Commit Graph

4602 Commits

Author SHA1 Message Date
Björn Höfling
356a79becc
swh: Fix API call for getting origin.
When using the archival linter, git origins already in the archive where
not recognized due to an API change and where repeatedly asked for archival.
This is fixed here.

* guix/swh.scm (lookup-origin): Fix API URI for getting origin.
(<origin>): Fix comment with API URI example.
2019-12-17 23:29:32 +01:00
Ricardo Wurmus
f431d5e299
guix: Upgrade to Bioconductor 3.10.
* guix/build-system/r.scm (bioconductor-uri): Switch to version 3.10.
* guix/import/cran.scm (%bioconductor-version): Same.
2019-12-15 15:38:51 +01:00
Ludovic Courtès
5f9cd63eb0
base64: Do not use (rnrs).
* guix/base64.scm: Remove #:use-module clauses for (rnrs) and (srfi
srfi-13).  Add other #:use-module clauses.
(fxbit-field): Define as an alias for 'bit-field.
(fx=?, fx+, mod): New aliases.
(assert): New macro.
2019-12-15 00:34:05 +01:00
Ludovic Courtès
428561aa63
challenge: Fix type mismatch when comparing to a local hash.
* guix/scripts/challenge.scm (call-with-mismatches)[narinfo1]: When
LOCAL-HASH is true, call 'narinfo-hash->sha256' and use 'bytevector=?'
instead of 'string=?'.
2019-12-15 00:34:05 +01:00
Ricardo Wurmus
e31ec53ed8
import: cran: Recognize LGPL 2.1+.
* guix/import/cran.scm (string->license): Add case for lgpl2.1+.
2019-12-14 13:35:58 +01:00
Ludovic Courtès
6212146f88
import: utils: Update docstring of 'recursive-import'.
This is a followup to 70a8e13277.

* guix/import/utils.scm (recursive-import): Update docstring.
2019-12-13 18:04:04 +01:00
Maxim Cournoyer
e34e02707d
emacs-build-system: Ensure the core libraries appear last in the load path.
Fixes bug #38568 (see: https://bugs.gnu.org/38568).

* guix/build/emacs-build-system.scm (add-source-to-load-path): Ensure the core
libraries appear last in the load path.

Reported-by: Jelle Licht <jlicht@fsfe.org>
2019-12-13 10:48:28 +09:00
Ludovic Courtès
828a39da68
challenge: Support "--diff=diffoscope".
* guix/scripts/challenge.scm (call-with-nar): New procedure.
(narinfo-contents): Express in terms of 'call-with-nar'.
(call-with-mismatches, report-differing-files/external): New
procedures.
(%diffoscope-command): New variable.
(%options): Support "diffoscope" and a string starting with "/".
* tests/challenge.scm (call-mismatch-test): New procedure.
("differing-files"): Rewrite in terms of 'call-mismatch-test'.
("call-with-mismatches"): New test.
* doc/guix.texi (Invoking guix challenge): Document it.
2019-12-12 17:56:58 +01:00
Ludovic Courtès
5208db3a52
challenge: Add "--diff".
* guix/scripts/challenge.scm (dump-port*): New variable.
(archive-contents, store-item-contents, narinfo-contents)
(differing-files, report-differing-files): New procedures.
(summarize-report): Add #:report-differences and call it.
(show-help, %options): Add "--diff".
(%default-options): Add 'difference-report' key.
(report-differing-files): Parameterize CURRENT-TERMINAL-COLUMNS and pass
 #:report-differences to 'summarize-report'.
* guix/tests/http.scm (%local-url): Add optional argument.
(call-with-http-server): Fix docstring typo.
* tests/challenge.scm (query-path-size, make-narinfo): New procedures.
("differing-files"): New test.
* doc/guix.texi (Invoking guix challenge): Document "--diff".
2019-12-12 17:56:58 +01:00
Ludovic Courtès
22f06a2128
progress: Add 'progress-report-port'.
* guix/scripts/substitute.scm (progress-report-port): Move to...
* guix/progress.scm (progress-report-port): ... here.  New procedure.
2019-12-12 17:56:58 +01:00
Ludovic Courtès
1d9a4456a8
serialization: Remove unused procedure.
* guix/serialization.scm (write-contents): Remove.
2019-12-12 17:56:58 +01:00
Ludovic Courtès
4736d06f78
challenge: Report the best narinfo URI.
* guix/scripts/substitute.scm (select-uri): Rename to...
(narinfo-best-uri): ... this, and make public.  Update callers.
* guix/scripts/challenge.scm (summarize-report): Use 'narinfo-best-uri'
instead of (first (narinfo-uris ...)).
2019-12-12 17:56:58 +01:00
Ludovic Courtès
044277f610
guix archive: Add '--list'.
* guix/scripts/archive.scm (show-help, %options): Add '--list'.
(list-contents): New procedure.
(guix-archive): Honor the '--list' option.
* tests/guix-archive.sh: Test it.
* doc/guix.texi (Invoking guix archive): Document it.
2019-12-12 17:56:58 +01:00
Ludovic Courtès
12c1afcdbd
serialization: Add 'fold-archive'.
* guix/serialization.scm (read-contents): Remove.
(read-file-type, fold-archive): New procedures.
(restore-file): Rewrite in terms of 'fold-archive'.
* tests/nar.scm ("write-file-tree + fold-archive")
("write-file-tree + fold-archive, flat file"): New tests.
2019-12-12 17:56:57 +01:00
Brice Waegeneire
263a267b75
import: crate: Better handle license expressions.
* guix/import/crate.scm (%dual-license-rx): Removed function.
(crate->guix-package): Handle most of the multi-licensing cases.
* tests/crate.scm (licenses): Add tests for some licenses.

Co-authored-by: Ludovic Courtès <ludo@gnu.org>
2019-12-11 12:13:03 +01:00
Ludovic Courtès
70a8e13277
import: utils: 'recursive-import' returns a list rather than a stream.
* guix/import/utils.scm (recursive-import): Remove 'list->stream' call.
* guix/scripts/import/cran.scm (guix-import-cran): Remove 'stream->list'
call.
* guix/scripts/import/crate.scm (guix-import-crate): Likewise.
* guix/scripts/import/elpa.scm (guix-import-elpa): Likewise.
* guix/scripts/import/gem.scm (guix-import-gem): Likewise.
* guix/scripts/import/hackage.scm (guix-import-hackage): Likewise.
* guix/scripts/import/opam.scm (guix-import-opam): Likewise.
* guix/scripts/import/pypi.scm (guix-import-pypi): Likewise.
* guix/scripts/import/stackage.scm (guix-import-stackage): Likewise.
* tests/gem.scm ("gem-recursive-import"): Likewise.
* tests/import-utils.scm ("recursive-import"): Likewise.

Co-authored-by: Brian Leung <bkleung89@gmail.com>
2019-12-11 12:13:03 +01:00
Ludovic Courtès
ddd5915900
import: utils: 'recursive-import' returns packages in topological order.
* guix/import/utils.scm (topological-sort): New procedure.
(recursive-import): Rewrite to use it.
* tests/import-utils.scm ("recursive-import"): New test.
* guix/import/cran.scm (cran->guix-package): Always return two values.
* guix/scripts/import/cran.scm (guix-import-cran): Remove 'reverse' call
on 'cran-recursive-import' result.
* guix/scripts/import/crate.scm (guix-import-crate): Likewise.
* guix/scripts/import/elpa.scm (guix-import-elpa): Likewise.
* guix/scripts/import/gem.scm (guix-import-gem): Likewise.
* guix/scripts/import/hackage.scm (guix-import-hackage): Likewise.
* guix/scripts/import/opam.scm (guix-import-opam): Likewise.
* guix/scripts/import/pypi.scm (guix-import-pypi): Likewise.
* guix/scripts/import/stackage.scm (guix-import-stackage): Likewise.
* tests/gem.scm ("gem-recursive-import"): Change the order of package
expressions accordingly.
2019-12-11 12:12:58 +01:00
Ludovic Courtès
c20ba18304
profiles: Use 'getpwuid' when $USER and $LOGNAME are undefined.
Reported by YOANN P <yoann_mac_donald@hotmail.com>.

* guix/profiles.scm (%profile-directory): Fall back to 'getpwuid' when
"USER" and "LOGNAME" are undefined.
2019-12-10 20:56:06 +01:00
Ludovic Courtès
dc995fcd5a
pack: Clarify the /bin/sh requirement for Singularity.
* guix/scripts/pack.scm (squashfs-image)[symlinks*]: New variable.
[build]: Use it instead of SYMLINKS.
(guix-pack): Emit a warning and a hint when "bash" and "bash-minimal"
are missing and PACK-FORMAT is 'squashfs.
* doc/guix.texi (Invoking guix pack): Document the /bin/sh requirement
for Singularity.
2019-12-10 20:56:05 +01:00
zimoun
7282f94967
lint: Add '--load-path' option.
* guix/scripts/lint.scm (%options): Add '--load-path' option.
* doc/guix.texi: Document it.
* tests/guix-lint.sh: Test it.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2019-12-08 23:14:03 +01:00
Maxim Cournoyer
add773c37a
emacs-build-system: Move the source directory to the start of EMACSLOADPATH.
Fixes issue #38479 (see: https://bugs.gnu.org/38479).

* guix/build/emacs-build-system.scm (add-source-to-load-path): Move the source
directory to the start of the EMACSLOADPATH environment variable.

Reported-by:  Diego Nicola Barbato <dnbarbato@posteo.de>
2019-12-08 11:58:08 +09:00
Maxim Cournoyer
d0105e7f29
emacs-build-system: Make the order of the phases more clear.
* guix/build/emacs-build-system.scm (%standard-phases): Re-arrange to explicit
the ordering of phases.
2019-12-08 11:58:08 +09:00
Hartmut Goebel
f69439dff4
build-system: qt: Fix output missing in wrapped variables.
* guix/build/qt-build-system .scm (handle-output): Use directory of
  output, not its name.
2019-12-07 20:48:38 +01:00
Guillaume Le Vaillant
0dc5c85638
file-systems: Add support for 'strict-atime' and 'lazy-time' flags.
* guix/build/syscalls.scm (MS_LAZYTIME): New variable.
* gnu/build/file-systems.scm (mount-flags->bit-mask): Add match rules for
  'strict-atime' and 'lazy-time'.
* doc/guix.texi (File Systems): Add 'strict-atime' and 'lazy-time' to the list
  of supported flags.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2019-12-07 01:00:24 +01:00
Ludovic Courtès
158032bd7d
guix system: Add "describe" action.
* guix/scripts/system.scm (show-help): Add "describe".
(process-command): Handle it.
(guix-system): Likewise.
* doc/guix.texi (Invoking guix system): Document it.
2019-12-07 00:59:57 +01:00
Ludovic Courtès
60f4564a63
guix system: "list-generations" displays provenance info.
* guix/scripts/pull.scm (channel-commit-hyperlink): Export.
* guix/scripts/system.scm (display-system-generation)
[display-channel]: New procedure.
Read the "provenance" file of GENERATION and display channel info and
the configuration file name when available.
2019-12-07 00:59:56 +01:00
Ludovic Courtès
b85836d306
guix system: Use 'provenance-service-type', add "--save-provenance".
* guix/scripts/system.scm (show-help, %options): Add "--save-provenance".
(process-action): Define 'save-provenance?' and 'transform'; call
'transform' on the OS.
* doc/guix.texi (Invoking guix system): Document it under 'reconfigure'.
(Service Reference): Mention that 'provenance-service-type' is
automatically added by 'reconfigure' & 'init'.
2019-12-07 00:59:56 +01:00
Ludovic Courtès
fcbe4f71ca
derivations: Add 'derivation-input-fold'.
* guix/derivations.scm (derivation-input-fold): New procedure.
(substitution-oracle)[closure]: Rewrite in terms of
'derivation-input-fold'.
* tests/derivations.scm ("derivation-input-fold"): New test.
2019-12-07 00:29:41 +01:00
Pierre Neidhardt
88f06fd015
gnu: Really move lisp libraries to lisp-xyz, uglify-js to javascript and stumpwm to wm.
* gnu/local.mk: Include lisp-xyz.scm.
* gnu/packages/lisp-xyz.scm: New file.
* gnu/packages/lisp.scm: Move all lisp libraries to lisp-xyz.scm, uglify-js to
  javascript.scm and stumpwm to wm.scm.
* gnu/packages/javascript.scm: Add uglify-js.
* gnu/packages/wm.scm: Add stumpwm.
* gnu/packages/bioinformatics.scm: Find uglify-js in javascript.scm.
* gnu/packages/machine-learning.scm: Depend on lisp-xyz.scm instead of lisp.scm.
* gnu/packages/web.scm: Find uglify-js in javascript.scm.
* gnu/packages/web-browsers.scm: Depend on lisp-xyz.scm instead of lisp.scm.
* guix/build-system/minify.scm (default-uglify-js): Find uglify-js in
  javascript module instead of lisp.
2019-12-05 16:23:06 +01:00
Tobias Geerinckx-Rice
d9544d91a6
Revert "gnu: Properly move lisp libraries to lisp-xyz, uglify-js to javascript and stumpwm to wm."
This reverts commit ac1ee30f4f, which
still breaks ‘guix pull’.
2019-12-05 15:38:52 +01:00
Efraim Flashner
73bd8ab669
Revert "build-system/linux-module: Accept a #:make-flags keyword."
I should've tested this better before pushing the commit.

This reverts commit fabd4900d8.
2019-12-05 15:37:39 +02:00
Pierre Neidhardt
ac1ee30f4f
gnu: Properly move lisp libraries to lisp-xyz, uglify-js to javascript and stumpwm to wm.
* gnu/local.mk: Include lisp-xyz.scm.
* gnu/packages/lisp-xyz.scm: New file.
* gnu/packages/lisp.scm: Move all lisp libraries to lisp-xyz.scm, uglify-js to
  javascript.scm and stumpwm to wm.scm.
* gnu/packages/javascript.scm: Add uglify-js.
* gnu/packages/wm.scm: Add stumpwm.
* gnu/packages/bioinformatics.scm: Find uglify-js in javascript.scm.
* gnu/packages/machine-learning.scm: Depend on lisp-xyz.scm instead of lisp.scm.
* gnu/packages/web.scm: Find uglify-js in javascript.scm.
* gnu/packages/web-browsers.scm: Depend on lisp-xyz.scm instead of lisp.scm.
* guix/build-system/minify.scm (default-uglify-js): Find uglify-js in
  javascript module instead of lisp.
2019-12-05 13:48:47 +01:00
Marius Bakke
33b59c1a3e
Merge branch 'staging' 2019-12-04 20:12:41 +01:00
Ludovic Courtès
2b8682841d
ssh: 'open-ssh-session' can be passed the expected host key.
* guix/ssh.scm (open-ssh-session): Add #:host-key parameter.
Pass #:knownhosts to 'make-session'.  When HOST-KEY is true, call
'authenticate-server*' instead of 'authenticate-server'.
2019-12-04 18:16:08 +01:00
Ludovic Courtès
f5c180180e
ssh: Always authenticate the server [security fix].
Until now, users of 'open-ssh-session', including "guix deploy" and
"GUIX_DAEMON_SOCKET=ssh://…" (but not "guix offload"), would not
authenticate the SSH server they're talking to.

* guix/ssh.scm (open-ssh-session): Call 'authenticate-server'.
2019-12-04 18:16:08 +01:00
Ludovic Courtès
114dcb429a
ssh: Add 'authenticate-server*' and use it for offloading.
* guix/scripts/offload.scm (host-key->type+key): Remove.
(open-ssh-session): Replace server authentication code with a call to
'authenticate-server*'.
* guix/ssh.scm (host-key->type+key, authenticate-server*): New
procedures.
2019-12-04 18:16:08 +01:00
Ludovic Courtès
a6492178bd
substitute: Remove unused procedure.
This became unused with commit
a9468b422b.

* guix/scripts/substitute.scm (assert-valid-signature): Remove.
2019-12-04 18:16:08 +01:00
Maxim Cournoyer
65a7dd2950
build: emacs-build-system: Unify the installation directory.
This change aims to reduce the length of the EMACSLOADPATH environment
variable, which was found to cause issues such as
<https://bugs.gnu.org/38309>.

It should also enable discovery of newly installed packages without refreshing
the session's EMACSLOADPATH of the user profile (e.g., when launching Emacs
from the desktop manager application launcher), as discussed in
<https://bugs.gnu.org/38309>.

* guix/build/emacs-build-system.scm (%legacy-install-suffix): Rename to...
(%install-dir): ...this.
(%install-suffix): Remove variable.
(build): Adjust installation target directory.
(patch-el-files): Likewise.
(install): Likewise.
(move-doc): Likewise.
(make-autoloads): Likewise.

Signed-off-by: Clément Lassieur <clement@lassieur.org>
2019-12-04 11:06:49 +01:00
Tobias Geerinckx-Rice
fabd4900d8
build-system/linux-module: Accept a #:make-flags keyword.
Fixes bug#37882.

* guix/build-system/linux-module.scm (linux-module-build): Accept a
MAKE-FLAGS argument.
<builder>: Pass it on.
2019-12-04 11:25:33 +02:00
Ludovic Courtès
c2b2c8e9e7
lint: archival: Gracefully handle network failures.
* guix/lint.scm (check-archival): Wrap re-throw in 'with-networking-fail-safe'.
2019-12-02 12:24:56 +01:00
Hartmut Goebel
b6d852ce6d
guix: Add the 'qt' build system.
* guix/build-system/qt.scm, guix/build/qt-build-system.scm: New files.
* Makefile.am (MODULES): Add them.
* doc/guix.texi (Buiild systems): Add the new build system.
2019-12-01 20:24:47 +01:00
Mathieu Othacehe
fcc4c6ae60
scripts: system: Add --target option.
* guix/scripts/system.scm (%options): Add target option,
(%default-options): ditto,
(process-action): Rename existing target variable to target-file and pass new
target variable to run-with-store procedure.
2019-12-01 16:51:40 +01:00
Ludovic Courtès
99c45877a9
gexp: 'local-file' properly resolves non-literal relative file names.
* guix/gexp.scm (local-file): Distinguish the case where FILE is a
literal string and when it's not.  Add a clause for when FILE is not a
literal string.
* tests/gexp.scm ("local-file, non-literal relative file name"): New test.
* doc/guix.texi (G-Expressions): Update accordingly.
2019-11-30 23:50:40 +01:00
Julien Lepiller
ba3ff730ca
guix: import: Fix importing dune project.
* guix/import/opam.scm: Detect dune projects from dependencies, then
filter dune from dependencies.
2019-11-30 15:50:51 +01:00
Julien Lepiller
c60d98d42d
guix: import: Fix opam importer.
* guix/import/opam.scm: Allow line breaks in strings.
2019-11-30 15:50:46 +01:00
Ludovic Courtès
3f8e890d91
ui: 'with-profile-lock' keeps going upon ENOLCK.
* guix/build/syscalls.scm (call-with-file-lock/no-wait): Really pass
ARGS to HANDLER.  Return #f when HANDLER is called.
* guix/ui.scm (profile-lock-handler): Emit a mere warning upon ENOLCK.
2019-11-29 15:54:20 +01:00
Ludovic Courtès
55e1dfa4dd
ui: Factorize 'with-profile-lock'.
* guix/ui.scm (profile-lock-handler, profile-lock-file): New
procedures.
(with-profile-lock): New macro.
* guix/scripts/package.scm (process-actions): Use 'with-profile-lock'
instead of 'with-file-lock/no-wait'.
* guix/scripts/pull.scm (guix-pull): Likewise.
2019-11-29 15:54:20 +01:00
Ludovic Courtès
2d6bd5edbc
pull, describe: Emit hyperlinks for commit identifiers.
* guix/scripts/pull.scm (%vcs-web-views): New variable.
(channel-commit-hyperlink): New procedure.
(display-news-entry): Add 'channel' parameter.  When
'supports-hyperlinks?' returns true, call 'channel-commit-hyperlink'.
(display-profile-content): Likewise, and define CHANNEL.
(display-channel-specific-news): Pass CHANNEL to 'display-news-entry'.
* guix/ui.scm (hyperlink): Make public.
2019-11-28 18:43:54 +01:00
Marius Bakke
34f849a945
Merge branch 'master' into staging 2019-11-28 16:47:01 +01:00
Ludovic Courtès
055f052574
ui: 'display-generation' emits a hyperlink for the generation.
* guix/ui.scm (supports-hyperlinks?): Make 'port' optional.
(display-generation): Use 'file-hyperlink' for the heading when
'supports-hyperlinks?' returns true.
2019-11-28 13:30:53 +01:00