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114476 Commits

Author SHA1 Message Date
Bruno Victal
70c27db33e
system: Modify bash skeleton to colorize 'ip' output. 
* gnu/system/shadow.scm (%default-bashrc): Add an alias for 'ip' that enables
output colorization.

Signed-off-by: Mathieu Othacehe <othacehe@gnu.org>
 2023-10-06 11:52:13 +02:00
Ricardo Wurmus
e97e708958
gnu: r-biomvrcns: Patch R constants. 
* gnu/packages/bioconductor.scm (r-biomvrcns)[arguments]: Add phase
'patch-constants.
 2023-10-06 08:55:11 +02:00
Ludovic Courtès
e863274e67
services: hurd-vm: Leave root password uninitialized when offloading. 
Starting with 953c65ffdd, offloading to
the Hurd VM would be enabled by default.  However, ‘root’ had an empty
password so any user on the host could connect to the VM over VNC, log
in as root, and potentially populate the host’s store from there.  This
change fixes that.

* gnu/services/virtualization.scm (operating-system-with-locked-root-account):
New procedure.
(hurd-vm-disk-image)[transform]: Add
‘operating-system-with-locked-root-account’ when offloading.
 2023-10-05 23:14:55 +02:00
Ludovic Courtès
917c17c052
tests: childhurd: Test SSH connection with a non-root user. 
* gnu/tests/virtualization.scm (%childhurd-os): Remove ‘services’ and
add ‘users’ to the GNU/Hurd ‘operating-system’ declaration.
(run-childhurd-test)[run-command-over-ssh]: Log in as “test” instead of
“root”.
 2023-10-05 23:14:55 +02:00
Ludovic Courtès
a0818d0236
services: mcron: Hide ‘mkdir-p’ from (shepherd support). 
This a avoids a Guile warning about the name collision with (guix build
utils).  The warning was introduced by commit
e0e85f2b23.

* gnu/services/mcron.scm (mcron-shepherd-services): Hide ‘mkdir-p’.
 2023-10-05 23:14:55 +02:00
Fabio Natali
c49cc1ac12
gnu: guile-ini: Added missing propagated input ‘guile-lib’. 
Fixes <https://issues.guix.gnu.org/66315>.

* gnu/packages/guile-xyz.scm (guile-ini)[propagated-inputs]: Add
GUILE-LIB.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
 2023-10-05 23:14:55 +02:00
André Batista
be214b56c0
gnu: prosody: Update to 0.12.4. 
* gnu/packages/messaging.scm (prosody): Update to 0.12.4.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
 2023-10-05 23:14:55 +02:00
Artyom V. Poptsov
45fbcc452f
gnu: go-ipfs: Update to 0.14.0. 
* gnu/packages/ipfs.scm (go-ipfs): Update to 0.14.0.
  [source]: Change "go-ipfs" to "kubo" in the source link.
  [arguments]: Rename "go-ipfs" to "kubo".

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
 2023-10-05 23:14:55 +02:00
Nikolaos Chatzikonstantinou
2467b7d1fb
system: bare-bones: Add comments about nss-cert and NTP service. 
TLS errors may be confusing to some users.  Two comments are added: one
comment should help clarify the extra step required for root CA certificates
to be installed, while the other will help users keep their clocks
synchronized, another source of TLS errors due to clock drift.

* gnu/system/examples/bare-bones.tmpl: Add nss-cert and NTP service comments.

Signed-off-by: Nikolaos Chatzikonstantinou <nchatz314@gmail.com>
Signed-off-by: Ludovic Courtès <ludo@gnu.org>
 2023-10-05 23:14:54 +02:00
Ludovic Courtès
97927608cb
Revert "system: accounts: Export <user-account>." 
This reverts commit 03795e2ba2.
Fixes <https://issues.guix.gnu.org/66279>.
 2023-10-05 23:14:54 +02:00
B. Wilson
87b3ac13fe
gnu: Add apple-bash. 
* gnu/packages/apple.scm: New file.
* gnu/local.mk (GNU_SYSTEM_MODELS): Add it.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
 2023-10-05 23:14:54 +02:00
Distopico
efab2a25be
gnu: rust-trybuild: Update 1.0.19 version hash. 
Fixes <https://issues.guix.gnu.org/66345>.

* gnu/packages/crates-io.scm (rust-trybuild): Update 1.0.19 hash.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
 2023-10-05 23:14:53 +02:00
Arun Isaac
0374640618
gnu: Add cgit-pink. 
* gnu/packages/version-control.scm (cgit-pink): New variable.
 2023-10-05 17:38:33 +01:00
Arun Isaac
db52c06c3d
gnu: cgit: Fix cross compilation. 
* gnu/packages/version-control.scm (cgit)[native-inputs]: Move bzip2, gzip and
xz to ...
[inputs]: ... here. Add bash-minimal.
[arguments]: Use cc-for-target.
 2023-10-05 17:38:32 +01:00
Arun Isaac
faad060771
gnu: cgit: Update package style. 
* gnu/packages/version-control.scm (cgit)[arguments]: Rewrite using
G-expressions. Do not return #t from custom phases.
 2023-10-05 17:38:28 +01:00
Mathieu Othacehe
29243a9f39
gnu: python-pynetbox: Update to 7.2.0. 
* gnu/packages/python-web.scm (python-pynetbox): Update to 7.2.0.
 2023-10-05 18:31:11 +02:00
Timotej Lazar
21f3f30141
gnu: Add python-pynetbox. 
* gnu/packages/python-web.scm (python-pynetbox): New variable.

Signed-off-by: Mathieu Othacehe <othacehe@gnu.org>
 2023-10-05 17:23:48 +02:00
Sharlatan Hellseher
9917079bd7
gnu: Add WCSTools. 
* gnu/packages/astronomy.scm (wcstools): New variable.
* gnu/packages/patches/wcstools-extend-makefiles.patch: New file.
* gnu/local.mk: Add it.

Signed-off-by: Mathieu Othacehe <othacehe@gnu.org>
 2023-10-05 17:07:16 +02:00
Ricardo Wurmus
d37e24827a
gnu: r-bayesfactor: Update to 0.9.12-4.5. 
* gnu/packages/statistics.scm (r-bayesfactor): Update to 0.9.12-4.5.
 2023-10-05 15:16:29 +02:00
Ricardo Wurmus
bba0dc6e5d
gnu: r-puniform: Update to 0.2.7. 
* gnu/packages/statistics.scm (r-puniform): Update to 0.2.7.
[propagated-inputs]: Add r-numderiv.
 2023-10-05 15:16:29 +02:00
Ricardo Wurmus
a7b9a558d5
gnu: r-lubridate: Update to 1.9.3. 
* gnu/packages/statistics.scm (r-lubridate): Update to 1.9.3.
 2023-10-05 15:16:29 +02:00
Ricardo Wurmus
6015f41454
gnu: r-vgam: Update to 1.1-9. 
* gnu/packages/statistics.scm (r-vgam): Update to 1.1-9.
 2023-10-05 15:16:29 +02:00
Ricardo Wurmus
f3a73e9ce5
gnu: r-rmarkdown: Update to 2.25. 
* gnu/packages/statistics.scm (r-rmarkdown): Update to 2.25.
 2023-10-05 15:16:29 +02:00
Ricardo Wurmus
6535a7d047
gnu: r-withr: Update to 2.5.1. 
* gnu/packages/statistics.scm (r-withr): Update to 2.5.1.
 2023-10-05 15:16:29 +02:00
Ricardo Wurmus
3b9bb9c61e
gnu: r-openssl: Update to 2.1.1. 
* gnu/packages/statistics.scm (r-openssl): Update to 2.1.1.
 2023-10-05 15:16:29 +02:00
Ricardo Wurmus
48dcf15dea
gnu: r-dbplyr: Update to 2.3.4. 
* gnu/packages/statistics.scm (r-dbplyr): Update to 2.3.4.
 2023-10-05 15:16:29 +02:00
Ricardo Wurmus
d9993b98c6
gnu: r-markdown: Update to 1.9. 
* gnu/packages/statistics.scm (r-markdown): Update to 1.9.
 2023-10-05 15:16:29 +02:00
Ricardo Wurmus
8f145cafec
gnu: r-evaluate: Update to 0.22. 
* gnu/packages/statistics.scm (r-evaluate): Update to 0.22.
 2023-10-05 15:16:29 +02:00
Ricardo Wurmus
a82e566cbc
gnu: r-plyr: Update to 1.8.9. 
* gnu/packages/statistics.scm (r-plyr): Update to 1.8.9.
 2023-10-05 15:16:29 +02:00
Ricardo Wurmus
07bf9f857f
gnu: r-matrix: Update to 1.6-1.1. 
* gnu/packages/statistics.scm (r-matrix): Update to 1.6-1.1.
 2023-10-05 15:16:29 +02:00
Ricardo Wurmus
8b56e8fd32
gnu: r-lattice: Update to 0.21-9. 
* gnu/packages/statistics.scm (r-lattice): Update to 0.21-9.
 2023-10-05 15:16:29 +02:00
Ricardo Wurmus
93f0029067
gnu: r-varhandle: Update to 2.0.6. 
* gnu/packages/cran.scm (r-varhandle): Update to 2.0.6.
 2023-10-05 15:16:29 +02:00
Ricardo Wurmus
bbf8ac3229
gnu: r-mockery: Update to 0.4.4. 
* gnu/packages/cran.scm (r-mockery): Update to 0.4.4.
 2023-10-05 15:16:29 +02:00
Ricardo Wurmus
9e2434a2ac
gnu: r-paws: Update to 0.4.0. 
* gnu/packages/cran.scm (r-paws): Update to 0.4.0.
[propagated-inputs]: Add r-paws-common.
 2023-10-05 15:16:29 +02:00
Ricardo Wurmus
dee60226bb
gnu: r-paws-common: Update to 0.6.1. 
* gnu/packages/cran.scm (r-paws-common): Update to 0.6.1.
 2023-10-05 15:16:29 +02:00
Ricardo Wurmus
5a62f0cb03
gnu: r-tensorflow: Update to 2.14.0. 
* gnu/packages/cran.scm (r-tensorflow): Update to 2.14.0.
[propagated-inputs]: Add r-lifecycle.
 2023-10-05 15:16:29 +02:00
Ricardo Wurmus
9737b40053
gnu: r-exactextractr: Update to 0.10.0. 
* gnu/packages/cran.scm (r-exactextractr): Update to 0.10.0.
 2023-10-05 15:16:29 +02:00
Ricardo Wurmus
bb034d5a57
gnu: r-protolite: Update to 2.3.0. 
* gnu/packages/cran.scm (r-protolite): Update to 2.3.0.
 2023-10-05 15:16:29 +02:00
Ricardo Wurmus
ce99c51f8f
gnu: r-vroom: Update to 1.6.4. 
* gnu/packages/cran.scm (r-vroom): Update to 1.6.4.
 2023-10-05 15:16:29 +02:00
Ricardo Wurmus
2c6fb7a21f
gnu: r-delaporte: Update to 8.3.0. 
* gnu/packages/cran.scm (r-delaporte): Update to 8.3.0.
 2023-10-05 15:16:29 +02:00
Ricardo Wurmus
12774311dd
gnu: r-pdftools: Update to 3.4.0. 
* gnu/packages/cran.scm (r-pdftools): Update to 3.4.0.
 2023-10-05 15:16:29 +02:00
Ricardo Wurmus
06fb5cf520
gnu: r-vdiffr: Update to 1.0.7. 
* gnu/packages/cran.scm (r-vdiffr): Update to 1.0.7.
 2023-10-05 15:16:29 +02:00
Ricardo Wurmus
4d0861d307
gnu: r-mlr3misc: Update to 0.13.0. 
* gnu/packages/cran.scm (r-mlr3misc): Update to 0.13.0.
 2023-10-05 15:16:29 +02:00
Ricardo Wurmus
1d7dfe2f8d
gnu: r-seurat: Update to 4.4.0. 
* gnu/packages/cran.scm (r-seurat): Update to 4.4.0.
[propagated-inputs]: Add r-purrr.
 2023-10-05 15:16:29 +02:00
Ricardo Wurmus
f7b4b14d49
gnu: r-seuratobject: Update to 4.1.4. 
* gnu/packages/cran.scm (r-seuratobject): Update to 4.1.4.
 2023-10-05 15:16:29 +02:00
Ricardo Wurmus
9703a303f6
gnu: r-metafor: Update to 4.4-0. 
* gnu/packages/cran.scm (r-metafor): Update to 4.4-0.
 2023-10-05 15:16:28 +02:00
Ricardo Wurmus
509ad5c498
gnu: r-brms: Update to 2.20.4. 
* gnu/packages/cran.scm (r-brms): Update to 2.20.4.
 2023-10-05 15:16:28 +02:00
Ricardo Wurmus
2bcbcea451
gnu: r-projpred: Update to 2.7.0. 
* gnu/packages/cran.scm (r-projpred): Update to 2.7.0.
[propagated-inputs]: Add r-gtools.
 2023-10-05 15:16:28 +02:00
Ricardo Wurmus
d1f4bc7ae1
gnu: r-rstanarm: Update to 2.26.1. 
* gnu/packages/cran.scm (r-rstanarm): Update to 2.26.1.
[propagated-inputs]: Add r-posterior.
 2023-10-05 15:16:28 +02:00
Ricardo Wurmus
ee4d8fabbb
gnu: r-rsconnect: Update to 1.1.1. 
* gnu/packages/cran.scm (r-rsconnect): Update to 1.1.1.
 2023-10-05 15:16:28 +02:00