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69154 Commits

Author SHA1 Message Date
Ricardo Wurmus
76ea5b92ed
gnu: r-stars: Update to 0.5-3. 
* gnu/packages/cran.scm (r-stars): Update to 0.5-3.
 2021-07-10 21:35:35 +02:00
Ricardo Wurmus
9e7cae489b
gnu: r-ragg: Update to 1.1.3. 
* gnu/packages/cran.scm (r-ragg): Update to 1.1.3.
 2021-07-10 21:35:35 +02:00
Ricardo Wurmus
fb034eee87
gnu: r-textshaping: Update to 0.3.5. 
* gnu/packages/cran.scm (r-textshaping): Update to 0.3.5.
 2021-07-10 21:35:35 +02:00
Ricardo Wurmus
494d72e956
gnu: r-mlr3misc: Update to 0.9.2. 
* gnu/packages/cran.scm (r-mlr3misc): Update to 0.9.2.
 2021-07-10 21:35:35 +02:00
Ricardo Wurmus
59355a551a
gnu: r-diversitree: Update to 0.9-16. 
* gnu/packages/cran.scm (r-diversitree): Update to 0.9-16.
 2021-07-10 21:35:34 +02:00
Ricardo Wurmus
53bff86803
gnu: r-slider: Update to 0.2.2. 
* gnu/packages/cran.scm (r-slider): Update to 0.2.2.
 2021-07-10 21:35:34 +02:00
Ricardo Wurmus
10bbb68d30
gnu: r-cpp11: Update to 0.3.1. 
* gnu/packages/cran.scm (r-cpp11): Update to 0.3.1.
 2021-07-10 21:35:34 +02:00
Ricardo Wurmus
933986d42f
gnu: r-spatstat: Update to 2.2-0. 
* gnu/packages/cran.scm (r-spatstat): Update to 2.2-0.
 2021-07-10 21:35:34 +02:00
Ricardo Wurmus
69eb17751b
gnu: r-spatstat-linnet: Update to 2.2-1. 
* gnu/packages/cran.scm (r-spatstat-linnet): Update to 2.2-1.
 2021-07-10 21:35:34 +02:00
Ricardo Wurmus
86b4c08fd7
gnu: r-spatstat-core: Update to 2.2-0. 
* gnu/packages/cran.scm (r-spatstat-core): Update to 2.2-0.
 2021-07-10 21:35:34 +02:00
Ricardo Wurmus
b29b3b4bc8
gnu: r-spatstat-geom: Update to 2.2-0. 
* gnu/packages/cran.scm (r-spatstat-geom): Update to 2.2-0.
 2021-07-10 21:35:34 +02:00
Ricardo Wurmus
de77e21eed
gnu: r-spatstat-utils: Update to 2.2-0. 
* gnu/packages/cran.scm (r-spatstat-utils): Update to 2.2-0.
 2021-07-10 21:35:34 +02:00
Ricardo Wurmus
c13d544d67
gnu: r-rismed: Update to 2.3.0. 
* gnu/packages/cran.scm (r-rismed): Update to 2.3.0.
[propagated-inputs]: Add r-httr and r-xml2.
 2021-07-10 21:35:34 +02:00
Ricardo Wurmus
8afab27a97
gnu: r-optimx: Update to 2021-6.12. 
* gnu/packages/cran.scm (r-optimx): Update to 2021-6.12.
 2021-07-10 21:35:34 +02:00
Ricardo Wurmus
43d1119db9
gnu: r-zvcv: Update to 2.1.1. 
* gnu/packages/cran.scm (r-zvcv): Update to 2.1.1.
 2021-07-10 21:35:34 +02:00
Ricardo Wurmus
91bb4f5228
gnu: r-tam: Update to 3.7-16. 
* gnu/packages/cran.scm (r-tam): Update to 3.7-16.
 2021-07-10 21:35:34 +02:00
Ricardo Wurmus
6f9530ca13
gnu: r-openmx: Update to 2.19.6. 
* gnu/packages/cran.scm (r-openmx): Update to 2.19.6.
[propagated-inputs]: Add r-rcppparallel.
 2021-07-10 21:35:34 +02:00
Ricardo Wurmus
85c613434c
gnu: r-regsem: Update to 1.8.0. 
* gnu/packages/cran.scm (r-regsem): Update to 1.8.0.
 2021-07-10 21:35:33 +02:00
Ricardo Wurmus
7668566ed6
gnu: r-semtools: Update to 0.5-5. 
* gnu/packages/cran.scm (r-semtools): Update to 0.5-5.
[propagated-inputs]: Add r-pbivnorm.
 2021-07-10 21:35:33 +02:00
Ricardo Wurmus
026bd0b219
gnu: r-matrixcalc: Update to 1.0-4. 
* gnu/packages/cran.scm (r-matrixcalc): Update to 1.0-4.
 2021-07-10 21:35:33 +02:00
Ricardo Wurmus
ed5f29921d
gnu: r-icge: Update to 0.4.1. 
* gnu/packages/cran.scm (r-icge): Update to 0.4.1.
[propagated-inputs]: Add r-fastcluster.
 2021-07-10 21:35:33 +02:00
Ricardo Wurmus
f1d6a1fe0f
gnu: r-imager: Update to 0.42.10. 
* gnu/packages/cran.scm (r-imager): Update to 0.42.10.
 2021-07-10 21:35:33 +02:00
Ricardo Wurmus
0e6f5ab3c8
gnu: r-accept: Update to 0.8.3. 
* gnu/packages/cran.scm (r-accept): Update to 0.8.3.
[propagated-inputs]: Remove r-extrafont, r-mass, r-plotly, r-stringr, and r-viridis; add
r-reldist.
 2021-07-10 21:35:33 +02:00
Ricardo Wurmus
04a02f607f
gnu: r-terra: Update to 1.3-4. 
* gnu/packages/cran.scm (r-terra): Update to 1.3-4.
 2021-07-10 21:35:33 +02:00
Ricardo Wurmus
1d101e2c17
gnu: r-ggfortify: Update to 0.4.12. 
* gnu/packages/cran.scm (r-ggfortify): Update to 0.4.12.
 2021-07-10 21:35:33 +02:00
Ricardo Wurmus
74497e3d59
gnu: r-arsenal: Update to 3.6.3. 
* gnu/packages/cran.scm (r-arsenal): Update to 3.6.3.
 2021-07-10 21:35:33 +02:00
Ricardo Wurmus
213aa55c49
gnu: r-sf: Update to 1.0-1. 
* gnu/packages/cran.scm (r-sf): Update to 1.0-1.
[propagated-inputs]: Add r-s2.
 2021-07-10 21:35:33 +02:00
Ricardo Wurmus
14ace84ceb
gnu: r-spdata: Update to 0.3.10. 
* gnu/packages/cran.scm (r-spdata): Update to 0.3.10.
 2021-07-10 21:35:33 +02:00
Ricardo Wurmus
816697dcde
gnu: r-units: Update to 0.7-2. 
* gnu/packages/cran.scm (r-units): Update to 0.7-2.
 2021-07-10 21:35:33 +02:00
Ricardo Wurmus
8d77bafedf
gnu: r-seqinr: Update to 4.2-8. 
* gnu/packages/cran.scm (r-seqinr): Update to 4.2-8.
 2021-07-10 21:35:33 +02:00
Ricardo Wurmus
d984f2bdca
gnu: r-lavaan: Update to 0.6-9. 
* gnu/packages/cran.scm (r-lavaan): Update to 0.6-9.
 2021-07-10 21:35:33 +02:00
Ricardo Wurmus
ad6c16a265
gnu: r-parallelly: Update to 1.26.1. 
* gnu/packages/cran.scm (r-parallelly): Update to 1.26.1.
 2021-07-10 21:35:32 +02:00
Ricardo Wurmus
61d12816e0
gnu: r-huge: Update to 1.3.5. 
* gnu/packages/cran.scm (r-huge): Update to 1.3.5.
 2021-07-10 21:35:32 +02:00
Ricardo Wurmus
fd8fa3e3f2
gnu: r-fields: Update to 12.5. 
* gnu/packages/cran.scm (r-fields): Update to 12.5.
 2021-07-10 21:35:32 +02:00
Ricardo Wurmus
7f60a75890
gnu: r-spam: Update to 2.7-0. 
* gnu/packages/cran.scm (r-spam): Update to 2.7-0.
 2021-07-10 21:35:32 +02:00
Ricardo Wurmus
7bd52c907d
gnu: r-gargle: Update to 1.2.0. 
* gnu/packages/cran.scm (r-gargle): Update to 1.2.0.
 2021-07-10 21:35:32 +02:00
Ricardo Wurmus
09455e411b
gnu: r-ks: Update to 1.13.2. 
* gnu/packages/cran.scm (r-ks): Update to 1.13.2.
 2021-07-10 21:35:32 +02:00
Ricardo Wurmus
01bb26a35f
gnu: r-multicool: Update to 0.1-12. 
* gnu/packages/cran.scm (r-multicool): Update to 0.1-12.
 2021-07-10 21:35:32 +02:00
Ricardo Wurmus
4c472f2d4e
gnu: r-biocmanager: Update to 1.30.16. 
* gnu/packages/cran.scm (r-biocmanager): Update to 1.30.16.
 2021-07-10 21:35:32 +02:00
Ricardo Wurmus
ac11238206
gnu: r-weights: Update to 1.0.4. 
* gnu/packages/cran.scm (r-weights): Update to 1.0.4.
 2021-07-10 21:35:32 +02:00
Ricardo Wurmus
92fba40999
gnu: r-rcppgsl: Update to 0.3.9. 
* gnu/packages/cran.scm (r-rcppgsl): Update to 0.3.9.
 2021-07-10 21:35:32 +02:00
Ricardo Wurmus
7be666db46
gnu: r-pander: Update to 0.6.4. 
* gnu/packages/cran.scm (r-pander): Update to 0.6.4.
[native-inputs]: Add r-knitr.
 2021-07-10 21:35:32 +02:00
Ricardo Wurmus
ba4caa13e9
gnu: r-remotes: Update to 2.4.0. 
* gnu/packages/cran.scm (r-remotes): Update to 2.4.0.
 2021-07-10 21:35:32 +02:00
Ricardo Wurmus
0a23437a54
gnu: r-gert: Update to 1.3.1. 
* gnu/packages/cran.scm (r-gert): Update to 1.3.1.
 2021-07-10 21:35:32 +02:00
Ricardo Wurmus
3166bc2408
gnu: r-glmmtmb: Update to 1.1.1. 
* gnu/packages/cran.scm (r-glmmtmb): Update to 1.1.1.
[propagated-inputs]: Add r-numderiv.
 2021-07-10 21:35:32 +02:00
Ricardo Wurmus
0864d8fa6e
gnu: r-bayesplot: Update to 1.8.1. 
* gnu/packages/cran.scm (r-bayesplot): Update to 1.8.1.
 2021-07-10 21:35:31 +02:00
Ricardo Wurmus
00f9a72541
gnu: r-emmeans: Update to 1.6.2-1. 
* gnu/packages/cran.scm (r-emmeans): Update to 1.6.2-1.
 2021-07-10 21:35:31 +02:00
Ricardo Wurmus
8f7ee20c8a
gnu: r-furrr: Update to 0.2.3. 
* gnu/packages/cran.scm (r-furrr): Update to 0.2.3.
 2021-07-10 21:35:31 +02:00
Ricardo Wurmus
1a06214393
gnu: r-raster: Update to 3.4-13. 
* gnu/packages/cran.scm (r-raster): Update to 3.4-13.
 2021-07-10 21:35:31 +02:00
Ricardo Wurmus
603f174555
gnu: r-rootsolve: Update to 1.8.2.2. 
* gnu/packages/cran.scm (r-rootsolve): Update to 1.8.2.2.
 2021-07-10 21:35:31 +02:00
Ricardo Wurmus
666795c501
gnu: r-insight: Update to 0.14.2. 
* gnu/packages/cran.scm (r-insight): Update to 0.14.2.
 2021-07-10 21:35:31 +02:00
Ricardo Wurmus
350355e977
gnu: r-rbibutils: Update to 2.2.1. 
* gnu/packages/cran.scm (r-rbibutils): Update to 2.2.1.
 2021-07-10 21:35:31 +02:00
Ricardo Wurmus
8eb8537ff9
gnu: r-ggsignif: Update to 0.6.2. 
* gnu/packages/cran.scm (r-ggsignif): Update to 0.6.2.
 2021-07-10 21:35:31 +02:00
Ricardo Wurmus
eaae566287
gnu: r-rio: Update to 0.5.27. 
* gnu/packages/cran.scm (r-rio): Update to 0.5.27.
 2021-07-10 21:35:31 +02:00
Ricardo Wurmus
f5a92fff5b
gnu: r-openxlsx: Update to 4.2.4. 
* gnu/packages/cran.scm (r-openxlsx): Update to 4.2.4.
 2021-07-10 21:35:31 +02:00
Ricardo Wurmus
fb17d9004d
gnu: r-np: Update to 0.60-11. 
* gnu/packages/cran.scm (r-np): Update to 0.60-11.
 2021-07-10 21:35:31 +02:00
Ricardo Wurmus
2543c36d6f
gnu: r-statnet-common: Update to 4.5.0. 
* gnu/packages/cran.scm (r-statnet-common): Update to 4.5.0.
[propagated-inputs]: Remove r-rle.
 2021-07-10 21:35:31 +02:00
Ricardo Wurmus
8ebfd52a36
gnu: r-network: Update to 1.17.1. 
* gnu/packages/cran.scm (r-network): Update to 1.17.1.
[propagated-inputs]: Add r-statnet-common.
 2021-07-10 21:35:31 +02:00
Ricardo Wurmus
d5745aa8ec
gnu: r-tinytest: Update to 1.3.1. 
* gnu/packages/cran.scm (r-tinytest): Update to 1.3.1.
 2021-07-10 21:35:30 +02:00
Ricardo Wurmus
5ca69fbbf9
gnu: r-xfun: Update to 0.24. 
* gnu/packages/cran.scm (r-xfun): Update to 0.24.
 2021-07-10 21:35:30 +02:00
Ricardo Wurmus
ca62c0720c
gnu: r-seriation: Update to 1.3.0. 
* gnu/packages/cran.scm (r-seriation): Update to 1.3.0.
[propagated-inputs]: Remove r-dendextend and r-gplots.
 2021-07-10 21:35:30 +02:00
Ricardo Wurmus
e3f0e6b937
gnu: r-cli: Update to 3.0.0. 
* gnu/packages/cran.scm (r-cli): Update to 3.0.0.
 2021-07-10 21:35:30 +02:00
Ricardo Wurmus
faa618a65e
gnu: r-corrplot: Update to 0.90. 
* gnu/packages/cran.scm (r-corrplot): Update to 0.90.
 2021-07-10 21:35:30 +02:00
Ricardo Wurmus
c71508a41e
gnu: r-broom: Update to 0.7.8. 
* gnu/packages/cran.scm (r-broom): Update to 0.7.8.
 2021-07-10 21:35:30 +02:00
Ricardo Wurmus
da8acbb9e0
gnu: r-psych: Update to 2.1.6. 
* gnu/packages/cran.scm (r-psych): Update to 2.1.6.
 2021-07-10 21:35:30 +02:00
Ricardo Wurmus
ee927e952f
gnu: r-rmysql: Update to 0.10.22. 
* gnu/packages/cran.scm (r-rmysql): Update to 0.10.22.
 2021-07-10 21:35:30 +02:00
Ricardo Wurmus
ce5e71e820
gnu: r-proxy: Update to 0.4-26. 
* gnu/packages/cran.scm (r-proxy): Update to 0.4-26.
 2021-07-10 21:35:30 +02:00
Ricardo Wurmus
c8fcf4d8de
gnu: r-ggally: Update to 2.1.2. 
* gnu/packages/cran.scm (r-ggally): Update to 2.1.2.
 2021-07-10 21:35:30 +02:00
Ricardo Wurmus
0d847b49a9
gnu: r-circlize: Update to 0.4.13. 
* gnu/packages/cran.scm (r-circlize): Update to 0.4.13.
 2021-07-10 21:35:30 +02:00
Ricardo Wurmus
abb371b6a0
gnu: r-rcpp: Update to 1.0.7. 
* gnu/packages/cran.scm (r-rcpp): Update to 1.0.7.
 2021-07-10 21:35:30 +02:00
Ricardo Wurmus
e62ed5eabb
gnu: r-colorspace: Update to 2.0-2. 
* gnu/packages/cran.scm (r-colorspace): Update to 2.0-2.
 2021-07-10 21:35:30 +02:00
Ricardo Wurmus
87de49a2b4
gnu: r-curl: Update to 4.3.2. 
* gnu/packages/cran.scm (r-curl): Update to 4.3.2.
 2021-07-10 21:35:30 +02:00
Ricardo Wurmus
3293074c51
gnu: r-ggpmisc: Update to 0.4.0. 
* gnu/packages/cran.scm (r-ggpmisc): Update to 0.4.0.
[propagated-inputs]: Remove r-magrittr; add r-ggpp and r-quantreg.
 2021-07-10 21:35:29 +02:00
Ricardo Wurmus
8c5561396f
gnu: r-rticles: Update to 0.20. 
* gnu/packages/cran.scm (r-rticles): Update to 0.20.
 2021-07-10 21:35:29 +02:00
Ricardo Wurmus
95aec55c4a
gnu: r-googledrive: Update to 2.0.0. 
* gnu/packages/cran.scm (r-googledrive): Update to 2.0.0.
[propagated-inputs]: Remove r-curl; add r-cli, r-lifecycle, r-pillar, r-vctrs, and r-withr.
 2021-07-10 21:35:29 +02:00
Ricardo Wurmus
4140b66837
gnu: r-gviz: Update to 1.36.2. 
* gnu/packages/bioconductor.scm (r-gviz): Update to 1.36.2.
 2021-07-10 21:35:29 +02:00
Ricardo Wurmus
564142d25e
gnu: r-catalyst: Update to 1.16.1. 
* gnu/packages/bioconductor.scm (r-catalyst): Update to 1.16.1.
 2021-07-10 21:35:29 +02:00
Ricardo Wurmus
c4ffceb0c2
gnu: r-rhdf5lib: Update to 1.14.2. 
* gnu/packages/bioconductor.scm (r-rhdf5lib): Update to 1.14.2.
 2021-07-10 21:35:29 +02:00
Ricardo Wurmus
e957d6c93b
gnu: r-bioconcotk: Update to 1.12.1. 
* gnu/packages/bioconductor.scm (r-bioconcotk): Update to 1.12.1.
 2021-07-10 21:35:29 +02:00
Ricardo Wurmus
1cbcf54204
gnu: r-biocstyle: Update to 2.20.2. 
* gnu/packages/bioconductor.scm (r-biocstyle): Update to 2.20.2.
 2021-07-10 21:35:29 +02:00
Ricardo Wurmus
23abd7b6b6
gnu: r-mixomics: Update to 6.16.1. 
* gnu/packages/bioconductor.scm (r-mixomics): Update to 6.16.1.
 2021-07-10 21:35:29 +02:00
Ricardo Wurmus
3d539883ca
gnu: r-rsubread: Update to 2.6.3. 
* gnu/packages/bioconductor.scm (r-rsubread): Update to 2.6.3.
 2021-07-10 21:35:29 +02:00
Ricardo Wurmus
a94d1e3b4c
gnu: r-annaffy: Update to 1.64.2. 
* gnu/packages/bioconductor.scm (r-annaffy): Update to 1.64.2.
 2021-07-10 21:35:29 +02:00
Ricardo Wurmus
344c901a4c
gnu: r-clusterprofiler: Update to 4.0.2. 
* gnu/packages/bioconductor.scm (r-clusterprofiler): Update to 4.0.2.
 2021-07-10 21:35:29 +02:00
Ricardo Wurmus
a5e6826020
gnu: r-enrichplot: Update to 1.12.2. 
* gnu/packages/bioconductor.scm (r-enrichplot): Update to 1.12.2.
 2021-07-10 21:35:29 +02:00
Ricardo Wurmus
209642912d
gnu: r-dose: Update to 3.18.1. 
* gnu/packages/bioconductor.scm (r-dose): Update to 3.18.1.
 2021-07-10 21:35:29 +02:00
Ricardo Wurmus
072533f579
gnu: r-diffbind: Update to 3.2.4. 
* gnu/packages/bioconductor.scm (r-diffbind): Update to 3.2.4.
 2021-07-10 21:35:28 +02:00
Ricardo Wurmus
9496f34e23
gnu: r-systempiper: Update to 1.26.3. 
* gnu/packages/bioconductor.scm (r-systempiper): Update to 1.26.3.
[propagated-inputs]: Add r-crayon and r-s4vectors.
 2021-07-10 21:35:28 +02:00
Ricardo Wurmus
ea52ad7d4f
gnu: r-mzr: Update to 2.26.1. 
* gnu/packages/bioconductor.scm (r-mzr): Update to 2.26.1.
 2021-07-10 21:35:28 +02:00
Ricardo Wurmus
8936e45327
gnu: r-limma: Update to 3.48.1. 
* gnu/packages/bioconductor.scm (r-limma): Update to 3.48.1.
 2021-07-10 21:35:28 +02:00
Ricardo Wurmus
dfe8e5cca6
gnu: r-genomeinfodb: Update to 1.28.1. 
* gnu/packages/bioconductor.scm (r-genomeinfodb): Update to 1.28.1.
 2021-07-10 21:35:28 +02:00
Ricardo Wurmus
fd00ed8ff8
gnu: r-ensembldb: Update to 2.16.2. 
* gnu/packages/bioconductor.scm (r-ensembldb): Update to 2.16.2.
 2021-07-10 21:35:28 +02:00
Ricardo Wurmus
3c60e8d5e5
gnu: r-edaseq: Update to 2.26.1. 
* gnu/packages/bioconductor.scm (r-edaseq): Update to 2.26.1.
 2021-07-10 21:35:28 +02:00
Ricardo Wurmus
f8d7d07679
gnu: r-biocparallel: Update to 1.26.1. 
* gnu/packages/bioconductor.scm (r-biocparallel): Update to 1.26.1.
 2021-07-10 21:35:28 +02:00
Ricardo Wurmus
03c9d86432
gnu: r-biomart: Update to 2.48.2. 
* gnu/packages/bioconductor.scm (r-biomart): Update to 2.48.2.
 2021-07-10 21:35:28 +02:00
Ricardo Wurmus
74bfaf92db
gnu: r-annotationhub: Update to 3.0.1. 
* gnu/packages/bioconductor.scm (r-annotationhub): Update to 3.0.1.
 2021-07-10 21:35:28 +02:00
Ricardo Wurmus
bc85faf9a2
gnu: Add r-ggpp. 
* gnu/packages/cran.scm (r-ggpp): New variable.
 2021-07-10 21:35:28 +02:00
Ricardo Wurmus
48abef355d
gnu: Add r-s2. 
* gnu/packages/cran.scm (r-s2): New variable.
 2021-07-10 21:35:28 +02:00
Ricardo Wurmus
9a3f66ee7b
gnu: Add r-wk. 
* gnu/packages/cran.scm (r-wk): New variable.
 2021-07-10 21:35:28 +02:00
Ricardo Wurmus
39e1bc5b02
gnu: Add r-reldist. 
* gnu/packages/cran.scm (r-reldist): New variable.
 2021-07-10 21:35:28 +02:00
Ricardo Wurmus
c0e4357043
gnu: r-gtools: Update to 3.9.2. 
* gnu/packages/statistics.scm (r-gtools): Update to 3.9.2.
[arguments]: Remove.
 2021-07-10 21:35:27 +02:00
Ricardo Wurmus
ce84ba5bd7
gnu: r-vdiffr: Update to 1.0.2. 
* gnu/packages/cran.scm (r-vdiffr): Update to 1.0.2.
[source]: Remove snippet.
[arguments]: Remove.
[inputs]: Remove freetype and harfbuzz; add libpng and zlib.
[propagated-inputs]: Remove r-bh, r-devtools, r-fontquiver,
r-freetypeharfbuzz, r-gdtools, r-htmlwidgets, r-purrr, r-r6, r-rcpp, r-shiny,
and r-usethis; add r-cpp11 and r-lifecycle.
[native-inputs]: Remove esbuild and js-jquery.
 2021-07-10 21:35:27 +02:00
Ricardo Wurmus
94be433332
gnu: r-rintrojs: Update to 0.3.0. 
* gnu/packages/cran.scm (r-rintrojs): Update to 0.3.0.
[source]: Delete minified JavaScript in snippet.
[arguments]: Minify with esbuild.
[native-inputs]: Replace uglify-js with esbuild; update intro.js to 3.2.1.
[license]: Add license of intro.js.
 2021-07-10 21:35:24 +02:00
Timotej Lazar
5c45ed059c
gnu: qpdfview: Use qt-build-system. 
This fixes compilation after the recent reorganization of qt-build-system. As
a side effect, specifying Qt plugins with environment variables now works.

* gnu/packages/pdf.scm (qpdfview)[build-system]: Use qt-build-system.
[arguments]: Drop #:modules and #:imported-modules, and the 'qt-wrap
phase. Specify that there are no tests.

Signed-off-by: Leo Famulari <leo@famulari.name>
 2021-07-10 14:17:49 -04:00
Pierre Neidhardt
45fdb03500
gnu: sbcl-generic-cl: Update to 0.9. 
* gnu/packages/lisp-xyz.scm (sbcl-generic-cl): Update to 0.9.
 2021-07-10 17:07:17 +02:00
Pierre Neidhardt
e1b53728cc
gnu: Add cl-form-types. 
* gnu/packages/lisp-xyz.scm (cl-form-types, ecl-cl-form-types,
sbcl-cl-form-types): New variables.
 2021-07-10 17:07:17 +02:00
Ivan Gankevich
c21ccbf14e
gnu: Add ocaml-bibtex2html. 
* gnu/packages/ocaml.scm (ocaml-bibtex2html): New variable.

Signed-off-by: Julien Lepiller <julien@lepiller.eu>
 2021-07-10 15:02:12 +02:00
Julien Lepiller
f7f6cbb6b6
gnu: Add texlive-preprint. 
* gnu/packages/tex.scm (texlive-preprint): New variable.
 2021-07-10 15:01:59 +02:00
Ivan Gankevich
bfa0df0d61
gnu: hevea: Update to 2.35. 
* gnu/packages/ocaml.scm (hevea): Update to 2.35.

Signed-off-by: Julien Lepiller <julien@lepiller.eu>
 2021-07-10 15:01:31 +02:00
Pierre Neidhardt
4dc0337146
gnu: sbcl-cl-gserver: Update to 1.8.0. 
* gnu/packages/lisp-xyz.scm (sbcl-cl-gserver): Update to 1.8.0.
 2021-07-10 12:18:22 +02:00
Justin Veilleux
24ee1448e8
gnu: Add netdiscover. 
* gnu/packages/networking.scm (netdiscover): New variable.

Signed-off-by: Arun Isaac <arunisaac@systemreboot.net>
 2021-07-10 15:11:26 +05:30
Arun Isaac
4ac2e09051
gnu: go-github-com-golang-snappy: Update to 0.0.4. 
* gnu/packages/syncthing.scm (go-github-com-golang-snappy): Update to 0.0.4.
 2021-07-09 21:34:34 +05:30
Andrew Tropin
314beace60
gnu: emacs-dash: Update to 2.19.0. 
* gnu/packages/emacs-xyz.scm (emacs-dash): Update to 2.19.0.

Signed-off-by: Leo Prikler <leo.prikler@student.tugraz.at>
 2021-07-09 17:57:11 +02:00
Zhu Zihao
2086a6a335
gnu: emacs-telega: Fix 'patch-source' phase. 
* gnu/packages/emacs-xyz.scm (emacs-telega)[#:phases]<patch-sources>:
Add missing slash in ‘/bin’ when patching general commands.
Also patch telega-vvnote.el.

Signed-off-by: Leo Prikler <leo.prikler@student.tugraz.at>
 2021-07-09 17:57:10 +02:00
Leo Prikler
4236b8586d
gnu: emacs-xyz: Fix indentation. 
* gnu/packages/emacs-xyz.scm: Delete trailing newline.
(emacs-purescript-mode): Delete trailing space.
 2021-07-09 15:08:04 +02:00
Leo Prikler
55d8eca5e9
gnu: emacs-telega-server: Update to 0.7.025. 
* gnu/packages/emacs-xyz.scm (emacs-telega-server): Update to 0.7.025.
 2021-07-09 15:08:04 +02:00
Zhu Zihao
cd42e8001a
gnu: emacs-telega-contrib: Update to 0.7.024. 
* gnu/packages/emacs-xyz.scm(emacs-telega-contrib): Update to 0.7.024.
[arguments]<#:phases>: Back to root directory of build before phase
'install-license-files' to properly install licenses.
[propagated-inputs]: Add emacs-dashboard, emacs-transient.

Signed-off-by: Leo Prikler <leo.prikler@student.tugraz.at>
 2021-07-09 15:08:04 +02:00
Zhu Zihao
a303be7c3b
gnu: emacs-telega: Update to 0.7.024. 
* gnu/packages/emacs-xyz.scm (emacs-telega): Update to 0.7.024.
[build-system] Use emacs-build-system.
[arguments] Add #:emacs.
Drop outdated phases.
Update ‘patch-sources’ phase to find new occurences of ffmpeg to patch.
Add new ‘configure’ and ‘install-share-files’ phases.

Signed-off-by: Leo Prikler <leo.prikler@student.tugraz.at>
 2021-07-09 15:08:04 +02:00
Zhu Zihao
d0ccdd707d
gnu: Add emacs-telega-server. 
* gnu/packages/emacs-xyz.scm (emacs-telega-server): New variable.
* gnu/packages/patches/emacs-telega-path-placeholder.patch: New file.
* gnu/package/patches/emacs-telega-patch-server-functions.patch: Remove stale patch.
* gnu/local.mk (dist_patch_DATA): Update accordingly.

Signed-off-by: Leo Prikler <leo.prikler@student.tugraz.at>
 2021-07-09 15:08:04 +02:00
Ludovic Courtès
b182121458
gnu: python-arrow: Honor #:tests? in 'check' phase. 
* gnu/packages/time.scm (python-arrow)[arguments]: 'check' phase honors
 #:tests?.
 2021-07-09 11:58:52 +02:00
Kris Fremen
7ad7b07806
gnu: python-arrow: Update to 1.1.1. 
* gnu/packages/time.scm (python-arrow): Update to 1.1.1.
 2021-07-09 11:58:51 +02:00
Hugo Lecomte
af7708261f
gnu: Add repo2docker. 
* gnu/packages/jupyter.scm (repo2docker): New variable.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
 2021-07-09 11:58:51 +02:00
Hugo Lecomte
faa26f2342
gnu: Add python-pydata-sphinx-theme. 
* gnu/packages/sphinx.scm (python-pydata-sphinx-theme): New variable.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
 2021-07-09 11:58:51 +02:00
Hugo Lecomte
885c1bd06e
gnu: Add python-sphinxcontrib-autoprogram. 
* gnu/packages/sphinx.scm (python-sphinxcontrib-autoprogram): New variable.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
 2021-07-09 11:58:51 +02:00
Hugo Lecomte
d6b3908840
gnu: Add python-jupyter-sphinx. 
* gnu/packages/sphinx.scm (python-jupyter-sphinx): New variable.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
 2021-07-09 11:58:51 +02:00
Hugo Lecomte
e31979c3a5
gnu: Add python-pytest-regressions. 
* gnu/packages/check.scm (python-pytest-regressions): New variable.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
 2021-07-09 11:58:51 +02:00
Hugo Lecomte
778ae273e9
gnu: Add python-pytest-datadir. 
* gnu/packages/check.scm (python-pytest-datadir): New variable.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
 2021-07-09 11:58:51 +02:00
Hugo Lecomte
68a33f3d19
gnu: Add python-recommonmark. 
* gnu/packages/python-xyz.scm (python-recommonmark): New variable.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
 2021-07-09 11:58:50 +02:00
Hugo Lecomte
4204af9967
gnu: Add python-escapism. 
* gnu/packages/python-xyz.scm (python-escapism): New variable.

Co-authored-by: Ludovic Courtès <ludo@gnu.org>
 2021-07-09 11:58:50 +02:00
Ludovic Courtès
9bfc4a8187
gnu: python-seaborn: Update to 0.11.1. 
* gnu/packages/patches/python-seaborn-kde-test.patch: New file.
* gnu/local.mk (dist_patch_DATA): Add it.
* gnu/packages/python-xyz.scm (python-seaborn): Use it, and update to
0.11.1.
 2021-07-09 11:58:50 +02:00
Ludovic Courtès
3125255cc5
gnu: python-seaborn: Simplify 'start-xserver' phase. 
* gnu/packages/python-xyz.scm (python-seaborn)[arguments]: In
'start-xserver' phase, assume "Xvfb" is in $PATH.
 2021-07-09 11:58:50 +02:00
Ludovic Courtès
c7cfe54018
gnu: python-seaborn: 'check' phase honors #:tests?. 
* gnu/packages/python-xyz.scm (python-seaborn)[arguments]: Change
'check' phase to honor #:tests?.
 2021-07-09 11:58:50 +02:00
Tobias Geerinckx-Rice
ef3d60fc76
gnu: mergerfs-tools: Update to 0.0.0-3.3b6fe00. 
* gnu/packages/file-systems.scm (mergerfs-tools): Update to 0.0.0-3.3b6fe00.
 2021-07-09 04:30:45 +02:00
Tobias Geerinckx-Rice
7292585f3c
gnu: mergerfs: Clean up arguments. 
* gnu/packages/file-systems.scm (mergerfs)[arguments]: Remove some
incorrect comments & rewrite code accordingly.  Pass the PREFIX as a
make flag.
 2021-07-09 04:30:39 +02:00
Tobias Geerinckx-Rice
478104c398
gnu: mergerfs: Do not refer to the native bash. 
* gnu/packages/linux.scm (mergerfs)[inputs]: Add bash-minimal.
[arguments]: Refer to it rather than to the native build bash.
 2021-07-09 04:27:33 +02:00
Tobias Geerinckx-Rice
5f071925ef
gnu: mergerfs: Cross-compile. 
* gnu/packages/file-systems.scm (mergerfs)[arguments]: Use CC-FOR-TARGET
and CXX-FOR-TARGET.  Don't let the Makefile strip binaries.
 2021-07-09 04:26:45 +02:00
Tobias Geerinckx-Rice
73a2edf25b
gnu: mergerfs: Update to 2.32.6. 
* gnu/packages/file-systems.scm (mergerfs): Update to 2.32.6.
 2021-07-09 03:30:20 +02:00
Ivan Gankevich
e499500730
gnu: Add bibtool. 
* gnu/packages/tex.scm (bibtool): New variable.

Signed-off-by: Nicolas Goaziou <mail@nicolasgoaziou.fr>
 2021-07-09 00:22:05 +02:00
jgart via Guix-patches via
889c5c584f
gnu: clikan: Upgrade to 0.2.1. 
* gnu/packages/task-management.scm (clikan)[version]: Upgrade to
0.2.1.
[arguments]: Enable tests.
[inputs]: Add python-rich.

Signed-off-by: Nicolas Goaziou <mail@nicolasgoaziou.fr>
 2021-07-09 00:08:49 +02:00
Vinicius Monego
e01ae01e57
gnu: drawing: Update to 0.8.2. 
* gnu/packages/gnome.scm (drawing): Update to 0.8.2.

Signed-off-by: Nicolas Goaziou <mail@nicolasgoaziou.fr>
 2021-07-09 00:01:31 +02:00
Vinicius Monego
65c70b820b
gnu: lightspark: Update to 0.8.5. 
* gnu/packages/animation.scm (lightspark): Update to 0.8.5.

Signed-off-by: Nicolas Goaziou <mail@nicolasgoaziou.fr>
 2021-07-09 00:00:37 +02:00
Leo Famulari
000083c098
gnu: linux-libre 5.4: Update to 5.4.130. 
* gnu/packages/linux.scm (linux-libre-5.4-version): Update to 5.4.130.
(linux-libre-5.4-pristine-source): Update hash.
 2021-07-08 16:27:14 -04:00
Leo Famulari
6d625242a6
gnu: linux-libre 5.10: Update to 5.10.48. 
* gnu/packages/linux.scm (linux-libre-5.10-version): Update to 5.10.48.
(linux-libre-5.10-pristine-source): Update hash.
 2021-07-08 16:27:14 -04:00
Leo Famulari
d9b1cd8d28
gnu: linux-libre: Update to 5.12.15. 
* gnu/packages/linux.scm (linux-libre-5.12-version): Update to 5.12.15.
(linux-libre-5.12-pristine-source): Update hash.
 2021-07-08 16:27:13 -04:00
Leo Famulari
efdb07729c
gnu: python-shiboken-2: Update to 5.15.2. 
* gnu/packages/qt.scm (python-shiboken-2): Update to 5.15.2.
 2021-07-08 16:27:10 -04:00
Maxime Devos
f78a09f0c4
gnu: libolm: Respect "--without-tests". 
* gnu/packages/libolm.scm
  (libolm)[arguments]<#:phases>{check}: Respect #:tests?.

Signed-off-by: Mathieu Othacehe <othacehe@gnu.org>
 2021-07-08 21:20:17 +02:00
Maxime Devos
f78975c8e0
gnu: python-h2: Respect "--without-tests". 
* gnu/packages/python-web.scm
  (python-h2)[arguments]<#:phases>{check}: Respect #:tests?.

Signed-off-by: Mathieu Othacehe <othacehe@gnu.org>
 2021-07-08 21:20:13 +02:00
Maxime Devos
c46c8531dd
gnu: python-h11: Respect "--without-tests". 
* gnu/packages/python-web.scm
  (python-h11)[arguments]<#:phases>{check}: Respect #:tests?.

Signed-off-by: Mathieu Othacehe <othacehe@gnu.org>
 2021-07-08 21:20:09 +02:00
Maxime Devos
a6e70f3f0c
gnu: python-hpack: Respect "--without-tests". 
* gnu/packages/python-web.scm
  (python-hpack)[arguments]<#:phases>{check}: Respect #:tests?.

Signed-off-by: Mathieu Othacehe <othacehe@gnu.org>
 2021-07-08 21:20:05 +02:00
Maxime Devos
a5a90a98d8
gnu: python-hyperframe: Respect "--without-tests". 
* gnu/packages/python-web.scm
  (python-hyperframe)[arguments]<#:phases>{check}: Respect #:tests?.

Signed-off-by: Mathieu Othacehe <othacehe@gnu.org>
 2021-07-08 21:20:01 +02:00
Maxime Devos
d0b3bb9df7
gnu: python-watchgod: Respect "--without-tests". 
* gnu/packages/python-xyz.scm
  (python-watchgod)[arguments]<#:phases>{check}: Respect #:tests?.

Signed-off-by: Mathieu Othacehe <othacehe@gnu.org>
 2021-07-08 21:19:56 +02:00
Maxime Devos
3cd509bf66
gnu: python-pymediainfo: Respect "--without-tests". 
* gnu/packages/python-xyz.scm
  (python-pymediainfo)[arguments]<#:phases>{check}: Respect
  #:tests?.  Don't bother returning #t as it isn't required
  anymore.

Signed-off-by: Mathieu Othacehe <othacehe@gnu.org>
 2021-07-08 21:19:32 +02:00
Mathieu Othacehe
beaa5dff38
gnu: zile-on-guile: Fix build. 
This is a follow-up of da40d07066.

* gnu/packages/zile.scm (zile-on-guile)[arguments]: Restore the original
patch-/bin/sh phase.
 2021-07-08 17:12:26 +02:00
Vinicius Monego
57a747e15a
gnu: Add python-cmaes. 
* gnu/packages/machine-learning.scm (python-cmaes): New variable.

Signed-off-by: Mathieu Othacehe <othacehe@gnu.org>
 2021-07-08 16:49:06 +02:00
Maxime Devos
344316b455
gnu: xvfb-run: Fix ‘xvfb-run --help’ in a pure environment. 
* gnu/packages/xorg.scm (xvfb-run)[arguments]: Refer to ‘cat’
  by absolute file name, and test whether ‘xvfb-run --help’
  succeeds in a pure environment in the ‘check’ phase.

Signed-off-by: Mathieu Othacehe <othacehe@gnu.org>
 2021-07-08 16:40:29 +02:00
Matthew James Kraai
da40d07066
gnu: zile: Update to 2.6.2. 
* gnu/packages/zile.scm (zile): Update to 2.6.2.
[arguments]: Adjust file list in custom 'patch-/bin/sh phase.
[inputs]: Add gee and glib.

Signed-off-by: Mathieu Othacehe <othacehe@gnu.org>
 2021-07-08 16:22:49 +02:00
Nicolas Goaziou
2a1fde403d
gnu: emacs-chronometrist: Update to 0.9.0. 
* gnu/packages/emacs-xyz.scm (emacs-chronometrist): Update to 0.9.0.
[source]: Update upstream URL.
[inputs]: Add emacs-spark.  Remove emacs-anaphora and emacs-literate-elisp.
 2021-07-08 15:32:40 +02:00
Nicolas Goaziou
7705edf39b
gnu: python-pikepdf: Update to 2.14.2. 
* gnu/packages/python-xyz.scm (python-pikepdf): Update to 2.14.2.
 2021-07-08 15:10:45 +02:00
Nicolas Goaziou
95438b7a75
gnu: pinentry-bemenu: Fix license. 
* gnu/packages/gnupg.scm (pinentry-bemenu)[license]: Use GPL 3+.
 2021-07-08 15:07:42 +02:00
Nikita Domnitskii
8edb6778cf
gnu: Add pinentry-bemenu. 
* gnu/packages/gnupg.scm (pinentry-bemenu): New variable.

Signed-off-by: Nicolas Goaziou <mail@nicolasgoaziou.fr>
 2021-07-08 15:02:38 +02:00
Nikita Domnitskii
c111fa6067
gnu: bemenu: Update to 0.6.2. 
* gnu/packages/xdisorg.scm (bemenu): Update to 0.6.2.

Signed-off-by: Nicolas Goaziou <mail@nicolasgoaziou.fr>
 2021-07-08 15:00:29 +02:00
Efraim Flashner
94f772dad8
gnu: newsboat: Update to 2.24. 
* gnu/packages/syndication.scm (newsboat): Update to 2.24.
[arguments]: Update rust to 1.48.
[cargo-inputs]: Replace rust-cxx-0.5 with 1, rust-gettext-rs-0.6 with
0.7.
[cargo-development-inputs]: Replace rust-cxx-build-0.5 with 1.
 2021-07-08 10:55:30 +03:00
Efraim Flashner
f28f095fbd
gnu: rust-once-cell-1: Update to 1.8.0. 
* gnu/packages/crates-io.scm (rust-once-cell-1): Update to 1.8.0.
 2021-07-08 10:55:30 +03:00
Jan (janneke) Nieuwenhuizen
9bd65f0583
gnu: mcrl2: Update to 202106.0. 
* gnu/packages/maths.scm (mcrl2): Update to 202106.0.
 2021-07-08 09:51:12 +02:00
Matthew James Kraai
0a04c25482
mailmap: Update entries for Matthew James Kraai. 
* .mailmap: Change name for Matthew James Kraai.
* gnu/packages/lisp-xyz.scm, gnu/packages/python-xyz.scm,
gnu/packages/rust.scm: Likewise.

Signed-off-by: Nicolas Goaziou <mail@nicolasgoaziou.fr>
 2021-07-08 09:48:22 +02:00
John Kehayias
87c974cdd1
gnu: darktable: Update to 3.6.0. 
* gnu/packages/photo.scm (darktable): Update to 3.6.0.

Signed-off-by: Nicolas Goaziou <mail@nicolasgoaziou.fr>
 2021-07-08 09:44:10 +02:00
Andrew Tropin
9381f1fa4a
gnu: Add emacs-consult-notmuch. 
* gnu/packages/emacs-xyz.scm (emacs-consult-notmuch): New variable.

Signed-off-by: Nicolas Goaziou <mail@nicolasgoaziou.fr>
 2021-07-08 09:36:49 +02:00
Matthew James Kraai
08f03de158
gnu: emacs-deadgrep: Add missing input. 
* gnu/packages/emacs-xyz.scm (emacs-deadgrep)[inputs]: Add ripgrep.
[arguments]: Add configure phase to set deadgrep-executable to absolute path.

Signed-off-by: Nicolas Goaziou <mail@nicolasgoaziou.fr>
 2021-07-08 09:32:02 +02:00
Efraim Flashner
49e2e75ced
gnu: %guile-3.0-static-stripped: Rename to %guile-static-stripped. 
* gnu/packages/make-bootstrap.scm (%guile-3.0-static-stripped): Rename
to %guile-static-stripped.
(%guile-bootstrap-tarball): Adjust accordingly.
* gnu/system/linux-initrd.scm (expression->initrd): Use
%guile-static-stripped as default guile.
* doc/guix.texi (initial RAM disk)[expression->initrd]: Adjust
documentation accordingly.
 2021-07-08 09:39:05 +03:00
Efraim Flashner
e48cff0965
gnu: make-bootstrap: Use guile-3.0 bootstrap tarball. 
* gnu/packages/make-bootstrap.scm (%guile-bootstrap-tarball): Use
guile-3.0.
(%guile-static-stripped): Remove variable.
 2021-07-08 09:29:03 +03:00
Efraim Flashner
f819b46acb
gnu: make-bootstrap: Build with gcc-7. 
* gnu/packages/make-bootstrap.scm (gcc-for-bootstrap)[Inherit]: Inherit
from gcc-7.
[inputs]: Use package-inputs from gcc-7.
(package-with-relocatable-glibc)[native-inputs]: Have cross-gcc use
gcc-7.
(%gcc-static)[inherit]: Inherit from gcc-7.
[arguments]: Use package-arguments from gcc-7.
[inputs]: Replace isl-0.18 with isl. Use package-inputs from gcc-7.
[native-inputs]: Use package-native-inputs from gcc-7.
(%gcc-stripped)[inherit]: Inherit from gcc-7.
 2021-07-08 09:28:38 +03:00
Nicolas Goaziou
ac3444968a
gnu: python-pikepdf: Update to 2.14.1. 
* gnu/packages/python-xyz.scm (python-pikepdf): Update to 2.14.1.
 2021-07-08 00:03:17 +02:00
Nicolas Goaziou
1d4decf4a2
gnu: giac: Update to 1.7.0-17. 
* gnu/packages/algebra.scm (giac): Update to 1.7.0-17.
 2021-07-07 23:03:25 +02:00
Nicolas Goaziou
30c6b6ccb4
gnu: emacs-pyim: Update to 3.9.0. 
* gnu/packages/emacs-xyz.scm (emacs-pyim): Update to 3.9.0.
 2021-07-07 22:53:54 +02:00
Leo Famulari
99aecc0988
gnu: VTK 8: Re-fix a build failure with recent versions of freetype. 
* gnu/packages/patches/vtk-8-fix-freetypetools-build-failure.patch: New file.
* gnu/local.mk (dist_patch_DATA): Add it.
* gnu/packages/image-processing.scm (vtk-8): Dis-inherit from VTK. Use the
package definition that predated the update to VTK 9, taken from commit
f4dc8ac6df.
 2021-07-07 16:50:21 -04:00
Tobias Geerinckx-Rice
32480e1903
gnu: kicad-doc: Remove unnecessary code. 
* gnu/packages/engineering.scm (arguments): Skip #:tests? instead of
deleting the 'check phase.  Remove the 'set-perl-env phase.
 2021-07-07 21:26:55 +02:00
Tobias Geerinckx-Rice
dbf78e3985
gnu: kicad-doc: Fix build. 
Fixes <https://issues.guix.gnu.org/49458>.

* gnu/packages/engineering.scm (native-inputs): Add perl-yaml-tiny.
 2021-07-07 21:26:55 +02:00
Raghav Gururajan
b30651aeca
gnu: Add bitmask. 
* gnu/packages/vpn.scm (bitmask): New variable.

Co-authored-by: jgart <jgart@dismail.de>
 2021-07-07 09:41:22 -04:00
Raghav Gururajan
e6ea0abd93
gnu: Add go-0xacab-org-leap-shapeshifter. 
* gnu/packages/golang.scm (go-0xacab-org-leap-shapeshifter): New variable.
 2021-07-07 09:41:22 -04:00
Raghav Gururajan
2fa52c8a90
gnu: Add go-github-com-operatorfoundation-shapeshifter-transports. 
* gnu/packages/golang.scm (go-github-com-operatorfoundation-shapeshifter-transports): New variable.
 2021-07-07 09:41:22 -04:00
Raghav Gururajan
d28eacb011
gnu: Add go-github-com-kataras-golog. 
* gnu/packages/golang.scm (go-github-com-kataras-golog): New variable.
 2021-07-07 09:41:22 -04:00
Raghav Gururajan
56835ab730
gnu: Add go-github-com-kataras-pio. 
* gnu/packages/golang.scm (go-github-com-kataras-pio): New variable.
 2021-07-07 09:41:21 -04:00
Raghav Gururajan
62646d768d
gnu: Add go-github-com-shadowsocks-go-shadowsocks2. 
* gnu/packages/golang.scm (go-github-com-shadowsocks-go-shadowsocks2): New variable.
 2021-07-07 09:41:21 -04:00
Raghav Gururajan
e174191029
gnu: Add go-github-com-riobard-go-bloom. 
* gnu/packages/golang.scm (go-github-com-riobard-go-bloom): New variable.
 2021-07-07 09:41:21 -04:00
Raghav Gururajan
7b8e9af56c
gnu: Add go-github-com-aead-chacha20. 
* gnu/packages/golang.org (go-github-com-aead-chacha20): New variable.
 2021-07-07 09:41:21 -04:00
Raghav Gururajan
68bfec63c2
gnu: Add go-github-com-mufti1-interconv. 
* gnu/packages/golang.scm (go-github-com-mufti1-interconv): New variable.
 2021-07-07 09:41:21 -04:00
Raghav Gururajan
19f3b7c7b8
gnu: Add go-github-com-opentracing-opentracing-go. 
* gnu/packages/golang.scm (go-github-com-opentracing-opentracing-go): New variable.
 2021-07-07 09:41:21 -04:00
Raghav Gururajan
ead243bfb6
gnu: Add go-github-com-operatorfoundation-monolith-go. 
* gnu/packages/golang.scm (go-github-com-operatorfoundation-monolith-go): New variable.
 2021-07-07 09:41:20 -04:00
Raghav Gururajan
d1f4ace68e
gnu: Add go-github-com-deckarep-golang-set. 
* gnu/packages/golang.scm (go-github-com-deckarep-golang-set): New variable.
 2021-07-07 09:41:20 -04:00
Raghav Gururajan
314f505f2c
gnu: Add go-github-com-blanu-dust. 
* gnu/packages/golang.scm (go-github-com-blanu-dust): New variable.
 2021-07-07 09:41:20 -04:00
Raghav Gururajan
db8d15924c
gnu: Add go-github-com-op-go-logging. 
* gnu/packages/golang.scm (go-github-com-op-go-logging): New variable.
 2021-07-07 09:41:20 -04:00
Raghav Gururajan
084dcd2708
gnu: Add go-github-com-operatorfoundation-shapeshifter-ipc. 
* gnu/packages/golang.scm (go-github-com-operatorfoundation-shapeshifter-ipc): New variable.
 2021-07-07 09:41:20 -04:00
Raghav Gururajan
213570dbd3
gnu: Add go-github-com-operatorfoundation-obfs4. 
* gnu/packages/golang.scm (go-github-com-operatorfoundation-obfs4): New variable.
 2021-07-07 09:41:20 -04:00
Raghav Gururajan
fad3cce201
gnu: Add go-github-com-willscott-goturn. 
* gnu/packages/golang.scm (go-github-com-willscott-goturn): New variable.
 2021-07-07 09:41:20 -04:00
Raghav Gururajan
aa6df6d4e1
gnu: Add go-torproject-org-pluggable-transports-goptlib. 
* gnu/packages/golang.scm (go-torproject-org-pluggable-transports-goptlib): New variable.
 2021-07-07 09:41:19 -04:00
Raghav Gururajan
520eaa48af
gnu: Add go-github-com-sevlyar-go-daemon. 
* gnu/packages/golang.scm (go-github-com-sevlyar-go-daemon): New variable.
 2021-07-07 09:41:19 -04:00
Raghav Gururajan
24487f2ddc
gnu: Add go-github-com-keybase-go-ps. 
* gnu/packages/golang.scm (go-github-com-keybase-go-ps): New variable.
 2021-07-07 09:41:19 -04:00
Raghav Gururajan
fb138d367c
gnu: Add go-github-com-apparentlymart-go-openvpn-mgmt. 
* gnu/packages/golang.scm (go-github-com-apparentlymart-go-openvpn-mgmt): New variable.
 2021-07-07 09:41:19 -04:00
Raghav Gururajan
53e8f46a2d
gnu: Add go-github-com-emersion-go-autostart. 
* gnu/packages/golang.scm (go-github-com-emersion-go-autostart): New variable.
 2021-07-07 09:41:19 -04:00
Raghav Gururajan
8d52b4e0e1
gnu: Add go-github-com-dchest-siphash. 
* gnu/packages/golang.scm (go-github-com-dchest-siphash): New variable.

Co-authored-by: jgart <jgart@dismail.de>
 2021-07-07 09:41:19 -04:00
Raghav Gururajan
d03fa9aa92
gnu: Add go-github-com-rakyll-statik. 
* gnu/packages/golang.scm (go-github-com-rakyll-statik): New variable.

Co-authored-by: jgart <jgart@dismail.de>
 2021-07-07 09:41:18 -04:00
Efraim Flashner
a329bc7e0c
gnu: pies: Update to 1.6. 
* gnu/packages/admin.scm (pies): Update to 1.6.
 2021-07-07 15:54:49 +03:00
Tobias Geerinckx-Rice
1cc4207fa9
gnu: Add rewritefs. 
* gnu/packages/file-systems.scm (rewritefs): New public variable.
 2021-07-07 13:56:17 +02:00
Tobias Geerinckx-Rice
3fb6c96106
Revert "gnu: libvirt: Support ZFS." 
This reverts commit 61ccd756e5.
 2021-07-07 13:56:16 +02:00
Efraim Flashner
8333673c4c
gnu: julia: Adjust make-flags. 
* gnu/packages/julia.scm (julia)[arguments]: Adjust architecture
specific make-flags for some architectures.
 2021-07-07 09:10:44 +03:00
Efraim Flashner
4b4d4d7bae
gnu: openblas: Fix building on powerpc64le-linux. 
* gnu/packages/maths.scm (openblas)[arguments]: Add make-flags to enable
building for powerpc64le-linux.
 2021-07-07 09:10:44 +03:00
Efraim Flashner
67ce43c0d3
gnu: openblas: Fix building on armhf-linux. 
* gnu/packages/maths.scm (openblas)[arguments]: Add make-flag to set
target architecture.
 2021-07-07 09:10:44 +03:00
Raghav Gururajan
f480f27c9c
gnu: ytfzf: Fix loading of thumbnails. 
* gnu/packages/patches/ytfzf-programs.patch: Modify.
 2021-07-07 01:53:39 -04:00
Leo Famulari
601063c612
gnu: Mutt: Update to 2.1.0. 
* gnu/packages/mail.scm (mutt): Update to 2.1.0.
 2021-07-06 19:13:17 -04:00
Vinicius Monego
2252abce05
gnu: shotcut: Update to 21.06.29. 
* gnu/packages/video.scm (shotcut): Update to 21.06.29.
[arguments]{#:phases}: Don't return #t.
[inputs]: Use MLT 7.

Signed-off-by: Leo Famulari <leo@famulari.name>
 2021-07-06 19:13:17 -04:00
Vinicius Monego
37ce56af34
gnu: Add MLT 7. 
* gnu/packages/video.scm (mlt): New variable.
(mlt-6): Inherit from above.

Signed-off-by: Leo Famulari <leo@famulari.name>
 2021-07-06 19:13:16 -04:00
Vinicius Monego
0913843efc
gnu: mlt: Rename to mlt-6. 
* gnu/packages/video.scm (mlt): Rename to mlt-6.
[build-system]: Use cmake-build-system.
[arguments]: Remove #:make-flags. Adjust 'override-LDFLAGS phase.
{#:configure-flags}: Remove --enable-gpl3 and --enable-gpl. Set
"GTK2_GDKCONFIG_INCLUDE_DIR" and "GTK2_GLIBCONFIG_INCLUDE_DIR".
(shotcut): Use mlt-6.
* gnu/packages/animation.scm (synfig): Use mlt-6.
* gnu/packages/kde.scm (kdenlive): Use mlt-6.

This change is to add MLT 7 which will be done in the next commit.

Signed-off-by: Leo Famulari <leo@famulari.name>
 2021-07-06 19:13:16 -04:00
Vinicius Monego
177ff0775b
gnu: rtaudio: Fix include path. 
* gnu/packages/audio.scm (rtaudio)[arguments]: Add phase 'fix-inc-path to move
the header to where pkg-config expects it.
* gnu/packages/music.scm (muse-sequencer)[arguments]{#:phases}: Remove
'fix-include. Don't return #t.

Signed-off-by: Leo Famulari <leo@famulari.name>
 2021-07-06 19:13:13 -04:00
Raghav Gururajan
ffc04f5cc6
gnu: ytfzf: Use patches inside source block, instead of inputs. 
* gnu/packages/image-viewers.scm (ytfzf)[patches]: Add ytfzf-programs.patch
and ytfzf-updates.patch.
[phases](apply-patches): Remove phase.
[native-inputs]: Remove ytfzf-programs and ytfzf-updates.
 2021-07-06 09:08:29 -04:00
Raghav Gururajan
aa6e6fb2e9
gnu: Add ytfzf. 
* gnu/packages/image-viewers.scm (ytfzf): New variable.

Co-authored-by: jgart <jgart@dismail.de>
 2021-07-06 01:27:29 -04:00
Raghav Gururajan
5d10d84f5a
gnu: Add python-ueberzug. 
* gnu/packages/python-xyz.scm (python-ueberzug): New variable.

Co-authored-by: jgart <jgart@dismail.de>
 2021-07-06 01:21:45 -04:00
Julien Lepiller
4fa62cf702
gnu: ocaml-earley: Update to 3.0.0. 
* gnu/packages/ocaml.scm (ocaml-earley): Update to 3.0.0.  Use latest
ocaml version.
 2021-07-05 16:54:14 +02:00
Julien Lepiller
ef79d6c5d6
gnu: Add ocaml-sqlite3. 
* gnu/packages/ocaml.scm (ocaml-sqlite3): New variable.
(ocaml4.07-sqlite3): Inherit from ocaml-sqlite3.
* gnu/packages/bioinformatics.scm (pplacer): Also use package-with-ocaml4.07
with ocaml-sqlite3.
 2021-07-05 16:54:11 +02:00
Ricardo Wurmus
685cfdec94
gnu: conda: Update to 4.10.3. 
* gnu/packages/package-management.scm (conda): Update to 4.10.3.
[arguments]: Add phase fix-ruamel-yaml-dependency; disable three more tests;
remove sudo workaround in "init" phase.
[native-inputs]: Add python-pytest-timeout.
 2021-07-05 15:05:36 +02:00
Ricardo Wurmus
e057e93069
gnu: python-conda-package-handling: Update to 1.7.3. 
* gnu/packages/package-management.scm (python-conda-package-handling): Update
to 1.7.3.
[arguments]: Run all tests in check phase.
[native-inputs]: Add python-pytest-mock.
 2021-07-05 15:05:36 +02:00
Ricardo Wurmus
58f0913fad
gnu: python-anaconda-client: Update to 1.8.0. 
* gnu/packages/package-management.scm (python-anaconda-client): Update to
1.8.0.
[propagated-inputs]: Add python-nbformat.
[native-inputs]: Add python-freezegun.
(python2-anaconda-client): Remove variable.
 2021-07-05 15:05:36 +02:00
Nicolas Goaziou
f7692617b6
gnu: rust-predicates-2: Fix build. 
* gnu/packages/crates-io.scm (rust-predicates-2)[arguments]
<#:cargo-development-inputs>: Add missing input.
 2021-07-05 13:24:42 +02:00
Charles
ac42b51273
gnu: Add cl-hunchenissr-routes. 
* gnu/packages/lisp-xyz.scm (sbcl-hunchenissr-routes, ecl-hunchenissr-routes,
  cl-hunchenissr-routes): New variables.

Signed-off-by: Guillaume Le Vaillant <glv@posteo.net>
 2021-07-05 10:10:30 +02:00
Charles
a140ecee8d
gnu: Add cl-hunchenissr. 
* gnu/packages/lisp-xyz.scm (sbcl-hunchenissr, ecl-hunchenissr,
  cl-hunchenissr): New variables.

Signed-off-by: Guillaume Le Vaillant <glv@posteo.net>
 2021-07-05 10:10:30 +02:00
Charles
16418a974f
gnu: Add cl-portal. 
* gnu/packages/lisp-xyz.scm (sbcl-portal, ecl-portal, cl-portal): New
  variables.

Signed-off-by: Guillaume Le Vaillant <glv@posteo.net>
 2021-07-05 10:10:30 +02:00
Morgan Smith
911038e874
gnu: vim: Install manpages 
* gnu/packages/vim.scm (vim)[arguments]<#:phases>: Add fix-install.sh phase.

Signed-off-by: Efraim Flashner <efraim@flashner.co.il>
 2021-07-05 10:55:04 +03:00
Nicolas Goaziou
df97c01522
gnu: rust-quick-xml-0.22: Fix build. 
* gnu/packages/crates-io.scm (rust-quick-xml-0.22)[arguments]
<#:cargo-development-inputs>: Add missing inputs.
 2021-07-05 09:33:35 +02:00
Nicolas Goaziou
fe565ffa22
gnu: Add rust-serde-value-0.7. 
* gnu/packages/crates-io.scm (rust-serde-value-0.7): New variable.
(rust-serde-value-0.6): Inherit from above.
 2021-07-05 09:32:43 +02:00
Xinglu Chen
220c8dc25b
gnu: emacs-transient: Update to 0.3.6. 
* gnu/packages/emacs-xyz.scm (emacs-transient): Update to 0.3.6.

Signed-off-by: Nicolas Goaziou <mail@nicolasgoaziou.fr>
 2021-07-05 09:24:27 +02:00
Nicolas Goaziou
9ea656c345
gnu: monolith: Update to 2.6.1. 
* gnu/packages/web.scm (monolith): Update to 2.6.1.
 2021-07-05 09:21:30 +02:00
Nicolas Goaziou
f0fe5f69e8
gnu: rust-reqwest-0.11: Update to 0.11.4. 
* gnu/packages/crates-io.scm (rust-reqwest-0.11): Update to 0.11.4.
 2021-07-05 09:21:30 +02:00
Nicolas Goaziou
ffc389ea61
gnu: rust-assert-cmd-1: Update to 1.0.7. 
* gnu/packages/crates-io.scm (rust-assert-cmd-1): Update to 1.0.7.
 2021-07-05 09:21:30 +02:00
Nicolas Goaziou
c64fabcdef
gnu: Add rust-predicates-2. 
* gnu/packages/crates-io.scm (rust-predicates-2): New variable.
(rust-predicates-1): Inherit from above.
 2021-07-05 09:21:29 +02:00
Nicolas Goaziou
c1cf93307d
gnu: Add rust-difflib-0.4. 
* gnu/packages/crates-io.scm (rust-difflib-0.4): New variable.
 2021-07-05 09:21:01 +02:00
zimoun
656a1b6391
gnu: python2-pgpdump: Remove package. 
* gnu/packages/python-crypto.scm (python2-pgpdump): Remove variable.

Signed-off-by: Efraim Flashner <efraim@flashner.co.il>
 2021-07-05 10:14:35 +03:00
zimoun
64c181d5a9
gnu: python2-pyfakefs: Remove package. 
* gnu/packages/check.scm (python2-pyfakefs): Remove variable.

Signed-off-by: Efraim Flashner <efraim@flashner.co.il>
 2021-07-05 10:14:33 +03:00
zimoun
8b7a878de2
gnu: python2-pyzmq: Remove package. 
* gnu/packages/python-xyz.scm (python2-pyzmq): Remove variable.

Signed-off-by: Efraim Flashner <efraim@flashner.co.il>
 2021-07-05 10:14:32 +03:00
zimoun
fc288283d8
gnu: python2-testpath: Remove package. 
* gnu/packages/check.scm (python2-testpath): Remove variable.

Signed-off-by: Efraim Flashner <efraim@flashner.co.il>
 2021-07-05 10:14:30 +03:00
zimoun
46e465f2d0
gnu: python2-toolz: Remove package. 
* gnu/packages/python-xyz.scm (python2-toolz): Remove variable.

Signed-off-by: Efraim Flashner <efraim@flashner.co.il>
 2021-07-05 10:14:29 +03:00
zimoun
b4ba0ddc3d
gnu: python2-terminado: Remove package. 
* gnu/packages/python-web.scm (python2-terminado): Remove variable.

Signed-off-by: Efraim Flashner <efraim@flashner.co.il>
 2021-07-05 10:14:27 +03:00
zimoun
a92eac4107
gnu: python2-nbformat: Remove package. 
Follow the remove of 'python2-jupyter-core' by commit
a0a8fdeaf2.

* gnu/packages/python-xyz.scm (python2-nbformat): Remove variable.

Signed-off-by: Efraim Flashner <efraim@flashner.co.il>
 2021-07-05 10:14:26 +03:00
zimoun
cec2e07ec5
gnu: python2-ipython: Remove package. 
Commit a0a8fdeaf2 removed the variable
'python2-jupyer-core' which breaks the dependency 'python2-nbformat'.

* gnu/packages/python-xyz.scm (python2-ipython): Remove variable.

Signed-off-by: Efraim Flashner <efraim@flashner.co.il>
 2021-07-05 10:14:24 +03:00
zimoun
29b2e67d64
gnu: python2-jupyter-client: Remove package. 
* gnu/packages/python-xyz.scm (python2-jupyter-client): Remove variable.

Signed-off-by: Efraim Flashner <efraim@flashner.co.il>
 2021-07-05 10:14:06 +03:00
zimoun
032f4598f5
gnu: python2-nbconvert: Remove package. 
* gnu/packages/python-xyz.scm (python2-nbconvert): Remove variable.

Signed-off-by: Efraim Flashner <efraim@flashner.co.il>
 2021-07-05 10:14:02 +03:00
Matthew James Kraai
0ec7559875
gnu: mbedtls-apache: Update to 2.26.0. 
* gnu/packages/tls.scm (mbedtls-apache): Update to 2.26.0.
[source]: Add snippet.

Signed-off-by: Efraim Flashner <efraim@flashner.co.il>
 2021-07-05 10:05:07 +03:00
Nicolas Goaziou
e5a8477612
gnu: emacs-slime-volleyball: Update to 1.2.0. 
* gnu/packages/emacs-xyz.scm (emacs-slime-volleyball): Update to 1.2.0.
 2021-07-05 08:46:58 +02:00
Nicolas Goaziou
a8d1469f9a
gnu: emacs-pyim: Update to 3.8.3. 
* gnu/packages/emacs-xyz.scm (emacs-pyim): Update to 3.8.3.
 2021-07-05 08:46:51 +02:00
Nicolas Goaziou
555b908619
gnu: tectonic: Update to 0.7.1. 
* gnu/packages/rust-apps.scm (tectonic): Update to 0.7.1.
 2021-07-05 08:22:49 +02:00
Nicolas Goaziou
8684cb2f82
gnu: Add rust-quick-xml-0.22. 
* gnu/packages/crates-io.scm (rust-quick-xml-0.22): New variable.
(rust-quick-xml-0.21): Inherit from above.
 2021-07-05 08:20:50 +02:00
Raghav Gururajan
e1fb55ab67
gnu: straw-viewer: Deprecate package. 
Upstream has replaced straw-viewer with pipe-viewer.
Reference https://github.com/trizen/straw-viewer/commit/dc2dfe82

* gnu/packages/video.scm (straw-viewer): Deprecate in favour of pipe-viewer.
 2021-07-04 21:07:08 -04:00