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67186 Commits

Author SHA1 Message Date
Raghav Gururajan
cfa564bcef
gnu: Add python-testfixtures. 
* gnu/packages/python-check.scm (python-testfixtures): New variable.

Signed-off-by: Efraim Flashner <efraim@flashner.co.il>
 2021-03-11 20:48:01 +02:00
Raghav Gururajan
ce2637c003
gnu: Add python-betamax-serializers. 
* gnu/packages/python-web.scm (python-betamax-serializers): New variable.

Signed-off-by: Efraim Flashner <efraim@flashner.co.il>
 2021-03-11 20:47:55 +02:00
Tobias Geerinckx-Rice
c47f0dea8c
gnu: jasper: Update to 2.0.26. 
* gnu/packages/image.scm (jasper): Update to 2.0.26.
 2021-03-11 18:06:56 +01:00
Tobias Geerinckx-Rice
2e2a3b248b
gnu: thermald: Update to 2.4.3. 
* gnu/packages/admin.scm (thermald): Update to 2.4.3.
 2021-03-11 18:06:56 +01:00
Tobias Geerinckx-Rice
b8f0d11f76
gnu: doctest: Update to 2.4.5. 
* gnu/packages/check.scm (doctest): Update to 2.4.5.
 2021-03-11 18:06:56 +01:00
Tobias Geerinckx-Rice
affeb3def7
gnu: jetring: Update to 0.30. 
* gnu/packages/gnupg.scm (jetring): Update to 0.30.
 2021-03-11 18:06:56 +01:00
Tobias Geerinckx-Rice
444a38b991
gnu: memkind: Remove duplicate COPYING file. 
* gnu/packages/disk.scm (memkind)[arguments]: Add the standard
"--docdir=" location to #:configure-flags.
 2021-03-11 18:06:56 +01:00
Tobias Geerinckx-Rice
36c716e1c5
gnu: memkind: Update to 1.11.0. 
* gnu/packages/disk.scm (memkind): Update to 1.11.0.
 2021-03-11 18:06:55 +01:00
raid5atemyhomework via Guix-patches via
495a68e8e5
gnu: Update zfs to 2.0.4. 
Mostly FreeBSD fixes, some documentation changes and corrections, and a few small bugfixes.

Tested with `guix build` only, no in-depth testing done.

From 6037ac6f797f37abb579278a0d30cd16e6876ec6 Mon Sep 17 00:00:00 2001
From: raid5atemyhomework <raid5atemyhomework@protonmail.com>
Date: Thu, 11 Mar 2021 12:43:58 +0000
Subject: [PATCH] gnu: Update zfs to 2.0.4.

* gnu/packages/file-systems.scm (zfs): Update to 2.0.4, rename to
OpenZFS.

Signed-off-by: Tobias Geerinckx-Rice <me@tobias.gr>
 2021-03-11 18:06:55 +01:00
Tobias Geerinckx-Rice
828b4a9156
gnu: fio: Update to 3.26. 
* gnu/packages/benchmark.scm (fio): Update to 3.26.
 2021-03-11 18:06:55 +01:00
Ricardo Wurmus
f0971dfd61
gnu: Add java-openjfx-controls. 
* gnu/packages/java.scm (java-openjfx-controls): New variable.
 2021-03-11 17:30:31 +01:00
Nicolas Goaziou
54d4b7f3ab
gnu: emacs-counsel: Update to 0.13.4. 
* gnu/packages/emacs-xyz.scm (emacs-counsel): Update to 0.13.4.
[source]: Update URI.
 2021-03-11 17:04:48 +01:00
Nicolas Goaziou
db5eb8c38f
gnu: emacs-swiper: Update to 0.13.4. 
* gnu/packages/emacs-xyz.scm (emacs-swiper): Update to 0.13.4.
[source]: Update URI.
 2021-03-11 17:03:02 +01:00
Nicolas Goaziou
49a8f88fe1
gnu: emacs-ivy: Update to 0.13.4. 
* gnu/packages/emacs-xyz.scm (emacs-ivy): Update to 0.13.4.
 2021-03-11 17:02:05 +01:00
Nicolas Goaziou
752843d923
gnu: emacs-project: Fix build. 
* gnu/packages/emacs-xyz.scm (emacs-project)[source]: Fix URI.
 2021-03-11 16:46:11 +01:00
Nicolas Goaziou
e55d35899f
gnu: emacs-map: Update to 3.0. 
* gnu/packages/emacs-xyz.scm (emacs-map): Update to 3.0.
 2021-03-11 16:45:39 +01:00
Nicolas Goaziou
8960f23de8
gnu: emacs-project: Update to 0.5.4. 
* gnu/packages/emacs-xyz.scm (emacs-project): Update to 0.5.4.
 2021-03-11 16:44:09 +01:00
Nicolas Goaziou
b814228c8b
gnu: emacs-posframe: Update to 0.8.8. 
* gnu/packages/emacs-xyz.scm (emacs-posframe): Update to 0.8.8.
 2021-03-11 16:42:52 +01:00
Efraim Flashner
5ae7414860
gnu: Add bandage. 
* gnu/packages/bioinformatics.scm (bandage): New variable.
 2021-03-11 16:54:38 +02:00
Efraim Flashner
f197964689
gnu: mongodb: Add comment about future package versions. 
* gnu/packages/databases.scm (mongodb): Add comment that the license of
the package changed after the packaged version and that it shouldn't be
updated.
 2021-03-11 15:17:26 +02:00
Efraim Flashner
feff80cec3
Revert "gnu: mongodb: Update to 3.4.24 [security fixes]." 
This reverts commit e5f89570c1.

After this version mongodb switched to the Server Side Public License
(https://www.mongodb.com/licensing/server-side-public-license) which is
not a FOSS license.
 2021-03-11 15:13:55 +02:00
Mark H Weaver
21b3b75515
gnu: glib: Fix CVE-2021-27218 and CVE-2021-27219. 
* gnu/packages/patches/glib-CVE-2021-27218.patch,
gnu/packages/patches/glib-CVE-2021-27219-01.patch,
gnu/packages/patches/glib-CVE-2021-27219-02.patch,
gnu/packages/patches/glib-CVE-2021-27219-03.patch,
gnu/packages/patches/glib-CVE-2021-27219-04.patch,
gnu/packages/patches/glib-CVE-2021-27219-05.patch,
gnu/packages/patches/glib-CVE-2021-27219-06.patch,
gnu/packages/patches/glib-CVE-2021-27219-07.patch,
gnu/packages/patches/glib-CVE-2021-27219-08.patch,
gnu/packages/patches/glib-CVE-2021-27219-09.patch,
gnu/packages/patches/glib-CVE-2021-27219-10.patch,
gnu/packages/patches/glib-CVE-2021-27219-11.patch,
gnu/packages/patches/glib-CVE-2021-27219-12.patch,
gnu/packages/patches/glib-CVE-2021-27219-13.patch,
gnu/packages/patches/glib-CVE-2021-27219-14.patch,
gnu/packages/patches/glib-CVE-2021-27219-15.patch,
gnu/packages/patches/glib-CVE-2021-27219-16.patch,
gnu/packages/patches/glib-CVE-2021-27219-17.patch,
gnu/packages/patches/glib-CVE-2021-27219-18.patch: New files.
* gnu/local.mk (dist_patch_DATA): Add them.
* gnu/packages/glib.scm (glib)[replacement]: New field.
(glib/fixed): New variable.
 2021-03-11 06:21:13 -05:00
Léo Le Bouter
500189b4d2
gnu: go: Update to 1.14.15 [security fixes]. 
This update will cause more than 300 packages to be rebuilt but due to how Go
works we can't graft to fix the issue since we actually need to rebuild
dependents so they include a newer version of the Go standard
library. Considering the CVEs that this fixes are in great part in the Go
standard library we can only proceed and push directly to master.

* gnu/packages/golang.scm (go): Update to 1.14.15.
[arguments]: Remove more cgo-related failing tests.
 2021-03-11 11:02:23 +01:00
Pierre Langlois
fd2751f89f
gnu: emacs-password-store: 2.1.4-1.918992c [security fix]. 
Includes a fix to no longer store clear passwords in a temporary file, see
commit 7aa17d099577730d2d65332896b74d5865b22abf for details.

* gnu/packages/emacs-xyz.scm (emacs-password-store): Update to
2.1.4-1.918992c.
[propagated-inputs]: Remove emacs-f, add emacs-auth-source-pass.
 2021-03-11 09:54:44 +00:00
Léo Le Bouter
4a8b529ce1
gnu: openssl: Update to 1.1.1j [security fixes]. 
* gnu/packages/tls.scm (openssl/fixed): New variable.
(openssl)[replacement]: Graft.
 2021-03-11 05:38:57 +01:00
Léo Le Bouter
ee8e4ba7aa
gnu: openvpn: Update to 2.5.1 [security fixes]. 
Non-exhaustively, fixes CVE-2020-7224.

* gnu/packages/vpn.scm (openvpn): Update to 2.5.1.
 2021-03-11 05:31:54 +01:00
Léo Le Bouter
826428ab5b
gnu: libx11: Update to 1.6.12 [fixes CVE-2020-14363]. 
* gnu/packages/xorg.scm (libx11/fixed): New variable.
(libx11)[replacement]: Graft.
 2021-03-11 05:25:43 +01:00
Léo Le Bouter
9d74b66de7
gnu: docker-cli: Fix source hash. 
This is a follow-up to commit 83cda00bc6.

* gnu/packages/docker.scm (docker-cli): Fix source hash caused by cascading
%docker-version variable changes.
 2021-03-11 04:36:22 +01:00
Léo Le Bouter
46a7f82882
gnu: gnome-autoar: Update to 0.3.0 [fixes CVE-2020-36241]. 
* gnu/packages/gnome.scm (gnome-autoar): Update to 0.3.0.
 2021-03-11 04:00:50 +01:00
Léo Le Bouter
2bcfb944bd
gnu: zstd-1.4.9: Fix i686-linux and arm/aarch64-linux builds. 
It's only a graft added for security so disabling tests on there seems
acceptable.

See: <https://lists.gnu.org/archive/html/guix-devel/2021-03/msg00130.html>.

* gnu/packages/compression.scm (zstd-1.4.9)[arguments]: Substitute keyword
arguments of 'zstd' to disable tests.
 2021-03-11 02:58:28 +01:00
Léo Le Bouter
1acfda2f94
gnu: geary: Fix CVE-2020-24661. 
* gnu/packages/patches/geary-CVE-2020-24661.patch: New patch.
* gnu/local.mk (dist_patch_DATA): Register it.
* gnu/packages/gnome.scm (geary): Apply it.
 2021-03-11 02:32:19 +01:00
Léo Le Bouter
be31314638
gnu: gthumb: Update to 3.10.2 [security fixes]. 
Non-exhaustively, fixes CVE-2019-20326.

* gnu/packages/gnome.scm (gthumb): Update to 3.10.2.
 2021-03-11 02:19:53 +01:00
Léo Le Bouter
e940f6d801
gnu: libcroco: Fix CVE-2020-12825. 
* gnu/packages/patches/libcroco-CVE-2020-12825.patch: New patch.
* gnu/local.mk (dist_patch_DATA): Register it.
* gnu/packages/gnome.scm (libcroco/fixed): New variable. Apply patch.
(libcroco)[replacement]: Graft.
 2021-03-11 02:02:24 +01:00
Léo Le Bouter
a2943e36c7
gnu: evolution: Fix CVE-2020-11879. 
* gnu/packages/patches/evolution-CVE-2020-11879.patch: New patch.
* gnu/local.mk (dist_patch_DATA): Register it.
* gnu/packages/gnome.scm (evolution): Apply it.
 2021-03-11 01:19:40 +01:00
Léo Le Bouter
c35f87bb1a
gnu: evolution-data-server: Fix CVE-2020-14928 and CVE-2020-16117. 
* gnu/packages/patches/evolution-data-server-CVE-2020-14928.patch,
gnu/packages/patches/evolution-data-server-CVE-2020-16117.patch: New patches.
* gnu/local.mk (dist_patch_DATA): Register them.
* gnu/packages/gnome.scm (evolution-data-server): Apply them.
 2021-03-11 01:19:40 +01:00
Tobias Geerinckx-Rice
24f0bb21ab
gnu: qca: Update to 2.3.2. 
* gnu/packages/kde.scm (qca): Update to 2.3.2.
 2021-03-11 00:46:02 +01:00
Tobias Geerinckx-Rice
4c144b27d8
gnu: sooperlooper: Update to 1.7.6. 
* gnu/packages/music.scm (sooperlooper): Update to 1.7.6.
 2021-03-11 00:46:02 +01:00
Tobias Geerinckx-Rice
f4618b13d8
gnu: bindfs: Update to 1.15.1. 
* gnu/packages/file-systems.scm (bindfs): Update to 1.15.1.
 2021-03-11 00:46:02 +01:00
Tobias Geerinckx-Rice
5929668ee8
gnu: weechat: Update to 3.1. 
* gnu/packages/irc.scm (weechat): Update to 3.1.
 2021-03-11 00:46:01 +01:00
Tobias Geerinckx-Rice
6900105334
gnu: os-prober: Update to 1.78. 
* gnu/packages/bootloaders.scm (os-prober): Update to 1.78.
 2021-03-11 00:46:01 +01:00
Tobias Geerinckx-Rice
a3926c8227
gnu: mutt: Update to 2.0.6. 
* gnu/packages/mail.scm (mutt): Update to 2.0.6.
 2021-03-11 00:46:01 +01:00
Léo Le Bouter
6eea92e38b
gnu: librecad: Update to 2.2.0-rc2 [fixes CVE-2018-19105]. 
* gnu/packages/engineering.scm (librecad): Update to 2.2.0-rc2.
 2021-03-10 23:58:02 +01:00
Nicolas Goaziou
a70216c327
gnu: monolith: Update to 2.4.1. 
* gnu/packages/web.scm (monolith): Update to 2.4.1.
 2021-03-10 23:49:59 +01:00
Nicolas Goaziou
b1e4be8fea
gnu: Add rust-cssparser-0.28. 
* gnu/packages/crates-io.scm (rust-cssparser-0.28): New variable.
(rust-cssparser-0.27): Inherit from above.
 2021-03-10 23:49:59 +01:00
Nicolas Goaziou
59e0c9a439
gnu: Add rust-reqwest-0.11. 
* gnu/packages/crates-io.scm (rust-reqwest-0.11): New variable.
(rust-reqwest-0.10): Inherit from above.
 2021-03-10 23:49:58 +01:00
Nicolas Goaziou
0f0451c6cb
gnu: Add rust-tokio-util-0.4. 
* gnu/packages/crates-io.scm (rust-tokio-util-0.4): New variable.
 2021-03-10 23:49:58 +01:00
Nicolas Goaziou
0d171198a2
gnu: rust-async-compression-0.3: Update to 0.3.7. 
* gnu/packages/crates-io.scm (rust-async-compression-0.3): Update to 0.3.7.
[arguments]: Skip tests.
 2021-03-10 23:49:58 +01:00
Nicolas Goaziou
c2e5118452
gnu: Add rust-zstd-0.6. 
* gnu/packages/crates-io.scm (rust-zstd-0.6): New variable.
(rust-zstd-0.5): Inherit from above.
 2021-03-10 23:49:57 +01:00
Nicolas Goaziou
7c0565dcb5
gnu: Add rust-zstd-safe-3. 
* gnu/packages/crates-io.scm (rust-zstd-safe-3): New variable.
(rust-zstd-safe-2): Inherit from above.
 2021-03-10 23:49:57 +01:00
Nicolas Goaziou
1fa3b73618
gnu: rust-zstd-sys-1: Update to 1.4.20+zstd.1.4.9. 
* gnu/packages/crates-io.scm (rust-zstd-sys-1): Update to 1.4.20+zstd.1.4.9.
 2021-03-10 23:49:57 +01:00
Nicolas Goaziou
8a6c39e848
gnu: Add rust-bindgen-0.57. 
* gnu/packages/crates-io.scm (rust-bindgen-0.57): New variable.
(rust-bindgen-0.55): Inherit from above.
 2021-03-10 23:49:56 +01:00
Nicolas Goaziou
95b13ec637
gnu: Add rust-hyper-0.14. 
* gnu/packages/crates-io.scm (rust-hyper-0.14): New variable.
(rust-hyper-0.13): Inherit from above.
 2021-03-10 23:49:56 +01:00
Nicolas Goaziou
b31d9a2fe6
gnu: Add rust-http-body-0.4. 
* gnu/packages/crates-io.scm (rust-http-body-0.4): New variable.
(rust-http-body-0.3): Inherit from above.
 2021-03-10 23:49:56 +01:00
Nicolas Goaziou
0846ddb129
gnu: Add rust-h2-0.3. 
* gnu/packages/crates-io.scm (rust-h2-0.3): New variable.
(rust-h2-0.2): Inherit from above.
 2021-03-10 23:49:55 +01:00
Nicolas Goaziou
50f7108957
gnu: Add rust-tokio-util-0.6. 
* gnu/packages/crates-io.scm (rust-tokio-util-0.6): New variable.
(rust-tokio-util-0.3): Inherit from above.
 2021-03-10 23:49:55 +01:00
Nicolas Goaziou
92075bd48d
gnu: Add rust-httpdate-0.3. 
* gnu/packages/crates-io.scm (rust-httpdate-0.3): New variable.
 2021-03-10 23:49:55 +01:00
Nicolas Goaziou
ec64626f15
gnu: Add rust-hyper-rustls-0.22. 
* gnu/packages/crates-io.scm (rust-hyper-rustls-0.22): New variable.
(rust-hyper-rustls-0.21): Inherit from above.
 2021-03-10 23:49:54 +01:00
Nicolas Goaziou
4f2202bf30
gnu: Add rust-ct-logs-0.8. 
* gnu/packages/crates-io.scm (rust-ct-logs-0.8): New variable.
(rust-ct-logs-0.7): Inherit from above.
 2021-03-10 23:49:54 +01:00
Nicolas Goaziou
d08a4c776f
gnu: Add rust-rustls-native-certs-0.5. 
* gnu/packages/crates-io.scm (rust-rustls-native-certs-0.5): New variable.
(rust-rustls-native-certs-0.4): Inherit from above.
 2021-03-10 23:49:54 +01:00
Nicolas Goaziou
aab798976a
gnu: Add rust-webpki-roots-0.21. 
* gnu/packages/crates-io.scm (rust-webpki-roots-0.21): New variable.
(rust-webpki-roots-0.20): Inherit from above.
 2021-03-10 23:49:53 +01:00
Nicolas Goaziou
d5249b0240
gnu: Add rust-hyper-tls-0.5. 
* gnu/packages/crates-io.scm (rust-hyper-tls-0.5): New variable.
(rust-hyper-tls-0.4): Inherit from above.
 2021-03-10 23:49:53 +01:00
Nicolas Goaziou
7945e1611f
gnu: Add rust-tokio-native-tls-0.3. 
* gnu/packages/crates-io.scm (rust-tokio-native-tls-0.3): New variable.
(rust-tokio-native-tls-0.1): Inherit from above.
 2021-03-10 23:49:53 +01:00
Nicolas Goaziou
f8e2758ec4
gnu: Add rust-tokio-socks-0.5. 
* gnu/packages/crates-io.scm (rust-tokio-socks-0.5): New variable.
(rust-tokio-socks-0.3): Inherit from above.
 2021-03-10 23:49:52 +01:00
Nicolas Goaziou
aa0038b640
gnu: rust-native-tls-0.2: Update to 0.2.7. 
* gnu/packages/crates-io.scm (rust-native-tls-0.2): Update to 0.2.7.
 2021-03-10 23:49:52 +01:00
Nicolas Goaziou
74efdfc4e9
gnu: Add rust-test-cert-gen-0.1. 
* gnu/packages/crates-io.scm (rust-test-cert-gen-0.1): New variable.
 2021-03-10 23:49:52 +01:00
Nicolas Goaziou
0d279640ce
gnu: Add rust-trust-dns-resolver-0.20. 
* gnu/packages/crates-io.scm (rust-trust-dns-resolver-0.20): New variable.
(rust-trust-dns-resolver-0.19): Inherit from above.
 2021-03-10 23:49:51 +01:00
Nicolas Goaziou
785cbb0989
gnu: Add rust-resolv-conf-0.7. 
* gnu/packages/crates-io.scm (rust-resolv-conf-0.7): New variable.
(rust-resolv-conf-0.6): Inherit from above.
 2021-03-10 23:49:51 +01:00
Nicolas Goaziou
3843fc8fc8
gnu: Add rust-tokio-openssl-0.6. 
* gnu/packages/crates-io.scm (rust-tokio-openssl-0.6): New variable.
(rust-tokio-openssl-0.4): Inherit from above.
 2021-03-10 23:49:51 +01:00
Nicolas Goaziou
43212fcaf6
gnu: Add rust-trust-dns-https-0.20. 
* gnu/packages/crates-io.scm (rust-trust-dns-https-0.20): New variable.
(rust-trust-dns-https-0.19): Inherit from above.
 2021-03-10 23:49:50 +01:00
Nicolas Goaziou
46f8eecb51
gnu: Add rust-trust-dns-rustls-0.20. 
* gnu/packages/crates-io.scm (rust-trust-dns-rustls-0.20): New variable.
(rust-trust-dns-rustls-0.19): Inherit from above.
 2021-03-10 23:49:50 +01:00
Nicolas Goaziou
58e89cb0b9
gnu: Add rust-trust-dns-openssl-0.20. 
* gnu/packages/crates-io.scm (rust-trust-dns-openssl-0.20): New variable.
(rust-trust-dns-openssl-0.19): Inherit from above.
 2021-03-10 23:49:50 +01:00
Nicolas Goaziou
ba777a3cc4
gnu: Add rust-trust-dns-native-tls-0.20. 
* gnu/packages/crates-io.scm (rust-trust-dns-native-tls-0.20): New variable.
(rust-trust-dns-native-tls-0.19): Inherit from above.
 2021-03-10 23:49:49 +01:00
Nicolas Goaziou
3e6a0f1985
gnu: Add rust-trust-dns-proto-0.20. 
* gnu/packages/crates-io.scm (rust-trust-dns-proto-0.20): New variable.
(rust-trust-dns-proto-0.19): Inherit from above.
 2021-03-10 23:49:49 +01:00
Nicolas Goaziou
31be44a8aa
gnu: rust-openssl-sys-0.9: Update to 0.9.60. 
* gnu/packages/crates-io.scm (rust-openssl-sys-0.9): Update to 0.9.60.
 2021-03-10 23:49:49 +01:00
Nicolas Goaziou
b950ff3dbf
gnu: rust-backtrace-0.3: Update to 0.3.56. 
* gnu/packages/crates-io.scm (rust-backtrace-0.3): Update to 0.3.56.
 2021-03-10 23:49:48 +01:00
Nicolas Goaziou
fbc807f3b6
gnu: Add rust-addr2line-0.14. 
* gnu/packages/crates-io.scm (rust-addr2line-0.14): New variable.
(rust-addr2line-0.11): Inherit from above.
 2021-03-10 23:49:48 +01:00
Nicolas Goaziou
406fe167e1
gnu: Add rust-cpp-demangle-0.3. 
* gnu/packages/crates-io.scm (rust-cpp-demangle-0.3): New variable.
(rust-cpp-demangle-0.2): Inherit from above.
 2021-03-10 23:49:48 +01:00
Nicolas Goaziou
8e54e5243b
gnu: Add rust-gimli-0.23. 
* gnu/packages/crates-io.scm (rust-gimli-0.23): New variable.
(rust-gimli-0.20): Inherit from above.
 2021-03-10 23:49:47 +01:00
Nicolas Goaziou
8cc3a16cbb
gnu: Add rust-object-0.22. 
* gnu/packages/crates-io.scm (rust-object-0.22): New variable.
 2021-03-10 23:49:47 +01:00
Nicolas Goaziou
b6a627e9c0
gnu: Add rust-object-0.23. 
* gnu/packages/crates-io.scm (rust-object-0.23): New variable.
(rust-object-0.17): Inherit from above.
 2021-03-10 23:49:47 +01:00
Nicolas Goaziou
6cadf34d1f
gnu: Add rust-wasmparser-0.57. 
* gnu/packages/crates-io.scm (rust-wasmparser-0.57): New variable.
 2021-03-10 23:49:46 +01:00
Léo Le Bouter
00c1793ce8
gnu: ungoogled-chromium: Add xdg-utils to PATH with wrapper. 
This will ensure that 'mailto:' links work out of the box, among others.

* gnu/packages/chromium.scm (ungoogled-chromium): Modify replacement 'install
phase to add xdg-utils to PATH with wrap-program.
 2021-03-10 23:38:53 +01:00
Léo Le Bouter
9b52ae19b1
gnu: containerd: Update to 1.3.10 [security fixes]. 
* gnu/packages/docker.scm (containerd): Update to 1.3.10.
 2021-03-10 23:37:52 +01:00
Léo Le Bouter
83cda00bc6
gnu: docker: Update to 19.03.15 [security fixes]. 
* gnu/packages/docker.scm (%docker-version): Bump to 19.03.15.
(docker-libnetwork): Bump to 19.03-1.55e924b.
(docker):
[source]: Set git-reference url to 'https://github.com/moby/moby'.
[arguments]<#:phases>: Modify 'delete-failing-tests phase to delete
'signal_linux_test.go'.
 2021-03-10 23:37:52 +01:00
Ludovic Courtès
b665dd4a99
file-systems: 'mount-file-system' preserves the right mount flags. 
Fixes <https://bugs.gnu.org/47007>.
Reported by Jelle Licht <jlicht@fsfe.org>.

Since commit dcb640f02b, we could end up
applying the wrong mount flags because the (find ...) expression could
pick the "wrong" mount point in the presence of bind mounts.

* gnu/build/file-systems.scm (mount-file-system): Use 'statfs' to
compute FLAGS whe FS is a bind mount.
 2021-03-10 23:21:33 +01:00
Léo Le Bouter
b610e4b9a7
gnu: lib3mf: Update to 2.1.1 [security fixes]. 
Non-exhaustively, fixes CVE-2021-21772.

* gnu/packages/engineering.scm (lib3mf): Update to 2.1.1.
[arguments]<#:phases>: Remove.
[arguments]<#:configure-flags>: Do not use zlib, libzip, gtest and libressl
vendored sources.
[native-inputs]: Remove googletest-source, add googletest and pkg-config.
[inputs]: Add libzip, libressl and zlib.
 2021-03-10 22:22:04 +01:00
Léo Le Bouter
6c5d358cc2
gnu: python-django-2.2: Update to 2.2.19 [security fixes]. 
* gnu/packages/django.scm (python-django-2.2): Update to 2.2.19.
 2021-03-10 21:50:06 +01:00
Léo Le Bouter
1997ded2f4
gnu: python-django: Update to 3.1.7 [security fixes]. 
* gnu/packages/django.scm (python-django): Update to 3.1.7.
 2021-03-10 21:50:05 +01:00
Taylan Kammer
b1eb744837
gnu: guile-bytestructures: Update to 1.0.10. 
* gnu/packages/guile.scm (guile-bytestructures): Update to 1.0.10.

Signed-off-by: Tobias Geerinckx-Rice <me@tobias.gr>
See: <https://logs.guix.gnu.org/guix/2021-03-10.log#205043>
 2021-03-10 21:22:42 +01:00
Mathieu Othacehe
60174c9c8c
gnu: cuirass: Update to 0.0.1-77.88f3cf6. 
* gnu/packages/ci.scm (cuirass): Update to 0.0.1-77.88f3cf6.
 2021-03-10 19:26:24 +01:00
Pierre Neidhardt
6e70211b20
gnu: sbcl-quri: Update to 0.3.0. 
* gnu/packages/lisp-xyz.scm (sbcl-quri): Update to 0.3.0.
 2021-03-10 18:20:05 +01:00
Pierre Neidhardt
336088d521
gnu: Add fof. 
* gnu/packages/lisp-xyz.scm (cl-fof, ecl-fof, sbcl-fof): New variables.
 2021-03-10 18:20:05 +01:00
Pierre Neidhardt
c3e53066bd
gnu: sbcl-hu.dwim.defclass-star: Update to 20210309. 
* gnu/packages/lisp-xyz.scm (sbcl-hu.dwim.defclass-star): Update to 20210309.
 2021-03-10 18:20:05 +01:00
Katherine Cox-Buday
02e2e093e8
import: Add Go importer. 
This patch adds a 'guix import go' command.

* doc/guix.texi (Requirements): Mention Guile-Lib dependency.
(Invoking guix import): Document 'guix import go'.
* gnu/packages/package-management.scm (guix)[inputs, propagated-inputs]:
Add GUILE-LIB.
* guix/self.scm (compiled-guix)[guile-lib]: New variable.
[dependencies]: Add it.
(specification->package): Add "guile-lib".
* guix/build-system/go.scm (go-version->git-ref): New procedure.
* guix/import/go.scm, guix/scripts/import/go.scm, tests/go.scm: New files.
* guix/scripts/import.scm: Declare subcommand guix import go
* po/guix/POTFILES.in: Add 'guix/scripts/import/go.scm'.
* Makefile.am (MODULES): Add 'guix/import/go.scm' and
'guix/scripts/import/go.scm'.
(SCM_TESTS): Add 'tests/go.scm'.

Co-Authored-By: Helio Machado <0x2b3bfa0@gmail.com>
Co-Authored-By: Francois Joulaud <francois.joulaud@radiofrance.com>
Co-Authored-By: Maxim Cournoyer <maxim.cournoyer@gmail.com>
Co-Authored-by: Ludovic Courtès <ludo@gnu.org>
 2021-03-10 18:01:48 +01:00
Maxime Devos
520bac7ed0
services: Prevent following symlinks during activation. 
This addresses a potential security issue, where a compromised
service could trick the activation code in changing the permissions,
owner and group of arbitrary files.  However, this patch is
currently only a partial fix, due to a TOCTTOU (time-of-check to
time-of-use) race, which can be fixed once guile has bindings
to openat and friends.

Fixes: <https://lists.gnu.org/archive/html/guix-devel/2021-01/msg00388.html>

* gnu/build/activation.scm: new procedure 'mkdir-p/perms'.
* gnu/services/authentication.scm
  (%nslcd-activation, nslcd-service-type): use new procedure.
* gnu/services/cups.scm (%cups-activation): likewise.
* gnu/services/dbus.scm (dbus-activation): likewise.
* gnu/services/dns.scm (knot-activation): likewise.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
 2021-03-10 18:01:47 +01:00
Ludovic Courtès
1a1d0fe505
gnu: hwloc: Update to 2.4.1. 
* gnu/packages/mpi.scm (hwloc-2): Update to 2.4.1.  Adjust URL.
 2021-03-10 18:01:47 +01:00
Mathieu Othacehe
c1baf9b824
gnu: cuirass: Update to 0.0.1-76.5f830da. 
* gnu/packages/ci.scm (cuirass): Update to 0.0.1-76.5f830da.
 2021-03-10 16:41:42 +01:00
Nicolas Goaziou
efed8e6cb9
gnu: python-pikepdf: Update to 2.8.0.post2. 
* gnu/packages/python-xyz.scm (python-pikepdf): Update to 2.8.0.post2.
 2021-03-10 16:03:27 +01:00
Mathieu Othacehe
c260aff63e
gnu: cuirass: Update to 0.0.1-75.94a7f87. 
* gnu/packages/ci.scm (cuirass): Update to 0.0.1-75.94a7f87.
 2021-03-10 16:01:36 +01:00
Mathieu Othacehe
6bed29b798
gnu: guix: Update to 1.2.0-15.f8953be. 
* gnu/packages/package-management.scm (guix): Update to 1.2.0-15.f8953be.
 2021-03-10 14:25:05 +01:00
Mathieu Othacehe
f8953bea85
gnu: cuirass: Update to 0.0.1-74.c8051f3. 
* gnu/packages/ci.scm (cuirass): Update to 0.0.1-74.c8051f3.
 2021-03-10 13:59:44 +01:00
Léo Le Bouter
e5f89570c1
gnu: mongodb: Update to 3.4.24 [security fixes]. 
* gnu/packages/patches/mongodb-support-unknown-linux-distributions.patch:
Remove patch.
* gnu/local.mk (dist_patch_DATA): Ditto.
* gnu/packages/databases.scm (mongodb): Update to 3.4.24.
[source]: Drop patch. Update third_party libs folder names.
 2021-03-10 13:03:12 +01:00
Léo Le Bouter
fdf82830d4
gnu: mysql: Update to 5.7.33 [security fixes]. 
* gnu/packages/databases.scm (mysql): Update to 5.7.33.
 2021-03-10 12:22:55 +01:00
Lars-Dominik Braun
999a1cba54
gnu: python-sanic: Update to 20.12.2. 
* gnu/packages/python-web.scm (python-sanic) [version]: Update to 20.12.2.
[arguments]: Relax dependency versions.
[native-inputs]: Add python-pytest-asyncio.
[home-page]: Update.
[synopsis]: Remove Python version.
[description]: Ditto.
 2021-03-10 12:01:50 +01:00
Lars-Dominik Braun
955fcf0a19
gnu: python-pytest-sanic: Update to 1.7.0. 
* gnu/packages/python-check.scm (python-pytest-sanic) [version]: Update to
1.7.0.
[propagated-inputs]: Replace python-aiohttp with python-httpx and add
python-websockets.
 2021-03-10 12:01:49 +01:00
Lars-Dominik Braun
548d0ddd7f
gnu: python-aiofiles: Update to 0.6.0. 
* gnu/packages/python-xyz.scm (python-aiofiles): Update to 0.6.0.
 2021-03-10 12:01:48 +01:00
Lars-Dominik Braun
d58a7b45cd
gnu: python-ujson: Update to 4.0.2. 
* gnu/packages/python-xyz.scm (python-ujson): Update to 4.0.2.
 2021-03-10 12:01:47 +01:00
Lars-Dominik Braun
e7a3ae1e85
gnu: python-tortoise-orm: Update to 0.16.21. 
* gnu/packages/databases.scm (python-tortoise-orm) [version]: Update to 0.16.21.
[arguments]: Relax version requirements.
 2021-03-10 12:01:46 +01:00
Lars-Dominik Braun
281fd9ad71
gnu: python-aiosqlite: Update to 0.17.0. 
* gnu/packages/databases.scm (python-aiosqlite) [version]: Update to 0.17.0.
[arguments]: Run tests.
[propagated-inputs]: Add python-typing-extensions.
 2021-03-10 12:01:45 +01:00
Lars-Dominik Braun
f73ee73da7
gnu: python-pypika: Update to 0.47.6. 
* gnu/packages/databases.scm (python-pypika): Update to 0.47.6.
 2021-03-10 12:01:43 +01:00
Lars-Dominik Braun
b431840cbe
gnu: python-aiounittest: Update to 1.4.0. 
* gnu/packages/check.scm (python-aiounittest) [version]: Update to 1.4.0.
[source]: Switch to git repository.
[arguments]: Run notetests.
[propagated-inputs]: Add python-wrapt.
 2021-03-10 12:01:42 +01:00
Lars-Dominik Braun
38b0c64d7b
gnu: python-shouldbe: Remove. 
Unmaintained upstream and its only dependent (python-gssapi) dropped it.

* gnu/packages/patches/python-shouldbe-0.1.2-cpy3.8.patch: Remove.
* gnu/local.mk: Drop patch file.
* gnu/packages/python-xyz.scm (python-shouldbe): Remove.
 2021-03-10 12:01:41 +01:00
Lars-Dominik Braun
714465ec7c
gnu: python-asyncssh: Update to 2.5.0. 
* gnu/packages/ssh.scm (python-asyncssh): Update to 2.5.0.
 2021-03-10 12:01:40 +01:00
Lars-Dominik Braun
9a05af61ac
gnu: python-gssapi: Update to 1.6.12. 
* gnu/packages/python-xyz.scm (python-gssapi) [version]: Update to 1.6.12.
[arguments]: Tests have been fixed upstream, remove.
[native-inputs]: python-shouldbea is not required any more, remove.
 2021-03-10 12:01:35 +01:00
Léo Le Bouter
70128b8afa
gnu: cyrus-sasl: Fix CVE-2019-19906. 
* gnu/packages/patches/cyrus-sasl-CVE-2019-19906.patch: New patch.
* gnu/local.mk (dist_patch_DATA): Register it.
* gnu/packages/cyrus-sasl.scm (cyrus-sasl/fixed): New variable. Apply patch.
(cyrus-sasl)[replacement]: Graft.
 2021-03-10 11:51:09 +01:00
Raghav Gururajan
fb4ccb86c2
gnu: gajim: Update to 1.3.1. 
* gnu/packages/messaging.scm (gajim): Update to 1.3.1.
[arguments]: Modify custom 'disable-failing-tests phase.
 2021-03-10 12:22:42 +02:00
Simon South
e6cd049e2f
gnu: sdcc: Update to 4.1.0. 
* gnu/packages/embedded.scm (sdcc): Update to 4.1.0.
* gnu/packages/patches/sdcc-disable-non-free-code.patch: Update to match new
version.

Signed-off-by: Efraim Flashner <efraim@flashner.co.il>
 2021-03-10 12:22:42 +02:00
Léo Le Bouter
47ce29666b
gnu: botan: Update to 2.17.3 [fixes CVE-2021-24115]. 
* gnu/packages/crypto.scm (botan): Update to 2.17.3.
[arguments]: Add 'library-path-for-tests phase to fix 'check phase by setting
LD_LIBRARY_PATH to intermediate build directory so tests can find libbotan.
 2021-03-10 11:20:08 +01:00
Léo Le Bouter
f7fdafeff5
gnu: zziplib: Update to 0.13.72 [security fixes]. 
Non-exhaustively, fixes CVE-2018-16548 and CVE-2018-17828.

* gnu/packages/compression.scm (zziplib/fixed): New variable.
(zziplib)[replacement]: Graft.
 2021-03-10 10:59:12 +01:00
Guillaume Le Vaillant
b8e71b390d
gnu: Add unixcw. 
* gnu/packages/radio.scm (unixcw): New variable.
 2021-03-10 10:54:56 +01:00
Guillaume Le Vaillant
e212f32dce
gnu: Add aldo. 
* gnu/packages/radio.scm (aldo): New variable.
 2021-03-10 10:54:56 +01:00
Raghav Gururajan
f4fd7bda51
gnu: python-nbxmpp: Update to 2.0.2. 
* gnu/packages/messaging.scm (python-nbxmpp) [version]: Update to 2.0.2.

Signed-off-by: Efraim Flashner <efraim@flashner.co.il>
 2021-03-10 11:03:46 +02:00
Léo Le Bouter
b66fc0a64b
gnu: bsdiff: Fix CVE-2014-9862. 
* gnu/packages/patches/bsdiff-CVE-2014-9862.patch: New patch.
* gnu/local.mk (dist_patch_DATA): Register it.
* gnu/packages/compression.scm (bsdiff): Apply it.
 2021-03-10 09:54:27 +01:00
Mathieu Othacehe
207ef1a2b4
tests: cuirass: Remove cuirass simple test. 
This is a follow-up of 6c883d0f1d.

* gnu/tests/cuirass.scm (simple-cuirass-service, %cuirass-simple-test): Remove
them.
 2021-03-10 09:37:48 +01:00
Mathieu Othacehe
6c883d0f1d
services: cuirass: Remove simple cuirass configuration. 
The Cuirass configuration has been simplified so that this is no longer
needed.

* gnu/services/cuirass.scm (<build-manifest>, <simple-cuirass-configuration>,
simple-cuirass-configuration->specs): Remove them.
 2021-03-10 09:05:02 +01:00
Mathieu Othacehe
76bea3f8bc
ci: Remove hydra support. 
This removes hydra support to use Cuirass as the only continuous integration
system.

* build-aux/hydra/gnu-system.scm: Remove it.
* build-aux/hydra/guix-modular.scm: Ditto.
* build-aux/hydra/guix.scm: Ditto.
* build-aux/cuirass/hydra-to-cuirass.scm: Ditto.
* Makefile.am (EXTRA_DIST): Update it.
(hydra-jobs.scm): Remove it.
(cuirass-jobs.scm): Update it.
* build-aux/hydra/evaluate.scm: Move it to ...
* build-aux/cuirass/evaluate.scm: ... here.
* build-aux/cuirass/guix-modular.scm: Remove it.
* build-aux/cuirass/gnu-system.scm: Ditto.
* guix/packages.scm (%hydra-supported-systems): Rename it to ...
(%cuirass-supported-systems): ... this variable.
* build-aux/check-final-inputs-self-contained: Adapt it.
* etc/release-manifest.scm: Ditto.
* gnu/ci.scm (package->alist): Remove it.
(derivation->job): New procedure.
(package-job, package-cross-job, cross-jobs, image-jobs, system-test-jobs,
tarball-jobs): Use it.
(guix-jobs): New procedure.
(hydra-jobs): Rename it to ...
(cuirass-jobs): ... this procedure.
 2021-03-10 08:49:48 +01:00
Mathieu Othacehe
0be2474d42
services: cuirass: Do not create the database directory. 
Fixes: <https://issues.guix.gnu.org/46683>.

* gnu/services/cuirass.scm (cuirass-activation): Since the PostgreSQL switch,
it is no longer needed to create the database directory.
 2021-03-10 08:49:48 +01:00
Mathieu Othacehe
ff52d1156c
gnu: cuirass: Update to 0.0.1-73.14e1335. 
* gnu/packages/ci.scm (cuirass): Update to 0.0.1-73.14e1335.
[arguments]: Enable tests and add new 'set-PATH-for-tests phase.
[native-inputs]: Add ephemeralpg.
 2021-03-10 08:49:47 +01:00
Mathieu Othacehe
0d5e2c587f
gnu: guile-simple-zmq: Update to 0.0.0-9.b2ea97e. 
* gnu/packages/guile-xyz.scm (guile-simple-zmq): Update to 0.0.0-9.b2ea97e.
 2021-03-10 08:49:47 +01:00
Léo Le Bouter
80739ea480
gnu: gnucobol: Update to 3.1.2 [security fixes]. 
* gnu/packages/cobol.scm (gnucobol): Update to 3.1.2.
[arguments]: Add 'set-TERM phase before 'check to set the TERM environment
variable for tests that expect it.
 2021-03-10 06:54:58 +01:00
Léo Le Bouter
ca15eaeb06
gnu: osc: Update to 0.172.0 [fixes CVE-2019-3681]. 
* gnu/packages/build-tools.scm (osc): Update to 0.172.0.
[native-inputs]: Add python-chardet. Required by tests.
 2021-03-10 05:01:38 +01:00
Léo Le Bouter
f736dedc4f
gnu: python-m2crypto: Disable tests because they are date-sensitive. 
* gnu/packages/python-crypto.scm (python-m2crypto)[arguments]: Set '#:tests?'
to '#f'.
 2021-03-10 05:01:38 +01:00
Leo Famulari
014ef060ea
gnu: linux-libre 5.4: Update to 5.4.104. 
* gnu/packages/linux.scm (linux-libre-5.4-version): Update to 5.4.104.
(linux-libre-5.4-pristine-source): Update hash.
 2021-03-09 22:10:23 -05:00
Leo Famulari
79aafab07d
gnu: linux-libre 5.10: Update to 5.10.22. 
* gnu/packages/linux.scm (linux-libre-5.10-version): Update to 5.10.22.
(linux-libre-5.10-pristine-source): Update hash.
 2021-03-09 22:10:23 -05:00
Leo Famulari
b38f73f35c
gnu: linux-libre: Update to 5.11.5. 
* gnu/packages/linux.scm (linux-libre-5.11-version): Update to 5.11.5.
(linux-libre-5.11-pristine-source): Update hash.
 2021-03-09 22:10:16 -05:00
Léo Le Bouter
674474f646
gnu: c-ares: Update to 1.17.1 [fixes CVE-2020-8277]. 
* gnu/packages/adns.scm (c-ares/fixed): New variable.
(c-ares)[replacement]: Graft.
 2021-03-10 03:52:04 +01:00
Léo Le Bouter
852ba914a4
gnu: imagemagick/fixed: Retain version length for successful grafting. 
* gnu/packages/imagemagick.scm (imagemagick/fixed):
[version]: Append 'g'.
[source]: Hardcode version.
 2021-03-10 01:36:26 +01:00
Sébastien Lerique
81404a858c
gnu: password-store: Update to 1.7.3-1.918992c. 
* gnu/packages/password-utils.scm (password-store): Update to
1.7.3-1.918992c.
[arguments]<#:phases>['wrap-path]: Add "wl-clipboard".
[inputs]: Add "wl-clipboard".

Signed-off-by: Tobias Geerinckx-Rice <me@tobias.gr>
 2021-03-10 01:16:08 +01:00
Tobias Geerinckx-Rice
5d0f394b85
gnu: dcmtk: Update to 3.6.6. 
* gnu/packages/image-processing.scm (dcmtk): Update to 3.6.6.
[inputs]: Add icu4c.
 2021-03-10 01:16:07 +01:00
Tobias Geerinckx-Rice
4aef8e0af5
gnu: electron-cash: Update to 4.2.4. 
* gnu/packages/finance.scm (electron-cash): Update to 4.2.4.
 2021-03-10 01:16:07 +01:00
Tobias Geerinckx-Rice
d5542627fa
gnu: range-v3: Fix typo in description. 
* gnu/packages/cpp.scm (range-v3)[description]: Fix typo.
 2021-03-10 01:16:07 +01:00
Tobias Geerinckx-Rice
42364648ba
gnu: fcitx5: Update to 5.0.5. 
* gnu/packages/fcitx5.scm (fcitx5): Update to 5.0.5.
 2021-03-10 01:16:07 +01:00
Tobias Geerinckx-Rice
5f299b4a31
gnu: lmdb: Update to 0.9.28. 
* gnu/packages/databases.scm (lmdb): Update to 0.9.28.
 2021-03-10 01:16:07 +01:00
Léo Le Bouter
cbb5b5c4d5
gnu: git: Update to 2.30.2 [fixes CVE-2021-21300]. 
* gnu/packages/version-control.scm (git): Update to 2.30.2.
 2021-03-10 01:09:26 +01:00
Léo Le Bouter
6320700b11
gnu: libtiff: Update to 4.2.0 [security fixes]. 
Non-exhaustively, fixes CVE-2020-35523, CVE-2020-35522 and CVE-2020-35521.

* gnu/packages/image.scm (libtiff/fixed): New variable.
(libtiff)[replacement]: Graft.
 2021-03-10 00:52:47 +01:00
Raghav Gururajan
82a2f182c5
gnu: Add nextcloud-client. 
* gnu/packages/messaging.scm (nextcloud-client): New variable.

Signed-off-by: Leo Prikler <leo.prikler@student.tugraz.at>
 2021-03-10 00:19:49 +01:00
Raghav Gururajan
92a432c1f8
gnu: Add qtsolutions. 
* gnu/packages/qt.scm (qtsolutions): New variable.

Signed-off-by: Leo Prikler <leo.prikler@student.tugraz.at>
 2021-03-10 00:19:49 +01:00
Raghav Gururajan
afd83de087
gnu: Add appstream. 
* gnu/packages/freedesktop.scm (appstream): New variable.

Signed-off-by: Leo Prikler <leo.prikler@student.tugraz.at>
 2021-03-10 00:19:48 +01:00
Léo Le Bouter
82e887ba48
gnu: imagemagick: Update to 6.9.12-2 [security fixes]. 
* gnu/packages/imagemagick.scm (imagemagick/fixed): New variable.
(imagemagick)[replacement]: Graft.
 2021-03-09 23:02:51 +01:00
Ricardo Wurmus
6a38d580c7
gnu: r-lubridate: Update to 1.7.10. 
* gnu/packages/statistics.scm (r-lubridate): Update to 1.7.10.
 2021-03-09 22:05:32 +01:00
Ricardo Wurmus
382f539b5e
gnu: r-pbkrtest: Update to 0.5.1. 
* gnu/packages/statistics.scm (r-pbkrtest): Update to 0.5.1.
 2021-03-09 22:05:32 +01:00
Ricardo Wurmus
15add0c264
gnu: r-quantreg: Update to 5.85. 
* gnu/packages/statistics.scm (r-quantreg): Update to 5.85.
 2021-03-09 22:05:32 +01:00
Ricardo Wurmus
27b17f5e6c
gnu: r-matrixmodels: Update to 0.5-0. 
* gnu/packages/statistics.scm (r-matrixmodels): Update to 0.5-0.
 2021-03-09 22:05:32 +01:00
Ricardo Wurmus
12580eb435
gnu: r-beeswarm: Update to 0.3.1. 
* gnu/packages/statistics.scm (r-beeswarm): Update to 0.3.1.
 2021-03-09 22:05:32 +01:00
Ricardo Wurmus
83f98e6317
gnu: r-hmisc: Update to 4.5-0. 
* gnu/packages/statistics.scm (r-hmisc): Update to 4.5-0.
 2021-03-09 22:05:32 +01:00
Ricardo Wurmus
eddff93fd3
gnu: r-tidyr: Update to 1.1.3. 
* gnu/packages/statistics.scm (r-tidyr): Update to 1.1.3.
 2021-03-09 22:05:32 +01:00
Ricardo Wurmus
4f9f7e7eb2
gnu: r-glmnet: Update to 4.1-1. 
* gnu/packages/statistics.scm (r-glmnet): Update to 4.1-1.
 2021-03-09 22:05:32 +01:00
Ricardo Wurmus
7901124b5b
gnu: r-sparsem: Update to 1.81. 
* gnu/packages/statistics.scm (r-sparsem): Update to 1.81.
 2021-03-09 22:05:32 +01:00
Ricardo Wurmus
84e98bbc4f
gnu: r-segmented: Update to 1.3-3. 
* gnu/packages/statistics.scm (r-segmented): Update to 1.3-3.
 2021-03-09 22:05:31 +01:00
Ricardo Wurmus
395ab04137
gnu: r-rmarkdown: Update to 2.7. 
* gnu/packages/statistics.scm (r-rmarkdown): Update to 2.7.
 2021-03-09 22:05:31 +01:00
Ricardo Wurmus
658e44abdb
gnu: r-desc: Update to 1.3.0. 
* gnu/packages/statistics.scm (r-desc): Update to 1.3.0.
[propagated-inputs]: Remove r-assertthat.
 2021-03-09 22:05:31 +01:00
Ricardo Wurmus
2dcc88a153
gnu: r-data-table: Update to 1.14.0. 
* gnu/packages/statistics.scm (r-data-table): Update to 1.14.0.
 2021-03-09 22:05:31 +01:00
Ricardo Wurmus
47b8a239dc
gnu: r-dplyr: Update to 1.0.5. 
* gnu/packages/statistics.scm (r-dplyr): Update to 1.0.5.
 2021-03-09 22:05:31 +01:00
Ricardo Wurmus
9846034edc
gnu: r-tibble: Update to 3.1.0. 
* gnu/packages/statistics.scm (r-tibble): Update to 3.1.0.
[propagated-inputs]: Remove r-cli and r-crayon.
 2021-03-09 22:05:31 +01:00
Ricardo Wurmus
4a27e42fd6
gnu: r-testthat: Update to 3.0.2. 
* gnu/packages/statistics.scm (r-testthat): Update to 3.0.2.
 2021-03-09 22:05:31 +01:00
Ricardo Wurmus
440dd95f72
gnu: r-mime: Update to 0.10. 
* gnu/packages/statistics.scm (r-mime): Update to 0.10.
 2021-03-09 22:05:31 +01:00
Ricardo Wurmus
84bd32a964
gnu: r-svglite: Update to 2.0.0. 
* gnu/packages/statistics.scm (r-svglite): Update to 2.0.0.
[inputs]: Add libpng and zlib.
[propagated-inputs]: Remove r-bh, r-gdtools, and r-rcpp; add r-cpp11 and
r-systemfonts.
 2021-03-09 22:05:31 +01:00
Ricardo Wurmus
ba522c9fa3
gnu: r-mgcv: Update to 1.8-34. 
* gnu/packages/statistics.scm (r-mgcv): Update to 1.8-34.
 2021-03-09 22:05:31 +01:00
Ricardo Wurmus
ea2197cbe8
gnu: r-cluster: Update to 2.1.1. 
* gnu/packages/statistics.scm (r-cluster): Update to 2.1.1.
 2021-03-09 22:05:31 +01:00
Ricardo Wurmus
71939b503b
gnu: r-mass: Update to 7.3-53.1. 
* gnu/packages/statistics.scm (r-mass): Update to 7.3-53.1.
 2021-03-09 22:05:30 +01:00
Ricardo Wurmus
85b2d41eeb
gnu: r-boot: Update to 1.3-27. 
* gnu/packages/statistics.scm (r-boot): Update to 1.3-27.
 2021-03-09 22:05:30 +01:00
Ricardo Wurmus
31c9810b7e
gnu: r-ragg: Update to 1.1.1. 
* gnu/packages/cran.scm (r-ragg): Update to 1.1.1.
 2021-03-09 22:05:30 +01:00
Ricardo Wurmus
6c714c19f8
gnu: r-textshaping: Update to 0.3.1. 
* gnu/packages/cran.scm (r-textshaping): Update to 0.3.1.
 2021-03-09 22:05:30 +01:00
Ricardo Wurmus
bf7ad534e4
gnu: r-mlr3tuning: Update to 0.7.0. 
* gnu/packages/cran.scm (r-mlr3tuning): Update to 0.7.0.
 2021-03-09 22:05:30 +01:00
Ricardo Wurmus
9a9d470ae0
gnu: r-mlr3: Update to 0.11.0. 
* gnu/packages/cran.scm (r-mlr3): Update to 0.11.0.
[propagated-inputs]: Add r-palmerpenguins and r-parallelly.
 2021-03-09 22:05:30 +01:00
Ricardo Wurmus
ca718b9e34
gnu: r-paradox: Update to 0.7.1. 
* gnu/packages/cran.scm (r-paradox): Update to 0.7.1.
 2021-03-09 22:05:30 +01:00
Ricardo Wurmus
e08e5f9fe2
gnu: r-tune: Update to 0.1.3. 
* gnu/packages/cran.scm (r-tune): Update to 0.1.3.
[propagated-inputs]: Remove r-hardhat.
 2021-03-09 22:05:30 +01:00
Ricardo Wurmus
2d89c723ab
gnu: r-dicedesign: Update to 1.9. 
* gnu/packages/cran.scm (r-dicedesign): Update to 1.9.
 2021-03-09 22:05:30 +01:00
Ricardo Wurmus
b5b344fb26
gnu: r-rsample: Update to 0.0.9. 
* gnu/packages/cran.scm (r-rsample): Update to 0.0.9.
[propagated-inputs]: Remove r-modeldata.
 2021-03-09 22:05:30 +01:00
Ricardo Wurmus
8b1f08ba04
gnu: r-survminer: Update to 0.4.9. 
* gnu/packages/cran.scm (r-survminer): Update to 0.4.9.
[propagated-inputs]: Add r-ggtext.
 2021-03-09 22:05:30 +01:00
Ricardo Wurmus
abdb1090a7
gnu: r-flexsurv: Update to 2.0. 
* gnu/packages/cran.scm (r-flexsurv): Update to 2.0.
[propagated-inputs]: Add r-assertthat, r-dplyr, r-generics, r-magrittr,
r-matrix, r-numderiv, r-purrr, r-rlang, r-rstpm2, and r-tidyselect.
 2021-03-09 22:05:29 +01:00
Ricardo Wurmus
2be47c7a9a
gnu: r-isoband: Update to 0.2.4. 
* gnu/packages/cran.scm (r-isoband): Update to 0.2.4.
[propagated-inputs]: Remove r-testthat.
 2021-03-09 22:05:29 +01:00
Ricardo Wurmus
e59f4ecda8
gnu: r-erm: Update to 1.0-2. 
* gnu/packages/cran.scm (r-erm): Update to 1.0-2.
 2021-03-09 22:05:29 +01:00
Ricardo Wurmus
b631f7f8e4
gnu: r-openmx: Update to 2.19.1. 
* gnu/packages/cran.scm (r-openmx): Update to 2.19.1.
 2021-03-09 22:05:29 +01:00
Ricardo Wurmus
60f8539526
gnu: r-isocodes: Update to 2021.02.24. 
* gnu/packages/cran.scm (r-isocodes): Update to 2021.02.24.
 2021-03-09 22:05:29 +01:00
Ricardo Wurmus
61967afbc5
gnu: r-imager: Update to 0.42.7. 
* gnu/packages/cran.scm (r-imager): Update to 0.42.7.
 2021-03-09 22:05:29 +01:00
Ricardo Wurmus
8bf21d4076
gnu: r-gamlss: Update to 5.3-1. 
* gnu/packages/cran.scm (r-gamlss): Update to 5.3-1.
 2021-03-09 22:05:29 +01:00
Ricardo Wurmus
894308dddb
gnu: r-lifecycle: Update to 1.0.0. 
* gnu/packages/cran.scm (r-lifecycle): Update to 1.0.0.
 2021-03-09 22:05:29 +01:00
Ricardo Wurmus
a9797ab658
gnu: r-parameters: Update to 0.12.0. 
* gnu/packages/cran.scm (r-parameters): Update to 0.12.0.
 2021-03-09 22:05:29 +01:00
Ricardo Wurmus
ce5c9704b3
gnu: r-kableextra: Update to 1.3.4. 
* gnu/packages/cran.scm (r-kableextra): Update to 1.3.4.
[propagated-inputs]: Add r-svglite.
 2021-03-09 22:05:29 +01:00
Ricardo Wurmus
fa82677b27
gnu: r-dalex: Update to 2.1.1. 
* gnu/packages/cran.scm (r-dalex): Update to 2.1.1.
 2021-03-09 22:05:28 +01:00
Ricardo Wurmus
6802fe3cb7
gnu: r-xmlparsedata: Update to 1.0.5. 
* gnu/packages/cran.scm (r-xmlparsedata): Update to 1.0.5.
 2021-03-09 22:05:28 +01:00
Ricardo Wurmus
744190fe45
gnu: r-ggraph: Update to 2.0.5. 
* gnu/packages/cran.scm (r-ggraph): Update to 2.0.5.
 2021-03-09 22:05:28 +01:00
Ricardo Wurmus
df20df3512
gnu: r-ggforce: Update to 0.3.3. 
* gnu/packages/cran.scm (r-ggforce): Update to 0.3.3.
 2021-03-09 22:05:28 +01:00
Ricardo Wurmus
a5cfb3f330
gnu: r-farver: Update to 2.1.0. 
* gnu/packages/cran.scm (r-farver): Update to 2.1.0.
 2021-03-09 22:05:28 +01:00
Ricardo Wurmus
b96724c423
gnu: r-arsenal: Update to 3.6.2. 
* gnu/packages/cran.scm (r-arsenal): Update to 3.6.2.
 2021-03-09 22:05:28 +01:00
Ricardo Wurmus
ab8c8693c1
gnu: r-genetics: Update to 1.3.8.1.3. 
* gnu/packages/cran.scm (r-genetics): Update to 1.3.8.1.3.
 2021-03-09 22:05:28 +01:00
Ricardo Wurmus
5a3996538c
gnu: r-deldir: Update to 0.2-10. 
* gnu/packages/cran.scm (r-deldir): Update to 0.2-10.
 2021-03-09 22:05:28 +01:00
Ricardo Wurmus
8c866232e1
gnu: r-units: Update to 0.7-0. 
* gnu/packages/cran.scm (r-units): Update to 0.7-0.
 2021-03-09 22:05:28 +01:00
Ricardo Wurmus
a9ab876114
gnu: r-gamlss-dist: Update to 5.3-2. 
* gnu/packages/cran.scm (r-gamlss-dist): Update to 5.3-2.
 2021-03-09 22:05:28 +01:00
Ricardo Wurmus
34471fa1b2
gnu: r-shinyjqui: Update to 0.4.0. 
* gnu/packages/cran.scm (r-shinyjqui): Update to 0.4.0.
 2021-03-09 22:05:28 +01:00
Ricardo Wurmus
089a3a7fcd
gnu: r-epi: Update to 2.44. 
* gnu/packages/cran.scm (r-epi): Update to 2.44.
 2021-03-09 22:05:28 +01:00
Ricardo Wurmus
690940cc53
gnu: r-dotcall64: Update to 1.0-1. 
* gnu/packages/cran.scm (r-dotcall64): Update to 1.0-1.
 2021-03-09 22:05:28 +01:00
Ricardo Wurmus
b63f13b59f
gnu: r-gargle: Update to 1.0.0. 
* gnu/packages/cran.scm (r-gargle): Update to 1.0.0.
 2021-03-09 22:05:27 +01:00
Ricardo Wurmus
1443bb0f19
gnu: r-tiff: Update to 0.1-7. 
* gnu/packages/cran.scm (r-tiff): Update to 0.1-7.
 2021-03-09 22:05:27 +01:00
Ricardo Wurmus
cf1ef75cc4
gnu: r-fftwtools: Update to 0.9-11. 
* gnu/packages/cran.scm (r-fftwtools): Update to 0.9-11.
[native-inputs]: Add pkg-config.
 2021-03-09 22:05:27 +01:00
Ricardo Wurmus
7fab62cecb
gnu: r-ouch: Update to 2.15-1. 
* gnu/packages/cran.scm (r-ouch): Update to 2.15-1.
 2021-03-09 22:05:27 +01:00
Ricardo Wurmus
1ef3abaff3
gnu: r-activity: Update to 1.3.1. 
* gnu/packages/cran.scm (r-activity): Update to 1.3.1.
 2021-03-09 22:05:27 +01:00
Ricardo Wurmus
1b9009ce98
gnu: r-rgl: Update to 0.105.22. 
* gnu/packages/cran.scm (r-rgl): Update to 0.105.22.
 2021-03-09 22:05:27 +01:00
Ricardo Wurmus
ed7f3e3c2f
gnu: r-rcppparallel: Update to 5.0.3. 
* gnu/packages/cran.scm (r-rcppparallel): Update to 5.0.3.
 2021-03-09 22:05:27 +01:00
Ricardo Wurmus
7db329a300
gnu: r-mvabund: Update to 4.1.9. 
* gnu/packages/cran.scm (r-mvabund): Update to 4.1.9.
 2021-03-09 22:05:27 +01:00
Ricardo Wurmus
70d490eb73
gnu: r-gert: Update to 1.2.0. 
* gnu/packages/cran.scm (r-gert): Update to 1.2.0.
 2021-03-09 22:05:27 +01:00
Ricardo Wurmus
4c113c54f1
gnu: r-labelled: Update to 2.8.0. 
* gnu/packages/cran.scm (r-labelled): Update to 2.8.0.
[propagated-inputs]: Remove r-pillar; add r-stringr.
 2021-03-09 22:05:27 +01:00
Ricardo Wurmus
2dae640d8a
gnu: r-doby: Update to 4.6.9. 
* gnu/packages/cran.scm (r-doby): Update to 4.6.9.
 2021-03-09 22:05:27 +01:00
Ricardo Wurmus
c1037edc89
gnu: r-deriv: Update to 4.1.3. 
* gnu/packages/cran.scm (r-deriv): Update to 4.1.3.
 2021-03-09 22:05:27 +01:00
Ricardo Wurmus
111400674f
gnu: r-insight: Update to 0.13.1. 
* gnu/packages/cran.scm (r-insight): Update to 0.13.1.
 2021-03-09 22:05:26 +01:00
Ricardo Wurmus
ad037d6ecb
gnu: r-officer: Update to 0.3.17. 
* gnu/packages/cran.scm (r-officer): Update to 0.3.17.
 2021-03-09 22:05:26 +01:00
Ricardo Wurmus
0281b306ca
gnu: r-rdpack: Update to 2.1.1. 
* gnu/packages/cran.scm (r-rdpack): Update to 2.1.1.
[propagated-inputs]: Remove r-gbrd.
 2021-03-09 22:05:26 +01:00
Ricardo Wurmus
fdf375346a
gnu: r-rstatix: Update to 0.7.0. 
* gnu/packages/cran.scm (r-rstatix): Update to 0.7.0.
 2021-03-09 22:05:26 +01:00
Ricardo Wurmus
b6d9965d41
gnu: r-ggsignif: Update to 0.6.1. 
* gnu/packages/cran.scm (r-ggsignif): Update to 0.6.1.
 2021-03-09 22:05:26 +01:00
Ricardo Wurmus
2c49fe4063
gnu: r-renv: Update to 0.13.0. 
* gnu/packages/cran.scm (r-renv): Update to 0.13.0.
 2021-03-09 22:05:26 +01:00
Ricardo Wurmus
b592c4dbe6
gnu: r-rastervis: Update to 0.50. 
* gnu/packages/cran.scm (r-rastervis): Update to 0.50.
[propagated-inputs]: Add r-terra.
 2021-03-09 22:05:26 +01:00
Ricardo Wurmus
9d9d11b5d3
gnu: r-promises: Update to 1.2.0.1. 
* gnu/packages/cran.scm (r-promises): Update to 1.2.0.1.
 2021-03-09 22:05:26 +01:00
Ricardo Wurmus
0505facdd5
gnu: r-rio: Update to 0.5.26. 
* gnu/packages/cran.scm (r-rio): Update to 0.5.26.
[native-inputs]: Add r-knitr.
 2021-03-09 22:05:26 +01:00
Ricardo Wurmus
1774703383
gnu: r-tinytex: Update to 0.30. 
* gnu/packages/cran.scm (r-tinytex): Update to 0.30.
 2021-03-09 22:05:26 +01:00
Ricardo Wurmus
bd1ff10ea0
gnu: r-pillar: Update to 1.5.1. 
* gnu/packages/cran.scm (r-pillar): Update to 1.5.1.
[native-inputs]: Add r-knitr.
 2021-03-09 22:05:26 +01:00
Ricardo Wurmus
6fe7e138b9
gnu: r-argparser: Update to 0.7.1. 
* gnu/packages/cran.scm (r-argparser): Update to 0.7.1.
 2021-03-09 22:05:26 +01:00
Ricardo Wurmus
5136cc1306
gnu: r-cli: Update to 2.3.1. 
* gnu/packages/cran.scm (r-cli): Update to 2.3.1.
 2021-03-09 22:05:25 +01:00
Ricardo Wurmus
0496ce3c44
gnu: r-broom: Update to 0.7.5. 
* gnu/packages/cran.scm (r-broom): Update to 0.7.5.
 2021-03-09 22:05:25 +01:00
Ricardo Wurmus
6c7d9efdd8
gnu: r-ipred: Update to 0.9-10. 
* gnu/packages/cran.scm (r-ipred): Update to 0.9-10.
 2021-03-09 22:05:25 +01:00
Ricardo Wurmus
b3700e61d4
gnu: r-energy: Update to 1.7-8. 
* gnu/packages/cran.scm (r-energy): Update to 1.7-8.
[propagated-inputs]: Add r-gsl.
 2021-03-09 22:05:25 +01:00
Ricardo Wurmus
37097b923c
gnu: r-rmpi: Update to 0.6-9.1. 
* gnu/packages/cran.scm (r-rmpi): Update to 0.6-9.1.
 2021-03-09 22:05:25 +01:00
Ricardo Wurmus
4fcbe65d61
gnu: r-proxy: Update to 0.4-25. 
* gnu/packages/cran.scm (r-proxy): Update to 0.4-25.
 2021-03-09 22:05:25 +01:00
Ricardo Wurmus
adbd713085
gnu: r-ggally: Update to 2.1.1. 
* gnu/packages/cran.scm (r-ggally): Update to 2.1.1.
 2021-03-09 22:05:25 +01:00
Ricardo Wurmus
7ff93d3483
gnu: r-ffbase: Update to 0.13.3. 
* gnu/packages/cran.scm (r-ffbase): Update to 0.13.3.
 2021-03-09 22:05:25 +01:00
Ricardo Wurmus
84e39b3d99
gnu: r-pkgload: Update to 1.2.0. 
* gnu/packages/cran.scm (r-pkgload): Update to 1.2.0.
 2021-03-09 22:05:25 +01:00
Ricardo Wurmus
601a112bb2
gnu: r-ps: Update to 1.6.0. 
* gnu/packages/cran.scm (r-ps): Update to 1.6.0.
 2021-03-09 22:05:25 +01:00
Ricardo Wurmus
f0f2e2cbda
gnu: r-partykit: Update to 1.2-13. 
* gnu/packages/cran.scm (r-partykit): Update to 1.2-13.
 2021-03-09 22:05:25 +01:00
Ricardo Wurmus
fa00e35b9e
gnu: r-rticles: Update to 0.19. 
* gnu/packages/cran.scm (r-rticles): Update to 0.19.
 2021-03-09 22:05:25 +01:00
Ricardo Wurmus
260259f5ef
gnu: r-waldo: Update to 0.2.5. 
* gnu/packages/cran.scm (r-waldo): Update to 0.2.5.
 2021-03-09 22:05:25 +01:00
Ricardo Wurmus
4be2e0f309
gnu: r-cachem: Update to 1.0.4. 
* gnu/packages/cran.scm (r-cachem): Update to 1.0.4.
 2021-03-09 22:05:24 +01:00
Ricardo Wurmus
ef8e4f4172
gnu: r-wgcna: Update to 1.70-3. 
* gnu/packages/bioconductor.scm (r-wgcna): Update to 1.70-3.
 2021-03-09 22:05:24 +01:00
Ricardo Wurmus
7fffee5e34
gnu: Add r-terra. 
* gnu/packages/cran.scm (r-terra): New variable.
 2021-03-09 22:05:24 +01:00
Ricardo Wurmus
1bbf632574
gnu: Add r-ggtext. 
* gnu/packages/cran.scm (r-ggtext): New variable.
 2021-03-09 22:05:24 +01:00
Ricardo Wurmus
c341a4d02e
gnu: Add r-gridtext. 
* gnu/packages/cran.scm (r-gridtext): New variable.
 2021-03-09 22:05:24 +01:00
Ricardo Wurmus
91aa72bfe2
gnu: Add r-palmerpenguins. 
* gnu/packages/cran.scm (r-palmerpenguins): New variable.
 2021-03-09 22:05:24 +01:00
Ricardo Wurmus
bcdf0cf3a5
gnu: Add r-rstpm2. 
* gnu/packages/cran.scm (r-rstpm2): New variable.
 2021-03-09 22:05:24 +01:00
Ricardo Wurmus
3c04e179b7
gnu: Add r-fastghquad. 
* gnu/packages/cran.scm (r-fastghquad): New variable.
 2021-03-09 22:05:24 +01:00
Efraim Flashner
80c83756e9
gnu: evisum: Update to 0.5.11. 
* gnu/packages/enlightenment.scm (evisum): Update to 0.5.11.
 2021-03-09 22:59:20 +02:00
Felix Gruber
251b0f7a6f
gnu: vtk: Fix build failure. 
* gnu/packages/image-processing.scm (vtk): Fix build failure.
[source]: Add patch to fix build failure with recent versions of freetype.
* gnu/packages/patches/vtk-fix-freetypetools-build-failure.patch: New file.
* gnu/local.mk (dist_patch_DATA): Add it.

Signed-off-by: Efraim Flashner <efraim@flashner.co.il>
 2021-03-09 22:32:41 +02:00