Commit Graph

75924 Commits

Author SHA1 Message Date
Ricardo Wurmus
b5e67f5747
gnu: r-lpsymphony: Update to 1.22.0.
* gnu/packages/bioconductor.scm (r-lpsymphony): Update to 1.22.0.
2021-11-07 22:34:44 +00:00
Ricardo Wurmus
2b0a656fd7
gnu: r-karyoploter: Update to 1.20.0.
* gnu/packages/bioconductor.scm (r-karyoploter): Update to 1.20.0.
2021-11-07 22:34:44 +00:00
Ricardo Wurmus
d9b6a42297
gnu: r-ebseq: Update to 1.34.0.
* gnu/packages/bioconductor.scm (r-ebseq): Update to 1.34.0.
2021-11-07 22:34:44 +00:00
Ricardo Wurmus
e639d03112
gnu: r-dnacopy: Update to 1.68.0.
* gnu/packages/bioconductor.scm (r-dnacopy): Update to 1.68.0.
2021-11-07 22:34:44 +00:00
Ricardo Wurmus
efb1b28f32
gnu: r-copynumber: Update to 1.34.0.
* gnu/packages/bioconductor.scm (r-copynumber): Update to 1.34.0.
2021-11-07 22:34:44 +00:00
Ricardo Wurmus
7c4992115c
gnu: r-chipexoqual: Update to 1.18.0.
* gnu/packages/bioconductor.scm (r-chipexoqual): Update to 1.18.0.
2021-11-07 22:34:44 +00:00
Ricardo Wurmus
5c53d21450
gnu: r-savr: Update to 1.32.0.
* gnu/packages/bioconductor.scm (r-savr): Update to 1.32.0.
2021-11-07 22:34:44 +00:00
Ricardo Wurmus
8c6a0221fb
gnu: r-biocsingular: Update to 1.10.0.
* gnu/packages/bioconductor.scm (r-biocsingular): Update to 1.10.0.
2021-11-07 22:34:44 +00:00
Ricardo Wurmus
fae42c164b
gnu: r-metapod: Update to 1.2.0.
* gnu/packages/bioconductor.scm (r-metapod): Update to 1.2.0.
2021-11-07 22:34:44 +00:00
Ricardo Wurmus
9a79db434a
gnu: r-ggtree: Update to 3.2.0.
* gnu/packages/bioconductor.scm (r-ggtree): Update to 3.2.0.
2021-11-07 22:34:44 +00:00
Ricardo Wurmus
eb7a7bacbc
gnu: r-treeio: Update to 1.18.0.
* gnu/packages/bioconductor.scm (r-treeio): Update to 1.18.0.
2021-11-07 22:34:44 +00:00
Ricardo Wurmus
496260ddf1
gnu: r-scaledmatrix: Update to 1.2.0.
* gnu/packages/bioconductor.scm (r-scaledmatrix): Update to 1.2.0.
2021-11-07 22:34:43 +00:00
Ricardo Wurmus
651d54ef51
gnu: r-biocneighbors: Update to 1.12.0.
* gnu/packages/bioconductor.scm (r-biocneighbors): Update to 1.12.0.
2021-11-07 22:34:43 +00:00
Ricardo Wurmus
7ec0b978de
gnu: r-ruvseq: Update to 1.28.0.
* gnu/packages/bioconductor.scm (r-ruvseq): Update to 1.28.0.
2021-11-07 22:34:43 +00:00
Ricardo Wurmus
6f2ef7761a
gnu: r-dnabarcodes: Update to 1.24.0.
* gnu/packages/bioconductor.scm (r-dnabarcodes): Update to 1.24.0.
2021-11-07 22:34:43 +00:00
Ricardo Wurmus
fff0fe2ec9
gnu: r-inspect: Update to 1.24.0.
* gnu/packages/bioconductor.scm (r-inspect): Update to 1.24.0.
2021-11-07 22:34:43 +00:00
Ricardo Wurmus
92f690c1b0
gnu: r-plgem: Update to 1.66.0.
* gnu/packages/bioconductor.scm (r-plgem): Update to 1.66.0.
2021-11-07 22:34:43 +00:00
Ricardo Wurmus
e5cd10e99d
gnu: r-rots: Update to 1.22.0.
* gnu/packages/bioconductor.scm (r-rots): Update to 1.22.0.
2021-11-07 22:34:43 +00:00
Ricardo Wurmus
9050a5c7f6
gnu: r-glimma: Update to 2.4.0.
* gnu/packages/bioconductor.scm (r-glimma): Update to 2.4.0.
2021-11-07 22:34:43 +00:00
Ricardo Wurmus
6ad43d2d78
gnu: r-goseq: Update to 1.46.0.
* gnu/packages/bioconductor.scm (r-goseq): Update to 1.46.0.
2021-11-07 22:34:43 +00:00
Ricardo Wurmus
e9feedb902
gnu: r-ctc: Update to 1.68.0.
* gnu/packages/bioconductor.scm (r-ctc): Update to 1.68.0.
2021-11-07 22:34:43 +00:00
Ricardo Wurmus
6371513fd0
gnu: r-genomicinteractions: Update to 1.28.0.
* gnu/packages/bioconductor.scm (r-genomicinteractions): Update to 1.28.0.
2021-11-07 22:34:43 +00:00
Ricardo Wurmus
3dac6963f9
gnu: r-interactionset: Update to 1.22.0.
* gnu/packages/bioconductor.scm (r-interactionset): Update to 1.22.0.
2021-11-07 22:34:43 +00:00
Ricardo Wurmus
56da30065a
gnu: r-riboseqr: Update to 1.28.0.
* gnu/packages/bioconductor.scm (r-riboseqr): Update to 1.28.0.
2021-11-07 22:34:43 +00:00
Ricardo Wurmus
765052f5dc
gnu: r-riboprofiling: Update to 1.24.0.
* gnu/packages/bioconductor.scm (r-riboprofiling): Update to 1.24.0.
2021-11-07 22:34:43 +00:00
Ricardo Wurmus
4f094515b0
gnu: r-chipcomp: Update to 1.24.0.
* gnu/packages/bioconductor.scm (r-chipcomp): Update to 1.24.0.
2021-11-07 22:34:43 +00:00
Ricardo Wurmus
f1cc328101
gnu: r-bayseq: Update to 2.28.0.
* gnu/packages/bioconductor.scm (r-bayseq): Update to 2.28.0.
2021-11-07 22:34:42 +00:00
Ricardo Wurmus
29bfd56aa0
gnu: r-qdnaseq: Update to 1.30.0.
* gnu/packages/bioconductor.scm (r-qdnaseq): Update to 1.30.0.
[propagated-inputs]: Remove r-future.
2021-11-07 22:34:42 +00:00
Ricardo Wurmus
19fb6bae8c
gnu: r-cghcall: Update to 2.56.0.
* gnu/packages/bioconductor.scm (r-cghcall): Update to 2.56.0.
2021-11-07 22:34:42 +00:00
Ricardo Wurmus
c5cb1e0118
gnu: r-cghbase: Update to 1.54.0.
* gnu/packages/bioconductor.scm (r-cghbase): Update to 1.54.0.
2021-11-07 22:34:42 +00:00
Ricardo Wurmus
c6cff9686b
gnu: r-marray: Update to 1.72.0.
* gnu/packages/bioconductor.scm (r-marray): Update to 1.72.0.
2021-11-07 22:34:42 +00:00
Ricardo Wurmus
7bda0a9220
gnu: r-matrixgenerics: Update to 1.6.0.
* gnu/packages/bioconductor.scm (r-matrixgenerics): Update to 1.6.0.
2021-11-07 22:34:42 +00:00
Ricardo Wurmus
0d11010cef
gnu: r-chippeakanno: Update to 3.28.0.
* gnu/packages/bioconductor.scm (r-chippeakanno): Update to 3.28.0.
2021-11-07 22:34:42 +00:00
Ricardo Wurmus
aad12099dd
gnu: r-graph: Update to 1.72.0.
* gnu/packages/bioconductor.scm (r-graph): Update to 1.72.0.
2021-11-07 22:34:42 +00:00
Ricardo Wurmus
d6a3debb6d
gnu: r-multtest: Update to 2.50.0.
* gnu/packages/bioconductor.scm (r-multtest): Update to 2.50.0.
2021-11-07 22:34:42 +00:00
Ricardo Wurmus
8826132332
gnu: r-mbkmeans: Update to 1.10.0.
* gnu/packages/bioconductor.scm (r-mbkmeans): Update to 1.10.0.
2021-11-07 22:34:42 +00:00
Ricardo Wurmus
6f6478b175
gnu: r-diffbind: Update to 3.4.0.
* gnu/packages/bioconductor.scm (r-diffbind): Update to 3.4.0.
2021-11-07 22:34:42 +00:00
Ricardo Wurmus
d05485f7f7
gnu: r-greylistchip: Update to 1.26.0.
* gnu/packages/bioconductor.scm (r-greylistchip): Update to 1.26.0.
2021-11-07 22:34:42 +00:00
Ricardo Wurmus
88c203a85f
gnu: r-apeglm: Update to 1.16.0.
* gnu/packages/bioconductor.scm (r-apeglm): Update to 1.16.0.
2021-11-07 22:34:42 +00:00
Ricardo Wurmus
c6c1f9fc72
gnu: r-qvalue: Update to 2.26.0.
* gnu/packages/bioconductor.scm (r-qvalue): Update to 2.26.0.
2021-11-07 22:34:42 +00:00
Ricardo Wurmus
980a36cbee
gnu: r-oligo: Update to 1.58.0.
* gnu/packages/bioconductor.scm (r-oligo): Update to 1.58.0.
2021-11-07 22:34:42 +00:00
Ricardo Wurmus
0cffd15771
gnu: r-oligoclasses: Update to 1.56.0.
* gnu/packages/bioconductor.scm (r-oligoclasses): Update to 1.56.0.
2021-11-07 22:34:41 +00:00
Ricardo Wurmus
319038ace3
gnu: r-geneplotter: Update to 1.72.0.
* gnu/packages/bioconductor.scm (r-geneplotter): Update to 1.72.0.
2021-11-07 22:34:41 +00:00
Ricardo Wurmus
c3a3c417c0
gnu: r-zlibbioc: Update to 1.40.0.
* gnu/packages/bioconductor.scm (r-zlibbioc): Update to 1.40.0.
2021-11-07 22:34:41 +00:00
Ricardo Wurmus
469cf86fa2
gnu: r-xvector: Update to 0.34.0.
* gnu/packages/bioconductor.scm (r-xvector): Update to 0.34.0.
2021-11-07 22:34:41 +00:00
Ricardo Wurmus
0b341967e3
gnu: r-vsn: Update to 3.62.0.
* gnu/packages/bioconductor.scm (r-vsn): Update to 3.62.0.
2021-11-07 22:34:41 +00:00
Ricardo Wurmus
e174313541
gnu: r-variantannotation: Update to 1.40.0.
* gnu/packages/bioconductor.scm (r-variantannotation): Update to 1.40.0.
2021-11-07 22:34:41 +00:00
Ricardo Wurmus
47c3ec038e
gnu: r-tximport: Update to 1.22.0.
* gnu/packages/bioconductor.scm (r-tximport): Update to 1.22.0.
2021-11-07 22:34:41 +00:00
Ricardo Wurmus
bb69853f89
gnu: r-topgo: Update to 2.46.0.
* gnu/packages/bioconductor.scm (r-topgo): Update to 2.46.0.
2021-11-07 22:34:41 +00:00
Ricardo Wurmus
442a355026
gnu: r-systempiper: Update to 2.0.0.
* gnu/packages/bioconductor.scm (r-systempiper): Update to 2.0.0.
[propagated-inputs]: Remove r-annotate, r-assertthat, r-batchtools, r-deseq2, r-dot,
r-edger, r-genomicfeatures, r-go-db, r-gostats, r-iranges, r-limma,
r-pheatmap, r-rjson, r-rsvg, r-testthat, and r-variantannotation; add
r-biocgenerics and r-htmlwidgets.
2021-11-07 22:34:41 +00:00
Ricardo Wurmus
c3d9b4b097
gnu: r-sva: Update to 3.42.0.
* gnu/packages/bioconductor.scm (r-sva): Update to 3.42.0.
2021-11-07 22:34:41 +00:00
Ricardo Wurmus
679abce085
gnu: r-summarizedexperiment: Update to 1.24.0.
* gnu/packages/bioconductor.scm (r-summarizedexperiment): Update to 1.24.0.
2021-11-07 22:34:41 +00:00
Ricardo Wurmus
2a3f2f002e
gnu: r-structuralvariantannotation: Update to 1.10.0.
* gnu/packages/bioconductor.scm (r-structuralvariantannotation): Update to 1.10.0.
2021-11-07 22:34:41 +00:00
Ricardo Wurmus
41e1bf39aa
gnu: r-slingshot: Update to 2.2.0.
* gnu/packages/bioconductor.scm (r-slingshot): Update to 2.2.0.
2021-11-07 22:34:41 +00:00
Ricardo Wurmus
91c78f9527
gnu: r-trajectoryutils: Update to 1.2.0.
* gnu/packages/bioconductor.scm (r-trajectoryutils): Update to 1.2.0.
2021-11-07 22:34:41 +00:00
Ricardo Wurmus
9398e3e047
gnu: r-simplifyenrichment: Update to 1.4.0.
* gnu/packages/bioconductor.scm (r-simplifyenrichment): Update to 1.4.0.
2021-11-07 22:34:41 +00:00
Ricardo Wurmus
bf90dbefcc
gnu: r-shortread: Update to 1.52.0.
* gnu/packages/bioconductor.scm (r-shortread): Update to 1.52.0.
2021-11-07 22:34:40 +00:00
Ricardo Wurmus
f1dedc13dc
gnu: r-seqpattern: Update to 1.26.0.
* gnu/packages/bioconductor.scm (r-seqpattern): Update to 1.26.0.
2021-11-07 22:34:40 +00:00
Ricardo Wurmus
09d921d442
gnu: r-seqlogo: Update to 1.60.0.
* gnu/packages/bioconductor.scm (r-seqlogo): Update to 1.60.0.
2021-11-07 22:34:40 +00:00
Ricardo Wurmus
d076801410
gnu: r-rtracklayer: Update to 1.54.0.
* gnu/packages/bioconductor.scm (r-rtracklayer): Update to 1.54.0.
2021-11-07 22:34:40 +00:00
Ricardo Wurmus
f0774df7c1
gnu: r-rsamtools: Update to 2.10.0.
* gnu/packages/bioconductor.scm (r-rsamtools): Update to 2.10.0.
2021-11-07 22:34:40 +00:00
Ricardo Wurmus
e38d619476
gnu: r-rhdf5filters: Update to 1.6.0.
* gnu/packages/bioconductor.scm (r-rhdf5filters): Update to 1.6.0.
2021-11-07 22:34:40 +00:00
Ricardo Wurmus
148e520d4a
gnu: r-rhdf5: Update to 2.38.0.
* gnu/packages/bioconductor.scm (r-rhdf5): Update to 2.38.0.
2021-11-07 22:34:40 +00:00
Ricardo Wurmus
559953466e
gnu: r-reportingtools: Update to 2.34.0.
* gnu/packages/bioconductor.scm (r-reportingtools): Update to 2.34.0.
2021-11-07 22:34:40 +00:00
Ricardo Wurmus
cbf8dbc3cb
gnu: r-regioner: Update to 1.26.0.
* gnu/packages/bioconductor.scm (r-regioner): Update to 1.26.0.
2021-11-07 22:34:40 +00:00
Ricardo Wurmus
c4908b9eff
gnu: r-rcas: Update to 1.20.0.
* gnu/packages/bioconductor.scm (r-rcas): Update to 1.20.0.
2021-11-07 22:34:40 +00:00
Ricardo Wurmus
3caf93321d
gnu: r-rbgl: Update to 1.70.0.
* gnu/packages/bioconductor.scm (r-rbgl): Update to 1.70.0.
2021-11-07 22:34:40 +00:00
Ricardo Wurmus
dc4cc2aa32
gnu: r-protgenerics: Update to 1.26.0.
* gnu/packages/bioconductor.scm (r-protgenerics): Update to 1.26.0.
2021-11-07 22:34:40 +00:00
Ricardo Wurmus
78fd768566
gnu: r-pcamethods: Update to 1.86.0.
* gnu/packages/bioconductor.scm (r-pcamethods): Update to 1.86.0.
2021-11-07 22:34:40 +00:00
Ricardo Wurmus
ada8646a38
gnu: r-organismdbi: Update to 1.36.0.
* gnu/packages/bioconductor.scm (r-organismdbi): Update to 1.36.0.
2021-11-07 22:34:40 +00:00
Ricardo Wurmus
3de4beb013
gnu: r-mzr: Update to 2.28.0.
* gnu/packages/bioconductor.scm (r-mzr): Update to 2.28.0.
2021-11-07 22:34:39 +00:00
Ricardo Wurmus
62d157a2e2
gnu: r-mzid: Update to 1.32.0.
* gnu/packages/bioconductor.scm (r-mzid): Update to 1.32.0.
2021-11-07 22:34:39 +00:00
Ricardo Wurmus
a6402a7fee
gnu: r-msnid: Update to 1.28.0.
* gnu/packages/bioconductor.scm (r-msnid): Update to 1.28.0.
2021-11-07 22:34:39 +00:00
Ricardo Wurmus
35e1bdc5b8
gnu: r-msnbase: Update to 2.20.0.
* gnu/packages/bioconductor.scm (r-msnbase): Update to 2.20.0.
2021-11-07 22:34:39 +00:00
Ricardo Wurmus
b96f76aff0
gnu: r-mutationalpatterns: Update to 3.4.0.
* gnu/packages/bioconductor.scm (r-mutationalpatterns): Update to 3.4.0.
[propagated-inputs]: Add r-rcolorbrewer.
2021-11-07 22:34:39 +00:00
Ricardo Wurmus
d4a0101ad9
gnu: r-methylkit: Update to 1.20.0.
* gnu/packages/bioconductor.scm (r-methylkit): Update to 1.20.0.
2021-11-07 22:34:39 +00:00
Ricardo Wurmus
0465cc8251
gnu: r-limma: Update to 3.50.0.
* gnu/packages/bioconductor.scm (r-limma): Update to 3.50.0.
2021-11-07 22:34:39 +00:00
Ricardo Wurmus
a0cc78a554
gnu: r-keggrest: Update to 1.34.0.
* gnu/packages/bioconductor.scm (r-keggrest): Update to 1.34.0.
2021-11-07 22:34:39 +00:00
Ricardo Wurmus
1fa012822d
gnu: r-interactivedisplaybase: Update to 1.32.0.
* gnu/packages/bioconductor.scm (r-interactivedisplaybase): Update to 1.32.0.
2021-11-07 22:34:39 +00:00
Ricardo Wurmus
b6bd74cefb
gnu: r-impute: Update to 1.68.0.
* gnu/packages/bioconductor.scm (r-impute): Update to 1.68.0.
2021-11-07 22:34:39 +00:00
Ricardo Wurmus
eeeb38d569
gnu: r-rhtslib: Update to 1.26.0.
* gnu/packages/bioconductor.scm (r-rhtslib): Update to 1.26.0.
2021-11-07 22:34:39 +00:00
Ricardo Wurmus
bcd10420cc
gnu: r-hpar: Update to 1.36.0.
* gnu/packages/bioconductor.scm (r-hpar): Update to 1.36.0.
2021-11-07 22:34:39 +00:00
Ricardo Wurmus
df5553ee14
gnu: r-gseabase: Update to 1.56.0.
* gnu/packages/bioconductor.scm (r-gseabase): Update to 1.56.0.
2021-11-07 22:34:39 +00:00
Ricardo Wurmus
8148c6ba72
gnu: r-gostats: Update to 2.60.0.
* gnu/packages/bioconductor.scm (r-gostats): Update to 2.60.0.
2021-11-07 22:34:39 +00:00
Ricardo Wurmus
98c8e7f735
gnu: r-genomicranges: Update to 1.46.0.
* gnu/packages/bioconductor.scm (r-genomicranges): Update to 1.46.0.
2021-11-07 22:34:39 +00:00
Ricardo Wurmus
36ea351603
gnu: r-genomicfiles: Update to 1.30.0.
* gnu/packages/bioconductor.scm (r-genomicfiles): Update to 1.30.0.
2021-11-07 22:34:38 +00:00
Ricardo Wurmus
60d5b89717
gnu: r-genomicfeatures: Update to 1.46.1.
* gnu/packages/bioconductor.scm (r-genomicfeatures): Update to 1.46.1.
2021-11-07 22:34:38 +00:00
Ricardo Wurmus
f599ef1cc4
gnu: r-genomicalignments: Update to 1.30.0.
* gnu/packages/bioconductor.scm (r-genomicalignments): Update to 1.30.0.
2021-11-07 22:34:38 +00:00
Ricardo Wurmus
9122892ec9
gnu: r-genomeinfodb: Update to 1.30.0.
* gnu/packages/bioconductor.scm (r-genomeinfodb): Update to 1.30.0.
2021-11-07 22:34:38 +00:00
Ricardo Wurmus
251e6950d8
gnu: r-genomation: Update to 1.26.0.
* gnu/packages/bioconductor.scm (r-genomation): Update to 1.26.0.
2021-11-07 22:34:38 +00:00
Ricardo Wurmus
38d13a6747
gnu: r-geneoverlap: Update to 1.30.0.
* gnu/packages/bioconductor.scm (r-geneoverlap): Update to 1.30.0.
2021-11-07 22:34:38 +00:00
Ricardo Wurmus
7e80f6fb57
gnu: r-genefilter: Update to 1.76.0.
* gnu/packages/bioconductor.scm (r-genefilter): Update to 1.76.0.
2021-11-07 22:34:38 +00:00
Ricardo Wurmus
3a2cab95b1
gnu: r-gage: Update to 2.44.0.
* gnu/packages/bioconductor.scm (r-gage): Update to 2.44.0.
2021-11-07 22:34:38 +00:00
Ricardo Wurmus
309e04ba18
gnu: r-fastseg: Update to 1.40.0.
* gnu/packages/bioconductor.scm (r-fastseg): Update to 1.40.0.
2021-11-07 22:34:38 +00:00
Ricardo Wurmus
7973617595
gnu: r-ensembldb: Update to 2.18.0.
* gnu/packages/bioconductor.scm (r-ensembldb): Update to 2.18.0.
2021-11-07 22:34:38 +00:00
Ricardo Wurmus
46663d5769
gnu: r-edger: Update to 3.36.0.
* gnu/packages/bioconductor.scm (r-edger): Update to 3.36.0.
2021-11-07 22:34:38 +00:00
Ricardo Wurmus
933366ffe7
gnu: r-edaseq: Update to 2.28.0.
* gnu/packages/bioconductor.scm (r-edaseq): Update to 2.28.0.
2021-11-07 22:34:38 +00:00
Ricardo Wurmus
de8089a767
gnu: r-dirichletmultinomial: Update to 1.36.0.
* gnu/packages/bioconductor.scm (r-dirichletmultinomial): Update to 1.36.0.
2021-11-07 22:34:38 +00:00
Ricardo Wurmus
cb87707987
gnu: r-dexseq: Update to 1.40.0.
* gnu/packages/bioconductor.scm (r-dexseq): Update to 1.40.0.
2021-11-07 22:34:38 +00:00
Ricardo Wurmus
87db919dbb
gnu: r-deseq2: Update to 1.34.0.
* gnu/packages/bioconductor.scm (r-deseq2): Update to 1.34.0.
2021-11-07 22:34:38 +00:00