus
c31ae38d58
gnu: r-flowworkspace: Update to 4.12.0. 
* gnu/packages/bioconductor.scm (r-flowworkspace): Update to 4.12.0.
 2023-04-29 20:28:03 +02:00
Ricardo Wurmus
2cf5e0cb7a
gnu: r-rprotobuflib: Update to 2.12.0. 
* gnu/packages/bioconductor.scm (r-rprotobuflib): Update to 2.12.0.
 2023-04-29 20:28:03 +02:00
Ricardo Wurmus
9eade45bfb
gnu: r-flowclust: Update to 3.38.0. 
* gnu/packages/bioconductor.scm (r-flowclust): Update to 3.38.0.
 2023-04-29 20:28:03 +02:00
Ricardo Wurmus
ea4adaa7e8
gnu: r-flowviz: Update to 1.64.0. 
* gnu/packages/bioconductor.scm (r-flowviz): Update to 1.64.0.
 2023-04-29 20:28:03 +02:00
Ricardo Wurmus
c83337a943
gnu: r-ggcyto: Update to 1.28.0. 
* gnu/packages/bioconductor.scm (r-ggcyto): Update to 1.28.0.
 2023-04-29 20:28:03 +02:00
Ricardo Wurmus
557cbfd68c
gnu: r-ncdfflow: Update to 2.46.0. 
* gnu/packages/bioconductor.scm (r-ncdfflow): Update to 2.46.0.
[propagated-inputs]: Remove r-rcpp and r-rcpparmadillo; add r-cpp11.
 2023-04-29 20:28:03 +02:00
Ricardo Wurmus
e346747a7b
gnu: r-flowmeans: Update to 1.60.0. 
* gnu/packages/bioconductor.scm (r-flowmeans): Update to 1.60.0.
 2023-04-29 20:28:03 +02:00
Ricardo Wurmus
0b653ec7f9
gnu: r-flowcore: Update to 2.12.0. 
* gnu/packages/bioconductor.scm (r-flowcore): Update to 2.12.0.
 2023-04-29 20:28:03 +02:00
Ricardo Wurmus
643bf1a6c7
gnu: r-cytolib: Update to 2.12.0. 
* gnu/packages/bioconductor.scm (r-cytolib): Update to 2.12.0.
 2023-04-29 20:28:03 +02:00
Ricardo Wurmus
bff572d037
gnu: r-consensusclusterplus: Update to 1.64.0. 
* gnu/packages/bioconductor.scm (r-consensusclusterplus): Update to 1.64.0.
 2023-04-29 20:28:03 +02:00
Ricardo Wurmus
52719d2995
gnu: r-flowai: Update to 1.30.0. 
* gnu/packages/bioconductor.scm (r-flowai): Update to 1.30.0.
 2023-04-29 20:28:03 +02:00
Ricardo Wurmus
f730a027c8
gnu: r-rsubread: Update to 2.14.0. 
* gnu/packages/bioconductor.scm (r-rsubread): Update to 2.14.0.
 2023-04-29 20:28:03 +02:00
Ricardo Wurmus
ec0fc09a26
gnu: r-annotatr: Update to 1.26.0. 
* gnu/packages/bioconductor.scm (r-annotatr): Update to 1.26.0.
 2023-04-29 20:28:03 +02:00
Ricardo Wurmus
96ae714e28
gnu: r-biosigner: Update to 1.28.0. 
* gnu/packages/bioconductor.scm (r-biosigner): Update to 1.28.0.
 2023-04-29 20:28:03 +02:00
Ricardo Wurmus
bd322e08de
gnu: r-ropls: Update to 1.32.0. 
* gnu/packages/bioconductor.scm (r-ropls): Update to 1.32.0.
 2023-04-29 20:28:03 +02:00
Ricardo Wurmus
74591bcb64
gnu: r-multidataset: Update to 1.28.0. 
* gnu/packages/bioconductor.scm (r-multidataset): Update to 1.28.0.
 2023-04-29 20:28:03 +02:00
Ricardo Wurmus
addd78c953
gnu: r-birewire: Update to 3.32.0. 
* gnu/packages/bioconductor.scm (r-birewire): Update to 3.32.0.
 2023-04-29 20:28:03 +02:00
Ricardo Wurmus
29649ada9e
gnu: r-rqc: Update to 1.34.0. 
* gnu/packages/bioconductor.scm (r-rqc): Update to 1.34.0.
 2023-04-29 20:28:03 +02:00
Ricardo Wurmus
8d3676e217
gnu: r-quasr: Update to 1.40.0. 
* gnu/packages/bioconductor.scm (r-quasr): Update to 1.40.0.
 2023-04-29 20:28:03 +02:00
Ricardo Wurmus
b8c4548ac0
gnu: r-rhisat2: Update to 1.16.0. 
* gnu/packages/bioconductor.scm (r-rhisat2): Update to 1.16.0.
 2023-04-29 20:28:02 +02:00
Ricardo Wurmus
3a2a833691
gnu: r-sgseq: Update to 1.34.0. 
* gnu/packages/bioconductor.scm (r-sgseq): Update to 1.34.0.
 2023-04-29 20:28:02 +02:00
Ricardo Wurmus
e438a5c9d9
gnu: r-rbowtie: Update to 1.40.0. 
* gnu/packages/bioconductor.scm (r-rbowtie): Update to 1.40.0.
 2023-04-29 20:28:02 +02:00
Ricardo Wurmus
c91f3192bc
gnu: r-iclusterplus: Update to 1.36.0. 
* gnu/packages/bioconductor.scm (r-iclusterplus): Update to 1.36.0.
 2023-04-29 20:28:02 +02:00
Ricardo Wurmus
277f476f60
gnu: r-biocfilecache: Update to 2.8.0. 
* gnu/packages/bioconductor.scm (r-biocfilecache): Update to 2.8.0.
[propagated-inputs]: Remove r-rappdirs.
 2023-04-29 20:28:02 +02:00
Ricardo Wurmus
2ee15aee56
gnu: r-arrmnormalization: Update to 1.40.0. 
* gnu/packages/bioconductor.scm (r-arrmnormalization): Update to 1.40.0.
 2023-04-29 20:28:02 +02:00
Ricardo Wurmus
8f88c0243c
gnu: r-progeny: Update to 1.22.0. 
* gnu/packages/bioconductor.scm (r-progeny): Update to 1.22.0.
 2023-04-29 20:28:02 +02:00
Ricardo Wurmus
0bffa9d7e7
gnu: r-rbowtie2: Update to 2.6.0. 
* gnu/packages/bioconductor.scm (r-rbowtie2): Update to 2.6.0.
 2023-04-29 20:28:02 +02:00
Ricardo Wurmus
5c7824bffa
gnu: r-zfpkm: Update to 1.22.0. 
* gnu/packages/bioconductor.scm (r-zfpkm): Update to 1.22.0.
 2023-04-29 20:28:02 +02:00
Ricardo Wurmus
8f89dba276
gnu: r-zinbwave: Update to 1.22.0. 
* gnu/packages/bioconductor.scm (r-zinbwave): Update to 1.22.0.
 2023-04-29 20:28:02 +02:00
Ricardo Wurmus
f8add36afb
gnu: r-webbioc: Update to 1.72.0. 
* gnu/packages/bioconductor.scm (r-webbioc): Update to 1.72.0.
 2023-04-29 20:28:02 +02:00
Ricardo Wurmus
58a016c5b2
gnu: r-widgettools: Update to 1.78.0. 
* gnu/packages/bioconductor.scm (r-widgettools): Update to 1.78.0.
 2023-04-29 20:28:02 +02:00
Ricardo Wurmus
f86f2584f9
gnu: r-wiggleplotr: Update to 1.24.0. 
* gnu/packages/bioconductor.scm (r-wiggleplotr): Update to 1.24.0.
 2023-04-29 20:28:02 +02:00
Ricardo Wurmus
a8a248b0c8
gnu: r-wrench: Update to 1.18.0. 
* gnu/packages/bioconductor.scm (r-wrench): Update to 1.18.0.
 2023-04-29 20:28:02 +02:00
Ricardo Wurmus
1ad2255a5b
gnu: r-wppi: Update to 1.8.0. 
* gnu/packages/bioconductor.scm (r-wppi): Update to 1.8.0.
 2023-04-29 20:28:02 +02:00
Ricardo Wurmus
dd19f928e7
gnu: r-xcms: Update to 3.22.0. 
* gnu/packages/bioconductor.scm (r-xcms): Update to 3.22.0.
[propagated-inputs]: Add r-multtest.
 2023-04-29 20:28:02 +02:00
Ricardo Wurmus
48ad54e1c0
gnu: r-massspecwavelet: Update to 1.66.0. 
* gnu/packages/bioconductor.scm (r-massspecwavelet): Update to 1.66.0.
 2023-04-29 20:28:02 +02:00
Ricardo Wurmus
88acb3def5
gnu: r-roar: Update to 1.36.0. 
* gnu/packages/bioconductor.scm (r-roar): Update to 1.36.0.
 2023-04-29 20:28:02 +02:00
Ricardo Wurmus
4c26b3049a
gnu: r-yarn: Update to 1.26.0. 
* gnu/packages/bioconductor.scm (r-yarn): Update to 1.26.0.
 2023-04-29 20:28:02 +02:00
Ricardo Wurmus
041dbd604b
gnu: r-quantro: Update to 1.34.0. 
* gnu/packages/bioconductor.scm (r-quantro): Update to 1.34.0.
 2023-04-29 20:28:02 +02:00
Ricardo Wurmus
48e5c920d2
gnu: r-gcrma: Update to 2.72.0. 
* gnu/packages/bioconductor.scm (r-gcrma): Update to 2.72.0.
 2023-04-29 20:28:02 +02:00
Ricardo Wurmus
a88af8976b
gnu: r-yapsa: Update to 1.25.0. 
* gnu/packages/bioconductor.scm (r-yapsa): Update to 1.25.0.
 2023-04-29 20:28:02 +02:00
Ricardo Wurmus
ef2b8e94bf
gnu: r-somaticsignatures: Update to 2.36.0. 
* gnu/packages/bioconductor.scm (r-somaticsignatures): Update to 2.36.0.
 2023-04-29 20:28:02 +02:00
Ricardo Wurmus
46158e258b
gnu: r-gtrellis: Update to 1.32.0. 
* gnu/packages/bioconductor.scm (r-gtrellis): Update to 1.32.0.
 2023-04-29 20:28:02 +02:00
Ricardo Wurmus
7cbc47eadd
gnu: r-yamss: Update to 1.26.0. 
* gnu/packages/bioconductor.scm (r-yamss): Update to 1.26.0.
 2023-04-29 20:28:02 +02:00
Ricardo Wurmus
6f5209f1a9
gnu: r-ebimage: Update to 4.42.0. 
* gnu/packages/bioconductor.scm (r-ebimage): Update to 4.42.0.
 2023-04-29 20:28:02 +02:00
Ricardo Wurmus
ba31e05d75
gnu: r-aucell: Update to 1.22.0. 
* gnu/packages/bioconductor.scm (r-aucell): Update to 1.22.0.
 2023-04-29 20:28:02 +02:00
Ricardo Wurmus
bade0db654
gnu: r-allelicimbalance: Update to 1.38.0. 
* gnu/packages/bioconductor.scm (r-allelicimbalance): Update to 1.38.0.
 2023-04-29 20:28:02 +02:00
Ricardo Wurmus
ecc70c623f
gnu: r-annotationtools: Update to 1.74.0. 
* gnu/packages/bioconductor.scm (r-annotationtools): Update to 1.74.0.
 2023-04-29 20:28:02 +02:00
Ricardo Wurmus
c901ed6127
gnu: r-gofuncr: Update to 1.20.0. 
* gnu/packages/bioconductor.scm (r-gofuncr): Update to 1.20.0.
 2023-04-29 20:28:01 +02:00
Ricardo Wurmus
88362fc7ff
gnu: r-atacseqqc: Update to 1.24.0. 
* gnu/packages/bioconductor.scm (r-atacseqqc): Update to 1.24.0.
 2023-04-29 20:28:01 +02:00
Ricardo Wurmus
98e54bf5ca
gnu: r-genomicscores: Update to 2.12.0. 
* gnu/packages/bioconductor.scm (r-genomicscores): Update to 2.12.0.
 2023-04-29 20:28:01 +02:00
Ricardo Wurmus
46b87ee7e7
gnu: r-bionetstat: Update to 1.20.0. 
* gnu/packages/bioconductor.scm (r-bionetstat): Update to 1.20.0.
[source]: Delete minified JavaScript file.
[arguments]: Add 'process-javascript phase.
[native-inputs]: Add esbuild and r-rmarkdown.
 2023-04-29 20:28:01 +02:00
Ricardo Wurmus
1d91760996
gnu: r-motifstack: Update to 1.44.0. 
* gnu/packages/bioconductor.scm (r-motifstack): Update to 1.44.0.
[source]: Delete minified JavaScript file.
[arguments]: Add 'process-javascript phase.
[native-inputs]: Add esbuild and sources for d3.v4.js.
 2023-04-29 20:28:01 +02:00
Ricardo Wurmus
dfd9bb7b1a
gnu: r-motifbreakr: Update to 2.13.7. 
* gnu/packages/bioconductor.scm (r-motifbreakr): Update to 2.13.7.
 2023-04-29 20:28:01 +02:00
Ricardo Wurmus
cee1f0ae56
gnu: r-motifdb: Update to 1.42.0. 
* gnu/packages/bioconductor.scm (r-motifdb): Update to 1.42.0.
[native-inputs]: Add r-formatr, r-markdown, and r-rmarkdown.
 2023-04-29 20:28:01 +02:00
Ricardo Wurmus
4d36726a8c
gnu: r-rgadem: Update to 2.48.0. 
* gnu/packages/bioconductor.scm (r-rgadem): Update to 2.48.0.
 2023-04-29 20:28:01 +02:00
Ricardo Wurmus
d4f475a68b
gnu: r-bacon: Update to 1.28.0. 
* gnu/packages/bioconductor.scm (r-bacon): Update to 1.28.0.
 2023-04-29 20:28:01 +02:00
Ricardo Wurmus
17f1c0e530
gnu: r-abseqr: Update to 1.18.0. 
* gnu/packages/bioconductor.scm (r-abseqr): Update to 1.18.0.
 2023-04-29 20:28:01 +02:00
Ricardo Wurmus
6fbb674db9
gnu: r-a4: Update to 1.48.0. 
* gnu/packages/bioconductor.scm (r-a4): Update to 1.48.0.
 2023-04-29 20:28:01 +02:00
Ricardo Wurmus
f9f9c3f64e
gnu: r-a4base: Update to 1.48.0. 
* gnu/packages/bioconductor.scm (r-a4base): Update to 1.48.0.
 2023-04-29 20:28:01 +02:00
Ricardo Wurmus
775bb851d1
gnu: r-a4reporting: Update to 1.48.0. 
* gnu/packages/bioconductor.scm (r-a4reporting): Update to 1.48.0.
 2023-04-29 20:28:01 +02:00
Ricardo Wurmus
71118c1b26
gnu: r-a4preproc: Update to 1.48.0. 
* gnu/packages/bioconductor.scm (r-a4preproc): Update to 1.48.0.
 2023-04-29 20:28:01 +02:00
Ricardo Wurmus
d2e98617e8
gnu: r-a4classif: Update to 1.48.0. 
* gnu/packages/bioconductor.scm (r-a4classif): Update to 1.48.0.
 2023-04-29 20:28:01 +02:00
Ricardo Wurmus
d596e1db96
gnu: r-a4core: Update to 1.48.0. 
* gnu/packages/bioconductor.scm (r-a4core): Update to 1.48.0.
 2023-04-29 20:28:01 +02:00
Ricardo Wurmus
ae28601ad1
gnu: r-annaffy: Update to 1.72.0. 
* gnu/packages/bioconductor.scm (r-annaffy): Update to 1.72.0.
 2023-04-29 20:28:01 +02:00
Ricardo Wurmus
34b3010a74
gnu: r-mlinterfaces: Update to 1.80.0. 
* gnu/packages/bioconductor.scm (r-mlinterfaces): Update to 1.80.0.
[native-inputs]: Add r-knitr.
 2023-04-29 20:28:01 +02:00
Ricardo Wurmus
46dd98333f
gnu: r-clusterexperiment: Update to 2.20.0. 
* gnu/packages/bioconductor.scm (r-clusterexperiment): Update to 2.20.0.
 2023-04-29 20:28:01 +02:00
Ricardo Wurmus
e2484544a5
gnu: r-clusterprofiler: Update to 4.8.0. 
* gnu/packages/bioconductor.scm (r-clusterprofiler): Update to 4.8.0.
 2023-04-29 20:28:01 +02:00
Ricardo Wurmus
e878a97766
gnu: r-enrichplot: Update to 1.20.0. 
* gnu/packages/bioconductor.scm (r-enrichplot): Update to 1.20.0.
 2023-04-29 20:28:01 +02:00
Ricardo Wurmus
96575cde15
gnu: r-dose: Update to 3.26.0. 
* gnu/packages/bioconductor.scm (r-dose): Update to 3.26.0.
 2023-04-29 20:28:01 +02:00
Ricardo Wurmus
d85403b837
gnu: r-fgsea: Update to 1.26.0. 
* gnu/packages/bioconductor.scm (r-fgsea): Update to 1.26.0.
[propagated-inputs]: Add r-scales.
 2023-04-29 20:28:01 +02:00
Ricardo Wurmus
490e8a9004
gnu: r-fcscan: Update to 1.14.0. 
* gnu/packages/bioconductor.scm (r-fcscan): Update to 1.14.0.
 2023-04-29 20:28:01 +02:00
Ricardo Wurmus
2cbb845e7d
gnu: r-anota: Update to 1.48.0. 
* gnu/packages/bioconductor.scm (r-anota): Update to 1.48.0.
 2023-04-29 20:28:01 +02:00
Ricardo Wurmus
288da213c8
gnu: r-gosemsim: Update to 2.26.0. 
* gnu/packages/bioconductor.scm (r-gosemsim): Update to 2.26.0.
 2023-04-29 20:28:01 +02:00
Ricardo Wurmus
f40f9d0bb9
gnu: r-heatplus: Update to 3.8.0. 
* gnu/packages/bioconductor.scm (r-heatplus): Update to 3.8.0.
 2023-04-29 20:28:01 +02:00
Ricardo Wurmus
2a6a1b55a1
gnu: r-varianttools: Update to 1.42.0. 
* gnu/packages/bioconductor.scm (r-varianttools): Update to 1.42.0.
 2023-04-29 20:28:01 +02:00
Ricardo Wurmus
419e701243
gnu: r-tradeseq: Update to 1.14.0. 
* gnu/packages/bioconductor.scm (r-tradeseq): Update to 1.14.0.
 2023-04-29 20:28:01 +02:00
Ricardo Wurmus
7f77509696
gnu: r-ioniser: Update to 2.24.0. 
* gnu/packages/bioconductor.scm (r-ioniser): Update to 2.24.0.
 2023-04-29 20:28:00 +02:00
Ricardo Wurmus
0ecfa451a0
gnu: r-linnorm: Update to 2.24.0. 
* gnu/packages/bioconductor.scm (r-linnorm): Update to 2.24.0.
 2023-04-29 20:28:00 +02:00
Ricardo Wurmus
3ae9922530
gnu: r-lumi: Update to 2.52.0. 
* gnu/packages/bioconductor.scm (r-lumi): Update to 2.52.0.
 2023-04-29 20:28:00 +02:00
Ricardo Wurmus
ccc6ebc63f
gnu: r-methylumi: Update to 2.46.0. 
* gnu/packages/bioconductor.scm (r-methylumi): Update to 2.46.0.
 2023-04-29 20:28:00 +02:00
Ricardo Wurmus
596dec968e
gnu: r-minfi: Update to 1.46.0. 
* gnu/packages/bioconductor.scm (r-minfi): Update to 1.46.0.
 2023-04-29 20:28:00 +02:00
Ricardo Wurmus
44602f4a65
gnu: r-milor: Update to 1.8.1. 
* gnu/packages/bioconductor.scm (r-milor): Update to 1.8.1.
 2023-04-29 20:28:00 +02:00
Ricardo Wurmus
91758952d4
gnu: r-microbiome: Update to 1.22.0. 
* gnu/packages/bioconductor.scm (r-microbiome): Update to 1.22.0.
 2023-04-29 20:28:00 +02:00
Ricardo Wurmus
957cc37181
gnu: r-mia: Update to 1.8.0. 
* gnu/packages/bioconductor.scm (r-mia): Update to 1.8.0.
 2023-04-29 20:28:00 +02:00
Ricardo Wurmus
8d0843d3eb
gnu: r-bumphunter: Update to 1.42.0. 
* gnu/packages/bioconductor.scm (r-bumphunter): Update to 1.42.0.
 2023-04-29 20:28:00 +02:00
Ricardo Wurmus
73b17e2b61
gnu: r-siggenes: Update to 1.74.0. 
* gnu/packages/bioconductor.scm (r-siggenes): Update to 1.74.0.
 2023-04-29 20:28:00 +02:00
Ricardo Wurmus
ea03105d25
gnu: r-illuminaio: Update to 0.42.0. 
* gnu/packages/bioconductor.scm (r-illuminaio): Update to 0.42.0.
 2023-04-29 20:28:00 +02:00
Ricardo Wurmus
98da84a5a6
gnu: r-geoquery: Update to 2.68.0. 
* gnu/packages/bioconductor.scm (r-geoquery): Update to 2.68.0.
 2023-04-29 20:28:00 +02:00
Ricardo Wurmus
0410b30ba1
gnu: r-scone: Update to 1.24.0. 
* gnu/packages/bioconductor.scm (r-scone): Update to 1.24.0.
 2023-04-29 20:28:00 +02:00
Ricardo Wurmus
74aa56e71f
gnu: r-scdd: Update to 1.24.0. 
* gnu/packages/bioconductor.scm (r-scdd): Update to 1.24.0.
 2023-04-29 20:28:00 +02:00
Ricardo Wurmus
2e1495c9f5
gnu: r-noiseq: Update to 2.44.0. 
* gnu/packages/bioconductor.scm (r-noiseq): Update to 2.44.0.
 2023-04-29 20:28:00 +02:00
Ricardo Wurmus
196e329b69
gnu: r-monocle: Update to 2.28.0. 
* gnu/packages/bioconductor.scm (r-monocle): Update to 2.28.0.
 2023-04-29 20:28:00 +02:00
Ricardo Wurmus
6a313f06bf
gnu: r-mast: Update to 1.26.0. 
* gnu/packages/bioconductor.scm (r-mast): Update to 1.26.0.
[propagated-inputs]: Add r-matrix.
 2023-04-29 20:28:00 +02:00
Ricardo Wurmus
cffec95040
gnu: r-batchelor: Update to 1.16.0. 
* gnu/packages/bioconductor.scm (r-batchelor): Update to 1.16.0.
 2023-04-29 20:28:00 +02:00
Ricardo Wurmus
1f44f80239
gnu: r-residualmatrix: Update to 1.10.0. 
* gnu/packages/bioconductor.scm (r-residualmatrix): Update to 1.10.0.
 2023-04-29 20:28:00 +02:00
Ricardo Wurmus
c8315e500c
gnu: r-icobra: Update to 1.28.0. 
* gnu/packages/bioconductor.scm (r-icobra): Update to 1.28.0.
 2023-04-29 20:28:00 +02:00
Ricardo Wurmus
6c7f4296b9
gnu: r-ihw: Update to 1.28.0. 
* gnu/packages/bioconductor.scm (r-ihw): Update to 1.28.0.
 2023-04-29 20:28:00 +02:00
Ricardo Wurmus
cb5b5722bd
gnu: r-lpsymphony: Update to 1.28.0. 
* gnu/packages/bioconductor.scm (r-lpsymphony): Update to 1.28.0.
 2023-04-29 20:28:00 +02:00
Ricardo Wurmus
ad80b3fa5e
gnu: r-karyoploter: Update to 1.26.0. 
* gnu/packages/bioconductor.scm (r-karyoploter): Update to 1.26.0.
 2023-04-29 20:28:00 +02:00
Ricardo Wurmus
ff78701399
gnu: r-ebseq: Update to 1.40.0. 
* gnu/packages/bioconductor.scm (r-ebseq): Update to 1.40.0.
 2023-04-29 20:28:00 +02:00
Ricardo Wurmus
b861c08de6
gnu: r-dnacopy: Update to 1.74.0. 
* gnu/packages/bioconductor.scm (r-dnacopy): Update to 1.74.0.
 2023-04-29 20:28:00 +02:00
Ricardo Wurmus
559ed048b6
gnu: r-chipexoqual: Update to 1.24.0. 
* gnu/packages/bioconductor.scm (r-chipexoqual): Update to 1.24.0.
 2023-04-29 20:28:00 +02:00
Ricardo Wurmus
1f83062449
gnu: r-savr: Update to 1.37.0. 
* gnu/packages/bioconductor.scm (r-savr): Update to 1.37.0.
 2023-04-29 20:28:00 +02:00
Ricardo Wurmus
3531182e1e
gnu: r-destiny: Update to 3.14.0. 
* gnu/packages/bioconductor.scm (r-destiny): Update to 3.14.0.
[native-inputs]: Remove r-nbconvertr.
 2023-04-29 20:28:00 +02:00
Ricardo Wurmus
6fd03125bf
gnu: r-biocsingular: Update to 1.16.0. 
* gnu/packages/bioconductor.scm (r-biocsingular): Update to 1.16.0.
 2023-04-29 20:28:00 +02:00
Ricardo Wurmus
959fae1d39
gnu: r-metapod: Update to 1.8.0. 
* gnu/packages/bioconductor.scm (r-metapod): Update to 1.8.0.
 2023-04-29 20:27:59 +02:00
Ricardo Wurmus
9886b96ef8
gnu: r-ggtree: Update to 3.8.0. 
* gnu/packages/bioconductor.scm (r-ggtree): Update to 3.8.0.
 2023-04-29 20:27:59 +02:00
Ricardo Wurmus
ea5a5623b1
gnu: r-treesummarizedexperiment: Update to 2.8.0. 
* gnu/packages/bioconductor.scm (r-treesummarizedexperiment): Update to 2.8.0.
 2023-04-29 20:27:59 +02:00